data_2VDV # _entry.id 2VDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VDV pdb_00002vdv 10.2210/pdb2vdv/pdb PDBE EBI-34130 ? ? WWPDB D_1290034130 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-18 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VDV _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-10-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2VDU _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF TRM8, M7G METHYLATION ENZYME' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leulliot, N.' 1 'Chaillet, M.' 2 'Durand, D.' 3 'Ulryck, N.' 4 'Blondeau, K.' 5 'Van Tilbeurgh, H.' 6 # _citation.id primary _citation.title 'Structure of the Yeast tRNA M7G Methylation Complex.' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 52 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18184583 _citation.pdbx_database_id_DOI 10.1016/J.STR.2007.10.025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leulliot, N.' 1 ? primary 'Chaillet, M.' 2 ? primary 'Durand, D.' 3 ? primary 'Ulryck, N.' 4 ? primary 'Blondeau, K.' 5 ? primary 'Van Tilbeurgh, H.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE' 28897.252 2 2.1.1.33 ? 'RESIDUES 47-286' '46 N-TERMNIAL TRUNCATION' 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 2 ? ? ? ? 3 water nat water 18.015 206 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TRNA(M7G46)-METHYLTRANSFERASE, TRM8' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGME IRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYA YVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRLPTPAIL HHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGME IRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYA YVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRLPTPAIL HHHHHH ; _entity_poly.pdbx_strand_id E,F _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 PRO n 1 3 LYS n 1 4 LYS n 1 5 ARG n 1 6 TYR n 1 7 TYR n 1 8 ARG n 1 9 GLN n 1 10 ARG n 1 11 ALA n 1 12 HIS n 1 13 SER n 1 14 ASN n 1 15 PRO n 1 16 PHE n 1 17 SER n 1 18 ASP n 1 19 HIS n 1 20 GLN n 1 21 LEU n 1 22 GLU n 1 23 TYR n 1 24 PRO n 1 25 VAL n 1 26 SER n 1 27 PRO n 1 28 GLN n 1 29 ASP n 1 30 MET n 1 31 ASP n 1 32 TRP n 1 33 SER n 1 34 LYS n 1 35 LEU n 1 36 TYR n 1 37 PRO n 1 38 TYR n 1 39 TYR n 1 40 LYS n 1 41 ASN n 1 42 ALA n 1 43 GLU n 1 44 ASN n 1 45 GLY n 1 46 GLN n 1 47 MET n 1 48 THR n 1 49 LYS n 1 50 LYS n 1 51 VAL n 1 52 THR n 1 53 ILE n 1 54 ALA n 1 55 ASP n 1 56 ILE n 1 57 GLY n 1 58 CYS n 1 59 GLY n 1 60 PHE n 1 61 GLY n 1 62 GLY n 1 63 LEU n 1 64 MET n 1 65 ILE n 1 66 ASP n 1 67 LEU n 1 68 SER n 1 69 PRO n 1 70 ALA n 1 71 PHE n 1 72 PRO n 1 73 GLU n 1 74 ASP n 1 75 LEU n 1 76 ILE n 1 77 LEU n 1 78 GLY n 1 79 MET n 1 80 GLU n 1 81 ILE n 1 82 ARG n 1 83 VAL n 1 84 GLN n 1 85 VAL n 1 86 THR n 1 87 ASN n 1 88 TYR n 1 89 VAL n 1 90 GLU n 1 91 ASP n 1 92 ARG n 1 93 ILE n 1 94 ILE n 1 95 ALA n 1 96 LEU n 1 97 ARG n 1 98 ASN n 1 99 ASN n 1 100 THR n 1 101 ALA n 1 102 SER n 1 103 LYS n 1 104 HIS n 1 105 GLY n 1 106 PHE n 1 107 GLN n 1 108 ASN n 1 109 ILE n 1 110 ASN n 1 111 VAL n 1 112 LEU n 1 113 ARG n 1 114 GLY n 1 115 ASN n 1 116 ALA n 1 117 MET n 1 118 LYS n 1 119 PHE n 1 120 LEU n 1 121 PRO n 1 122 ASN n 1 123 PHE n 1 124 PHE n 1 125 GLU n 1 126 LYS n 1 127 GLY n 1 128 GLN n 1 129 LEU n 1 130 SER n 1 131 LYS n 1 132 MET n 1 133 PHE n 1 134 PHE n 1 135 CYS n 1 136 PHE n 1 137 PRO n 1 138 ASP n 1 139 PRO n 1 140 HIS n 1 141 PHE n 1 142 LYS n 1 143 GLN n 1 144 ARG n 1 145 LYS n 1 146 HIS n 1 147 LYS n 1 148 ALA n 1 149 ARG n 1 150 ILE n 1 151 ILE n 1 152 THR n 1 153 ASN n 1 154 THR n 1 155 LEU n 1 156 LEU n 1 157 SER n 1 158 GLU n 1 159 TYR n 1 160 ALA n 1 161 TYR n 1 162 VAL n 1 163 LEU n 1 164 LYS n 1 165 GLU n 1 166 GLY n 1 167 GLY n 1 168 VAL n 1 169 VAL n 1 170 TYR n 1 171 THR n 1 172 ILE n 1 173 THR n 1 174 ASP n 1 175 VAL n 1 176 LYS n 1 177 ASP n 1 178 LEU n 1 179 HIS n 1 180 GLU n 1 181 TRP n 1 182 MET n 1 183 VAL n 1 184 LYS n 1 185 HIS n 1 186 LEU n 1 187 GLU n 1 188 GLU n 1 189 HIS n 1 190 PRO n 1 191 LEU n 1 192 PHE n 1 193 GLU n 1 194 ARG n 1 195 LEU n 1 196 SER n 1 197 LYS n 1 198 GLU n 1 199 TRP n 1 200 GLU n 1 201 GLU n 1 202 ASN n 1 203 ASP n 1 204 GLU n 1 205 CYS n 1 206 VAL n 1 207 LYS n 1 208 ILE n 1 209 MET n 1 210 ARG n 1 211 ASN n 1 212 ALA n 1 213 THR n 1 214 GLU n 1 215 GLU n 1 216 GLY n 1 217 LYS n 1 218 LYS n 1 219 VAL n 1 220 GLU n 1 221 ARG n 1 222 LYS n 1 223 LYS n 1 224 GLY n 1 225 ASP n 1 226 LYS n 1 227 PHE n 1 228 VAL n 1 229 ALA n 1 230 CYS n 1 231 PHE n 1 232 THR n 1 233 ARG n 1 234 LEU n 1 235 PRO n 1 236 THR n 1 237 PRO n 1 238 ALA n 1 239 ILE n 1 240 LEU n 1 241 HIS n 1 242 HIS n 1 243 HIS n 1 244 HIS n 1 245 HIS n 1 246 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;BAKER'S YEAST ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SACCHAROMYCES CEREVISIAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'GOLD (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET9 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 47 ? ? ? E . n A 1 2 PRO 2 48 ? ? ? E . n A 1 3 LYS 3 49 ? ? ? E . n A 1 4 LYS 4 50 ? ? ? E . n A 1 5 ARG 5 51 ? ? ? E . n A 1 6 TYR 6 52 ? ? ? E . n A 1 7 TYR 7 53 ? ? ? E . n A 1 8 ARG 8 54 ? ? ? E . n A 1 9 GLN 9 55 ? ? ? E . n A 1 10 ARG 10 56 ? ? ? E . n A 1 11 ALA 11 57 ? ? ? E . n A 1 12 HIS 12 58 ? ? ? E . n A 1 13 SER 13 59 ? ? ? E . n A 1 14 ASN 14 60 60 ASN ASN E . n A 1 15 PRO 15 61 61 PRO PRO E . n A 1 16 PHE 16 62 62 PHE PHE E . n A 1 17 SER 17 63 63 SER SER E . n A 1 18 ASP 18 64 64 ASP ASP E . n A 1 19 HIS 19 65 65 HIS HIS E . n A 1 