data_2VPE # _entry.id 2VPE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VPE pdb_00002vpe 10.2210/pdb2vpe/pdb PDBE EBI-35476 ? ? WWPDB D_1290035476 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2VP7 unspecified 'DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX' PDB 2VPB unspecified 'DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX' PDB 2VPD unspecified 'DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX' PDB 2VPG unspecified 'DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VPE _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-02-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fiedler, M.' 1 'Sanchez-Barrena, M.J.' 2 'Nekrasov, M.' 3 'Mieszczanek, J.' 4 'Rybin, V.' 5 'Muller, J.' 6 'Evans, P.' 7 'Bienz, M.' 8 # _citation.id primary _citation.title 'Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 30 _citation.page_first 507 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18498752 _citation.pdbx_database_id_DOI 10.1016/J.MOLCEL.2008.03.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fiedler, M.' 1 ? primary 'Sanchez-Barrena, M.J.' 2 ? primary 'Nekrasov, M.' 3 ? primary 'Mieszczanek, J.' 4 ? primary 'Rybin, V.' 5 ? primary 'Muller, J.' 6 ? primary 'Evans, P.' 7 ? primary 'Bienz, M.' 8 ? # _cell.entry_id 2VPE _cell.length_a 105.720 _cell.length_b 105.720 _cell.length_c 51.430 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VPE _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PYGOPUS HOMOLOG 1' 6759.612 2 ? ? 'PHD DOMAIN, RESIDUES 340-398' ? 2 polymer man 'B-CELL CLL/LYMPHOMA 9 PROTEIN' 3444.991 2 ? ? 'HD1 DOMAIN, RESIDUES 177-205' ? 3 polymer syn 'HISTONE H3 TAIL' 803.927 2 ? ? ? '9-MER H3K4ME2, DIMETHYLATION AT LYS K4' 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 6 water nat water 18.015 205 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 HPYGO1 2 'B-CELL LYMPHOMA 9 PROTEIN, BCL-9, PROTEIN LEGLESS HOMOLOG, BCL9' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GAMAVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD GAMAVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD A,C ? 2 'polypeptide(L)' no no GAMVYVFSTEMANKAAEAVLKGQVETIVSFHI GAMVYVFSTEMANKAAEAVLKGQVETIVSFHI B,D ? 3 'polypeptide(L)' no yes 'ART(MLY)QTA' ARTKQTA P,R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 VAL n 1 6 TYR n 1 7 PRO n 1 8 CYS n 1 9 GLY n 1 10 ILE n 1 11 CYS n 1 12 THR n 1 13 ASN n 1 14 GLU n 1 15 VAL n 1 16 ASN n 1 17 ASP n 1 18 ASP n 1 19 GLN n 1 20 ASP n 1 21 ALA n 1 22 ILE n 1 23 LEU n 1 24 CYS n 1 25 GLU n 1 26 ALA n 1 27 SER n 1 28 CYS n 1 29 GLN n 1 30 LYS n 1 31 TRP n 1 32 PHE n 1 33 HIS n 1 34 ARG n 1 35 ILE n 1 36 CYS n 1 37 THR n 1 38 GLY n 1 39 MET n 1 40 THR n 1 41 GLU n 1 42 THR n 1 43 ALA n 1 44 TYR n 1 45 GLY n 1 46 LEU n 1 47 LEU n 1 48 THR n 1 49 ALA n 1 50 GLU n 1 51 ALA n 1 52 SER n 1 53 ALA n 1 54 VAL n 1 55 TRP n 1 56 GLY n 1 57 CYS n 1 58 ASP n 1 59 THR n 1 60 CYS n 1 61 MET n 1 62 ALA n 1 63 ASP n 2 1 GLY n 2 2 ALA n 2 3 MET n 2 4 VAL n 2 5 TYR n 2 6 VAL n 2 7 PHE n 2 8 SER n 2 9 THR n 2 10 GLU n 2 11 MET n 2 12 ALA n 2 13 ASN n 2 14 LYS n 2 15 ALA n 2 16 ALA n 2 17 GLU n 2 18 ALA n 2 19 VAL n 2 20 LEU n 2 21 LYS n 2 22 GLY n 2 23 GLN n 2 24 VAL n 2 25 GLU n 2 26 THR n 2 27 ILE n 2 28 VAL n 2 29 SER n 2 30 PHE n 2 31 HIS n 2 32 ILE n 3 1 ALA n 3 2 ARG n 3 3 THR n 3 4 MLY n 3 5 GLN n 3 6 THR n 3 7 ALA n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 511693 ? ? ? ? ? ? BL21 'CODONPLUS(DE3)-RIL' ? ? ? ? ? ? ? 'BI-CISTRONIC EXPRESSION VECTOR' ? ? ? ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 511693 ? ? ? ? ? ? BL21 'CODONPLUS(DE3)-RIL' ? ? ? ? ? ? ? 