data_2VNF # _entry.id 2VNF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VNF pdb_00002vnf 10.2210/pdb2vnf/pdb PDBE EBI-34935 ? ? WWPDB D_1290034935 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VNF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-02-04 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Palacios, A.' 1 'Munoz, I.G.' 2 'Pantoja-Uceda, D.' 3 'Marcaida, M.J.' 4 'Torres, D.' 5 'Martin-Garcia, J.M.' 6 'Luque, I.' 7 'Montoya, G.' 8 'Blanco, F.J.' 9 # _citation.id primary _citation.title 'Molecular Basis of Histone H3K4Me3 Recognition by Ing4' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 15956 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18381289 _citation.pdbx_database_id_DOI 10.1074/JBC.M710020200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Palacios, A.' 1 ? primary 'Munoz, I.G.' 2 ? primary 'Pantoja-Uceda, D.' 3 ? primary 'Marcaida, M.J.' 4 ? primary 'Torres, D.' 5 ? primary 'Martin-Garcia, J.M.' 6 ? primary 'Luque, I.' 7 ? primary 'Montoya, G.' 8 ? primary 'Blanco, F.J.' 9 ? # _cell.entry_id 2VNF _cell.length_a 68.516 _cell.length_b 68.516 _cell.length_c 28.174 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VNF _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'INHIBITOR OF GROWTH PROTEIN 4' 6937.936 2 ? ? 'RESIDUES 187-245' ? 2 polymer syn 'HISTONE H3' 1192.412 2 ? ? 'RESIDUES 2-11' ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 2,3-DIHYDROXY-1,4-DITHIOBUTANE 154.251 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 6 non-polymer syn '(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL' 154.251 1 ? ? ? ? 7 water nat water 18.015 127 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ING 4, P29ING4' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER A,C ? 2 'polypeptide(L)' no yes 'ART(M3L)QTARKS' ARTKQTARKS B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 MET n 1 4 PRO n 1 5 VAL n 1 6 ASP n 1 7 PRO n 1 8 ASN n 1 9 GLU n 1 10 PRO n 1 11 THR n 1 12 TYR n 1 13 CYS n 1 14 LEU n 1 15 CYS n 1 16 HIS n 1 17 GLN n 1 18 VAL n 1 19 SER n 1 20 TYR n 1 21 GLY n 1 22 GLU n 1 23 MET n 1 24 ILE n 1 25 GLY n 1 26 CYS n 1 27 ASP n 1 28 ASN n 1 29 PRO n 1 30 ASP n 1 31 CYS n 1 32 SER n 1 33 ILE n 1 34 GLU n 1 35 TRP n 1 36 PHE n 1 37 HIS n 1 38 PHE n 1 39 ALA n 1 40 CYS n 1 41 VAL n 1 42 GLY n 1 43 LEU n 1 44 THR n 1 45 THR n 1 46 LYS n 1 47 PRO n 1 48 ARG n 1 49 GLY n 1 50 LYS n 1 51 TRP n 1 52 PHE n 1 53 CYS n 1 54 PRO n 1 55 ARG n 1 56 CYS n 1 57 SER n 1 58 GLN n 1 59 GLU n 1 60 ARG n 2 1 ALA n 2 2 ARG n 2 3 THR n 2 4 M3L n 2 5 GLN n 2 6 THR n 2 7 ALA n 2 8 ARG n 2 9 LYS n 2 10 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11D _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP ING4_HUMAN 1 ? ? Q9UNL4 ? 2 UNP Q5TEC6_HUMAN 2 ? ? Q5TEC6 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VNF A 2 ? 60 ? Q9UNL4 188 ? 246 ? 188 246 2 2 2VNF B 1 ? 10 ? Q5TEC6 2 ? 11 ? 1 10 3 1 2VNF C 2 ? 60 ? Q9UNL4 188 ? 246 ? 188 246 4 2 2VNF D 1 ? 10 ? Q5TEC6 2 ? 11 ? 1 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2VNF MET A 1 ? UNP Q9UNL4 ? ? 'expression tag' 187 1 3 2VNF MET C 1 ? UNP Q9UNL4 ? ? 'expression tag' 187 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DTT non-polymer . 2,3-DIHYDROXY-1,4-DITHIOBUTANE 1,4-DITHIOTHREITOL 'C4 H10 O2 S2' 154.251 DTU non-polymer . '(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL' ? 'C4 H10 O2 S2' 154.251 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2VNF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.11 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-09-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.983 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.983 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VNF _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 68.51 _reflns.d_resolution_high 1.76 _reflns.number_obs 12178 _reflns.number_all ? _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.90 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.76 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 86.8 _reflns_shell.Rmerge_I_obs 0.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.70 _reflns_shell.pdbx_redundancy 2.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VNF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12178 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 68.51 _refine.ls_d_res_high 1.76 _refine.ls_percent_reflns_obs 96.9 _refine.ls_R_factor_obs 0.160 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.156 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 635 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 31.69 _refine.aniso_B[1][1] -0.55000 _refine.aniso_B[2][2] -0.55000 _refine.aniso_B[3][3] 1.09000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2G6Q' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.198 _refine.pdbx_overall_ESU_R_Free 0.124 _refine.overall_SU_ML 0.077 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.340 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 942 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1090 _refine_hist.d_res_high 1.76 _refine_hist.d_res_low 68.51 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 994 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.816 1.951 ? 1345 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 12.226 5.000 ? 118 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.318 23.182 ? 44 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.534 15.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.705 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.179 0.200 ? 