20 GLN 20 66 66 GLN GLN E . n A 1 21 LEU 21 67 67 LEU LEU E . n A 1 22 GLU 22 68 68 GLU GLU E . n A 1 23 TYR 23 69 69 TYR TYR E . n A 1 24 PRO 24 70 70 PRO PRO E . n A 1 25 VAL 25 71 71 VAL VAL E . n A 1 26 SER 26 72 72 SER SER E . n A 1 27 PRO 27 73 73 PRO PRO E . n A 1 28 GLN 28 74 74 GLN GLN E . n A 1 29 ASP 29 75 75 ASP ASP E . n A 1 30 MET 30 76 76 MET MET E . n A 1 31 ASP 31 77 77 ASP ASP E . n A 1 32 TRP 32 78 78 TRP TRP E . n A 1 33 SER 33 79 79 SER SER E . n A 1 34 LYS 34 80 80 LYS LYS E . n A 1 35 LEU 35 81 81 LEU LEU E . n A 1 36 TYR 36 82 82 TYR TYR E . n A 1 37 PRO 37 83 83 PRO PRO E . n A 1 38 TYR 38 84 84 TYR TYR E . n A 1 39 TYR 39 85 85 TYR TYR E . n A 1 40 LYS 40 86 86 LYS LYS E . n A 1 41 ASN 41 87 87 ASN ASN E . n A 1 42 ALA 42 88 ? ? ? E . n A 1 43 GLU 43 89 ? ? ? E . n A 1 44 ASN 44 90 ? ? ? E . n A 1 45 GLY 45 91 ? ? ? E . n A 1 46 GLN 46 92 92 GLN GLN E . n A 1 47 MET 47 93 93 MET MET E . n A 1 48 THR 48 94 94 THR THR E . n A 1 49 LYS 49 95 95 LYS LYS E . n A 1 50 LYS 50 96 96 LYS LYS E . n A 1 51 VAL 51 97 97 VAL VAL E . n A 1 52 THR 52 98 98 THR THR E . n A 1 53 ILE 53 99 99 ILE ILE E . n A 1 54 ALA 54 100 100 ALA ALA E . n A 1 55 ASP 55 101 101 ASP ASP E . n A 1 56 ILE 56 102 102 ILE ILE E . n A 1 57 GLY 57 103 103 GLY GLY E . n A 1 58 CYS 58 104 104 CYS CYS E . n A 1 59 GLY 59 105 105 GLY GLY E . n A 1 60 PHE 60 106 106 PHE PHE E . n A 1 61 GLY 61 107 107 GLY GLY E . n A 1 62 GLY 62 108 108 GLY GLY E . n A 1 63 LEU 63 109 109 LEU LEU E . n A 1 64 MET 64 110 110 MET MET E . n A 1 65 ILE 65 111 111 ILE ILE E . n A 1 66 ASP 66 112 112 ASP ASP E . n A 1 67 LEU 67 113 113 LEU LEU E . n A 1 68 SER 68 114 114 SER SER E . n A 1 69 PRO 69 115 115 PRO PRO E . n A 1 70 ALA 70 116 116 ALA ALA E . n A 1 71 PHE 71 117 117 PHE PHE E . n A 1 72 PRO 72 118 118 PRO PRO E . n A 1 73 GLU 73 119 119 GLU GLU E . n A 1 74 ASP 74 120 120 ASP ASP E . n A 1 75 LEU 75 121 121 LEU LEU E . n A 1 76 ILE 76 122 122 ILE ILE E . n A 1 77 LEU 77 123 123 LEU LEU E . n A 1 78 GLY 78 124 124 GLY GLY E . n A 1 79 MET 79 125 125 MET MET E . n A 1 80 GLU 80 126 126 GLU GLU E . n A 1 81 ILE 81 127 127 ILE ILE E . n A 1 82 ARG 82 128 128 ARG ARG E . n A 1 83 VAL 83 129 129 VAL VAL E . n A 1 84 GLN 84 130 130 GLN GLN E . n A 1 85 VAL 85 131 131 VAL VAL E . n A 1 86 THR 86 132 132 THR THR E . n A 1 87 ASN 87 133 133 ASN ASN E . n A 1 88 TYR 88 134 134 TYR TYR E . n A 1 89 VAL 89 135 135 VAL VAL E . n A 1 90 GLU 90 136 136 GLU GLU E . n A 1 91 ASP 91 137 137 ASP ASP E . n A 1 92 ARG 92 138 138 ARG ARG E . n A 1 93 ILE 93 139 139 ILE ILE E . n A 1 94 ILE 94 140 140 ILE ILE E . n A 1 95 ALA 95 141 141 ALA ALA E . n A 1 96 LEU 96 142 142 LEU LEU E . n A 1 97 ARG 97 143 143 ARG ARG E . n A 1 98 ASN 98 144 144 ASN ASN E . n A 1 99 ASN 99 145 145 ASN ASN E . n A 1 100 THR 100 146 146 THR THR E . n A 1 101 ALA 101 147 ? ? ? E . n A 1 102 SER 102 148 148 SER SER E . n A 1 103 LYS 103 149 149 LYS LYS E . n A 1 104 HIS 104 150 150 HIS HIS E . n A 1 105 GLY 105 151 151 GLY GLY E . n A 1 106 PHE 106 152 152 PHE PHE E . n A 1 107 GLN 107 153 153 GLN GLN E . n A 1 108 ASN 108 154 154 ASN ASN E . n A 1 109 ILE 109 155 155 ILE ILE E . n A 1 110 ASN 110 156 156 ASN ASN E . n A 1 111 VAL 111 157 157 VAL VAL E . n A 1 112 LEU 112 158 158 LEU LEU E . n A 1 113 ARG 113 159 159 ARG ARG E . n A 1 114 GLY 114 160 160 GLY GLY E . n A 1 115 ASN 115 161 161 ASN ASN E . n A 1 116 ALA 116 162 162 ALA ALA E . n A 1 117 MET 117 163 163 MET MET E . n A 1 118 LYS 118 164 164 LYS LYS E . n A 1 119 PHE 119 165 165 PHE PHE E . n A 1 120 LEU 120 166 166 LEU LEU E . n A 1 121 PRO 121 166 166 PRO PRO E B n A 1 122 ASN 122 168 168 ASN ASN E . n A 1 123 PHE 123 169 169 PHE PHE E . n A 1 124 PHE 124 170 170 PHE PHE E . n A 1 125 GLU 125 171 171 GLU GLU E . n A 1 126 LYS 126 172 172 LYS LYS E . n A 1 127 GLY 127 173 173 GLY GLY E . n A 1 128 GLN 128 174 174 GLN GLN E . n A 1 129 LEU 129 175 175 LEU LEU E . n A 1 130 SER 130 176 176 SER SER E . n A 1 131 LYS 131 177 177 LYS LYS E . n A 1 132 MET 132 178 178 MET MET E . n A 1 133 PHE 133 179 179 PHE PHE E . n A 1 134 PHE 134 180 180 PHE PHE E . n A 1 135 CYS 135 181 181 CYS CYS E . n A 1 136 PHE 136 182 182 PHE PHE E . n A 1 137 PRO 137 183 183 PRO PRO E . n A 1 138 ASP 138 184 184 ASP ASP E . n A 1 139 PRO 139 185 185 PRO PRO E . n A 1 140 HIS 140 186 ? ? ? E . n A 1 141 PHE 141 187 ? ? ? E . n A 1 142 LYS 142 188 ? ? ? E . n A 1 143 GLN 143 189 ? ? ? E . n A 1 144 ARG 144 190 ? ? ? E . n A 1 145 LYS 145 191 ? ? ? E . n A 1 146 HIS 146 192 192 HIS HIS E . n A 1 147 LYS 147 193 193 LYS LYS E . n A 1 148 ALA 148 194 194 ALA ALA E . n A 1 149 ARG 149 195 195 ARG ARG E . n A 1 150 ILE 150 196 196 ILE ILE E . n A 1 151 ILE 151 197 197 ILE ILE E . n A 1 152 THR 152 198 198 THR THR E . n A 1 153 ASN 153 199 199 ASN ASN E . n A 1 154 THR 154 200 200 THR THR E . n A 1 155 LEU 155 201 201 LEU LEU E . n A 1 156 LEU 156 202 202 LEU LEU E . n A 1 157 SER 157 203 203 SER SER E . n A 1 158 GLU 158 204 204 GLU GLU E . n A 1 159 TYR 159 205 205 TYR TYR E . n A 1 160 ALA 160 206 206 ALA ALA E . n A 1 161 TYR 161 207 207 TYR TYR E . n A 1 162 VAL 162 208 208 VAL VAL E . n A 1 163 LEU 163 209 209 LEU LEU E . n A 1 164 LYS 164 210 210 LYS LYS E . n A 1 165 GLU 165 211 211 GLU GLU E . n A 1 166 GLY 166 212 212 GLY GLY E . n A 1 167 GLY 167 213 213 GLY GLY E . n A 1 168 VAL 168 214 214 VAL VAL E . n A 1 169 VAL 169 215 215 VAL VAL E . n A 1 170 TYR 170 216 216 TYR TYR E . n A 1 171 THR 171 217 217 THR THR E . n A 1 172 ILE 172 218 218 ILE ILE E . n A 1 173 THR 173 219 219 THR