HEADER TRANSFERASE 31-JAN-08 2VN9 TITLE CRYSTAL STRUCTURE OF HUMAN CALCIUM CALMODULIN DEPENDENT PROTEIN KINASE TITLE 2 II DELTA ISOFORM 1, CAMKD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II DELTA COMPND 3 CHAIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: KINASE DOMAIN, RESIDUES 11-309; COMPND 6 SYNONYM: CAM-KINASE II DELTA CHAIN, CAM KINASE II SUBUNIT DELTA, COMPND 7 CAMK-II SUBUNIT DELTA, CALCIUM CALMODULIN DEPENDENT PROTEIN KINASE II COMPND 8 DELTA ISOFORM 1; COMPND 9 EC: 2.7.11.17; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SERINE/THREONINE-PROTEIN KINASE, SERINE-THREONINE KINASE, CELLULAR KEYWDS 2 DIFFERENTIATION, VASCULAR SMOOTH MUSCLE, KINASE, TRANSFERASE, ATP- KEYWDS 3 BINDING, PHOSPHOPROTEIN, CALMODULIN-BINDING, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.K.ROOS,P.RELLOS,E.SALAH,A.C.W.PIKE,O.FEDOROV,E.S.PILKA,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,C.BOUNTRA,S.KNAPP REVDAT 6 13-DEC-23 2VN9 1 REMARK REVDAT 5 13-DEC-17 2VN9 1 SOURCE JRNL REVDAT 4 10-AUG-11 2VN9 1 JRNL REMARK HETSYN FORMUL REVDAT 3 13-JUL-11 2VN9 1 VERSN REVDAT 2 24-FEB-09 2VN9 1 VERSN REVDAT 1 26-FEB-08 2VN9 0 JRNL AUTH P.RELLOS,A.C.W.PIKE,F.H.NIESEN,E.SALAH,W.H.LEE,F.VON DELFT, JRNL AUTH 2 S.KNAPP JRNL TITL STRUCTURE OF THE CAMKIIDELTA/CALMODULIN COMPLEX REVEALS THE JRNL TITL 2 MOLECULAR MECHANISM OF CAMKII KINASE ACTIVATION. JRNL REF PLOS BIOL. V. 8 426 2010 JRNL REFN ISSN 1544-9173 JRNL PMID 20668654 JRNL DOI 10.1371/JOURNAL.PBIO.1000426 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4721 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 58.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -1.72000 REMARK 3 B12 (A**2) : 0.57000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4928 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3332 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6686 ; 1.425 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8071 ; 0.976 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 5.808 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;33.025 ;23.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 820 ;14.525 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;21.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 725 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5440 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 980 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3000 ; 1.684 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1210 ; 0.870 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4823 ; 2.481 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1928 ; 4.495 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1857 ; 5.576 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A -1 A 309 1 REMARK 3 1 B -1 B 309 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3959 ; 0.04 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 3959 ; 0.04 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3959 ; 0.16 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 3959 ; 0.16 