'BI-CISTRONIC EXPRESSION VECTOR' ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VPE 1 ? ? 2VPE ? 2 UNP PYGO1_HUMAN 1 ? ? Q9Y3Y4 ? 3 PDB 2VPE 2 ? ? 2VPE ? 4 UNP BCL9_HUMAN 2 ? ? O00512 ? 5 PDB 2VPE 3 ? ? 2VPE ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VPE A 1 ? 4 ? 2VPE 336 ? 339 ? 336 339 2 2 2VPE A 5 ? 63 ? Q9Y3Y4 340 ? 398 ? 340 398 3 3 2VPE B 1 ? 3 ? 2VPE 174 ? 176 ? 174 176 4 4 2VPE B 4 ? 32 ? O00512 177 ? 205 ? 177 205 5 1 2VPE C 1 ? 4 ? 2VPE 336 ? 339 ? 336 339 6 2 2VPE C 5 ? 63 ? Q9Y3Y4 340 ? 398 ? 340 398 7 3 2VPE D 1 ? 3 ? 2VPE 174 ? 176 ? 174 176 8 4 2VPE D 4 ? 32 ? O00512 177 ? 205 ? 177 205 9 5 2VPE P 1 ? 7 ? 2VPE 1 ? 7 ? 1 7 10 5 2VPE R 1 ? 7 ? 2VPE 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2VPE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_percent_sol 60.31 _exptl_crystal.description 'CRYSTALLOGRAPHIC DATA WERE COLLECTED AT DIAMOND SYNCHROTRON, OXFORD, UK' _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'HANGING-DROP VAPOUR-DIFFUSION METHOD AT 19 CELSIUS. 26.4% PEG-3350, 200MM LISO4, 100MM TRIS PH7' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-09-21 _diffrn_detector.details 'KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (111) DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.06 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 1.06 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VPE _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.37 _reflns.d_resolution_high 1.70 _reflns.number_obs 30994 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.21 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 10.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VPE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 30994 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 106.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.230 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1655 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 28.81 _refine.aniso_B[1][1] 0.64000 _refine.aniso_B[2][2] 0.64000 _refine.aniso_B[3][3] -1.29000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2VPB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.088 _refine.pdbx_overall_ESU_R_Free 0.093 _refine.overall_SU_ML 0.065 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.965 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1454 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 205 _refine_hist.number_atoms_total 1669 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 106.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1496 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.197 1.938 ? 2024 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.669 5.000 ? 194 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.458 25.424 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.476 15.000 ? 236 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.174 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 240 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1092 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.199 0.200 ? 727 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.200 ? 1046 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.125 0.200 ? 139 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.167 0.200 ? 85 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.116 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.921 1.500 ? 994 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.567 2.000 ? 1553 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.252 3.000 ? 573 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.642 4.500 ? 