THR E . n A 1 174 ASP 174 220 220 ASP ASP E . n A 1 175 VAL 175 221 221 VAL VAL E . n A 1 176 LYS 176 222 222 LYS LYS E . n A 1 177 ASP 177 223 223 ASP ASP E . n A 1 178 LEU 178 224 224 LEU LEU E . n A 1 179 HIS 179 225 225 HIS HIS E . n A 1 180 GLU 180 226 226 GLU GLU E . n A 1 181 TRP 181 227 227 TRP TRP E . n A 1 182 MET 182 228 228 MET MET E . n A 1 183 VAL 183 229 229 VAL VAL E . n A 1 184 LYS 184 230 230 LYS LYS E . n A 1 185 HIS 185 231 231 HIS HIS E . n A 1 186 LEU 186 232 232 LEU LEU E . n A 1 187 GLU 187 233 233 GLU GLU E . n A 1 188 GLU 188 234 234 GLU GLU E . n A 1 189 HIS 189 235 235 HIS HIS E . n A 1 190 PRO 190 236 236 PRO PRO E . n A 1 191 LEU 191 237 237 LEU LEU E . n A 1 192 PHE 192 238 238 PHE PHE E . n A 1 193 GLU 193 239 239 GLU GLU E . n A 1 194 ARG 194 240 240 ARG ARG E . n A 1 195 LEU 195 241 241 LEU LEU E . n A 1 196 SER 196 242 242 SER SER E . n A 1 197 LYS 197 243 243 LYS LYS E . n A 1 198 GLU 198 244 244 GLU GLU E . n A 1 199 TRP 199 245 245 TRP TRP E . n A 1 200 GLU 200 246 246 GLU GLU E . n A 1 201 GLU 201 247 247 GLU GLU E . n A 1 202 ASN 202 248 248 ASN ASN E . n A 1 203 ASP 203 249 249 ASP ASP E . n A 1 204 GLU 204 250 250 GLU GLU E . n A 1 205 CYS 205 251 251 CYS CYS E . n A 1 206 VAL 206 252 252 VAL VAL E . n A 1 207 LYS 207 253 253 LYS LYS E . n A 1 208 ILE 208 254 254 ILE ILE E . n A 1 209 MET 209 255 255 MET MET E . n A 1 210 ARG 210 256 256 ARG ARG E . n A 1 211 ASN 211 257 257 ASN ASN E . n A 1 212 ALA 212 258 258 ALA ALA E . n A 1 213 THR 213 259 259 THR THR E . n A 1 214 GLU 214 260 260 GLU GLU E . n A 1 215 GLU 215 261 261 GLU GLU E . n A 1 216 GLY 216 262 262 GLY GLY E . n A 1 217 LYS 217 263 263 LYS LYS E . n A 1 218 LYS 218 264 264 LYS LYS E . n A 1 219 VAL 219 265 265 VAL VAL E . n A 1 220 GLU 220 266 266 GLU GLU E . n A 1 221 ARG 221 267 267 ARG ARG E . n A 1 222 LYS 222 268 268 LYS LYS E . n A 1 223 LYS 223 269 269 LYS LYS E . n A 1 224 GLY 224 270 270 GLY GLY E . n A 1 225 ASP 225 271 271 ASP ASP E . n A 1 226 LYS 226 272 272 LYS LYS E . n A 1 227 PHE 227 273 273 PHE PHE E . n A 1 228 VAL 228 274 274 VAL VAL E . n A 1 229 ALA 229 275 275 ALA ALA E . n A 1 230 CYS 230 276 276 CYS CYS E . n A 1 231 PHE 231 277 277 PHE PHE E . n A 1 232 THR 232 278 278 THR THR E . n A 1 233 ARG 233 279 279 ARG ARG E . n A 1 234 LEU 234 280 280 LEU LEU E . n A 1 235 PRO 235 281 281 PRO PRO E . n A 1 236 THR 236 282 282 THR THR E . n A 1 237 PRO 237 283 283 PRO PRO E . n A 1 238 ALA 238 284 284 ALA ALA E . n A 1 239 ILE 239 285 285 ILE ILE E . n A 1 240 LEU 240 286 286 LEU LEU E . n A 1 241 HIS 241 287 ? ? ? E . n A 1 242 HIS 242 288 ? ? ? E . n A 1 243 HIS 243 289 ? ? ? E . n A 1 244 HIS 244 290 ? ? ? E . n A 1 245 HIS 245 291 ? ? ? E . n A 1 246 HIS 246 292 ? ? ? E . n B 1 1 LEU 1 47 ? ? ? F . n B 1 2 PRO 2 48 ? ? ? F . n B 1 3 LYS 3 49 ? ? ? F . n B 1 4 LYS 4 50 ? ? ? F . n B 1 5 ARG 5 51 ? ? ? F . n B 1 6 TYR 6 52 ? ? ? F . n B 1 7 TYR 7 53 ? ? ? F . n B 1 8 ARG 8 54 ? ? ? F . n B 1 9 GLN 9 55 ? ? ? F . n B 1 10 ARG 10 56 ? ? ? F . n B 1 11 ALA 11 57 ? ? ? F . n B 1 12 HIS 12 58 ? ? ? F . n B 1 13 SER 13 59 ? ? ? F . n B 1 14 ASN 14 60 60 ASN ASN F . n B 1 15 PRO 15 61 61 PRO PRO F . n B 1 16 PHE 16 62 62 PHE PHE F . n B 1 17 SER 17 63 63 SER SER F . n B 1 18 ASP 18 64 64 ASP ASP F . n B 1 19 HIS 19 65 65 HIS HIS F . n B 1 20 GLN 20 66 66 GLN GLN F . n B 1 21 LEU 21 67 67 LEU LEU F . n B 1 22 GLU 22 68 68 GLU GLU F . n B 1 23 TYR 23 69 69 TYR TYR F . n B 1 24 PRO 24 70 70 PRO PRO F . n B 1 25 VAL 25 71 71 VAL VAL F . n B 1 26 SER 26 72 72 SER SER F . n B 1 27 PRO 27 73 73 PRO PRO F . n B 1 28 GLN 28 74 74 GLN GLN F . n B 1 29 ASP 29 75 75 ASP ASP F . n B 1 30 MET 30 76 76 MET MET F . n B 1 31 ASP 31 77 77 ASP ASP F . n B 1 32 TRP 32 78 78 TRP TRP F . n B 1 33 SER 33 79 79 SER SER F . n B 1 34 LYS 34 80 80 LYS LYS F . n B 1 35 LEU 35 81 81 LEU LEU F . n B 1 36 TYR 36 82 82 TYR TYR F . n B 1 37 PRO 37 83 83 PRO PRO F . n B 1 38 TYR 38 84 84 TYR TYR F . n B 1 39 TYR 39 85 85 TYR TYR F . n B 1 40 LYS 40 86 86 LYS LYS F . n B 1 41 ASN 41 87 87 ASN ASN F . n B 1 42 ALA 42 88 ? ? ? F . n B 1 43 GLU 43 89 ? ? ? F . n B 1 44 ASN 44 90 ? ? ? F . n B 1 45 GLY 45 91 ? ? ? F . n B 1 46 GLN 46 92 92 GLN GLN F . n B 1 47 MET 47 93 93 MET MET F . n B 1 48 THR 48 94 94 THR THR F . n B 1 49 LYS 49 95 95 LYS LYS F . n B 1 50 LYS 50 96 96 LYS LYS F . n B 1 51 VAL 51 97 97 VAL VAL F . n B 1 52 THR 52 98 98 THR THR F . n B 1 53 ILE 53 99 99 ILE ILE F . n B 1 54 ALA 54 100 100 ALA ALA F . n B 1 55 ASP 55 101 101 ASP ASP F . n B 1 56 ILE 56 102 102 ILE ILE F . n B 1 57 GLY 57 103 103 GLY GLY F . n B 1 58 CYS 58 104 104 CYS CYS F . n B 1 59 GLY 59 105 105 GLY GLY F . n B 1 60 PHE 60 106 106 PHE PHE F . n B 1 61 GLY 61 107 107 GLY GLY F . n B 1 62 GLY 62 108 108 GLY GLY F . n B 1 63 LEU 63 109 109 LEU LEU F . n B 1 64 MET 64 110 110 MET MET F . n B 1 65 ILE 65 111 111 ILE ILE F . n B 1 66 ASP 66 112 112 ASP ASP F . n B 1 67 LEU 67 113 113 LEU LEU F . n B 1 68 SER 68 114 114 SER SER F . n B 1 69 PRO 69 115 115 PRO PRO F . n B 1 70 ALA 70 116 116 ALA ALA F . n B 1 71 PHE 71 117 117 PHE PHE F . n B 1 72 PRO 72 118 118 PRO PRO F . n B 1 73 GLU 73 119 119 GLU GLU F . n B 1 74 ASP 74 120 120 ASP ASP F . n B 1 75 LEU 75 121 121 LEU LEU F . n B 1 76 ILE 76 122 122 ILE ILE F . n B 1 77 LEU 77 123 123 LEU LEU F . n B 1 78 GLY 78 124 124 GLY GLY F . n B 1 79 MET 79 125 125 MET MET F . n B 1 80 GLU 80 126 126 GLU GLU F . n B 1 81 ILE 81 127 127 ILE ILE F . n B 1 82 ARG 82 128 128 ARG ARG F . n B 1 83 VAL 83 129 129 VAL VAL F . n B 1 84 GLN 84 130 130 