140 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 752 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.328 0.200 ? 546 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.318 0.200 ? 687 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.511 0.200 ? 100 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.391 0.200 ? 42 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.829 0.200 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.343 1.500 ? 601 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4.771 2.000 ? 966 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 7.057 3.000 ? 417 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 9.192 4.500 ? 379 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.76 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 757 _refine_ls_shell.R_factor_R_work 0.1630 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2750 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VNF _struct.title 'MOLECULAR BASIS OF HISTONE H3K4ME3 RECOGNITION BY ING4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VNF _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'ACETYLATION, ALTERNATIVE SPLICING, ANTI-ONCOGENE, CELL CYCLE, COILED C NUCLEUS, ZINC, ZINC-FINGER, ING4, PHD FINGER, HISTONE 3' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 5 ? K N N 5 ? L N N 7 ? M N N 7 ? N N N 7 ? O N N 7 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 39 ? GLY A 42 ? ALA A 225 GLY A 228 5 ? 4 HELX_P HELX_P2 2 CYS A 53 ? GLN A 58 ? CYS A 239 GLN A 244 1 ? 6 HELX_P HELX_P3 3 ALA C 39 ? GLY C 42 ? ALA C 225 GLY C 228 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B THR 3 C ? ? ? 1_555 B M3L 4 N ? ? B THR 3 B M3L 4 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? B M3L 4 C ? ? ? 1_555 B GLN 5 N ? ? B M3L 4 B GLN 5 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? D THR 3 C ? ? ? 1_555 D M3L 4 N ? ? D THR 3 D M3L 4 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? D M3L 4 C ? ? ? 1_555 D GLN 5 N ? ? D M3L 4 D GLN 5 1_555 ? ? ? ? ? ? ? 1.333 ? ? metalc1 metalc ? ? A CYS 13 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 199 A ZN 1246 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc2 metalc ? ? A CYS 15 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 201 A ZN 1246 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc3 metalc ? ? A CYS 26 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 212 A ZN 1247 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc4 metalc ? ? A CYS 31 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 217 A ZN 1247 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc5 metalc ? ? A HIS 37 ND1 ? ? ? 1_555 G ZN . ZN ? ? A HIS 223 A ZN 1246 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc6 metalc ? ? A CYS 40 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 226 A ZN 1246 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc7 metalc ? ? A CYS 53 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 239 A ZN 1247 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc8 metalc ? ? A CYS 56 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 242 A ZN 1247 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc9 metalc ? ? E NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 300 A HOH 2058 3_554 ? ? ? ? ? ? ? 2.100 ? ? metalc10 metalc ? ? E NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 300 A HOH 2059 3_554 ? ? ? ? ? ? ? 2.279 ? ? metalc11 metalc ? ? E NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 300 A HOH 2061 1_555 ? ? ? ? ? ? ? 2.583 ? ? metalc12 metalc ? ? C CYS 13 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 199 C ZN 1247 1_555 ? ? ? ? ? ? ? 2.326 ? ? metalc13 metalc ? ? C CYS 15 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 201 C ZN 1247 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc14 metalc ? ? C CYS 26 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 212 C ZN 1248 1_555 ? ? ? ? ? ? ? 2.343 ? ? metalc15 metalc ? ? C CYS 31 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 217 C ZN 1248 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc16 metalc ? ? C HIS 37 ND1 ? ? ? 1_555 J ZN . ZN ? ? C HIS 223 C ZN 1247 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc17 metalc ? ? C CYS 40 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 226 C ZN 1247 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc18 metalc ? ? C CYS 53 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 239 C ZN 1248 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc19 metalc ? ? C CYS 56 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 242 C ZN 1248 1_555 ? ? ? ? ? ? ? 2.333 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? CA ? 2 ? CB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel CA 1 2 ? anti-parallel CB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 11 ? TYR A 12 ? THR A 197 TYR A 198 AA 2 GLN A 17 ? VAL A 18 ? GLN A 203 VAL A 204 AB 1 MET A 23 ? GLY A 25 ? MET A 209 GLY A 211 AB 2 TRP A 35 ? HIS A 37 ? TRP A 221 HIS A 223 CA 1 THR C 11 ? TYR C 12 ? THR C 197 TYR C 198 CA 2 GLN C 17 ? VAL C 18 ? GLN C 203 VAL C 204 CB 1 MET C 23 ? GLY C 25 ? MET C 209 GLY C 211 CB 2 TRP C 35 ? HIS C 37 ? TRP C 221 HIS C 223 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 12 ? N TYR A 198 O GLN A 17 ? O GLN A 203 AB 1 2 N ILE A 24 ? N ILE A 210 O PHE A 36 ? O PHE A 222 CA 1 2 N TYR C 12 ? N TYR C 198 O GLN C 17 ? O GLN C 203 CB 1 2 N ILE C 24 ? N ILE C 210 O PHE C 36 ? O PHE C 222 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 300 ? 5 'BINDING SITE FOR RESIDUE NA A 300' AC2 Software A DTT 1245 ? 10 'BINDING SITE FOR RESIDUE DTT A 1245' AC3 Software C DTU 1246 ? 