HEADER PROTEIN BINDING 21-DEC-07 2VKP TITLE CRYSTAL STRUCTURE OF BTB DOMAIN FROM BTBD6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BTB/POZ DOMAIN-CONTAINING PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BTB DOMAIN, RESIDUES 2-108; COMPND 5 SYNONYM: LENS BTB DOMAIN PROTEIN, BTB DOMAIN PROTEIN BTBD6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PROTEIN-BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.D.O.COOPER,A.C.W.PIKE,E.SALAH,P.FILIPPAKOPOULOS,G.BUNKOCZI, AUTHOR 2 J.M.ELKINS,F.VON DELFT,O.GILEADI,A.EDWARDS,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 3 S.KNAPP REVDAT 5 13-DEC-17 2VKP 1 SOURCE JRNL REVDAT 4 06-MAR-13 2VKP 1 REMARK DBREF SEQADV MASTER REVDAT 3 13-JUL-11 2VKP 1 VERSN REVDAT 2 24-FEB-09 2VKP 1 VERSN REVDAT 1 12-FEB-08 2VKP 0 JRNL AUTH C.D.O.COOPER,A.C.W.PIKE,E.SALAH,P.FILIPPAKOPOULOS, JRNL AUTH 2 G.BUNKOCZI,J.M.ELKINS,F.VON DELFT,O.GILEADI,A.EDWARDS, JRNL AUTH 3 J.WEIGELT,C.H.ARROWSMITH,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF BTB DOMAIN FROM BTBD6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1907 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1625 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.60000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : -2.39000 REMARK 3 B12 (A**2) : 0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1673 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1060 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2284 ; 1.361 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2610 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 5.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;28.405 ;24.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 254 ;11.727 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;20.891 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1833 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 333 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 354 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 923 ; 0.237 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 869 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 718 ; 0.116 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1066 ; 3.662 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1725 ; 4.796 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 607 ; 6.877 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 559 ; 8.732 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 41.2846 27.3009 0.6468 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.0307 REMARK 3 T33: 0.0511 T12: -0.0441 REMARK 3 T13: 0.0678 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.4882 L22: 1.5728 REMARK 3 L33: 2.5896 L12: 0.1963 REMARK 3 L13: -0.7416 L23: 0.1676 REMARK 3 S TENSOR REMARK 3 S11: -0.1469 S12: 0.1373 S13: -0.2094 REMARK 3 S21: -0.1850 S22: 0.0727 S23: -0.0658 REMARK 3 S31: 0.2356 S32: -0.0339 S33: 0.0742 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0470 25.6666 7.3345 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.0180 REMARK 3 T33: 0.1007 T12: -0.0504 REMARK 3 T13: 0.0627 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 3.7510 L22: 4.0483 REMARK 3 L33: 4.2659 L12: -1.5218 REMARK 3 L13: 0.7173 L23: 0.2738 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: 0.1362 S13: -0.3559 REMARK 3 S21: -0.0115 S22: -0.0890 S23: -0.0903 REMARK 3 S31: 0.4830 S32: 0.2038 S33: 0.1769 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0348 37.5386 -0.1561 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.1438 REMARK 3 T33: 0.0975 T12: -0.0319 REMARK 3 T13: -0.0028 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 12.1811 L22: 15.7433 REMARK 3 L33: 16.3144 L12: -8.3971 REMARK 3 L13: -8.2479 L23: 8.0567 REMARK 3 S TENSOR REMARK 3 S11: 0.1114 S12: 0.2964 S13: 0.4379 REMARK 3 S21: -0.5013 S22: -0.0619 S23: 0.3238 REMARK 3 S31: -0.9255 S32: -0.5533 S33: -0.0495 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 33.4625 35.9551 12.0509 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.0373 REMARK 3 T33: 0.0865 T12: -0.0393 REMARK 3 T13: 0.0099 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 4.1874 L22: 2.7477 REMARK 3 L33: 4.9692 L12: -0.2381 REMARK 3 L13: -1.8813 L23: 1.4294 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: 0.0723 S13: 0.0682 REMARK 3 S21: -0.1700 S22: 0.0094 S23: 0.0952 REMARK 3 S31: 0.0042 S32: -0.1848 S33: 0.0378 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1480 42.3726 17.7359 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.0952 REMARK 3 T33: 0.1366 T12: 0.0100 REMARK 3 T13: -0.0066 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 14.1767 L22: 6.7871 REMARK 3 L33: 11.7528 L12: -3.0468 REMARK 3 L13: 0.8567 L23: 2.1061 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: -0.1584 S13: 0.3835 REMARK 3 S21: 0.1745 S22: 0.0215 S23: 0.6156 REMARK 3 S31: -0.4019 S32: -0.6739 S33: -0.0470 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2274 24.4153 40.7777 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1048 REMARK 3 T33: 0.0471 T12: -0.1445 REMARK 3 T13: 0.0547 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.0774 L22: 1.7635 REMARK 3 L33: 4.4062 L12: 0.3849 REMARK 3 L13: 0.5329 L23: -0.3525 REMARK 3 S TENSOR REMARK 3 S11: -0.1454 S12: -0.1632 S13: -0.0365 REMARK 3 S21: -0.2894 S22: 0.1158 S23: -0.2694 REMARK 3 S31: 0.4730 S32: -0.1209 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1447 21.9852 36.9810 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.1910 REMARK 3 T33: 0.0119 T12: -0.2201 REMARK 3 T13: -0.0164 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 5.1576 L22: 4.2900 REMARK 3 L33: 1.7547 L12: -1.1212 REMARK 3 L13: 0.7737 L23: -2.2936 REMARK 3 S TENSOR REMARK 3 S11: -0.0807 S12: -0.2231 S13: -0.2150 REMARK 3 S21: -0.5359 S22: 0.1955 S23: 0.1506 REMARK 3 S31: 0.4264 S32: -0.4137 S33: -0.1148 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3012 26.8894 33.1384 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.0886 REMARK 3 T33: 0.0441 T12: -0.1237 REMARK 3 T13: 0.0351 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.3923 L22: 5.2510 REMARK 3 L33: 3.4641 L12: 0.3312 REMARK 3 L13: -1.1811 L23: -0.5144 REMARK 3 S TENSOR REMARK 3 S11: -0.1443 S12: 0.0141 S13: -0.0853 REMARK 3 S21: -0.3250 S22: -0.0219 S23: -0.1003 REMARK 3 S31: 0.3859 S32: -0.2775 S33: 0.1662 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2332 37.6276 40.2326 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.1592 REMARK 3 T33: 0.1309 T12: -0.0093 REMARK 3 T13: -0.0022 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 3.6543 L22: 17.1829 REMARK 3 L33: 13.4691 L12: 6.8515 REMARK 3 L13: -5.4867 L23: -10.6959 REMARK 3 S TENSOR