GLN GLN F . n B 1 85 VAL 85 131 131 VAL VAL F . n B 1 86 THR 86 132 132 THR THR F . n B 1 87 ASN 87 133 133 ASN ASN F . n B 1 88 TYR 88 134 134 TYR TYR F . n B 1 89 VAL 89 135 135 VAL VAL F . n B 1 90 GLU 90 136 136 GLU GLU F . n B 1 91 ASP 91 137 137 ASP ASP F . n B 1 92 ARG 92 138 138 ARG ARG F . n B 1 93 ILE 93 139 139 ILE ILE F . n B 1 94 ILE 94 140 140 ILE ILE F . n B 1 95 ALA 95 141 141 ALA ALA F . n B 1 96 LEU 96 142 142 LEU LEU F . n B 1 97 ARG 97 143 143 ARG ARG F . n B 1 98 ASN 98 144 144 ASN ASN F . n B 1 99 ASN 99 145 145 ASN ASN F . n B 1 100 THR 100 146 146 THR THR F . n B 1 101 ALA 101 147 ? ? ? F . n B 1 102 SER 102 148 148 SER SER F . n B 1 103 LYS 103 149 149 LYS LYS F . n B 1 104 HIS 104 150 150 HIS HIS F . n B 1 105 GLY 105 151 151 GLY GLY F . n B 1 106 PHE 106 152 152 PHE PHE F . n B 1 107 GLN 107 153 153 GLN GLN F . n B 1 108 ASN 108 154 154 ASN ASN F . n B 1 109 ILE 109 155 155 ILE ILE F . n B 1 110 ASN 110 156 156 ASN ASN F . n B 1 111 VAL 111 157 157 VAL VAL F . n B 1 112 LEU 112 158 158 LEU LEU F . n B 1 113 ARG 113 159 159 ARG ARG F . n B 1 114 GLY 114 160 160 GLY GLY F . n B 1 115 ASN 115 161 161 ASN ASN F . n B 1 116 ALA 116 162 162 ALA ALA F . n B 1 117 MET 117 163 163 MET MET F . n B 1 118 LYS 118 164 164 LYS LYS F . n B 1 119 PHE 119 165 165 PHE PHE F . n B 1 120 LEU 120 166 166 LEU LEU F . n B 1 121 PRO 121 166 166 PRO PRO F B n B 1 122 ASN 122 168 168 ASN ASN F . n B 1 123 PHE 123 169 169 PHE PHE F . n B 1 124 PHE 124 170 170 PHE PHE F . n B 1 125 GLU 125 171 171 GLU GLU F . n B 1 126 LYS 126 172 172 LYS LYS F . n B 1 127 GLY 127 173 173 GLY GLY F . n B 1 128 GLN 128 174 174 GLN GLN F . n B 1 129 LEU 129 175 175 LEU LEU F . n B 1 130 SER 130 176 176 SER SER F . n B 1 131 LYS 131 177 177 LYS LYS F . n B 1 132 MET 132 178 178 MET MET F . n B 1 133 PHE 133 179 179 PHE PHE F . n B 1 134 PHE 134 180 180 PHE PHE F . n B 1 135 CYS 135 181 181 CYS CYS F . n B 1 136 PHE 136 182 182 PHE PHE F . n B 1 137 PRO 137 183 183 PRO PRO F . n B 1 138 ASP 138 184 184 ASP ASP F . n B 1 139 PRO 139 185 185 PRO PRO F . n B 1 140 HIS 140 186 ? ? ? F . n B 1 141 PHE 141 187 ? ? ? F . n B 1 142 LYS 142 188 ? ? ? F . n B 1 143 GLN 143 189 ? ? ? F . n B 1 144 ARG 144 190 ? ? ? F . n B 1 145 LYS 145 191 ? ? ? F . n B 1 146 HIS 146 192 192 HIS HIS F . n B 1 147 LYS 147 193 193 LYS LYS F . n B 1 148 ALA 148 194 194 ALA ALA F . n B 1 149 ARG 149 195 195 ARG ARG F . n B 1 150 ILE 150 196 196 ILE ILE F . n B 1 151 ILE 151 197 197 ILE ILE F . n B 1 152 THR 152 198 198 THR THR F . n B 1 153 ASN 153 199 199 ASN ASN F . n B 1 154 THR 154 200 200 THR THR F . n B 1 155 LEU 155 201 201 LEU LEU F . n B 1 156 LEU 156 202 202 LEU LEU F . n B 1 157 SER 157 203 203 SER SER F . n B 1 158 GLU 158 204 204 GLU GLU F . n B 1 159 TYR 159 205 205 TYR TYR F . n B 1 160 ALA 160 206 206 ALA ALA F . n B 1 161 TYR 161 207 207 TYR TYR F . n B 1 162 VAL 162 208 208 VAL VAL F . n B 1 163 LEU 163 209 209 LEU LEU F . n B 1 164 LYS 164 210 210 LYS LYS F . n B 1 165 GLU 165 211 211 GLU GLU F . n B 1 166 GLY 166 212 212 GLY GLY F . n B 1 167 GLY 167 213 213 GLY GLY F . n B 1 168 VAL 168 214 214 VAL VAL F . n B 1 169 VAL 169 215 215 VAL VAL F . n B 1 170 TYR 170 216 216 TYR TYR F . n B 1 171 THR 171 217 217 THR THR F . n B 1 172 ILE 172 218 218 ILE ILE F . n B 1 173 THR 173 219 219 THR THR F . n B 1 174 ASP 174 220 220 ASP ASP F . n B 1 175 VAL 175 221 221 VAL VAL F . n B 1 176 LYS 176 222 222 LYS LYS F . n B 1 177 ASP 177 223 223 ASP ASP F . n B 1 178 LEU 178 224 224 LEU LEU F . n B 1 179 HIS 179 225 225 HIS HIS F . n B 1 180 GLU 180 226 226 GLU GLU F . n B 1 181 TRP 181 227 227 TRP TRP F . n B 1 182 MET 182 228 228 MET MET F . n B 1 183 VAL 183 229 229 VAL VAL F . n B 1 184 LYS 184 230 230 LYS LYS F . n B 1 185 HIS 185 231 231 HIS HIS F . n B 1 186 LEU 186 232 232 LEU LEU F . n B 1 187 GLU 187 233 233 GLU GLU F . n B 1 188 GLU 188 234 234 GLU GLU F . n B 1 189 HIS 189 235 235 HIS HIS F . n B 1 190 PRO 190 236 236 PRO PRO F . n B 1 191 LEU 191 237 237 LEU LEU F . n B 1 192 PHE 192 238 238 PHE PHE F . n B 1 193 GLU 193 239 239 GLU GLU F . n B 1 194 ARG 194 240 240 ARG ARG F . n B 1 195 LEU 195 241 241 LEU LEU F . n B 1 196 SER 196 242 242 SER SER F . n B 1 197 LYS 197 243 243 LYS LYS F . n B 1 198 GLU 198 244 244 GLU GLU F . n B 1 199 TRP 199 245 245 TRP TRP F . n B 1 200 GLU 200 246 246 GLU GLU F . n B 1 201 GLU 201 247 247 GLU GLU F . n B 1 202 ASN 202 248 248 ASN ASN F . n B 1 203 ASP 203 249 249 ASP ASP F . n B 1 204 GLU 204 250 250 GLU GLU F . n B 1 205 CYS 205 251 251 CYS CYS F . n B 1 206 VAL 206 252 252 VAL VAL F . n B 1 207 LYS 207 253 253 LYS LYS F . n B 1 208 ILE 208 254 254 ILE ILE F . n B 1 209 MET 209 255 255 MET MET F . n B 1 210 ARG 210 256 256 ARG ARG F . n B 1 211 ASN 211 257 257 ASN ASN F . n B 1 212 ALA 212 258 258 ALA ALA F . n B 1 213 THR 213 259 259 THR THR F . n B 1 214 GLU 214 260 260 GLU GLU F . n B 1 215 GLU 215 261 261 GLU GLU F . n B 1 216 GLY 216 262 262 GLY GLY F . n B 1 217 LYS 217 263 263 LYS LYS F . n B 1 218 LYS 218 264 264 LYS LYS F . n B 1 219 VAL 219 265 265 VAL VAL F . n B 1 220 GLU 220 266 266 GLU GLU F . n B 1 221 ARG 221 267 267 ARG ARG F . n B 1 222 LYS 222 268 268 LYS LYS F . n B 1 223 LYS 223 269 269 LYS LYS F . n B 1 224 GLY 224 270 270 GLY GLY F . n B 1 225 ASP 225 271 271 ASP ASP F . n B 1 226 LYS 226 272 272 LYS LYS F . n B 1 227 PHE 227 273 273 PHE PHE F . n B 1 228 VAL 228 274 274 VAL VAL F . n B 1 229 ALA 229 275 275 ALA ALA F . n B 1 230 CYS 230 276 276 CYS CYS F . n B 1 231 PHE 231 277 277 PHE PHE F . n B 1 232 THR 232 278 