8 'BINDING SITE FOR RESIDUE DTU C 1246' AC4 Software A ZN 1246 ? 4 'BINDING SITE FOR RESIDUE ZN A 1246' AC5 Software C ZN 1247 ? 4 'BINDING SITE FOR RESIDUE ZN C 1247' AC6 Software C ZN 1248 ? 4 'BINDING SITE FOR RESIDUE ZN C 1248' AC7 Software A ZN 1247 ? 4 'BINDING SITE FOR RESIDUE ZN A 1247' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLN A 58 ? GLN A 244 . ? 3_554 ? 2 AC1 5 DTT F . ? DTT A 1245 . ? 1_555 ? 3 AC1 5 HOH L . ? HOH A 2058 . ? 3_554 ? 4 AC1 5 HOH L . ? HOH A 2059 . ? 3_554 ? 5 AC1 5 HOH L . ? HOH A 2061 . ? 1_555 ? 6 AC2 10 CYS A 13 ? CYS A 199 . ? 1_555 ? 7 AC2 10 HIS A 16 ? HIS A 202 . ? 1_555 ? 8 AC2 10 ILE A 33 ? ILE A 219 . ? 1_555 ? 9 AC2 10 NA E . ? NA A 300 . ? 1_555 ? 10 AC2 10 HOH L . ? HOH A 2007 . ? 1_555 ? 11 AC2 10 HOH L . ? HOH A 2025 . ? 3_554 ? 12 AC2 10 HOH L . ? HOH A 2048 . ? 1_554 ? 13 AC2 10 HOH L . ? HOH A 2057 . ? 3_554 ? 14 AC2 10 HOH L . ? HOH A 2060 . ? 3_554 ? 15 AC2 10 HOH L . ? HOH A 2061 . ? 1_555 ? 16 AC3 8 HIS C 16 ? HIS C 202 . ? 1_555 ? 17 AC3 8 ASN C 28 ? ASN C 214 . ? 4_655 ? 18 AC3 8 GLN C 58 ? GLN C 244 . ? 4_655 ? 19 AC3 8 HOH N . ? HOH C 2031 . ? 1_556 ? 20 AC3 8 HOH N . ? HOH C 2036 . ? 4_655 ? 21 AC3 8 HOH N . ? HOH C 2039 . ? 1_555 ? 22 AC3 8 HOH N . ? HOH C 2040 . ? 1_555 ? 23 AC3 8 HOH N . ? HOH C 2041 . ? 1_555 ? 24 AC4 4 CYS A 13 ? CYS A 199 . ? 1_555 ? 25 AC4 4 CYS A 15 ? CYS A 201 . ? 1_555 ? 26 AC4 4 HIS A 37 ? HIS A 223 . ? 1_555 ? 27 AC4 4 CYS A 40 ? CYS A 226 . ? 1_555 ? 28 AC5 4 CYS C 13 ? CYS C 199 . ? 1_555 ? 29 AC5 4 CYS C 15 ? CYS C 201 . ? 1_555 ? 30 AC5 4 HIS C 37 ? HIS C 223 . ? 1_555 ? 31 AC5 4 CYS C 40 ? CYS C 226 . ? 1_555 ? 32 AC6 4 CYS C 26 ? CYS C 212 . ? 1_555 ? 33 AC6 4 CYS C 31 ? CYS C 217 . ? 1_555 ? 34 AC6 4 CYS C 53 ? CYS C 239 . ? 1_555 ? 35 AC6 4 CYS C 56 ? CYS C 242 . ? 1_555 ? 36 AC7 4 CYS A 26 ? CYS A 212 . ? 1_555 ? 37 AC7 4 CYS A 31 ? CYS A 217 . ? 1_555 ? 38 AC7 4 CYS A 53 ? CYS A 239 . ? 1_555 ? 39 AC7 4 CYS A 56 ? CYS A 242 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VNF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VNF _atom_sites.fract_transf_matrix[1][1] 0.014595 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014595 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035494 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 187 ? ? ? A . n A 1 2 ASP 2 188 ? ? ? A . n A 1 3 MET 3 189 ? ? ? A . n A 1 4 PRO 4 190 ? ? ? A . n A 1 5 VAL 5 191 ? ? ? A . n A 1 6 ASP 6 192 ? ? ? A . n A 1 7 PRO 7 193 ? ? ? A . n A 1 8 ASN 8 194 ? ? ? A . n A 1 9 GLU 9 195 195 GLU GLU A . n A 1 10 PRO 10 196 196 PRO PRO A . n A 1 11 THR 11 197 197 THR THR A . n A 1 12 TYR 12 198 198 TYR TYR A . n A 1 13 CYS 13 199 199 CYS CYS A . n A 1 14 LEU 14 200 200 LEU LEU A . n A 1 15 CYS 15 201 201 CYS CYS A . n A 1 16 HIS 16 202 202 HIS HIS A . n A 1 17 GLN 17 203 203 GLN GLN A . n A 1 18 VAL 18 204 204 VAL VAL A . n A 1 19 SER 19 205 205 SER SER A . n A 1 20 TYR 20 206 206 TYR TYR A . n A 1 21 GLY 21 207 207 GLY GLY A . n A 1 22 GLU 22 208 208 GLU GLU A . n A 1 23 MET 23 209 209 MET MET A . n A 1 24 ILE 24 210 210 ILE ILE A . n A 1 25 GLY 25 211 211 GLY GLY A . n A 1 26 CYS 26 212 212 CYS CYS A . n A 1 27 ASP 27 213 213 ASP ASP A . n A 1 28 ASN 28 214 214 ASN ASN A . n A 1 29 PRO 29 215 215 PRO PRO A . n A 1 30 ASP 30 216 216 ASP ASP A . n A 1 31 CYS 31 217 217 CYS CYS A . n A 1 32 SER 32 218 218 SER SER A . n A 1 33 ILE 33 219 219 ILE ILE A . n A 1 34 GLU 34 220 220 GLU GLU A . n A 1 35 TRP 35 221 221 TRP TRP A . n A 1 36 PHE 36 222 222 PHE PHE A . n A 1 37 HIS 37 223 223 HIS HIS A . n A 1 38 PHE 38 224 224 PHE PHE A . n A 1 39 ALA 39 225 225 ALA ALA A . n A 1 40 CYS 40 226 226 CYS CYS A . n A 1 41 VAL 41 227 227 VAL VAL A . n A 1 42 GLY 42 228 228 GLY GLY A . n A 1 43 LEU 43 229 229 LEU LEU A . n A 1 44 THR 44 230 230 THR THR A . n A 1 45 THR 45 231 231 THR THR A . n A 1 46 LYS 46 232 232 LYS LYS A . n A 1 47 PRO 47 233 233 PRO PRO A . n A 1 48 ARG 48 234 234 ARG ARG A . n A 1 49 GLY 49 235 235 GLY GLY A . n A 1 50 LYS 50 236 236 LYS LYS A . n A 1 51 TRP 51 237 237 TRP TRP A . n A 1 52 PHE 52 238 238 PHE PHE A . n A 1 53 CYS 53 239 239 CYS CYS A . n A 1 54 PRO 54 240 240 PRO PRO A . n A 1 55 ARG 55 241 241 ARG ARG A . n A 1 56 CYS 56 242 242 CYS CYS A . n A 1 57 SER 57 243 243 SER SER A . n A 1 58 GLN 58 244 244 GLN GLN A . n A 1 59 GLU 59 245 ? ? ? A . n A 1 60 ARG 60 246 ? ? ? A . n B 2 1 ALA 1 1 1 ALA ALA B . n B 2 2 ARG 2 2 2 ARG ARG B . n B 2 3 THR 3 3 3 THR THR B . n B 2 4 M3L 4 4 4 M3L M3L B . n B 2 5 GLN 5 5 5 GLN GLN B . n B 2 6 THR 6 6 6 THR THR B . n B 2 7 ALA 7 7 ? ? ? B . n B 2 8 ARG 8 8 ? ? ? B . n B 2 9 LYS 9 9 ? ? ? B . n B 2 10 SER 10 10 ? ? ? B . n C 1 1 MET 1 187 ? ? ? C . n C 1 2 ASP 2 188 ? ? ? C . n C 1 3 MET 3 189 ? ? ? C . n C 1 4 PRO 4 190 ? ? ? C . n C 1 5 VAL 5 191 191 VAL VAL C . n C 1 6 ASP 6 192 192 ASP ASP C . n C 1 7 PRO 7 193 193 PRO PRO C . n C 1 8 ASN 8 194 194 ASN ASN C . n C 1 9 GLU 9 195 195 GLU GLU C . n C 1 10 PRO 10 196 196 PRO PRO C . n C 1 11 THR 11 197 197 THR THR C . n C 1 12 TYR 12 198 198 TYR TYR C . n C 1 13 CYS 13 199 199 CYS CYS C . n C 1 14 LEU 14 200 200 LEU LEU C . n C 1 15 CYS 15 201 201 CYS CYS C . n C 1 16 HIS 16 202 202 HIS HIS C . n C 1 17 GLN 17 203 203 GLN GLN C . n C 1 18 VAL 18 204 204 VAL VAL C . n C 1 19 SER 19 205 205 SER SER C . n C 1 20 TYR 20 206 206 TYR TYR C . n C 1 21 GLY 21 207 207 GLY GLY C . n C 1 22 GLU 22 208 208 GLU GLU C . n C 1 23 MET 23 209 209 MET MET C . n C 1 24 ILE 24 210 210 ILE ILE C . n C 1 25 GLY 25 211 211 GLY GLY C . n C 1 26 CYS 26 212 212 CYS CYS C . n C 1 27 ASP 27 213 213 ASP ASP C . n C 1 28 ASN 28 214 214 ASN ASN C . n C 1 29 PRO 