471 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.74 _refine_ls_shell.number_reflns_R_work 2241 _refine_ls_shell.R_factor_R_work 0.2950 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3810 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 110 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VPE _struct.title 'Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VPE _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text ;GENE REGULATION, WNT SIGNALING PATHWAY, WNT SIGNALING COMPLEX, CHROMOSOMAL REARRANGEMENT, SIGNALING PROTEIN, BCL9 HD1 DOMAIN, HPYGO1 PHD DOMAIN, PROTO-ONCOGENE, PHOSPHOPROTEIN, HISTONE H3K4ME2, ZINC, NUCLEUS, ZINC-FINGER, METAL-BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? P N N 6 ? Q N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 34 ? GLY A 38 ? ARG A 369 GLY A 373 1 ? 5 HELX_P HELX_P2 2 THR A 40 ? GLU A 50 ? THR A 375 GLU A 385 1 ? 11 HELX_P HELX_P3 3 CYS A 57 ? ASP A 63 ? CYS A 392 ASP A 398 1 ? 7 HELX_P HELX_P4 4 SER B 8 ? LYS B 21 ? SER B 181 LYS B 194 1 ? 14 HELX_P HELX_P5 5 ARG C 34 ? GLY C 38 ? ARG C 369 GLY C 373 1 ? 5 HELX_P HELX_P6 6 THR C 40 ? GLU C 50 ? THR C 375 GLU C 385 1 ? 11 HELX_P HELX_P7 7 CYS C 57 ? ALA C 62 ? CYS C 392 ALA C 397 1 ? 6 HELX_P HELX_P8 8 SER D 8 ? LYS D 21 ? SER D 181 LYS D 194 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? E THR 3 C ? ? ? 1_555 E MLY 4 N ? ? P THR 3 P MLY 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? E MLY 4 C ? ? ? 1_555 E GLN 5 N ? ? P MLY 4 P GLN 5 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? F THR 3 C ? ? ? 1_555 F MLY 4 N ? ? R THR 3 R MLY 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? F MLY 4 C ? ? ? 1_555 F GLN 5 N ? ? R MLY 4 R GLN 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? metalc1 metalc ? ? A CYS 8 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 343 A ZN 1400 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc2 metalc ? ? A CYS 11 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 346 A ZN 1400 1_555 ? ? ? ? ? ? ? 2.386 ? ? metalc3 metalc ? ? A CYS 24 SG ? ? ? 1_555 I ZN . ZN ? ? A CYS 359 A ZN 1401 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc4 metalc ? ? A CYS 28 SG ? ? ? 1_555 I ZN . ZN ? ? A CYS 363 A ZN 1401 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc5 metalc ? ? A HIS 33 ND1 ? ? ? 1_555 H ZN . ZN ? ? A HIS 368 A ZN 1400 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc6 metalc ? ? A CYS 36 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 371 A ZN 1400 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc7 metalc ? ? A CYS 57 SG ? ? ? 1_555 I ZN . ZN ? ? A CYS 392 A ZN 1401 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc8 metalc ? ? A CYS 60 SG ? ? ? 1_555 I ZN . ZN ? ? A CYS 395 A ZN 1401 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc9 metalc ? ? C CYS 8 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 343 C ZN 1398 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc10 metalc ? ? C CYS 11 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 346 C ZN 1398 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc11 metalc ? ? C CYS 24 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 359 C ZN 1399 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc12 metalc ? ? C CYS 28 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 363 C ZN 1399 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc13 metalc ? ? C HIS 33 ND1 ? ? ? 