278 THR THR F . n B 1 233 ARG 233 279 279 ARG ARG F . n B 1 234 LEU 234 280 280 LEU LEU F . n B 1 235 PRO 235 281 281 PRO PRO F . n B 1 236 THR 236 282 282 THR THR F . n B 1 237 PRO 237 283 283 PRO PRO F . n B 1 238 ALA 238 284 284 ALA ALA F . n B 1 239 ILE 239 285 285 ILE ILE F . n B 1 240 LEU 240 286 286 LEU LEU F . n B 1 241 HIS 241 287 ? ? ? F . n B 1 242 HIS 242 288 ? ? ? F . n B 1 243 HIS 243 289 ? ? ? F . n B 1 244 HIS 244 290 ? ? ? F . n B 1 245 HIS 245 291 ? ? ? F . n B 1 246 HIS 246 292 ? ? ? F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM 1 1287 1287 SAM SAM E . D 2 SAM 1 1287 1287 SAM SAM F . E 3 HOH 1 2001 2001 HOH HOH E . E 3 HOH 2 2002 2002 HOH HOH E . E 3 HOH 3 2003 2003 HOH HOH E . E 3 HOH 4 2004 2004 HOH HOH E . E 3 HOH 5 2005 2005 HOH HOH E . E 3 HOH 6 2006 2006 HOH HOH E . E 3 HOH 7 2007 2007 HOH HOH E . E 3 HOH 8 2008 2008 HOH HOH E . E 3 HOH 9 2009 2009 HOH HOH E . E 3 HOH 10 2010 2010 HOH HOH E . E 3 HOH 11 2011 2011 HOH HOH E . E 3 HOH 12 2012 2012 HOH HOH E . E 3 HOH 13 2013 2013 HOH HOH E . E 3 HOH 14 2014 2014 HOH HOH E . E 3 HOH 15 2015 2015 HOH HOH E . E 3 HOH 16 2016 2016 HOH HOH E . E 3 HOH 17 2017 2017 HOH HOH E . E 3 HOH 18 2018 2018 HOH HOH E . E 3 HOH 19 2019 2019 HOH HOH E . E 3 HOH 20 2020 2020 HOH HOH E . E 3 HOH 21 2021 2021 HOH HOH E . E 3 HOH 22 2022 2022 HOH HOH E . E 3 HOH 23 2023 2023 HOH HOH E . E 3 HOH 24 2024 2024 HOH HOH E . E 3 HOH 25 2025 2025 HOH HOH E . E 3 HOH 26 2026 2026 HOH HOH E . E 3 HOH 27 2027 2027 HOH HOH E . E 3 HOH 28 2028 2028 HOH HOH E . E 3 HOH 29 2029 2029 HOH HOH E . E 3 HOH 30 2030 2030 HOH HOH E . E 3 HOH 31 2031 2031 HOH HOH E . E 3 HOH 32 2032 2032 HOH HOH E . E 3 HOH 33 2033 2033 HOH HOH E . E 3 HOH 34 2034 2034 HOH HOH E . E 3 HOH 35 2035 2035 HOH HOH E . E 3 HOH 36 2036 2036 HOH HOH E . E 3 HOH 37 2037 2037 HOH HOH E . E 3 HOH 38 2038 2038 HOH HOH E . E 3 HOH 39 2039 2039 HOH HOH E . E 3 HOH 40 2040 2040 HOH HOH E . E 3 HOH 41 2041 2041 HOH HOH E . E 3 HOH 42 2042 2042 HOH HOH E . E 3 HOH 43 2043 2043 HOH HOH E . E 3 HOH 44 2044 2044 HOH HOH E . E 3 HOH 45 2045 2045 HOH HOH E . E 3 HOH 46 2046 2046 HOH HOH E . E 3 HOH 47 2047 2047 HOH HOH E . E 3 HOH 48 2048 2048 HOH HOH E . E 3 HOH 49 2049 2049 HOH HOH E . E 3 HOH 50 2050 2050 HOH HOH E . E 3 HOH 51 2051 2051 HOH HOH E . E 3 HOH 52 2052 2052 HOH HOH E . E 3 HOH 53 2053 2053 HOH HOH E . E 3 HOH 54 2054 2054 HOH HOH E . E 3 HOH 55 2055 2055 HOH HOH E . E 3 HOH 56 2056 2056 HOH HOH E . E 3 HOH 57 2057 2057 HOH HOH E . E 3 HOH 58 2058 2058 HOH HOH E . E 3 HOH 59 2059 2059 HOH HOH E . E 3 HOH 60 2060 2060 HOH HOH E . E 3 HOH 61 2061 2061 HOH HOH E . E 3 HOH 62 2062 2062 HOH HOH E . E 3 HOH 63 2063 2063 HOH HOH E . E 3 HOH 64 2064 2064 HOH HOH E . E 3 HOH 65 2065 2065 HOH HOH E . E 3 HOH 66 2066 2066 HOH HOH E . E 3 HOH 67 2067 2067 HOH HOH E . E 3 HOH 68 2068 2068 HOH HOH E . E 3 HOH 69 2069 2069 HOH HOH E . E 3 HOH 70 2070 2070 HOH HOH E . E 3 HOH 71 2071 2071 HOH HOH E . E 3 HOH 72 2072 2072 HOH HOH E . E 3 HOH 73 2073 2073 HOH HOH E . E 3 HOH 74 2074 2074 HOH HOH E . E 3 HOH 75 2075 2075 HOH HOH E . E 3 HOH 76 2076 2076 HOH HOH E . E 3 HOH 77 2077 2077 HOH HOH E . E 3 HOH 78 2078 2078 HOH HOH E . E 3 HOH 79 2079 2079 HOH HOH E . E 3 HOH 80 2080 2080 HOH HOH E . E 3 HOH 81 2081 2081 HOH HOH E . E 3 HOH 82 2082 2082 HOH HOH E . E 3 HOH 83 2083 2083 HOH HOH E . E 3 HOH 84 2084 2084 HOH HOH E . E 3 HOH 85 2085 2085 HOH HOH E . E 3 HOH 86 2086 2086 HOH HOH E . E 3 HOH 87 2087 2087 HOH HOH E . F 3 HOH 1 2001 2001 HOH HOH F . F 3 HOH 2 2002 2002 HOH HOH F . F 3 HOH 3 2003 2003 HOH HOH F . F 3 HOH 4 2004 2004 HOH HOH F . F 3 HOH 5 2005 2005 HOH HOH F . F 3 HOH 6 2006 2006 HOH HOH F . F 3 HOH 7 2007 2007 HOH HOH F . F 3 HOH 8 2008 2008 HOH HOH F . F 3 HOH 9 2009 2009 HOH HOH F . F 3 HOH 10 2010 2010 HOH HOH F . F 3 HOH 11 2011 2011 HOH HOH F . F 3 HOH 12 2012 2012 HOH HOH F . F 3 HOH 13 2013 2013 HOH HOH F . F 3 HOH 14 2014 2014 HOH HOH F . F 3 HOH 15 2015 2015 HOH HOH F . F 3 HOH 16 2016 2016 HOH HOH F . F 3 HOH 17 2017 2017 HOH HOH F . F 3 HOH 18 2018 2018 HOH HOH F . F 3 HOH 19 2019 2019 HOH HOH F . F 3 HOH 20 2020 2020 HOH HOH F . F 3 HOH 21 2021 2021 HOH HOH F . F 3 HOH 22 2022 2022 HOH HOH F . F 3 HOH 23 2023 2023 HOH HOH F . F 3 HOH 24 2024 2024 HOH HOH F . F 3 HOH 25 2025 2025 HOH HOH F . F 3 HOH 26 2026 2026 HOH HOH F . F 3 HOH 27 2027 2027 HOH HOH F . F 3 HOH 28 2028 2028 HOH HOH F . F 3 HOH 29 2029 2029 HOH HOH F . F 3 HOH 30 2030 2030 HOH HOH F . F 3 HOH 31 2031 2031 HOH HOH F . F 3 HOH 32 2032 2032 HOH HOH F . F 3 HOH 33 2033 2033 HOH HOH F . F 3 HOH 34 2034 2034 HOH HOH F . F 3 HOH 35 2035 2035 HOH HOH F . F 3 HOH 36 2036 2036 HOH HOH F . F 3 HOH 37 2037 2037 HOH HOH F . F 3 HOH 38 2038 2038 HOH HOH F . F 3 HOH 39 2039 2039 HOH HOH F . F 3 HOH 40 2040 2040 HOH HOH F . F 3 HOH 41 2041 2041 HOH HOH F . F 3 HOH 42 2042 2042 HOH HOH F . F 3 HOH 43 2043 2043 HOH HOH F . F 3 HOH 44 2044 2044 HOH HOH F . F 3 HOH 45 2045 2045 HOH HOH F . F 3 HOH 46 2046 2046 HOH HOH F . F 3 HOH 47 2047 2047 HOH HOH F . F 3 HOH 48 2048 2048 HOH HOH F . F 3 HOH 49 2049 2049 HOH HOH F . F 3 HOH 50 2050 2050 HOH HOH F . F 3 HOH 51 2051 2051 HOH HOH F . F 3 HOH 52 2052 2052 HOH HOH F . F 3 HOH 53 2053 2053 HOH HOH F . F 3 HOH 54 2054 2054 HOH HOH F . F 3 HOH 55 2055 2055 HOH HOH F . F 3 HOH 56 2056 2056 HOH HOH F . F 3 HOH 57 2057 2057 HOH HOH F . F 3 HOH 58 2058 2058 HOH HOH F . F 3 HOH 59 2059 2059 HOH HOH F . F 3 HOH 60 2060 2060 HOH HOH F . F 3 HOH 61 2061 2061 HOH HOH F . F 3 HOH 62 2062 2062 HOH HOH F . F 3 HOH 63 2063 2063 HOH HOH