HEADER LYASE 24-AUG-07 2V9L TITLE L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- TITLE 2 E192A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHAMNULOSE-1-PHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.19; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS ENTROPY INDEX, METAL-BINDING, OLIGOMERIZATION, ZINC, LYASE, ALDOLASE, KEYWDS 2 CLASS II, CYTOPLASM, CLEAVAGE OF L-RHAMNULOSE-1-PHOSPHATE TO KEYWDS 3 DIHYDROXYACETONEPH BACTERIAL L-RHAMNOSE METABOLISM, INTERFACE KEYWDS 4 DESIGN, SURFACE MUTATION, 2-KETOSE DEGRADATION, PROTEIN-PROTEIN KEYWDS 5 INTERFACE, RARE SUGAR, AGGREGATION, ZINC ENZYME, FIBRILLATION, KEYWDS 6 RHAMNOSE METABOLISM, PROTEIN ENGINEERING EXPDTA X-RAY DIFFRACTION AUTHOR D.GRUENINGER,G.E.SCHULZ REVDAT 6 13-DEC-23 2V9L 1 LINK REVDAT 5 24-JUL-19 2V9L 1 REMARK REVDAT 4 22-MAY-19 2V9L 1 REMARK REVDAT 3 24-FEB-09 2V9L 1 VERSN REVDAT 2 22-JAN-08 2V9L 1 JRNL REVDAT 1 15-JAN-08 2V9L 0 JRNL AUTH D.GRUENINGER,N.TREIBER,M.O.P.ZIEGLER,J.W.A.KOETTER, JRNL AUTH 2 M.-S.SCHULZE,G.E.SCHULZ JRNL TITL DESIGNED PROTEIN-PROTEIN ASSOCIATION. JRNL REF SCIENCE V. 319 206 2008 JRNL REFN ISSN 0036-8075 JRNL PMID 18187656 JRNL DOI 10.1126/SCIENCE.1150421 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KROEMER,I.MERKEL,G.E.SCHULZ REMARK 1 TITL STRUCTURE AND CATALYTIC MECHANISM OF REMARK 1 TITL 2 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE REMARK 1 REF BIOCHEMISTRY V. 42 10560 2003 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 12962479 REMARK 1 DOI 10.1021/BI0349266 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.091 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.090 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.122 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6734 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 89467 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.086 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.117 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 6206 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 82017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2121 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 564 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2712.7 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2152.5 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 39 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 26231 REMARK 3 NUMBER OF RESTRAINTS : 32549 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 ANGLE DISTANCES (A) : 0.035 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.028 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.094 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.091 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.068 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.005 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.051 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.110 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2V9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96326 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.810 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.83 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 1OJR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (V/V) 1,2-PROPANEDIOL, 0.1 M REMARK 280 ACETATE (PH4.5), PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.52950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.52950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.52950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.52950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.52950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.52950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.52950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.52950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 -53.52950 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -53.52950 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 53.52950 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 -53.52950 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -107.05900 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2016 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2037 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2059 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2117 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2260 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2417 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2472 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 6 TO TYR REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 192 TO ALA REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 254 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 