29 215 215 PRO PRO C . n C 1 30 ASP 30 216 216 ASP ASP C . n C 1 31 CYS 31 217 217 CYS CYS C . n C 1 32 SER 32 218 218 SER SER C . n C 1 33 ILE 33 219 219 ILE ILE C . n C 1 34 GLU 34 220 220 GLU GLU C . n C 1 35 TRP 35 221 221 TRP TRP C . n C 1 36 PHE 36 222 222 PHE PHE C . n C 1 37 HIS 37 223 223 HIS HIS C . n C 1 38 PHE 38 224 224 PHE PHE C . n C 1 39 ALA 39 225 225 ALA ALA C . n C 1 40 CYS 40 226 226 CYS CYS C . n C 1 41 VAL 41 227 227 VAL VAL C . n C 1 42 GLY 42 228 228 GLY GLY C . n C 1 43 LEU 43 229 229 LEU LEU C . n C 1 44 THR 44 230 230 THR THR C . n C 1 45 THR 45 231 231 THR THR C . n C 1 46 LYS 46 232 232 LYS LYS C . n C 1 47 PRO 47 233 233 PRO PRO C . n C 1 48 ARG 48 234 234 ARG ARG C . n C 1 49 GLY 49 235 235 GLY GLY C . n C 1 50 LYS 50 236 236 LYS LYS C . n C 1 51 TRP 51 237 237 TRP TRP C . n C 1 52 PHE 52 238 238 PHE PHE C . n C 1 53 CYS 53 239 239 CYS CYS C . n C 1 54 PRO 54 240 240 PRO PRO C . n C 1 55 ARG 55 241 241 ARG ARG C . n C 1 56 CYS 56 242 242 CYS CYS C . n C 1 57 SER 57 243 243 SER SER C . n C 1 58 GLN 58 244 244 GLN GLN C . n C 1 59 GLU 59 245 ? ? ? C . n C 1 60 ARG 60 246 ? ? ? C . n D 2 1 ALA 1 1 1 ALA ALA D . n D 2 2 ARG 2 2 2 ARG ARG D . n D 2 3 THR 3 3 3 THR THR D . n D 2 4 M3L 4 4 4 M3L M3L D . n D 2 5 GLN 5 5 5 GLN GLN D . n D 2 6 THR 6 6 6 THR THR D . n D 2 7 ALA 7 7 7 ALA ALA D . n D 2 8 ARG 8 8 8 ARG ARG D . n D 2 9 LYS 9 9 9 LYS LYS D . n D 2 10 SER 10 10 10 SER SER D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA 1 300 300 NA NA A . F 4 DTT 1 1245 1245 DTT DTT A . G 5 ZN 1 1246 1246 ZN ZN A . H 5 ZN 1 1247 1247 ZN ZN A . I 6 DTU 1 1246 1246 DTU DTU C . J 5 ZN 1 1247 1247 ZN ZN C . K 5 ZN 1 1248 1248 ZN ZN C . L 7 HOH 1 2001 2001 HOH HOH A . L 7 HOH 2 2002 2002 HOH HOH A . L 7 HOH 3 2003 2003 HOH HOH A . L 7 HOH 4 2004 2004 HOH HOH A . L 7 HOH 5 2005 2005 HOH HOH A . L 7 HOH 6 2006 2006 HOH HOH A . L 7 HOH 7 2007 2007 HOH HOH A . L 7 HOH 8 2008 2008 HOH HOH A . L 7 HOH 9 2009 2009 HOH HOH A . L 7 HOH 10 2010 2010 HOH HOH A . L 7 HOH 11 2011 2011 HOH HOH A . L 7 HOH 12 2012 2012 HOH HOH A . L 7 HOH 13 2013 2013 HOH HOH A . L 7 HOH 14 2014 2014 HOH HOH A . L 7 HOH 15 2015 2015 HOH HOH A . L 7 HOH 16 2016 2016 HOH HOH A . L 7 HOH 17 2017 2017 HOH HOH A . L 7 HOH 18 2018 2018 HOH HOH A . L 7 HOH 19 2019 2019 HOH HOH A . L 7 HOH 20 2020 2020 HOH HOH A . L 7 HOH 21 2021 2021 HOH HOH A . L 7 HOH 22 2022 2022 HOH HOH A . L 7 HOH 23 2023 2023 HOH HOH A . L 7 HOH 24 2024 2024 HOH HOH A . L 7 HOH 25 2025 2025 HOH HOH A . L 7 HOH 26 2026 2026 HOH HOH A . L 7 HOH 27 2027 2027 HOH HOH A . L 7 HOH 28 2028 2028 HOH HOH A . L 7 HOH 29 2029 2029 HOH HOH A . L 7 HOH 30 2030 2030 HOH HOH A . L 7 HOH 31 2031 2031 HOH HOH A . L 7 HOH 32 2032 2032 HOH HOH A . L 7 HOH 33 2033 2033 HOH HOH A . L 7 HOH 34 2034 2034 HOH HOH A . L 7 HOH 35 2035 2035 HOH HOH A . L 7 HOH 36 2036 2036 HOH HOH A . L 7 HOH 37 2037 2037 HOH HOH A . L 7 HOH 38 2038 2038 HOH HOH A . L 7 HOH 39 2039 2039 HOH HOH A . L 7 HOH 40 2040 2040 HOH HOH A . L 7 HOH 41 2041 2041 HOH HOH A . L 7 HOH 42 2042 2042 HOH HOH A . L 7 HOH 43 2043 2043 HOH HOH A . L 7 HOH 44 2044 2044 HOH HOH A . L 7 HOH 45 2045 2045 HOH HOH A . L 7 HOH 46 2046 2046 HOH HOH A . L 7 HOH 47 2047 2047 HOH HOH A . L 7 HOH 48 2048 2048 HOH HOH A . L 7 HOH 49 2049 2049 HOH HOH A . L 7 HOH 50 2050 2050 HOH HOH A . L 7 HOH 51 2051 2051 HOH HOH A . L 7 HOH 52 2052 2052 HOH HOH A . L 7 HOH 53 2053 2053 HOH HOH A . L 7 HOH 54 2054 2054 HOH HOH A . L 7 HOH 55 2056 2056 HOH HOH A . L 7 HOH 56 2057 2057 HOH HOH A . L 7 HOH 57 2058 2058 HOH HOH A . L 7 HOH 58 2059 2059 HOH HOH A . L 7 HOH 59 2060 2060 HOH HOH A . L 7 HOH 60 2061 2061 HOH HOH A . M 7 HOH 1 2001 2001 HOH HOH B . M 7 HOH 2 2002 2002 HOH HOH B . M 7 HOH 3 2003 2003 HOH HOH B . M 7 HOH 4 2004 2004 HOH HOH B . M 7 HOH 5 2005 2005 HOH HOH B . M 7 HOH 6 2006 2006 HOH HOH B . M 7 HOH 7 2007 2007 HOH HOH B . M 7 HOH 8 2008 2008 HOH HOH B . N 7 HOH 1 2001 2001 HOH HOH C . N 7 HOH 2 2002 2002 HOH HOH C . N 7 HOH 3 2003 2003 HOH HOH C . N 7 HOH 4 2004 2004 HOH HOH C . N 7 HOH 5 2005 2005 HOH HOH C . N 7 HOH 6 2006 2006 HOH HOH C . N 7 HOH 7 2007 2007 HOH HOH C . N 7 HOH 8 2008 2008 HOH HOH C . N 7 HOH 9 2009 2009 HOH HOH C . N 7 HOH 10 2010 2010 HOH HOH C . N 7 HOH 11 2011 2011 HOH HOH C . N 7 HOH 12 2012 2012 HOH HOH C . N 7 HOH 13 2013 2013 HOH HOH C . N 7 HOH 14 2014 2014 HOH HOH C . N 7 HOH 15 2015 2015 HOH HOH C . N 7 HOH 16 2016 2016 HOH HOH C . N 7 HOH 17 2017 2017 HOH HOH C . N 7 HOH 18 2018 2018 HOH HOH C . N 7 HOH 19 2019 2019 HOH HOH C . N 7 HOH 20 2020 2020 HOH HOH C . N 7 HOH 21 2021 2021 HOH HOH C . N 7 HOH 22 2022 2022 HOH HOH C . N 7 HOH 23 2023 2023 HOH HOH C . N 7 HOH 24 2024 2024 HOH HOH C . N 7 HOH 25 2025 2025 HOH HOH C . N 7 HOH 26 2026 2026 HOH HOH C . N 7 HOH 27 2027 2027 HOH HOH C . N 7 HOH 28 2028 2028 HOH HOH C . N 7 HOH 29 2029 2029 HOH HOH C . N 7 HOH 30 2030 2030 HOH HOH C . N 7 HOH 31 2031 2031 HOH HOH C . N 7 HOH 32 2032 2032 HOH HOH C . N 7 HOH 33 2034 2034 HOH HOH C . N 7 HOH 34 2035 2035 HOH HOH C . N 7 HOH 35 2036 2036 HOH HOH C . N 7 HOH 36 2037 2037 HOH HOH C . N 7 HOH 37 2038 2038 HOH HOH C . N 7 HOH 38 2039 2039 HOH HOH C . N 7 HOH 39 2040 2040 HOH HOH C . N 7 HOH 40 2041 2041 HOH HOH C . O 7 HOH 1 2001 2001 HOH HOH D . O 7 HOH 2 2002 2002 HOH HOH D . O 7 HOH 3 2003 2003 HOH HOH D . O 7 HOH 4 2004 2004 HOH HOH D . O 7 HOH 5 2005 2005 HOH HOH D . O 7 HOH 6 2006 2006 HOH HOH D . O 7 HOH 7 2007 2007 HOH HOH D . O 7 HOH 8 2008 2008 HOH HOH D . O 7 HOH 9 2009 2009 HOH HOH D . O 7 HOH 10 2010 2010 HOH HOH D . O 7 HOH 11 2011 2011 HOH HOH D . O 7 HOH 12 2012 2012 HOH HOH D . O 7 HOH 13 2013 2013 HOH HOH D . O 7 HOH 14 2014 2014 HOH HOH D . O 7 HOH 15 2015 2015 HOH HOH D . O 7 HOH 16 2016 2016 HOH HOH D . O 7 HOH 17 2017 2017 HOH HOH D . O 7 HOH 18 2018 2018 HOH HOH D . O 7 HOH 19 2019 2019 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B M3L 4 B M3L 4 ? LYS N-TRIMETHYLLYSINE 2 D M3L 4 D M3L 4 ? LYS N-TRIMETHYLLYSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 author_and_software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,L,M 2 1 C,D,I,J,K,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1220 ? 