F . F 3 HOH 64 2064 2064 HOH HOH F . F 3 HOH 65 2065 2065 HOH HOH F . F 3 HOH 66 2066 2066 HOH HOH F . F 3 HOH 67 2067 2067 HOH HOH F . F 3 HOH 68 2068 2068 HOH HOH F . F 3 HOH 69 2069 2069 HOH HOH F . F 3 HOH 70 2070 2070 HOH HOH F . F 3 HOH 71 2071 2071 HOH HOH F . F 3 HOH 72 2072 2072 HOH HOH F . F 3 HOH 73 2073 2073 HOH HOH F . F 3 HOH 74 2074 2074 HOH HOH F . F 3 HOH 75 2075 2075 HOH HOH F . F 3 HOH 76 2076 2076 HOH HOH F . F 3 HOH 77 2077 2077 HOH HOH F . F 3 HOH 78 2078 2078 HOH HOH F . F 3 HOH 79 2079 2079 HOH HOH F . F 3 HOH 80 2080 2080 HOH HOH F . F 3 HOH 81 2081 2081 HOH HOH F . F 3 HOH 82 2082 2082 HOH HOH F . F 3 HOH 83 2083 2083 HOH HOH F . F 3 HOH 84 2084 2084 HOH HOH F . F 3 HOH 85 2085 2085 HOH HOH F . F 3 HOH 86 2086 2086 HOH HOH F . F 3 HOH 87 2087 2087 HOH HOH F . F 3 HOH 88 2088 2088 HOH HOH F . F 3 HOH 89 2089 2089 HOH HOH F . F 3 HOH 90 2090 2090 HOH HOH F . F 3 HOH 91 2091 2091 HOH HOH F . F 3 HOH 92 2092 2092 HOH HOH F . F 3 HOH 93 2093 2093 HOH HOH F . F 3 HOH 94 2094 2094 HOH HOH F . F 3 HOH 95 2095 2095 HOH HOH F . F 3 HOH 96 2096 2096 HOH HOH F . F 3 HOH 97 2097 2097 HOH HOH F . F 3 HOH 98 2098 2098 HOH HOH F . F 3 HOH 99 2099 2099 HOH HOH F . F 3 HOH 100 2100 2100 HOH HOH F . F 3 HOH 101 2101 2101 HOH HOH F . F 3 HOH 102 2102 2102 HOH HOH F . F 3 HOH 103 2103 2103 HOH HOH F . F 3 HOH 104 2104 2104 HOH HOH F . F 3 HOH 105 2105 2105 HOH HOH F . F 3 HOH 106 2106 2106 HOH HOH F . F 3 HOH 107 2107 2107 HOH HOH F . F 3 HOH 108 2108 2108 HOH HOH F . F 3 HOH 109 2109 2109 HOH HOH F . F 3 HOH 110 2110 2110 HOH HOH F . F 3 HOH 111 2111 2111 HOH HOH F . F 3 HOH 112 2112 2112 HOH HOH F . F 3 HOH 113 2113 2113 HOH HOH F . F 3 HOH 114 2114 2114 HOH HOH F . F 3 HOH 115 2115 2115 HOH HOH F . F 3 HOH 116 2116 2116 HOH HOH F . F 3 HOH 117 2117 2117 HOH HOH F . F 3 HOH 118 2118 2118 HOH HOH F . F 3 HOH 119 2119 2119 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 MOLREP phasing . ? 2 # _cell.entry_id 2VDV _cell.length_a 128.318 _cell.length_b 58.686 _cell.length_c 94.760 _cell.angle_alpha 90.00 _cell.angle_beta 130.13 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VDV _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 2VDV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 51.83 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93300 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.93300 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VDV _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.30 _reflns.number_obs 22957 _reflns.number_all ? _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.40 _reflns_shell.percent_possible_all 75.8 _reflns_shell.Rmerge_I_obs 0.25 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.10 _reflns_shell.pdbx_redundancy 4.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VDV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22957 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 95.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2326 _refine.ls_R_factor_R_free 0.2654 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'TRM8 FROM TRM8-TRM82 COMPLEX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3526 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 206 _refine_hist.number_atoms_total 3786 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 20 # _database_PDB_matrix.entry_id 2VDV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2VDV _struct.title 'Structure of trm8, m7G methylation enzyme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VDV _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'S-ADENOSYL-L-METHIONINE, PHOSPHORYLATION, METHYLTRANSFERASE, M7G, TRNA, SPOUT MT, TRANSFERASE, TRNA PROCESSING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP TRM8_YEAST 1 ? ? Q12009 ? 2 PDB 2VDV 1 ? ? 2VDV ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VDV E 1 ? 240 ? Q12009 47 ? 286 ? 47 286 2 2 2VDV E 241 ? 246 ? 2VDV 287 ? 292 ? 287 292 3 1 2VDV F 1 ? 240 ? Q12009 47 ? 286 ? 47 286 4 2 2VDV F 241 ? 246 ? 2VDV 287 ? 292 ? 287 292 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PQS dimeric 2 # _pdbx_struct_assembly_prop.biol_id 3 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 1200 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F 3 1 A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 16 ? GLN A 20 ? PHE E 62 GLN E 66 5 ? 5 HELX_P HELX_P2 2 ASP A 31 ? LEU A 35 ? ASP E 77 LEU E 81 5 ? 5 HELX_P HELX_P3 3 TYR A 36 ? TYR A 39 ? TYR E 82 TYR E 85 5 ? 4 HELX_P HELX_P4 4 GLY A 61 ? PHE A 71 ? GLY E 107 PHE E 117 1 ? 11 HELX_P HELX_P5 5 ARG A 82 ? ASN A 99 ? ARG E 128 ASN E 145 1 ? 18 HELX_P HELX_P6 6 PHE A 119 ? PHE A 123 ? PHE E 165 PHE E 169 5 ? 5 HELX_P HELX_P7 7 THR A 152 ? VAL A 162 ? THR E 198 VAL E 208 1 ? 11 HELX_P HELX_P8 8 VAL A 175 ? HIS A 189 ? VAL E 221 HIS E 235 1 ? 15 HELX_P HELX_P9 9 SER A 196 ? ASN A 202 ? SER E 242 ASN E 248 1 ? 7 HELX_P HELX_P10 10 ASP A 203 ? ALA A 212 ? ASP E 249 ALA E 258 1 ? 10 HELX_P HELX_P11 11 THR A 213 ? LYS A 222 ? THR E 259 LYS E 268 1 ? 10 HELX_P HELX_P12 12 PHE B 16 ? GLN B 20 ? PHE F 62 GLN F 66 5 ? 5 HELX_P HELX_P13 13 ASP B 31 ? LEU B 35 ? ASP F 77 LEU F 81 5 ? 5 HELX_P HELX_P14 14 TYR B 36 ? TYR B 39 ? TYR F 82 TYR F 85 5 ? 4 HELX_P HELX_P15 15 GLY B 61 ? PHE B 71 ? GLY F 107 PHE F 117 1 ? 11 HELX_P HELX_P16 16 ARG B 82 ? ASN B 99 ? ARG F 128 ASN F 145 1 ? 18 HELX_P HELX_P17 17 PHE B 119 ? PHE B 123 ? PHE F 165 PHE F 169 5 ? 5 HELX_P HELX_P18 18 THR B 152 ? VAL B 162 ? THR F 198 VAL F 208 1 ? 11 HELX_P HELX_P19 19 VAL B 175 ? HIS B 189 ? VAL F 221 HIS F 235 1 ? 