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4802 37.9307 55.7746 REMARK 3 T TENSOR REMARK 3 T11: -0.4185 T22: 0.1348 REMARK 3 T33: 0.0596 T12: -0.0372 REMARK 3 T13: 0.0242 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 4.7580 L22: 8.4180 REMARK 3 L33: 11.6520 L12: 0.4387 REMARK 3 L13: 0.7231 L23: 1.9160 REMARK 3 S TENSOR REMARK 3 S11: -0.3062 S12: -0.3087 S13: 0.5231 REMARK 3 S21: -0.0987 S22: 0.1327 S23: 0.2238 REMARK 3 S31: -0.7694 S32: -0.4147 S33: 0.1735 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2753 30.2185 53.5075 REMARK 3 T TENSOR REMARK 3 T11: -0.4955 T22: 0.1371 REMARK 3 T33: -0.1308 T12: -0.0343 REMARK 3 T13: 0.0055 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 6.7529 L22: 1.8197 REMARK 3 L33: 1.3251 L12: -3.0149 REMARK 3 L13: -0.3544 L23: 0.9449 REMARK 3 S TENSOR REMARK 3 S11: -0.1694 S12: -0.3660 S13: 0.4505 REMARK 3 S21: 0.0963 S22: 0.0796 S23: 0.0180 REMARK 3 S31: -0.0176 S32: -0.1205 S33: 0.0898 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0084 15.6757 36.1947 REMARK 3 T TENSOR REMARK 3 T11: -0.2976 T22: 0.1063 REMARK 3 T33: -0.1776 T12: -0.1446 REMARK 3 T13: 0.0777 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 3.3598 L22: 1.9079 REMARK 3 L33: 2.0951 L12: 0.5050 REMARK 3 L13: -0.2368 L23: 1.2558 REMARK 3 S TENSOR REMARK 3 S11: -0.2771 S12: 0.6060 S13: -0.3184 REMARK 3 S21: -0.4213 S22: 0.2423 S23: -0.1134 REMARK 3 S31: 0.1423 S32: -0.0756 S33: 0.0348 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 39 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5939 57.9775 -6.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: -0.0916 REMARK 3 T33: 0.0591 T12: -0.2799 REMARK 3 T13: -0.1864 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 7.4621 L22: 7.4556 REMARK 3 L33: 10.1546 L12: 0.7162 REMARK 3 L13: 1.0051 L23: -0.3826 REMARK 3 S TENSOR REMARK 3 S11: -0.2801 S12: -0.0299 S13: 0.4969 REMARK 3 S21: -0.4617 S22: 0.2955 S23: 0.2677 REMARK 3 S31: -0.3389 S32: -0.6191 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 83 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7954 65.3807 -1.3540 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: -0.1521 REMARK 3 T33: -0.1419 T12: -0.3370 REMARK 3 T13: -0.1012 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.2188 L22: 8.9965 REMARK 3 L33: 3.5945 L12: 0.3249 REMARK 3 L13: 0.7225 L23: -2.1354 REMARK 3 S TENSOR REMARK 3 S11: -0.3533 S12: 0.0536 S13: 0.2378 REMARK 3 S21: -0.9819 S22: 0.1194 S23: 0.2851 REMARK 3 S31: -0.1204 S32: 0.0687 S33: 0.2339 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 84 B 309 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0597 54.9420 19.5083 REMARK 3 T TENSOR REMARK 3 T11: -0.1601 T22: 0.0152 REMARK 3 T33: -0.2501 T12: -0.1217 REMARK 3 T13: 0.0039 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.5556 L22: 4.0334 REMARK 3 L33: 5.6129 L12: 0.1549 REMARK 3 L13: 1.6079 L23: -2.5982 REMARK 3 S TENSOR REMARK 3 S11: -0.2961 S12: -0.5224 S13: 0.1137 REMARK 3 S21: 0.1363 S22: 0.1430 S23: 0.0182 REMARK 3 S31: -0.4519 S32: -0.3415 S33: 0.1531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2VN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1290035204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98248 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V7O REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M NAKPO4 HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 208.