1 MORE -4 ? 1 'SSA (A^2)' 4490 ? 2 'ABSA (A^2)' 1520 ? 2 MORE -3 ? 2 'SSA (A^2)' 5330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 13 ? A CYS 199 ? 1_555 ZN ? G ZN . ? A ZN 1246 ? 1_555 SG ? A CYS 15 ? A CYS 201 ? 1_555 116.2 ? 2 SG ? A CYS 13 ? A CYS 199 ? 1_555 ZN ? G ZN . ? A ZN 1246 ? 1_555 ND1 ? A HIS 37 ? A HIS 223 ? 1_555 101.8 ? 3 SG ? A CYS 15 ? A CYS 201 ? 1_555 ZN ? G ZN . ? A ZN 1246 ? 1_555 ND1 ? A HIS 37 ? A HIS 223 ? 1_555 94.6 ? 4 SG ? A CYS 13 ? A CYS 199 ? 1_555 ZN ? G ZN . ? A ZN 1246 ? 1_555 SG ? A CYS 40 ? A CYS 226 ? 1_555 107.6 ? 5 SG ? A CYS 15 ? A CYS 201 ? 1_555 ZN ? G ZN . ? A ZN 1246 ? 1_555 SG ? A CYS 40 ? A CYS 226 ? 1_555 117.0 ? 6 ND1 ? A HIS 37 ? A HIS 223 ? 1_555 ZN ? G ZN . ? A ZN 1246 ? 1_555 SG ? A CYS 40 ? A CYS 226 ? 1_555 118.7 ? 7 SG ? A CYS 26 ? A CYS 212 ? 1_555 ZN ? H ZN . ? A ZN 1247 ? 1_555 SG ? A CYS 31 ? A CYS 217 ? 1_555 110.1 ? 8 SG ? A CYS 26 ? A CYS 212 ? 1_555 ZN ? H ZN . ? A ZN 1247 ? 1_555 SG ? A CYS 53 ? A CYS 239 ? 1_555 115.8 ? 9 SG ? A CYS 31 ? A CYS 217 ? 1_555 ZN ? H ZN . ? A ZN 1247 ? 1_555 SG ? A CYS 53 ? A CYS 239 ? 1_555 112.5 ? 10 SG ? A CYS 26 ? A CYS 212 ? 1_555 ZN ? H ZN . ? A ZN 1247 ? 1_555 SG ? A CYS 56 ? A CYS 242 ? 1_555 108.8 ? 11 SG ? A CYS 31 ? A CYS 217 ? 1_555 ZN ? H ZN . ? A ZN 1247 ? 1_555 SG ? A CYS 56 ? A CYS 242 ? 1_555 106.1 ? 12 SG ? A CYS 53 ? A CYS 239 ? 1_555 ZN ? H ZN . ? A ZN 1247 ? 1_555 SG ? A CYS 56 ? A CYS 242 ? 1_555 102.8 ? 13 O ? L HOH . ? A HOH 2058 ? 3_554 NA ? E NA . ? A NA 300 ? 1_555 O ? L HOH . ? A HOH 2059 ? 3_554 146.8 ? 14 O ? L HOH . ? A HOH 2058 ? 3_554 NA ? E NA . ? A NA 300 ? 1_555 O ? L HOH . ? A HOH 2061 ? 1_555 129.2 ? 15 O ? L HOH . ? A HOH 2059 ? 3_554 NA ? E NA . ? A NA 300 ? 1_555 O ? L HOH . ? A HOH 2061 ? 1_555 64.1 ? 16 SG ? C CYS 13 ? C CYS 199 ? 1_555 ZN ? J ZN . ? C ZN 1247 ? 1_555 SG ? C CYS 15 ? C CYS 201 ? 1_555 116.5 ? 17 SG ? C CYS 13 ? C CYS 199 ? 1_555 ZN ? J ZN . ? C ZN 1247 ? 1_555 ND1 ? C HIS 37 ? C HIS 223 ? 1_555 102.6 ? 18 SG ? C CYS 15 ? C CYS 201 ? 1_555 ZN ? J ZN . ? C ZN 1247 ? 1_555 ND1 ? C HIS 37 ? C HIS 223 ? 1_555 95.3 ? 19 SG ? C CYS 13 ? C CYS 199 ? 1_555 ZN ? J ZN . ? C ZN 1247 ? 1_555 SG ? C CYS 40 ? C CYS 226 ? 1_555 109.3 ? 20 SG ? C CYS 15 ? C CYS 201 ? 1_555 ZN ? J ZN . ? C ZN 1247 ? 1_555 SG ? C CYS 40 ? C CYS 226 ? 1_555 115.4 ? 21 ND1 ? C HIS 37 ? C HIS 223 ? 1_555 ZN ? J ZN . ? C ZN 1247 ? 1_555 SG ? C CYS 40 ? C CYS 226 ? 1_555 116.6 ? 22 SG ? C CYS 26 ? C CYS 212 ? 1_555 ZN ? K ZN . ? C ZN 1248 ? 1_555 SG ? C CYS 31 ? C CYS 217 ? 1_555 111.5 ? 23 SG ? C CYS 26 ? C CYS 212 ? 1_555 ZN ? K ZN . ? C ZN 1248 ? 1_555 SG ? C CYS 53 ? C CYS 239 ? 1_555 116.2 ? 24 SG ? C CYS 31 ? C CYS 217 ? 1_555 ZN ? K ZN . ? C ZN 1248 ? 1_555 SG ? C CYS 53 ? C CYS 239 ? 1_555 108.4 ? 25 SG ? C CYS 26 ? C CYS 212 ? 1_555 ZN ? K ZN . ? C ZN 1248 ? 1_555 SG ? C CYS 56 ? C CYS 242 ? 1_555 109.6 ? 26 SG ? C CYS 31 ? C CYS 217 ? 1_555 ZN ? K ZN . ? C ZN 1248 ? 1_555 SG ? C CYS 56 ? C CYS 242 ? 1_555 109.4 ? 27 SG ? C CYS 53 ? C CYS 239 ? 1_555 ZN ? K ZN . ? C ZN 1248 ? 1_555 SG ? C CYS 56 ? C CYS 242 ? 1_555 101.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-01 2 'Structure model' 1 1 2016-12-28 3 'Structure model' 1 2 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Non-polymer description' 3 2 'Structure model' Other 4 2 'Structure model' 'Source and taxonomy' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Database references' 9 3 'Structure model' 'Derived calculations' 10 3 'Structure model' Other 11 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_conn_type 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 3 'Structure model' '_pdbx_struct_conn_angle.value' 24 3 'Structure model' '_struct_conn.conn_type_id' 25 3 'Structure model' '_struct_conn.id' 26 3 'Structure model' '_struct_conn.pdbx_dist_value' 27 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 28 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 42 3 'Structure model' '_struct_conn.ptnr2_symmetry' 43 3 'Structure model' '_struct_conn_type.id' 44 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 45 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 46 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2VNF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'ING4(RESIDUES 188-246)' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2021 ? ? O A HOH 2022 ? ? 1.15 2 1 N A PRO 240 ? ? O A HOH 2054 ? ? 1.57 3 1 CE1 A HIS 202 ? ? C1 A DTT 1245 ? ? 1.85 4 1 NE2 C HIS 202 ? ? O2 C DTU 1246 ? ? 1.85 5 1 NH2 D ARG 8 ? B O D HOH 2017 ? ? 1.89 6 1 NE2 A HIS 202 ? ? C4 A DTT 1245 ? ? 1.99 7 1 OE1 A GLN 244 ? ? O A HOH 2060 ? ? 2.10 8 1 CE1 C HIS 202 ? ? S4 C DTU 1246 ? ? 2.11 9 1 O D HOH 2015 ? ? O D HOH 2017 ? ? 2.12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 199 ? ? 75.89 173.29 2 1 GLU A 220 ? ? 78.22 -46.61 3 1 ASP C 192 ? ? 96.05 81.92 4 1 CYS C 199 ? ? 76.80 175.12 5 1 GLU C 220 ? ? 73.52 -55.27 6 1 ARG D 8 ? A -176.18 -100.90 7 1 ARG D 8 ? B 166.60 -147.68 8 1 LYS D 9 ? ? -26.50 82.59 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 243 ? ? GLN A 244 ? ? -143.34 2 1 VAL C 191 ? ? ASP C 192 ? ? 