15 HELX_P HELX_P20 20 SER B 196 ? ASN B 202 ? SER F 242 ASN F 248 1 ? 7 HELX_P HELX_P21 21 ASP B 203 ? ALA B 212 ? ASP F 249 ALA F 258 1 ? 10 HELX_P HELX_P22 22 THR B 213 ? LYS B 222 ? THR F 259 LYS F 268 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details EA ? 7 ? FA ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense EA 1 2 ? parallel EA 2 3 ? parallel EA 3 4 ? parallel EA 4 5 ? parallel EA 5 6 ? anti-parallel EA 6 7 ? anti-parallel FA 1 2 ? parallel FA 2 3 ? parallel FA 3 4 ? parallel FA 4 5 ? parallel FA 5 6 ? anti-parallel FA 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id EA 1 ILE A 109 ? ARG A 113 ? ILE E 155 ARG E 159 EA 2 LEU A 75 ? GLU A 80 ? LEU E 121 GLU E 126 EA 3 VAL A 51 ? ILE A 56 ? VAL E 97 ILE E 102 EA 4 LEU A 129 ? CYS A 135 ? LEU E 175 CYS E 181 EA 5 LEU A 163 ? THR A 173 ? LEU E 209 THR E 219 EA 6 PHE A 227 ? ARG A 233 ? PHE E 273 ARG E 279 EA 7 PHE A 192 ? ARG A 194 ? PHE E 238 ARG E 240 FA 1 ILE B 109 ? ARG B 113 ? ILE F 155 ARG F 159 FA 2 LEU B 75 ? GLU B 80 ? LEU F 121 GLU F 126 FA 3 VAL B 51 ? ILE B 56 ? VAL F 97 ILE F 102 FA 4 LEU B 129 ? CYS B 135 ? LEU F 175 CYS F 181 FA 5 LEU B 163 ? THR B 173 ? LEU F 209 THR F 219 FA 6 PHE B 227 ? ARG B 233 ? PHE F 273 ARG F 279 FA 7 PHE B 192 ? ARG B 194 ? PHE F 238 ARG F 240 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id EA 1 2 N ASN A 110 ? N ASN E 156 O ILE A 76 ? O ILE E 122 EA 2 3 O LEU A 75 ? O LEU E 121 N THR A 52 ? N THR E 98 EA 3 4 O THR A 52 ? O THR E 98 N SER A 130 ? N SER E 176 EA 4 5 O LEU A 129 ? O LEU E 175 N LYS A 164 ? N LYS E 210 EA 5 6 N THR A 173 ? N THR E 219 O PHE A 227 ? O PHE E 273 EA 6 7 N THR A 232 ? N THR E 278 O GLU A 193 ? O GLU E 239 FA 1 2 N ASN B 110 ? N ASN F 156 O ILE B 76 ? O ILE F 122 FA 2 3 O LEU B 75 ? O LEU F 121 N THR B 52 ? N THR F 98 FA 3 4 O THR B 52 ? O THR F 98 N SER B 130 ? N SER F 176 FA 4 5 O LEU B 129 ? O LEU F 175 N LYS B 164 ? N LYS F 210 FA 5 6 N THR B 173 ? N THR F 219 O PHE B 227 ? O PHE F 273 FA 6 7 N THR B 232 ? N THR F 278 O GLU B 193 ? O GLU F 239 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE SAM E1287' AC2 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE SAM F1287' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 GLY A 57 ? GLY E 103 . ? 1_555 ? 2 AC1 16 CYS A 58 ? CYS E 104 . ? 1_555 ? 3 AC1 16 GLY A 59 ? GLY E 105 . ? 1_555 ? 4 AC1 16 GLU A 80 ? GLU E 126 . ? 1_555 ? 5 AC1 16 ILE A 81 ? ILE E 127 . ? 1_555 ? 6 AC1 16 ARG A 82 ? ARG E 128 . ? 1_555 ? 7 AC1 16 GLY A 114 ? GLY E 160 . ? 1_555 ? 8 AC1 16 ASN A 115 ? ASN E 161 . ? 1_555 ? 9 AC1 16 ALA A 116 ? ALA E 162 . ? 1_555 ? 10 AC1 16 CYS A 135 ? CYS E 181 . ? 1_555 ? 11 AC1 16 PHE A 136 ? PHE E 182 . ? 1_555 ? 12 AC1 16 ASP A 138 ? ASP E 184 . ? 1_555 ? 13 AC1 16 THR A 213 ? THR E 259 . ? 1_555 ? 14 AC1 16 GLU A 215 ? GLU E 261 . ? 1_555 ? 15 AC1 16 HOH E . ? HOH E 2086 . ? 1_555 ? 16 AC1 16 HOH E . ? HOH E 2087 . ? 1_555 ? 17 AC2 16 GLY B 57 ? GLY F 103 . ? 1_555 ? 18 AC2 16 CYS B 58 ? CYS F 104 . ? 1_555 ? 19 AC2 16 GLU B 80 ? GLU F 126 . ? 1_555 ? 20 AC2 16 ILE B 81 ? ILE F 127 . ? 1_555 ? 21 AC2 16 ARG B 82 ? ARG F 128 . ? 1_555 ? 22 AC2 16 GLY B 114 ? GLY F 160 . ? 1_555 ? 23 AC2 16 ASN B 115 ? ASN F 161 . ? 1_555 ? 24 AC2 16 ALA B 116 ? ALA F 162 . ? 1_555 ? 25 AC2 16 CYS B 135 ? CYS F 181 . ? 1_555 ? 26 AC2 16 PHE B 136 ? PHE F 182 . ? 1_555 ? 27 AC2 16 ASP B 138 ? ASP F 184 . ? 1_555 ? 28 AC2 16 THR B 213 ? THR F 259 . ? 1_555 ? 29 AC2 16 GLU B 215 ? GLU F 261 . ? 1_555 ? 30 AC2 16 HOH F . ? HOH F 2116 . ? 1_555 ? 31 AC2 16 HOH F . ? HOH F 2117 . ? 1_555 ? 32 AC2 16 HOH F . ? HOH F 2119 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE E 152 ? ? 49.56 25.49 2 1 LYS E 164 ? ? -94.09 59.80 3 1 PHE E 165 ? ? 64.98 78.49 4 1 ASN E 257 ? ? -147.87 20.55 5 1 PHE F 152 ? ? 49.17 26.84 6 1 LYS F 164 ? ? -94.83 58.56 7 1 PHE F 165 ? ? 66.16 78.36 8 1 ASN F 257 ? ? -148.03 19.95 # _pdbx_entry_details.entry_id 2VDV _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details '46 N TERM TRUNCATION 6 HIS TAG C-TERM' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 E LEU 47 ? A LEU 1 2 1 Y 1 E PRO 48 ? A PRO 2 3 1 Y 1 E LYS 49 ? A LYS 3 4 1 Y 1 E LYS 50 ? A LYS 4 5 1 Y 1 E ARG 51 ? A ARG 5 6 1 Y 1 E TYR 52 ? A TYR 6 7 1 Y 1 E TYR 53 ? A TYR 7 8 1 Y 1 E ARG 54 ? A ARG 8 9 1 Y 1 E GLN 55 ? A GLN 9 10 1 Y 1 E ARG 56 ? A ARG 10 11 1 Y 1 E ALA 57 ? A ALA 11 12 1 Y 1 E HIS 58 ? A HIS 12 13 1 Y 1 E SER 59 ? A SER 13 14 1 Y 1 E ALA 88 ? A ALA 42 15 1 Y 1 E GLU 89 ? A GLU 43 16 1 Y 1 E ASN 90 ? A ASN 44 17 1 Y 1 E GLY 91 ? A GLY 45 18 1 Y 1 E ALA 147 ? A ALA 101 19 1 Y 1 E HIS 186 ? A HIS 140 20 1 Y 1 E PHE 187 ? A PHE 141 21 1 Y 1 E LYS 188 ? A LYS 142 22 1 Y 1 E GLN 189 ? A GLN 143 23 1 Y 1 E ARG 190 ? A ARG 144 24 1 Y 1 E LYS 191 ? A LYS 145 25 1 Y 1 E HIS 287 ? A HIS 241 26 1 Y 1 E HIS 288 ? A HIS 242 27 1 Y 1 E HIS 289 ? A HIS 243 28 1 Y 1 E HIS 290 ? A HIS 244 29 1 Y 1 E HIS 291 ? A HIS 245 30 1 Y 1 E HIS 292 ? A HIS 246 31 1 Y 1 F LEU 47 ? B LEU 1 32 1 Y 1 F PRO 48 ? B PRO 2 33 1 Y 1 F LYS 49 ? B LYS 3 34 1 Y 1 F LYS 50 ? B LYS 4 35 1 Y 1 F ARG 51 ? B ARG 5 36 1 Y 1 F TYR 52 ? B TYR 6 37 1 Y 1 F TYR 53 ? B TYR 7 38 1 Y 1 F ARG 54 ? B ARG 8 39 1 Y 1 F GLN 55 ? B GLN 9 40 1 Y 1 F ARG 56 ? B ARG 10 41 1 Y 1 F ALA 57 ? B ALA 11 42 1 Y 1 F HIS 58 ? B HIS 12 43 1 Y 1 F SER 59 ? B SER 13 44 1 Y 1 F ALA 88 ? B ALA 42 45 1 Y 1 F GLU 89 ? B GLU 43 46 1 Y 1 F ASN 90 ? B ASN 44 47 1 Y 1 F GLY 91 ? B GLY 45 48 1 Y 1 F ALA 147 ? B ALA 101 49 1 Y 1 F HIS 186 ? B HIS 140 50 1 Y 1 F PHE 187 ? B PHE 141 51 1 Y 1 F LYS 188 ? B LYS 142 52 1 Y 1 F