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.48333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.48333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 208.96667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 LYS A 22 CE NZ REMARK 470 PHE A 25 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 49 CE NZ REMARK 470 LYS A 69 CE NZ REMARK 470 GLN A 165 CD OE1 NE2 REMARK 470 GLN A 168 CD OE1 NE2 REMARK 470 ARG A 187 CZ NH1 NH2 REMARK 470 LYS A 188 NZ REMARK 470 ARG A 221 CZ NH1 NH2 REMARK 470 GLN A 224 CD OE1 NE2 REMARK 470 LYS A 259 NZ REMARK 470 LYS A 292 CE NZ REMARK 470 LYS A 299 CE NZ REMARK 470 LEU A 309 CG CD1 CD2 REMARK 470 SER B -1 OG REMARK 470 LEU B 16 CG CD1 CD2 REMARK 470 LYS B 22 CE NZ REMARK 470 PHE B 25 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 48 CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS B 69 CE NZ REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 470 GLN B 168 CD OE1 NE2 REMARK 470 LYS B 188 CE NZ REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 LYS B 259 CD CE NZ REMARK 470 LYS B 268 CE NZ REMARK 470 LYS B 292 CD CE NZ REMARK 470 LYS B 293 CD CE NZ REMARK 470 LYS B 299 CE NZ REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 LEU B 309 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 298 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 -136.38 -116.79 REMARK 500 PHE A 25 31.13 -171.85 REMARK 500 ASP A 136 46.64 -149.72 REMARK 500 ASP A 157 92.42 55.20 REMARK 500 LYS A 301 -143.04 67.00 REMARK 500 PHE B 17 -135.64 -118.09 REMARK 500 PHE B 25 29.91 -171.19 REMARK 500 ASP B 136 47.14 -147.49 REMARK 500 ASP B 157 92.45 57.38 REMARK 500 PHE B 233 68.62 -119.10 REMARK 500 ARG B 284 62.05 -117.61 REMARK 500 LYS B 301 -150.37 68.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GVD B 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GVD A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1313 DBREF 2VN9 A -1 0 PDB 2VN9 2VN9 -1 0 DBREF 2VN9 A 11 309 UNP Q13557 KCC2D_HUMAN 11 309 DBREF 2VN9 B -1 0 PDB 2VN9 2VN9 -1 0 DBREF 2VN9 B 11 309 UNP Q13557 KCC2D_HUMAN 11 309 SEQRES 1 A 301 SER MET THR ASP GLU TYR GLN LEU PHE GLU GLU LEU GLY SEQRES 2 A 301 LYS GLY ALA PHE SER VAL VAL ARG ARG CYS MET LYS ILE SEQRES 3 A 301 PRO THR GLY GLN GLU TYR ALA ALA LYS ILE ILE ASN THR SEQRES 4 A 301 LYS LYS LEU SER ALA ARG ASP HIS GLN LYS LEU GLU ARG SEQRES 5 A 301 GLU ALA ARG ILE CYS ARG LEU LEU LYS HIS PRO ASN ILE SEQRES 6 A 301 VAL ARG LEU HIS ASP SER ILE SER GLU GLU GLY PHE HIS SEQRES 7 A 301 TYR LEU VAL PHE ASP LEU VAL THR GLY GLY GLU LEU PHE SEQRES 8 A 301 GLU ASP ILE VAL ALA ARG GLU TYR TYR SER GLU ALA ASP SEQRES 9 A 301 ALA SER HIS CYS ILE GLN GLN ILE LEU GLU SER VAL ASN SEQRES 10 A 301 HIS CYS HIS LEU ASN GLY ILE VAL HIS ARG ASP