3 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 PHE A 9 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 38 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 HIS A 46 CA - CB - CG ANGL. DEV. = 29.7 DEGREES REMARK 500 PHE A 49 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 PHE A 49 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 CYS A 142 CA - CB - SG ANGL. DEV. = 18.7 DEGREES REMARK 500 THR A 190 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 191 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP A 191 CB - CG - OD1 ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP A 191 CB - CG - OD2 ANGL. DEV. = -13.5 DEGREES REMARK 500 GLN A 195 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 GLN A 195 OE1 - CD - NE2 ANGL. DEV. = -14.9 DEGREES REMARK 500 GLN A 195 CG - CD - NE2 ANGL. DEV. = 17.6 DEGREES REMARK 500 TYR A 242 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 262 CG - CD - NE ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 2 -71.17 74.49 REMARK 500 ASN A 3 110.69 80.36 REMARK 500 ASP A 26 58.66 -145.21 REMARK 500 ARG A 28 -130.71 50.72 REMARK 500 ASP A 85 79.11 -157.15 REMARK 500 HIS A 143 66.17 -100.03 REMARK 500 HIS A 212 -69.95 -147.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 195 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2014 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2016 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A2025 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2028 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A2029 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2037 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A2054 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A2057 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A2059 DISTANCE = 9.76 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A2070 DISTANCE = 8.80 ANGSTROMS REMARK 525 HOH A2072 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A2083 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2118 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A2135 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2136 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A2139 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A2141 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A2145 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A2146 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH A2291 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2314 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A2316 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1275 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 141 NE2 REMARK 620 2 HIS A 143 NE2 101.4 REMARK 620 3 HIS A 212 NE2 104.3 100.8 REMARK 620 4 PO4 A1276 O1 145.7 97.6 99.9 REMARK 620 5 PO4 A1276 O4 86.6 92.7 160.4 64.1 REMARK 620 6 HOH A2535 O 76.5 173.5 85.7 81.5 81.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1285 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1286 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1287 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1288 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GT7 RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1OJR RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A) REMARK 900 RELATED ID: 2UYU RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 A88F-E192A) REMARK 900 RELATED ID: 2V2B RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E117S-E192A-K248G- R253A-E254A) REMARK 900 RELATED ID: 2UYV RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- REMARK 900 E192A) REMARK 900 RELATED ID: 2V29 RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 K15W) REMARK 900 RELATED ID: 2V2A RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A-K248G-R253A- E254A) REMARK 900 RELATED ID: 2V9E RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A-K248W-A273S) REMARK 900 RELATED ID: 2V9F RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A-K248W-A273S) REMARK 900 RELATED ID: 2V9G RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- REMARK 900 L84W-E192A) REMARK 900 RELATED ID: 2V9I RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A-K248W-L274STOP ) REMARK 900 RELATED ID: 2V9M RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 A87M-T109F-E192A) REMARK 900 RELATED ID: 2V9N RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 A88F-E192A) REMARK 900 RELATED ID: 2V9O RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 A87M-T109F-E192A) DBREF 2V9L A 1 274 UNP P32169 RHAD_ECOLI 1 274 SEQADV 2V9L TYR A 6 UNP P32169 GLN 6 ENGINEERED MUTATION SEQADV 2V9L ALA A 192 UNP P32169 GLU 192 ENGINEERED MUTATION SEQRES 1 A 274 MET GLN ASN ILE THR TYR SER TRP PHE VAL GLN GLY MET SEQRES 2 A 274 ILE