GLN 189 ? B GLN 143 53 1 Y 1 F ARG 190 ? B ARG 144 54 1 Y 1 F LYS 191 ? B LYS 145 55 1 Y 1 F HIS 287 ? B HIS 241 56 1 Y 1 F HIS 288 ? B HIS 242 57 1 Y 1 F HIS 289 ? B HIS 243 58 1 Y 1 F HIS 290 ? B HIS 244 59 1 Y 1 F HIS 291 ? B HIS 245 60 1 Y 1 F HIS 292 ? B HIS 246 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SAM N N N N 290 SAM CA C N S 291 SAM C C N N 292 SAM O O N N 293 SAM OXT O N N 294 SAM CB C N N 295 SAM CG C N N 296 SAM SD S N S 297 SAM CE C N N 298 SAM "C5'" C N N 299 SAM "C4'" C N S 300 SAM "O4'" O N N 301 SAM "C3'" C N S 302 SAM "O3'" O N N 303 SAM "C2'" C N R 304 SAM "O2'" O N N 305 SAM "C1'" C N R 306 SAM N9 N Y N 307 SAM C8 C Y N 308 SAM N7 N Y N 309 SAM C5 C Y N 310 SAM C6 C Y N 311 SAM N6 N N N 312 SAM N1 N Y N 313 SAM C2 C Y N 314 SAM N3 N Y N 315 SAM C4 C Y N 316 SAM HN1 H N N 317 SAM HN2 H N N 318 SAM HA H N N 319 SAM HB1 H N N 320 SAM HB2 H N N 321 SAM HG1 H N N 322 SAM HG2 H N N 323 SAM HE1 H N N 324 SAM HE2 H N N 325 SAM HE3 H N N 326 SAM "H5'1" H N N 327 SAM "H5'2" H N N 328 SAM "H4'" H N N 329 SAM "H3'" H N N 330 SAM "HO3'" H N N 331 SAM "H2'" H N N 332 SAM "HO2'" H N N 333 SAM "H1'" H N N 334 SAM H8 H N N 335 SAM HN61 H N N 336 SAM HN62 H N N 337 SAM H2 H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TRP N N N N 370 TRP CA C N S 371 TRP C C N N 372 TRP O O N N 373 TRP CB C N N 374 TRP CG C Y N 375 TRP CD1 C Y N 376 TRP CD2 C Y N 377 TRP NE1 N Y N 378 TRP CE2 C Y N 379 TRP CE3 C Y N 380 TRP CZ2 C Y N 381 TRP CZ3 C Y N 382 TRP CH2 C Y N 383 TRP OXT O N N 384 TRP H H N N 385 TRP H2 H N N 386 TRP HA H N N 387 TRP HB2 H N N 388 TRP HB3 H N N 389 TRP HD1 H N N 390 TRP HE1 H N N 391 TRP HE3 H N N 392 TRP HZ2 H N N 393 TRP HZ3 H N N 394 TRP HH2 H N N 395 TRP HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 VAL N N N N 421 VAL CA C N S 422 VAL C C N N 423 VAL O O N N 424 VAL CB C N N 425 VAL CG1 C N N 426 VAL CG2 C N N 427 VAL OXT O N N 428 VAL H H N N 429 VAL H2 H N N 430 VAL HA H N N 431 VAL HB H N N 432 VAL HG11 H N N 433 VAL HG12 H N N 434 VAL HG13 H N N 435 VAL HG21 H N N 436 VAL HG22 H N N 437 VAL HG23 H N N 438 VAL HXT H N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SAM N CA sing N N 277 SAM N HN1 sing N N 278 SAM N HN2 sing N N 279 SAM CA C sing N N 280 SAM CA CB sing N N 281 SAM CA HA sing N N 282 SAM C O doub N N 283 SAM C OXT sing N N 284 SAM CB CG sing N N 285 SAM CB HB1 sing N N 286 SAM CB HB2 sing N N 287 SAM CG SD sing N N 288 SAM CG HG1 sing N N 289 SAM CG HG2 sing N N 290 SAM SD CE sing N N 291 SAM SD "C5'" sing N N 292 SAM CE HE1 sing N N 293 SAM CE HE2 sing N N 294 SAM CE HE3 sing N N 295 SAM "C5'" "C4'" sing N N 296 SAM "C5'" "H5'1" sing N N 297 SAM "C5'" "H5'2" sing N N 298 SAM "C4'" "O4'" sing N N 299 SAM "C4'" "C3'" sing N N 300 SAM "C4'" "H4'" sing N N 301 SAM "O4'" "C1'" sing N N 302 SAM "C3'" "O3'" sing N N 303 SAM "C3'" "C2'" sing N N 304 SAM "C3'" "H3'" sing N N 305 SAM "O3'" "HO3'" sing N N 306 SAM "C2'" "O2'" sing N N 307 SAM "C2'" "C1'" sing N N 308 SAM "C2'" "H2'" sing N N 309 SAM "O2'" "HO2'" sing N N 310 SAM "C1'" N9 sing N N 311 SAM "C1'" "H1'" sing N N 312 SAM N9 C8 sing Y N 313 SAM N9 C4 sing Y N 314 SAM C8 N7 doub Y N 315 SAM C8 H8 sing N N 316 SAM N7 C5 sing Y N 317 SAM C5 C6 sing Y N 318 SAM C5 C4 doub Y N 319 SAM C6 N6 sing N N 320 SAM C6 N1 doub Y N 321 SAM N6 HN61 sing N N 322 SAM N6 HN62 sing N N 323 SAM N1 C2 sing Y N 324 SAM C2 N3 doub Y N 325 SAM C2 H2 sing N N 326 SAM N3 C4 sing Y N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TRP N CA sing N N 357 TRP N H sing N N 358 TRP N H2 sing N N 359 TRP CA C sing N N 360 TRP CA CB sing N N 361 TRP CA HA sing N N 362 TRP C O doub N N 363 TRP C OXT sing N N 364 TRP CB CG sing N N 365 TRP CB HB2 sing N N 366 TRP CB HB3 sing N N 367 TRP CG CD1 doub Y N 368 TRP CG CD2 sing Y N 369 TRP CD1 NE1 sing Y N 370 TRP CD1 HD1 sing N N 371 TRP CD2 CE2 doub Y N 372 TRP CD2 CE3 sing Y N 373 TRP NE1 CE2 sing Y N 374 TRP NE1 HE1 sing N N 375 TRP CE2 CZ2 sing Y N 376 TRP CE3 CZ3 doub Y N 377 TRP CE3 HE3 sing N N 378 TRP CZ2 CH2 doub Y N 379 TRP CZ2 HZ2 sing N N 380 TRP CZ3 CH2 sing Y N 381 TRP CZ3 HZ3 sing N N 382 TRP CH2 HH2 sing N N 383 TRP OXT HXT sing N N 384 TYR N CA sing N N 385 TYR N H sing N N 386 TYR N H2 sing N N 387 TYR CA C sing N N 388 TYR CA CB sing N N 389 TYR CA HA sing N N 390 TYR C O doub N N 391 TYR C OXT sing N N 392 TYR CB CG sing N N 393 TYR CB HB2 sing N N 394 TYR CB HB3 sing N N 395 TYR CG CD1 doub Y N 396 TYR CG CD2 sing Y N 397 TYR CD1 CE1 sing Y N 398 TYR CD1 HD1 sing N N 399 TYR CD2 CE2 doub Y N 400 TYR CD2 HD2 sing N N 401 TYR CE1 CZ doub Y N 402 TYR CE1 HE1 sing N N 403 TYR CE2 CZ sing Y N 404 TYR CE2 HE2 sing N N 405 TYR CZ OH sing N N 406 TYR OH HH sing N N 407 TYR OXT HXT sing N N 408 VAL N CA sing N N 409 VAL N H sing N N 410 VAL N H2 sing N N 411 VAL CA C sing N N 412 VAL CA CB sing N N 413 VAL CA HA sing N N 414 VAL C O doub N N 415 VAL C OXT sing N N 416 VAL CB CG1 sing N N 417 VAL CB CG2 sing N N 418 VAL CB HB sing N N 419 VAL CG1 HG11 sing N N 420 VAL CG1 HG12 sing N N 421 VAL CG1 HG13 sing N N 422 VAL CG2 HG21 sing N N 423 VAL CG2 HG22 sing N N 424 VAL CG2 HG23 sing N N 425 VAL OXT HXT sing N N 426 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'TRM8 FROM TRM8-TRM82 COMPLEX' # _atom_sites.entry_id 2VDV _atom_sites.fract_transf_matrix[1][1] 0.007793 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006569 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017040 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013802 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_