1_555 J ZN . ZN ? ? C HIS 368 C ZN 1398 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc14 metalc ? ? C CYS 36 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 371 C ZN 1398 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc15 metalc ? ? C CYS 57 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 392 C ZN 1399 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc16 metalc ? ? C CYS 60 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 395 C ZN 1399 1_555 ? ? ? ? ? ? ? 2.371 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? CA ? 2 ? CB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? parallel CA 1 2 ? anti-parallel CB 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 21 ? LEU A 23 ? ALA A 356 LEU A 358 AA 2 TRP A 31 ? HIS A 33 ? TRP A 366 HIS A 368 AB 1 ALA A 53 ? TRP A 55 ? ALA A 388 TRP A 390 AB 2 TYR B 5 ? PHE B 7 ? TYR B 178 PHE B 180 CA 1 ALA C 21 ? LEU C 23 ? ALA C 356 LEU C 358 CA 2 TRP C 31 ? HIS C 33 ? TRP C 366 HIS C 368 CB 1 ALA C 53 ? TRP C 55 ? ALA C 388 TRP C 390 CB 2 TYR D 5 ? PHE D 7 ? TYR D 178 PHE D 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 22 ? N ILE A 357 O PHE A 32 ? O PHE A 367 AB 1 2 N VAL A 54 ? N VAL A 389 O TYR B 5 ? O TYR B 178 CA 1 2 N ILE C 22 ? N ILE C 357 O PHE C 32 ? O PHE C 367 CB 1 2 N VAL C 54 ? N VAL C 389 O TYR D 5 ? O TYR D 178 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL A1399' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN C1398' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN C1399' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A1400' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A1401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLN A 19 ? GLN A 354 . ? 1_555 ? 2 AC1 7 HIS A 33 ? HIS A 368 . ? 1_555 ? 3 AC1 7 HOH L . ? HOH A 2076 . ? 1_555 ? 4 AC1 7 HOH L . ? HOH A 2077 . ? 1_555 ? 5 AC1 7 HOH L . ? HOH A 2078 . ? 1_555 ? 6 AC1 7 GLY C 1 ? GLY C 336 . ? 1_555 ? 7 AC1 7 ASN C 13 ? ASN C 348 . ? 1_555 ? 8 AC2 4 CYS C 8 ? CYS C 343 . ? 1_555 ? 9 AC2 4 CYS C 11 ? CYS C 346 . ? 1_555 ? 10 AC2 4 HIS C 33 ? HIS C 368 . ? 1_555 ? 11 AC2 4 CYS C 36 ? CYS C 371 . ? 1_555 ? 12 AC3 4 CYS C 24 ? CYS C 359 . ? 1_555 ? 13 AC3 4 CYS C 28 ? CYS C 363 . ? 1_555 ? 14 AC3 4 CYS C 57 ? CYS C 392 . ? 1_555 ? 15 AC3 4 CYS C 60 ? CYS C 395 . ? 1_555 ? 16 AC4 4 CYS A 8 ? CYS A 343 . ? 1_555 ? 17 AC4 4 CYS A 11 ? CYS A 346 . ? 1_555 ? 18 AC4 4 HIS A 33 ? HIS A 368 . ? 1_555 ? 19 AC4 4 CYS A 36 ? CYS A 371 . ? 1_555 ? 20 AC5 4 CYS A 24 ? CYS A 359 . ? 1_555 ? 21 AC5 4 CYS A 28 ? CYS A 363 . ? 1_555 ? 22 AC5 4 CYS A 57 ? CYS A 392 . ? 1_555 ? 23 AC5 4 CYS A 60 ? CYS A 395 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VPE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VPE _atom_sites.fract_transf_matrix[1][1] 0.009459 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009459 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019444 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 336 ? ? ? A . n A 1 2 ALA 2 337 ? ? ? A . n A 1 3 MET 3 338 338 MET MET A . n A 1 4 ALA 4 339 339 ALA ALA A . n A 1 5 VAL 5 340 340 VAL VAL A . n A 1 6 TYR 6 341 341 TYR TYR A . n A 1 7 PRO 7 342 342 PRO PRO A . n A 1 8 CYS 8 343 343 CYS CYS A . n A 1 9 GLY 9 344 344 GLY GLY A . n A 1 10 ILE 10 345 345 ILE ILE A . n A 1 11 CYS 11 346 346 CYS CYS A . n A 1 12 THR 12 347 347 THR THR A . n A 1 13 ASN 13 348 348 ASN ASN A . n A 1 14 GLU 14 349 349 GLU GLU A . n A 1 15 VAL 15 350 350 VAL VAL A . n A 1 16 ASN 16 351 351 ASN ASN A . n A 1 17 ASP 17 352 352 ASP ASP A . n A 1 18 ASP 18 353 353 ASP ASP A . n A 1 19 GLN 19 354 354 GLN GLN A . n A 1 20 ASP 20 355 355 ASP ASP A . n A 1 21 ALA 21 356 356 ALA ALA A . n A 1 22 ILE 22 357 357 ILE ILE A . n A 1 23 LEU 23 358 358 LEU LEU A . n A 1 24 CYS 24 359 359 CYS CYS A . n A 1 25 GLU 25 360 360 GLU GLU A . n A 1 