LYS ALA THR THR ASP ALA TRP LEU LYS GLY TRP ASP SEQRES 3 A 274 GLU ARG ASN GLY GLY ASN LEU THR LEU ARG LEU ASP ASP SEQRES 4 A 274 ALA ASP ILE ALA PRO TYR HIS ASP ASN PHE HIS GLN GLN SEQRES 5 A 274 PRO ARG TYR ILE PRO LEU SER GLN PRO MET PRO LEU LEU SEQRES 6 A 274 ALA ASN THR PRO PHE ILE VAL THR GLY SER GLY LYS PHE SEQRES 7 A 274 PHE ARG ASN VAL GLN LEU ASP PRO ALA ALA ASN LEU GLY SEQRES 8 A 274 ILE VAL LYS VAL ASP SER ASP GLY ALA GLY TYR HIS ILE SEQRES 9 A 274 LEU TRP GLY LEU THR ASN GLU ALA VAL PRO THR SER GLU SEQRES 10 A 274 LEU PRO ALA HIS PHE LEU SER HIS CYS GLU ARG ILE LYS SEQRES 11 A 274 ALA THR ASN GLY LYS ASP ARG VAL ILE MET HIS CYS HIS SEQRES 12 A 274 ALA THR ASN LEU ILE ALA LEU THR TYR VAL LEU GLU ASN SEQRES 13 A 274 ASP THR ALA VAL PHE THR ARG GLN LEU TRP GLU GLY SER SEQRES 14 A 274 THR GLU CYS LEU VAL VAL PHE PRO ASP GLY VAL GLY ILE SEQRES 15 A 274 LEU PRO TRP MET VAL PRO GLY THR ASP ALA ILE GLY GLN SEQRES 16 A 274 ALA THR ALA GLN GLU MET GLN LYS HIS SER LEU VAL LEU SEQRES 17 A 274 TRP PRO PHE HIS GLY VAL PHE GLY SER GLY PRO THR LEU SEQRES 18 A 274 ASP GLU THR PHE GLY LEU ILE ASP THR ALA GLU LYS SER SEQRES 19 A 274 ALA GLN VAL LEU VAL LYS VAL TYR SER MET GLY GLY MET SEQRES 20 A 274 LYS GLN THR ILE SER ARG GLU GLU LEU ILE ALA LEU GLY SEQRES 21 A 274 LYS ARG PHE GLY VAL THR PRO LEU ALA SER ALA LEU ALA SEQRES 22 A 274 LEU HET ZN A1275 1 HET PO4 A1276 5 HET ACT A1277 7 HET ACT A1278 7 HET ACT A1279 7 HET ACT A1280 7 HET PGO A1281 13 HET PGO A1282 13 HET PGO A1283 13 HET PGO A1284 13 HET PGO A1285 13 HET PGO A1286 13 HET PGO A1287 13 HET PGO A1288 13 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM PGO S-1,2-PROPANEDIOL FORMUL 2 ZN ZN 2+ FORMUL 3 PO4 O4 P 3- FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 8 PGO 8(C3 H8 O2) FORMUL 16 HOH *564(H2 O) HELIX 1 1 ASN A 3 TYR A 6 5 4 HELIX 2 2 SER A 7 LYS A 23 1 17 HELIX 3 3 ASP A 38 ALA A 43 1 6 HELIX 4 4 PRO A 44 PHE A 49 5 6 HELIX 5 5 MET A 62 ALA A 66 5 5 HELIX 6 6 PHE A 78 VAL A 82 5 5 HELIX 7 7 ASP A 85 ASN A 89 1 5 HELIX 8 8 GLU A 117 THR A 132 1 16 HELIX 9 9 ALA A 144 THR A 151 1 8 HELIX 10 10 ASP A 157 GLY A 168 1 12 HELIX 11 11 GLU A 171 PHE A 176 1 6 HELIX 12 12 THR A 190 GLN A 202 1 13 HELIX 13 13 THR A 220 MET A 244 1 25 HELIX 14 14 SER A 252 GLY A 264 1 13 HELIX 15 15 LEU A 268 ALA A 273 1 6 SHEET 1 AA 9 ARG A 54 PRO A 57 0 SHEET 2 AA 9 GLY A 101 GLY A 107 -1 O TYR A 102 N ILE A 56 SHEET 3 AA 9 LEU A 90 VAL A 95 -1 O ILE A 92 N LEU A 105 SHEET 4 AA 9 PRO A 69 THR A 73 -1 O PHE A 70 N VAL A 93 SHEET 5 AA 9 GLY A 31 ARG A 36 -1 O LEU A 33 N THR A 73 SHEET 6 AA 9 VAL A 138 CYS A 142 -1 O ILE A 139 N THR A 34 SHEET 7 AA 9 GLY A 213 GLY A 218 -1 O VAL A 214 N CYS A 142 SHEET 8 AA 9 LEU A 206 TRP A 209 -1 O VAL A 207 N PHE A 215 SHEET 9 AA 9 VAL A 180 ILE A 182 1 O GLY A 181 N LEU A 208 LINK NE2 HIS A 141 ZN ZN A1275 1555 1555 2.04 LINK NE2 HIS A 143 ZN ZN A1275 1555 1555 2.05 LINK NE2 HIS A 212 ZN ZN A1275 1555 1555 1.98 LINK ZN ZN A1275 O1 PO4 A1276 1555 1555 2.06 LINK ZN ZN A1275 O4 PO4 A1276 1555 1555 2.38 LINK ZN ZN A1275 O HOH A2535 1555 1555 2.51 SITE 1 AC1 6 HIS A 141 HIS A 143 HIS A 212 PO4 A1276 SITE 2 AC1 6 PGO A1283 HOH A2535 SITE 1 AC2 12 ASN A 29 GLY A 30 GLY A 31 ASN A 32 SITE 2 AC2 12 GLU A 117 HIS A 141 HIS A 143 HIS A 212 SITE 3 AC2 12 ZN A1275 PGO A1283 HOH A2354 HOH A2535 SITE 1 AC3 9 ASN A 29 SER A 75 GLY A 76 THR A 115 SITE 2 AC3 9 SER A 116 HOH A2121 HOH A2348 HOH A2349 SITE 3 AC3 9 HOH A2536 SITE 1 AC4 5 SER A 59 GLY A 189 ASP A 191 HOH A2352 SITE 2 AC4 5 HOH A2538 SITE 1 AC5 8 TYR A 102 PRO A 114 THR A 115 SER A 116 SITE 2 AC5 8 LEU A 118 HOH A2331 HOH A2539 HOH A2540 SITE 1 AC6 11 GLY A 76 LYS A 77 PHE A 78 ASP A 222 SITE 2 AC6 11 HOH A2306 HOH A2453 HOH A2541 HOH A2542 SITE 3 AC6 11 HOH A2543 HOH A2544 HOH A2545 SITE 1 AC7 9 TRP A 25 GLU A 232 GLN A 236 HOH A2097 SITE 2 AC7 9 HOH A2101 HOH A2460 HOH A2546 HOH A2547 SITE 3 AC7 9 HOH A2548 SITE 1 AC8 5 ARG A 80 GLN A 83 HOH A2043 HOH A2088 SITE 2 AC8 5 HOH A2549 SITE 1 AC9 10 HIS A 143 GLU A 171 HIS A 212 PHE A 263 SITE 2 AC9 10 ZN A1275 PO4 A1276 HOH A2120 HOH A2395 SITE 3 AC9 10 HOH A2396 HOH A2551 SITE 1 BC1 7 LEU A 154 TYR A 242 MET A 244 LYS A 248 SITE 2 BC1 7 HOH A2552 HOH A2553 HOH A2554 SITE 1 BC2 8 PRO A 57 LEU A 58 SER A 59 GLN A 60 SITE 2 BC2 8 PRO A 61 ALA A 100 HOH A2555 HOH A2556 SITE 1 BC3 4 THR A 250 GLU A 255 HOH A2489 HOH A2558 SITE 1 BC4 9 THR A 158 GLU A 200 LYS A 203 HIS A 204 SITE 2 BC4 9 HOH A2405 HOH A2428 HOH A2559 HOH A2560 SITE 3 BC4 9 HOH A2561 SITE 1 BC5 8 ARG A 28 VAL A 175 SER A 217 GLU A 223 SITE 2 BC5 8 LEU A 227 HOH A2456 HOH A2562 HOH A2564 CRYST1 107.059 107.059 57.161 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009341 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017494 0.00000