LEU LYS SEQRES 11 A 301 PRO GLU ASN LEU LEU LEU ALA SER LYS SER LYS GLY ALA SEQRES 12 A 301 ALA VAL LYS LEU ALA ASP PHE GLY LEU ALA ILE GLU VAL SEQRES 13 A 301 GLN GLY ASP GLN GLN ALA TRP PHE GLY PHE ALA GLY THR SEQRES 14 A 301 PRO GLY TYR LEU SER PRO GLU VAL LEU ARG LYS ASP PRO SEQRES 15 A 301 TYR GLY LYS PRO VAL ASP MET TRP ALA CYS GLY VAL ILE SEQRES 16 A 301 LEU TYR ILE LEU LEU VAL GLY TYR PRO PRO PHE TRP ASP SEQRES 17 A 301 GLU ASP GLN HIS ARG LEU TYR GLN GLN ILE LYS ALA GLY SEQRES 18 A 301 ALA TYR ASP PHE PRO SER PRO GLU TRP ASP THR VAL THR SEQRES 19 A 301 PRO GLU ALA LYS ASP LEU ILE ASN LYS MET LEU THR ILE SEQRES 20 A 301 ASN PRO ALA LYS ARG ILE THR ALA SER GLU ALA LEU LYS SEQRES 21 A 301 HIS PRO TRP ILE CYS GLN ARG SER THR VAL ALA SER MET SEQRES 22 A 301 MET HIS ARG GLN GLU THR VAL ASP CYS LEU LYS LYS PHE SEQRES 23 A 301 ASN ALA ARG ARG LYS LEU LYS GLY ALA ILE LEU THR THR SEQRES 24 A 301 MET LEU SEQRES 1 B 301 SER MET THR ASP GLU TYR GLN LEU PHE GLU GLU LEU GLY SEQRES 2 B 301 LYS GLY ALA PHE SER VAL VAL ARG ARG CYS MET LYS ILE SEQRES 3 B 301 PRO THR GLY GLN GLU TYR ALA ALA LYS ILE ILE ASN THR SEQRES 4 B 301 LYS LYS LEU SER ALA ARG ASP HIS GLN LYS LEU GLU ARG SEQRES 5 B 301 GLU ALA ARG ILE CYS ARG LEU LEU LYS HIS PRO ASN ILE SEQRES 6 B 301 VAL ARG LEU HIS ASP SER ILE SER GLU GLU GLY PHE HIS SEQRES 7 B 301 TYR LEU VAL PHE ASP LEU VAL THR GLY GLY GLU LEU PHE SEQRES 8 B 301 GLU ASP ILE VAL ALA ARG GLU TYR TYR SER GLU ALA ASP SEQRES 9 B 301 ALA SER HIS CYS ILE GLN GLN ILE LEU GLU SER VAL ASN SEQRES 10 B 301 HIS CYS HIS LEU ASN GLY ILE VAL HIS ARG ASP LEU LYS SEQRES 11 B 301 PRO GLU ASN LEU LEU LEU ALA SER LYS SER LYS GLY ALA SEQRES 12 B 301 ALA VAL LYS LEU ALA ASP PHE GLY LEU ALA ILE GLU VAL SEQRES 13 B 301 GLN GLY ASP GLN GLN ALA TRP PHE GLY PHE ALA GLY THR SEQRES 14 B 301 PRO GLY TYR LEU SER PRO GLU VAL LEU ARG LYS ASP PRO SEQRES 15 B 301 TYR GLY LYS PRO VAL ASP MET TRP ALA CYS GLY VAL ILE SEQRES 16 B 301 LEU TYR ILE LEU LEU VAL GLY TYR PRO PRO PHE TRP ASP SEQRES 17 B 301 GLU ASP GLN HIS ARG LEU TYR GLN GLN ILE LYS ALA GLY SEQRES 18 B 301 ALA TYR ASP PHE PRO SER PRO GLU TRP ASP THR VAL THR SEQRES 19 B 301 PRO GLU ALA LYS ASP LEU ILE ASN LYS MET LEU THR ILE SEQRES 20 B 301 ASN PRO ALA LYS ARG ILE THR ALA SER GLU ALA LEU LYS SEQRES 21 B 301 HIS PRO TRP ILE CYS GLN ARG SER THR VAL ALA SER MET SEQRES 22 B 301 MET HIS ARG GLN GLU THR VAL ASP CYS LEU LYS LYS PHE SEQRES 23 B 301 ASN ALA ARG ARG LYS LEU LYS GLY ALA ILE LEU THR THR SEQRES 24 B 301 MET LEU HET PO4 A1310 5 HET PO4 A1311 5 HET CL A1312 1 HET EPE A1313 15 HET GVD A1314 29 HET GVD B1310 29 HET PO4 B1311 5 HET PO4 B1312 5 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM GVD [4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL) HETNAM 2 GVD AMINO]QUINAZOLIN-2-YL}IMINO)CYCLOHEXA-2,5-DIEN-1- HETNAM 3 GVD YL]ACETONITRILE HETSYN EPE HEPES FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 CL CL 1- FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 7 GVD 2(C22 H19 N7) FORMUL 11 HOH *97(H2 O) HELIX 1 1 SER A -1 GLU A 13 1 5 HELIX 2 2 SER A 51 LEU