136.40 3 1 ALA D 7 ? ? ARG D 8 ? A 137.64 4 1 ALA D 7 ? ? ARG D 8 ? B 133.57 5 1 ARG D 8 ? B LYS D 9 ? ? -147.84 6 1 LYS D 9 ? ? SER D 10 ? ? -119.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 234 ? CG ? A ARG 48 CG 2 1 Y 1 A ARG 234 ? CD ? A ARG 48 CD 3 1 Y 1 A ARG 234 ? NE ? A ARG 48 NE 4 1 Y 1 A ARG 234 ? CZ ? A ARG 48 CZ 5 1 Y 1 A ARG 234 ? NH1 ? A ARG 48 NH1 6 1 Y 1 A ARG 234 ? NH2 ? A ARG 48 NH2 7 1 Y 1 A PRO 240 ? CB ? A PRO 54 CB 8 1 Y 1 A PRO 240 ? CG ? A PRO 54 CG 9 1 Y 1 A PRO 240 ? CD ? A PRO 54 CD 10 1 Y 1 C VAL 191 ? CG1 ? C VAL 5 CG1 11 1 Y 1 C VAL 191 ? CG2 ? C VAL 5 CG2 12 1 Y 1 C ARG 234 ? CG ? C ARG 48 CG 13 1 Y 1 C ARG 234 ? CD ? C ARG 48 CD 14 1 Y 1 C ARG 234 ? NE ? C ARG 48 NE 15 1 Y 1 C ARG 234 ? CZ ? C ARG 48 CZ 16 1 Y 1 C ARG 234 ? NH1 ? C ARG 48 NH1 17 1 Y 1 C ARG 234 ? NH2 ? C ARG 48 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 187 ? A MET 1 2 1 Y 1 A ASP 188 ? A ASP 2 3 1 Y 1 A MET 189 ? A MET 3 4 1 Y 1 A PRO 190 ? A PRO 4 5 1 Y 1 A VAL 191 ? A VAL 5 6 1 Y 1 A ASP 192 ? A ASP 6 7 1 Y 1 A PRO 193 ? A PRO 7 8 1 Y 1 A ASN 194 ? A ASN 8 9 1 Y 1 A GLU 245 ? A GLU 59 10 1 Y 1 A ARG 246 ? A ARG 60 11 1 Y 1 B ALA 7 ? B ALA 7 12 1 Y 1 B ARG 8 ? B ARG 8 13 1 Y 1 B LYS 9 ? B LYS 9 14 1 Y 1 B SER 10 ? B SER 10 15 1 Y 1 C MET 187 ? C MET 1 16 1 Y 1 C ASP 188 ? C ASP 2 17 1 Y 1 C MET 189 ? C MET 3 18 1 Y 1 C PRO 190 ? C PRO 4 19 1 Y 1 C GLU 245 ? C GLU 59 20 1 Y 1 C ARG 246 ? C ARG 60 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DTT S1 S N N 88 DTT C1 C N N 89 DTT C2 C N R 90 DTT O2 O N N 91 DTT C3 C N R 92 DTT O3 O N N 93 DTT C4 C N N 94 DTT S4 S N N 95 DTT HS1 H N N 96 DTT H11 H N N 97 DTT H12 H N N 98 DTT H2 H N N 99 DTT HO2 H N N 100 DTT H3 H N N 101 DTT HO3 H N N 102 DTT H41 H N N 103 DTT H42 H N N 104 DTT HS2 H N N 105 DTU S1 S N N 106 DTU C1 C N N 107 DTU C2 C N S 108 DTU O2 O N N 109 DTU C3 C N R 110 DTU O3 O N N 111 DTU C4 C N N 112 DTU S4 S N N 113 DTU H1 H N N 114 DTU H1C1 H N N 115 DTU H1C2 H N N 116 DTU H2 H N N 117 DTU HA H N N 118 DTU H3 H N N 119 DTU HB H N N 120 DTU H4C1 H N N 121 DTU H4C2 H N N 122 DTU H4 H N N 123 GLN N N N N 124 GLN CA C N S 125 GLN C C N N 126 GLN O O N N 127 GLN CB C N N 128 GLN CG C N N 129 GLN CD C N N 130 GLN OE1 O N N 131 GLN NE2 N N N 132 GLN OXT O N N 133 GLN H H N N 134 GLN H2 H N N 135 GLN HA H N N 136 GLN HB2 H N N 137 GLN HB3 H N N 138 GLN HG2 H N N 139 GLN HG3 H N N 140 GLN HE21 H N N 141 GLN HE22 H N N 142 GLN HXT H N N 143 GLU N N N N 144 GLU CA C N S 145 GLU C C N N 146 GLU O O N N 147 GLU CB C N N 148 GLU CG C N N 149 GLU CD C N N 150 GLU OE1 O N N 151 GLU OE2 O N N 152 GLU OXT O N N 153 GLU H H N N 154 GLU H2 H N N 155 GLU HA H N N 156 GLU HB2 H N N 157 GLU HB3 H N N 158 GLU HG2 H N N 159 GLU HG3 H N N 160 GLU HE2 H N N 161 GLU HXT H N N 162 GLY N N N N 163 GLY CA C N N 164 GLY C C N N 165 GLY O O N N 166 GLY OXT O N N 167 GLY H H N N 168 GLY H2 H N N 169 GLY HA2 H N N 170 GLY HA3 H N N 171 GLY HXT H N N 172 HIS N N N N 173 HIS CA C N S 174 HIS C C N N 175 HIS O O N N 176 HIS CB C N N 177 HIS CG C Y N 178 HIS ND1 N Y N 179 HIS CD2 C Y N 180 HIS CE1 C Y N 181 HIS NE2 N Y N 182 HIS OXT O N N 183 HIS H H N N 184 HIS H2 H N N 185 HIS HA H N N 186 HIS HB2 H N N 187 HIS HB3 H N N 188 HIS HD1 H N N 189 HIS HD2 H N N 190 HIS HE1 H N N 191 HIS HE2 H N N 192 HIS HXT H N N 193 HOH O O N N 194 HOH H1 H N N 195 HOH H2 H N N 196 ILE N N N N 197 ILE CA C N S 198 ILE C C N N 199 ILE O O N N 200 ILE CB C N S 201 ILE CG1 C N N 202 ILE CG2 C N N 203 ILE CD1 C N N 204 ILE OXT O N N 205 ILE H H N N 206 ILE H2 H N N 207 ILE HA H N N 208 ILE HB H N N 209 ILE HG12 H N N 210 ILE HG13 H N N 211 ILE HG21 H N N 212 ILE HG22 H N N 213 ILE HG23 H N N 214 ILE HD11 H N N 215 ILE HD12 H N N 216 ILE HD13 H N N 217 ILE HXT H N N 218 LEU N N N N 219 LEU CA C N S 220 LEU C C N N 221 LEU O O N N 222 LEU CB C N N 223 LEU CG C N N 224 LEU CD1 C N N 225 LEU CD2 C N N 226 LEU OXT O N N 227 LEU H H N N 228 LEU H2 H N N 229 LEU HA H N N 230 LEU HB2 H N N 231 LEU HB3 H N N 232 LEU HG H N N 233 LEU HD11 H N N 234 LEU HD12 H N N 235 LEU HD13 H N N 236 LEU HD21 H N N 237 LEU HD22 H N N 238 LEU HD23 H N N 239 LEU HXT H N N 240 LYS N N N N 241 LYS CA C N S 242 LYS C C N N 243 LYS O O N N 244 LYS CB C N N 245 LYS CG C N N 246 LYS CD C N N 247 LYS CE C N N 248 LYS NZ N N N 249 LYS OXT O N N 250 LYS H H N N 251 LYS H2 H N N 252 LYS HA H N N 253 LYS HB2 H N N 254 LYS HB3 H N N 255 LYS HG2 H N N 256 LYS HG3 H N N 257 LYS HD2 H N N 258 LYS HD3 H N N 259 LYS HE2 H N N 260 LYS HE3 H N N 261 LYS HZ1 H N N 262 LYS HZ2 H N N 263 LYS HZ3 H N N 264 LYS HXT H N N 265 M3L N N N N 266 M3L CA C N S 267 M3L CB C N N 268 M3L CG C N N 269 M3L CD C N N 270 M3L CE C N N 271 M3L NZ N N N 272 M3L C C N N 273 M3L O O N N 274 M3L OXT O N N 275 M3L CM1 C N N 276 M3L CM2 C N N 277 M3L CM3 C N N 278 M3L H H N N 279 M3L H2 H N N 280 M3L HA H N N 281 M3L HB2 H N N 282 M3L HB3 H N N 283 M3L HG2 H N N 284 M3L HG3 H N N 285 M3L HD2 H N N 286 M3L HD3 H N N 287 M3L HE2 H N N 288 M3L HE3 H N N 289 M3L HXT H N N 290 M3L HM11 H N N 291 M3L HM12 H N N 292 M3L HM13 H N N 293 M3L HM21 H N N 294 M3L HM22 H N N 295 M3L HM23 H N N 296 M3L HM31 H N N 297 M3L HM32 H N N 298 M3L HM33 H N N 299 MET N N N N 300 MET CA C N S 301 MET C C N N 302 MET O O N N 303 MET CB C N N 304 MET CG C N N 305 MET SD S N N 306 MET CE C N N 307 MET OXT O N N 308 MET H H N N 309 MET H2 H N N 310 MET HA H N N 311 MET HB2 H N N 312 MET HB3 H N N 313 MET HG2 H N N 314 MET HG3 H N N 315 MET HE1 H N N 316 MET HE2 H N N 317 MET HE3 H N N 318 MET HXT H N N 319 NA NA NA N N 320 PHE N N N N 