REMARK 3 S11: 0.1359 S12: -0.2031 S13: 0.4060 REMARK 3 S21: 0.3824 S22: -0.1095 S23: 0.3106 REMARK 3 S31: -0.6832 S32: -0.1190 S33: -0.0264 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 75 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0903 37.8144 26.6047 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.0867 REMARK 3 T33: 0.0757 T12: -0.0888 REMARK 3 T13: -0.0018 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.7983 L22: 2.9251 REMARK 3 L33: 2.8259 L12: 1.1036 REMARK 3 L13: -0.0938 L23: -0.9620 REMARK 3 S TENSOR REMARK 3 S11: -0.1252 S12: -0.0506 S13: 0.0640 REMARK 3 S21: -0.0703 S22: -0.0054 S23: -0.0816 REMARK 3 S31: 0.1349 S32: -0.2810 S33: 0.1306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98248, 0.97874 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M POTASSIUM CITRATE, 0.1M SODIUM REMARK 280 CACODYLATE PH6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 221.63733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.81867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 166.22800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.40933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 277.04667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 221.63733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.81867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 55.40933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 166.22800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 277.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 29.06750 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 50.34639 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.40933 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 ASP A 44 REMARK 465 LEU A 45 REMARK 465 ALA A 46 REMARK 465 GLU A 47 REMARK 465 VAL A 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 LYS A 49 CD CE NZ REMARK 470 LYS A 67 CD CE NZ REMARK 470 ASP A 75 OD1 OD2 REMARK 470 LYS A 89 NZ REMARK 470 LYS A 98 CD CE NZ REMARK 470 GLU A 105 CD OE1 OE2 REMARK 470 LYS B 98 NZ REMARK 470 GLU B 105 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 47.05 -148.42 REMARK 500 ALA B 19 46.43 -149.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2015 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1109 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2093 O REMARK 620 2 SER B 107 O 83.6 REMARK 620 3 HOH B2095 O 98.5 146.0 REMARK 620 4 HOH B2068 O 83.8 131.3 82.4 REMARK 620 5 ASP B 75 OD1 143.2 88.0 108.0 75.2 REMARK 620 6 GLU B 105 O 69.7 102.5 48.7 116.5 146.9 REMARK 620 7 ILE B 74 O 140.7 88.0 68.8 128.2 74.3 74.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1110 DBREF 2VKP A 1 108 UNP Q96KE9 BTBD6_HUMAN 1 108 DBREF 2VKP B 1 108 UNP Q96KE9 BTBD6_HUMAN 1 108 SEQADV 2VKP SER A 0 UNP Q96KE9 EXPRESSION TAG SEQADV 2VKP SER B 0 UNP Q96KE9 EXPRESSION TAG SEQRES 1 A 109 SER MSE PHE ASN ASN GLU LEU MSE ALA ASP VAL HIS PHE SEQRES 2 A 109 VAL VAL GLY PRO PRO GLY ALA THR ARG THR VAL PRO ALA SEQRES 3 A 109 HIS LYS TYR VAL LEU ALA VAL GLY SER SER VAL PHE TYR SEQRES 4 A 109 ALA MSE PHE TYR GLY ASP LEU ALA GLU VAL LYS SER GLU SEQRES 5 A 109 ILE HIS ILE PRO ASP VAL GLU PRO ALA ALA PHE LEU ILE SEQRES 6 A 109 LEU LEU LYS TYR MSE TYR SER ASP GLU ILE ASP LEU GLU SEQRES 7 A 109 ALA ASP THR VAL LEU ALA THR LEU TYR ALA ALA LYS LYS SEQRES 8 A 109 TYR ILE VAL