A 68 1 18 HELIX 3 3 GLU A 97 ARG A 105 1 9 HELIX 4 4 SER A 109 ASN A 130 1 22 HELIX 5 5 LYS A 138 GLU A 140 5 3 HELIX 6 6 THR A 177 LEU A 181 5 5 HELIX 7 7 SER A 182 ARG A 187 1 6 HELIX 8 8 LYS A 193 GLY A 210 1 18 HELIX 9 9 ASP A 218 GLY A 229 1 12 HELIX 10 10 PRO A 236 VAL A 241 5 6 HELIX 11 11 THR A 242 LEU A 253 1 12 HELIX 12 12 THR A 262 LEU A 267 1 6 HELIX 13 13 HIS A 269 GLN A 274 1 6 HELIX 14 14 GLN A 274 ALA A 279 1 6 HELIX 15 15 ARG A 284 LEU A 300 1 17 HELIX 16 16 SER B -1 GLU B 13 1 5 HELIX 17 17 SER B 51 LEU B 68 1 18 HELIX 18 18 GLU B 97 ALA B 104 1 8 HELIX 19 19 SER B 109 ASN B 130 1 22 HELIX 20 20 LYS B 138 GLU B 140 5 3 HELIX 21 21 THR B 177 LEU B 181 5 5 HELIX 22 22 SER B 182 ARG B 187 1 6 HELIX 23 23 LYS B 193 GLY B 210 1 18 HELIX 24 24 ASP B 218 ALA B 228 1 11 HELIX 25 25 THR B 242 LEU B 253 1 12 HELIX 26 26 THR B 262 LEU B 267 1 6 HELIX 27 27 HIS B 269 GLN B 274 1 6 HELIX 28 28 GLN B 274 ALA B 279 1 6 HELIX 29 29 ARG B 284 LEU B 300 1 17 SHEET 1 AA 5 TYR A 14 LYS A 22 0 SHEET 2 AA 5 SER A 26 LYS A 33 -1 O VAL A 28 N LEU A 20 SHEET 3 AA 5 GLU A 39 ASN A 46 -1 O TYR A 40 N CYS A 31 SHEET 4 AA 5 PHE A 85 ASP A 91 -1 O HIS A 86 N ILE A 45 SHEET 5 AA 5 LEU A 76 GLU A 82 -1 N HIS A 77 O VAL A 89 SHEET 1 AB 2 ILE A 132 VAL A 133 0 SHEET 2 AB 2 ILE A 162 GLU A 163 -1 O ILE A 162 N VAL A 133 SHEET 1 AC 2 LEU A 142 LEU A 144 0 SHEET 2 AC 2 VAL A 153 LEU A 155 -1 O LYS A 154 N LEU A 143 SHEET 1 BA 5 TYR B 14 LYS B 22 0 SHEET 2 BA 5 SER B 26 LYS B 33 -1 O VAL B 28 N LEU B 20 SHEET 3 BA 5 GLU B 39 ASN B 46 -1 O TYR B 40 N CYS B 31 SHEET 4 BA 5 PHE B 85 ASP B 91 -1 O HIS B 86 N ILE B 45 SHEET 5 BA 5 LEU B 76 GLU B 82 -1 N HIS B 77 O VAL B 89 SHEET 1 BB 2 ILE B 132 VAL B 133 0 SHEET 2 BB 2 ILE B 162 GLU B 163 -1 O ILE B 162 N VAL B 133 SHEET 1 BC 2 LEU B 142 LEU B 144 0 SHEET 2 BC 2 VAL B 153 LEU B 155 -1 O LYS B 154 N LEU B 143 CISPEP 1 ILE A 34 PRO A 35 0 -3.92 CISPEP 2 SER A 235 PRO A 236 0 -0.64 CISPEP 3 ILE B 34 PRO B 35 0 -5.67 CISPEP 4 SER B 235 PRO B 236 0 0.43 SITE 1 AC1 9 LEU B 20 LYS B 22 ALA B 41 LYS B 43 SITE 2 AC1 9 ASP B 91 LEU B 92 VAL B 93 ASP B 157 SITE 3 AC1 9 PO4 B1312 SITE 1 AC2 11 LEU A 20 LYS A 22 VAL A 28 ALA A 41 SITE 2 AC2 11 LYS A 43 PHE A 90 ASP A 91 LEU A 92 SITE 3 AC2 11 VAL A 93 ASP A 157 PO4 A1311 SITE 1 AC3 9 THR A 47 HIS A 55 SER A 81 GLU A 82 SITE 2 AC3 9 PHE A 85 HIS A 86 SER A 148 LYS A 149 SITE 3 AC3 9 HOH A2072 SITE 1 AC4 8 THR B 47 HIS B 55 SER B 81 GLU B 82 SITE 2 AC4 8 PHE B 85 HIS B 86 SER B 148 LYS B 149 SITE 1 AC5 2 LEU B 20 GVD B1310 SITE 1 AC6 4 LEU A 20 GLY A 21 GVD A1314 HOH A2073 SITE 1 AC7 2 ARG A 75 HIS A 77 SITE 1 AC8 8 TYR A 107 SER A 109 ALA A 111 ASP A 112 SITE 2 AC8 8 ARG A 275 SER A 276 MET A 281 HOH A2029 CRYST1 68.276 68.276 313.450 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014646 0.008456 0.000000 0.00000 SCALE2 0.000000 0.016912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003190 0.00000 MTRIX1 1 -0.501000 -0.820000 0.275000 13.43522 1 MTRIX2 1 -0.865000 0.480000 -0.145000 58.73976 1 MTRIX3 1 -0.013000 -0.311000 -0.950000 58.85304 1