321 PHE CA C N S 322 PHE C C N N 323 PHE O O N N 324 PHE CB C N N 325 PHE CG C Y N 326 PHE CD1 C Y N 327 PHE CD2 C Y N 328 PHE CE1 C Y N 329 PHE CE2 C Y N 330 PHE CZ C Y N 331 PHE OXT O N N 332 PHE H H N N 333 PHE H2 H N N 334 PHE HA H N N 335 PHE HB2 H N N 336 PHE HB3 H N N 337 PHE HD1 H N N 338 PHE HD2 H N N 339 PHE HE1 H N N 340 PHE HE2 H N N 341 PHE HZ H N N 342 PHE HXT H N N 343 PRO N N N N 344 PRO CA C N S 345 PRO C C N N 346 PRO O O N N 347 PRO CB C N N 348 PRO CG C N N 349 PRO CD C N N 350 PRO OXT O N N 351 PRO H H N N 352 PRO HA H N N 353 PRO HB2 H N N 354 PRO HB3 H N N 355 PRO HG2 H N N 356 PRO HG3 H N N 357 PRO HD2 H N N 358 PRO HD3 H N N 359 PRO HXT H N N 360 SER N N N N 361 SER CA C N S 362 SER C C N N 363 SER O O N N 364 SER CB C N N 365 SER OG O N N 366 SER OXT O N N 367 SER H H N N 368 SER H2 H N N 369 SER HA H N N 370 SER HB2 H N N 371 SER HB3 H N N 372 SER HG H N N 373 SER HXT H N N 374 THR N N N N 375 THR CA C N S 376 THR C C N N 377 THR O O N N 378 THR CB C N R 379 THR OG1 O N N 380 THR CG2 C N N 381 THR OXT O N N 382 THR H H N N 383 THR H2 H N N 384 THR HA H N N 385 THR HB H N N 386 THR HG1 H N N 387 THR HG21 H N N 388 THR HG22 H N N 389 THR HG23 H N N 390 THR HXT H N N 391 TRP N N N N 392 TRP CA C N S 393 TRP C C N N 394 TRP O O N N 395 TRP CB C N N 396 TRP CG C Y N 397 TRP CD1 C Y N 398 TRP CD2 C Y N 399 TRP NE1 N Y N 400 TRP CE2 C Y N 401 TRP CE3 C Y N 402 TRP CZ2 C Y N 403 TRP CZ3 C Y N 404 TRP CH2 C Y N 405 TRP OXT O N N 406 TRP H H N N 407 TRP H2 H N N 408 TRP HA H N N 409 TRP HB2 H N N 410 TRP HB3 H N N 411 TRP HD1 H N N 412 TRP HE1 H N N 413 TRP HE3 H N N 414 TRP HZ2 H N N 415 TRP HZ3 H N N 416 TRP HH2 H N N 417 TRP HXT H N N 418 TYR N N N N 419 TYR CA C N S 420 TYR C C N N 421 TYR O O N N 422 TYR CB C N N 423 TYR CG C Y N 424 TYR CD1 C Y N 425 TYR CD2 C Y N 426 TYR CE1 C Y N 427 TYR CE2 C Y N 428 TYR CZ C Y N 429 TYR OH O N N 430 TYR OXT O N N 431 TYR H H N N 432 TYR H2 H N N 433 TYR HA H N N 434 TYR HB2 H N N 435 TYR HB3 H N N 436 TYR HD1 H N N 437 TYR HD2 H N N 438 TYR HE1 H N N 439 TYR HE2 H N N 440 TYR HH H N N 441 TYR HXT H N N 442 VAL N N N N 443 VAL CA C N S 444 VAL C C N N 445 VAL O O N N 446 VAL CB C N N 447 VAL CG1 C N N 448 VAL CG2 C N N 449 VAL OXT O N N 450 VAL H H N N 451 VAL H2 H N N 452 VAL HA H N N 453 VAL HB H N N 454 VAL HG11 H N N 455 VAL HG12 H N N 456 VAL HG13 H N N 457 VAL HG21 H N N 458 VAL HG22 H N N 459 VAL HG23 H N N 460 VAL HXT H N N 461 ZN ZN ZN N N 462 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DTT S1 C1 sing N N 83 DTT S1 HS1 sing N N 84 DTT C1 C2 sing N N 85 DTT C1 H11 sing N N 86 DTT C1 H12 sing N N 87 DTT C2 O2 sing N N 88 DTT C2 C3 sing N N 89 DTT C2 H2 sing N N 90 DTT O2 HO2 sing N N 91 DTT C3 O3 sing N N 92 DTT C3 C4 sing N N 93 DTT C3 H3 sing N N 94 DTT O3 HO3 sing N N 95 DTT C4 S4 sing N N 96 DTT C4 H41 sing N N 97 DTT C4 H42 sing N N 98 DTT S4 HS2 sing N N 99 DTU S1 C1 sing N N 100 DTU S1 H1 sing N N 101 DTU C1 C2 sing N N 102 DTU C1 H1C1 sing N N 103 DTU C1 H1C2 sing N N 104 DTU C2 O2 sing N N 105 DTU C2 C3 sing N N 106 DTU C2 H2 sing N N 107 DTU O2 HA sing N N 108 DTU C3 O3 sing N N 109 DTU C3 C4 sing N N 110 DTU C3 H3 sing N N 111 DTU O3 HB sing N N 112 DTU C4 S4 sing N N 113 DTU C4 H4C1 sing N N 114 DTU C4 H4C2 sing N N 115 DTU S4 H4 sing N N 116 GLN N CA sing N N 117 GLN N H sing N N 118 GLN N H2 sing N N 119 GLN CA C sing N N 120 GLN CA CB sing N N 121 GLN CA HA sing N N 122 GLN C O doub N N 123 GLN C OXT sing N N 124 GLN CB CG sing N N 125 GLN CB HB2 sing N N 126 GLN CB HB3 sing N N 127 GLN CG CD sing N N 128 GLN CG HG2 sing N N 129 GLN CG HG3 sing N N 130 GLN CD OE1 doub N N 131 GLN CD NE2 sing N N 132 GLN NE2 HE21 sing N N 133 GLN NE2 HE22 sing N N 134 GLN OXT HXT sing N N 135 GLU N CA sing N N 136 GLU N H sing N N 137 GLU N H2 sing N N 138 GLU CA C sing N N 139 GLU CA CB sing N N 140 GLU CA HA sing N N 141 GLU C O doub N N 142 GLU C OXT sing N N 143 GLU CB CG sing N N 144 GLU CB HB2 sing N N 145 GLU CB HB3 sing N N 146 GLU CG CD sing N N 147 GLU CG HG2 sing N N 148 GLU CG HG3 sing N N 149 GLU CD OE1 doub N N 150 GLU CD OE2 sing N N 151 GLU OE2 HE2 sing N N 152 GLU OXT HXT sing N N 153 GLY N CA sing N N 154 GLY N H sing N N 155 GLY N H2 sing N N 156 GLY CA C sing N N 157 GLY CA HA2 sing N N 158 GLY CA HA3 sing N N 159 GLY C O doub N N 160 GLY C OXT sing N N 161 GLY OXT HXT sing N N 162 HIS N CA sing N N 163 HIS N H sing N N 164 HIS N H2 sing N N 165 HIS CA C sing N N 166 HIS CA CB sing N N 167 HIS CA HA sing N N 168 HIS C O doub N N 169 HIS C OXT sing N N 170 HIS CB CG sing N N 171 HIS CB HB2 sing N N 172 HIS CB HB3 sing N N 173 HIS CG ND1 sing Y N 174 HIS CG CD2 doub Y N 175 HIS ND1 CE1 doub Y N 176 HIS ND1 HD1 sing N N 177 HIS CD2 NE2 sing Y N 178 HIS CD2 HD2 sing N N 179 HIS CE1 NE2 sing Y N 180 HIS CE1 HE1 sing N N 181 HIS NE2 HE2 sing N N 182 HIS OXT HXT sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 ILE N CA sing N N 186 ILE N H sing N N 187 ILE N H2 sing N N 188 ILE CA C sing N N 189 ILE CA CB sing N N 190 ILE CA HA sing N N 191 ILE C O doub N N 192 ILE C OXT sing N N 193 ILE CB CG1 sing N N 194 ILE CB CG2 sing N N 195 ILE CB HB sing N N 196 ILE CG1 CD1 sing N N 197 ILE CG1 HG12 sing N N 198 ILE CG1 HG13 sing N N 199 ILE CG2 HG21 sing N N 200 ILE CG2 HG22 sing N N 201 ILE CG2 HG23 sing N N 202 ILE CD1 HD11 sing N N 203 ILE CD1 HD12 sing N N 204 ILE CD1 HD13 sing N N 205 ILE OXT HXT sing N N 206 LEU N CA sing N N 207 LEU N H sing N N 208 LEU N H2 sing N N 209 LEU CA C sing N N 210 LEU CA CB sing N N 211 LEU CA HA sing N N 212 LEU C O doub N N 213 LEU C OXT sing N N 214 LEU CB CG sing N N 215 LEU CB HB2 sing N N 216 