PRO ALA LEU ALA LYS ALA CYS VAL ASN PHE SEQRES 9 A 109 LEU GLU THR SER LEU SEQRES 1 B 109 SER MSE PHE ASN ASN GLU LEU MSE ALA ASP VAL HIS PHE SEQRES 2 B 109 VAL VAL GLY PRO PRO GLY ALA THR ARG THR VAL PRO ALA SEQRES 3 B 109 HIS LYS TYR VAL LEU ALA VAL GLY SER SER VAL PHE TYR SEQRES 4 B 109 ALA MSE PHE TYR GLY ASP LEU ALA GLU VAL LYS SER GLU SEQRES 5 B 109 ILE HIS ILE PRO ASP VAL GLU PRO ALA ALA PHE LEU ILE SEQRES 6 B 109 LEU LEU LYS TYR MSE TYR SER ASP GLU ILE ASP LEU GLU SEQRES 7 B 109 ALA ASP THR VAL LEU ALA THR LEU TYR ALA ALA LYS LYS SEQRES 8 B 109 TYR ILE VAL PRO ALA LEU ALA LYS ALA CYS VAL ASN PHE SEQRES 9 B 109 LEU GLU THR SER LEU MODRES 2VKP MSE A 1 MET SELENOMETHIONINE MODRES 2VKP MSE A 7 MET SELENOMETHIONINE MODRES 2VKP MSE A 40 MET SELENOMETHIONINE MODRES 2VKP MSE A 69 MET SELENOMETHIONINE MODRES 2VKP MSE B 1 MET SELENOMETHIONINE MODRES 2VKP MSE B 7 MET SELENOMETHIONINE MODRES 2VKP MSE B 40 MET SELENOMETHIONINE MODRES 2VKP MSE B 69 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 7 8 HET MSE A 40 8 HET MSE A 69 8 HET MSE B 1 8 HET MSE B 7 8 HET MSE B 40 8 HET MSE B 69 8 HET K B1109 1 HET EDO B1110 4 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 K K 1+ FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *174(H2 O) HELIX 1 1 HIS A 26 SER A 34 1 9 HELIX 2 2 SER A 34 TYR A 42 1 9 HELIX 3 3 GLU A 58 ASP A 72 1 15 HELIX 4 4 THR A 80 TYR A 91 1 12 HELIX 5 5 VAL A 93 LEU A 108 1 16 HELIX 6 6 HIS B 26 SER B 34 1 9 HELIX 7 7 SER B 34 TYR B 42 1 9 HELIX 8 8 GLU B 58 ASP B 72 1 15 HELIX 9 9 THR B 80 TYR B 91 1 12 HELIX 10 10 VAL B 93 SER B 107 1 15 SHEET 1 AA 3 ARG A 21 ALA A 25 0 SHEET 2 AA 3 VAL A 10 VAL A 14 -1 O VAL A 10 N ALA A 25 SHEET 3 AA 3 GLU A 51 ILE A 54 1 O ILE A 52 N VAL A 13 SHEET 1 BA 3 ARG B 21 ALA B 25 0 SHEET 2 BA 3 VAL B 10 VAL B 14 -1 O VAL B 10 N ALA B 25 SHEET 3 BA 3 GLU B 51 ILE B 54 1 O ILE B 52 N VAL B 13 LINK C SER A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N PHE A 2 1555 1555 1.33 LINK C LEU A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N ALA A 8 1555 1555 1.35 LINK C ALA A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N PHE A 41 1555 1555 1.33 LINK C TYR A 68 N MSE A 69 1555 1555 1.32 LINK C MSE A 69 N TYR A 70 1555 1555 1.33 LINK C SER B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N PHE B 2 1555 1555 1.33 LINK C LEU B 6 N MSE B 7 1555 1555 1.33 LINK C MSE B 7 N ALA B 8 1555 1555 1.34 LINK C ALA B 39 N MSE B 40 1555 1555 1.31 LINK C MSE B 40 N PHE B 41 1555 1555 1.33 LINK C TYR B 68 N MSE B 69 1555 1555 1.34 LINK C MSE B 69 N TYR B 70 1555 1555 1.32 LINK K K B1109 O HOH B2093 1555 10775 2.70 LINK K K B1109 O SER B 107 1555 10775 2.72 LINK K K B1109 O HOH B2095 1555 10775 3.11 LINK K K B1109 O HOH B2068 1555 1555 2.73 LINK K K B1109 OD1 ASP B 75 1555 1555 2.71 LINK K K B1109 O GLU B 105 1555 10775 3.32 LINK K K B1109 O ILE B 74 1555 1555 2.70 SITE 1 AC1 6 ILE B 74 ASP B 75 GLU B 105 SER B 107 SITE 2 AC1 6 HOH B2068 HOH B2093 SITE 1 AC2 2 LYS B 67 ASP B 75 CRYST1 58.135 58.135 332.456 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017201 0.009931 0.000000 0.00000 SCALE2 0.000000 0.019862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003008 0.00000 MTRIX1 1 -0.874000 -0.486000 0.027000 77.49804 1 MTRIX2 1 -0.486000 0.873000 -0.023000 20.90195 1 MTRIX3 1 -0.012000 -0.033000 -0.999000 41.86135 1