LEU CB HB3 sing N N 217 LEU CG CD1 sing N N 218 LEU CG CD2 sing N N 219 LEU CG HG sing N N 220 LEU CD1 HD11 sing N N 221 LEU CD1 HD12 sing N N 222 LEU CD1 HD13 sing N N 223 LEU CD2 HD21 sing N N 224 LEU CD2 HD22 sing N N 225 LEU CD2 HD23 sing N N 226 LEU OXT HXT sing N N 227 LYS N CA sing N N 228 LYS N H sing N N 229 LYS N H2 sing N N 230 LYS CA C sing N N 231 LYS CA CB sing N N 232 LYS CA HA sing N N 233 LYS C O doub N N 234 LYS C OXT sing N N 235 LYS CB CG sing N N 236 LYS CB HB2 sing N N 237 LYS CB HB3 sing N N 238 LYS CG CD sing N N 239 LYS CG HG2 sing N N 240 LYS CG HG3 sing N N 241 LYS CD CE sing N N 242 LYS CD HD2 sing N N 243 LYS CD HD3 sing N N 244 LYS CE NZ sing N N 245 LYS CE HE2 sing N N 246 LYS CE HE3 sing N N 247 LYS NZ HZ1 sing N N 248 LYS NZ HZ2 sing N N 249 LYS NZ HZ3 sing N N 250 LYS OXT HXT sing N N 251 M3L N CA sing N N 252 M3L N H sing N N 253 M3L N H2 sing N N 254 M3L CA CB sing N N 255 M3L CA C sing N N 256 M3L CA HA sing N N 257 M3L CB CG sing N N 258 M3L CB HB2 sing N N 259 M3L CB HB3 sing N N 260 M3L CG CD sing N N 261 M3L CG HG2 sing N N 262 M3L CG HG3 sing N N 263 M3L CD CE sing N N 264 M3L CD HD2 sing N N 265 M3L CD HD3 sing N N 266 M3L CE NZ sing N N 267 M3L CE HE2 sing N N 268 M3L CE HE3 sing N N 269 M3L NZ CM1 sing N N 270 M3L NZ CM2 sing N N 271 M3L NZ CM3 sing N N 272 M3L C O doub N N 273 M3L C OXT sing N N 274 M3L OXT HXT sing N N 275 M3L CM1 HM11 sing N N 276 M3L CM1 HM12 sing N N 277 M3L CM1 HM13 sing N N 278 M3L CM2 HM21 sing N N 279 M3L CM2 HM22 sing N N 280 M3L CM2 HM23 sing N N 281 M3L CM3 HM31 sing N N 282 M3L CM3 HM32 sing N N 283 M3L CM3 HM33 sing N N 284 MET N CA sing N N 285 MET N H sing N N 286 MET N H2 sing N N 287 MET CA C sing N N 288 MET CA CB sing N N 289 MET CA HA sing N N 290 MET C O doub N N 291 MET C OXT sing N N 292 MET CB CG sing N N 293 MET CB HB2 sing N N 294 MET CB HB3 sing N N 295 MET CG SD sing N N 296 MET CG HG2 sing N N 297 MET CG HG3 sing N N 298 MET SD CE sing N N 299 MET CE HE1 sing N N 300 MET CE HE2 sing N N 301 MET CE HE3 sing N N 302 MET OXT HXT sing N N 303 PHE N CA sing N N 304 PHE N H sing N N 305 PHE N H2 sing N N 306 PHE CA C sing N N 307 PHE CA CB sing N N 308 PHE CA HA sing N N 309 PHE C O doub N N 310 PHE C OXT sing N N 311 PHE CB CG sing N N 312 PHE CB HB2 sing N N 313 PHE CB HB3 sing N N 314 PHE CG CD1 doub Y N 315 PHE CG CD2 sing Y N 316 PHE CD1 CE1 sing Y N 317 PHE CD1 HD1 sing N N 318 PHE CD2 CE2 doub Y N 319 PHE CD2 HD2 sing N N 320 PHE CE1 CZ doub Y N 321 PHE CE1 HE1 sing N N 322 PHE CE2 CZ sing Y N 323 PHE CE2 HE2 sing N N 324 PHE CZ HZ sing N N 325 PHE OXT HXT sing N N 326 PRO N CA sing N N 327 PRO N CD sing N N 328 PRO N H sing N N 329 PRO CA C sing N N 330 PRO CA CB sing N N 331 PRO CA HA sing N N 332 PRO C O doub N N 333 PRO C OXT sing N N 334 PRO CB CG sing N N 335 PRO CB HB2 sing N N 336 PRO CB HB3 sing N N 337 PRO CG CD sing N N 338 PRO CG HG2 sing N N 339 PRO CG HG3 sing N N 340 PRO CD HD2 sing N N 341 PRO CD HD3 sing N N 342 PRO OXT HXT sing N N 343 SER N CA sing N N 344 SER N H sing N N 345 SER N H2 sing N N 346 SER CA C sing N N 347 SER CA CB sing N N 348 SER CA HA sing N N 349 SER C O doub N N 350 SER C OXT sing N N 351 SER CB OG sing N N 352 SER CB HB2 sing N N 353 SER CB HB3 sing N N 354 SER OG HG sing N N 355 SER OXT HXT sing N N 356 THR N CA sing N N 357 THR N H sing N N 358 THR N H2 sing N N 359 THR CA C sing N N 360 THR CA CB sing N N 361 THR CA HA sing N N 362 THR C O doub N N 363 THR C OXT sing N N 364 THR CB OG1 sing N N 365 THR CB CG2 sing N N 366 THR CB HB sing N N 367 THR OG1 HG1 sing N N 368 THR CG2 HG21 sing N N 369 THR CG2 HG22 sing N N 370 THR CG2 HG23 sing N N 371 THR OXT HXT sing N N 372 TRP N CA sing N N 373 TRP N H sing N N 374 TRP N H2 sing N N 375 TRP CA C sing N N 376 TRP CA CB sing N N 377 TRP CA HA sing N N 378 TRP C O doub N N 379 TRP C OXT sing N N 380 TRP CB CG sing N N 381 TRP CB HB2 sing N N 382 TRP CB HB3 sing N N 383 TRP CG CD1 doub Y N 384 TRP CG CD2 sing Y N 385 TRP CD1 NE1 sing Y N 386 TRP CD1 HD1 sing N N 387 TRP CD2 CE2 doub Y N 388 TRP CD2 CE3 sing Y N 389 TRP NE1 CE2 sing Y N 390 TRP NE1 HE1 sing N N 391 TRP CE2 CZ2 sing Y N 392 TRP CE3 CZ3 doub Y N 393 TRP CE3 HE3 sing N N 394 TRP CZ2 CH2 doub Y N 395 TRP CZ2 HZ2 sing N N 396 TRP CZ3 CH2 sing Y N 397 TRP CZ3 HZ3 sing N N 398 TRP CH2 HH2 sing N N 399 TRP OXT HXT sing N N 400 TYR N CA sing N N 401 TYR N H sing N N 402 TYR N H2 sing N N 403 TYR CA C sing N N 404 TYR CA CB sing N N 405 TYR CA HA sing N N 406 TYR C O doub N N 407 TYR C OXT sing N N 408 TYR CB CG sing N N 409 TYR CB HB2 sing N N 410 TYR CB HB3 sing N N 411 TYR CG CD1 doub Y N 412 TYR CG CD2 sing Y N 413 TYR CD1 CE1 sing Y N 414 TYR CD1 HD1 sing N N 415 TYR CD2 CE2 doub Y N 416 TYR CD2 HD2 sing N N 417 TYR CE1 CZ doub Y N 418 TYR CE1 HE1 sing N N 419 TYR CE2 CZ sing Y N 420 TYR CE2 HE2 sing N N 421 TYR CZ OH sing N N 422 TYR OH HH sing N N 423 TYR OXT HXT sing N N 424 VAL N CA sing N N 425 VAL N H sing N N 426 VAL N H2 sing N N 427 VAL CA C sing N N 428 VAL CA CB sing N N 429 VAL CA HA sing N N 430 VAL C O doub N N 431 VAL C OXT sing N N 432 VAL CB CG1 sing N N 433 VAL CB CG2 sing N N 434 VAL CB HB sing N N 435 VAL CG1 HG11 sing N N 436 VAL CG1 HG12 sing N N 437 VAL CG1 HG13 sing N N 438 VAL CG2 HG21 sing N N 439 VAL CG2 HG22 sing N N 440 VAL CG2 HG23 sing N N 441 VAL OXT HXT sing N N 442 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 2,3-DIHYDROXY-1,4-DITHIOBUTANE DTT 5 'ZINC ION' ZN 6 '(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL' DTU 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2G6Q _pdbx_initial_refinement_model.details 'PDB ENTRY 2G6Q' #