26 ALA 26 361 361 ALA ALA A . n A 1 27 SER 27 362 362 SER SER A . n A 1 28 CYS 28 363 363 CYS CYS A . n A 1 29 GLN 29 364 364 GLN GLN A . n A 1 30 LYS 30 365 365 LYS LYS A . n A 1 31 TRP 31 366 366 TRP TRP A . n A 1 32 PHE 32 367 367 PHE PHE A . n A 1 33 HIS 33 368 368 HIS HIS A . n A 1 34 ARG 34 369 369 ARG ARG A . n A 1 35 ILE 35 370 370 ILE ILE A . n A 1 36 CYS 36 371 371 CYS CYS A . n A 1 37 THR 37 372 372 THR THR A . n A 1 38 GLY 38 373 373 GLY GLY A . n A 1 39 MET 39 374 374 MET MET A . n A 1 40 THR 40 375 375 THR THR A . n A 1 41 GLU 41 376 376 GLU GLU A . n A 1 42 THR 42 377 377 THR THR A . n A 1 43 ALA 43 378 378 ALA ALA A . n A 1 44 TYR 44 379 379 TYR TYR A . n A 1 45 GLY 45 380 380 GLY GLY A . n A 1 46 LEU 46 381 381 LEU LEU A . n A 1 47 LEU 47 382 382 LEU LEU A . n A 1 48 THR 48 383 383 THR THR A . n A 1 49 ALA 49 384 384 ALA ALA A . n A 1 50 GLU 50 385 385 GLU GLU A . n A 1 51 ALA 51 386 386 ALA ALA A . n A 1 52 SER 52 387 387 SER SER A . n A 1 53 ALA 53 388 388 ALA ALA A . n A 1 54 VAL 54 389 389 VAL VAL A . n A 1 55 TRP 55 390 390 TRP TRP A . n A 1 56 GLY 56 391 391 GLY GLY A . n A 1 57 CYS 57 392 392 CYS CYS A . n A 1 58 ASP 58 393 393 ASP ASP A . n A 1 59 THR 59 394 394 THR THR A . n A 1 60 CYS 60 395 395 CYS CYS A . n A 1 61 MET 61 396 396 MET MET A . n A 1 62 ALA 62 397 397 ALA ALA A . n A 1 63 ASP 63 398 398 ASP ASP A . n B 2 1 GLY 1 174 174 GLY GLY B . n B 2 2 ALA 2 175 175 ALA ALA B . n B 2 3 MET 3 176 176 MET MET B . n B 2 4 VAL 4 177 177 VAL VAL B . n B 2 5 TYR 5 178 178 TYR TYR B . n B 2 6 VAL 6 179 179 VAL VAL B . n B 2 7 PHE 7 180 180 PHE PHE B . n B 2 8 SER 8 181 181 SER SER B . n B 2 9 THR 9 182 182 THR THR B . n B 2 10 GLU 10 183 183 GLU GLU B . n B 2 11 MET 11 184 184 MET MET B . n B 2 12 ALA 12 185 185 ALA ALA B . n B 2 13 ASN 13 186 186 ASN ASN B . n B 2 14 LYS 14 187 187 LYS LYS B . n B 2 15 ALA 15 188 188 ALA ALA B . n B 2 16 ALA 16 189 189 ALA ALA B . n B 2 17 GLU 17 190 190 GLU GLU B . n B 2 18 ALA 18 191 191 ALA ALA B . n B 2 19 VAL 19 192 192 VAL VAL B . n B 2 20 LEU 20 193 193 LEU LEU B . n B 2 21 LYS 21 194 194 LYS LYS B . n B 2 22 GLY 22 195 195 GLY GLY B . n B 2 23 GLN 23 196 196 GLN GLN B . n B 2 24 VAL 24 197 197 VAL VAL B . n B 2 25 GLU 25 198 198 GLU GLU B . n B 2 26 THR 26 199 199 THR THR B . n B 2 27 ILE 27 200 200 ILE ILE B . n B 2 28 VAL 28 201 201 VAL VAL B . n B 2 29 SER 29 202 202 SER SER B . n B 2 30 PHE 30 203 203 PHE PHE B . n B 2 31 HIS 31 204 ? ? ? B . n B 2 32 ILE 32 205 ? ? ? B . n C 1 1 GLY 1 336 336 GLY GLY C . n C 1 2 ALA 2 337 337 ALA ALA C . n C 1 3 MET 3 338 338 MET MET C . n C 1 4 ALA 4 339 339 ALA ALA C . n C 1 5 VAL 5 340 340 VAL VAL C . n C 1 6 TYR 6 341 341 TYR TYR C . n C 1 7 PRO 7 342 342 PRO PRO C . n C 1 8 CYS 8 343 343 CYS CYS C . n C 1 9 GLY 9 344 344 GLY GLY C . n C 1 10 ILE 10 345 345 ILE ILE C . n C 1 11 CYS 11 346 346 CYS CYS C . n C 1 12 THR 12 347 347 THR THR C . n C 1 13 ASN 13 348 348 ASN ASN C . n C 1 14 GLU 14 349 349 GLU GLU C . n C 1 15 VAL 15 350 350 VAL VAL C . n C 1 16 ASN 16 351 351 ASN ASN C . n C 1 17 ASP 17 352 352 ASP ASP C . n C 1 18 ASP 18 353 353 ASP ASP C . n C 1 19 GLN 19 354 354 GLN GLN C . n C 1 20 ASP 20 355 355 ASP ASP C . n C 1 21 ALA 21 356 356 ALA ALA C . n C 1 22 ILE 22 357 357 ILE ILE C . n C 1 23 LEU 23 358 358 LEU LEU C . n C 1 24 CYS 24 359 359 CYS CYS C . n C 1 25 GLU 25 360 360 GLU GLU C . n C 1 26 ALA 26 361 361 ALA ALA C . n C 1 27 SER 27 362 362 SER SER C . n C 1 28 CYS 28 363 363 CYS CYS C . n C 1 29 GLN 29 364 364 GLN GLN C . n C 1 30 LYS 30 365 365 LYS LYS C . n C 1 31 TRP 31 366 366 TRP TRP C . n C 1 32 PHE 32 367 367 PHE PHE C . n C 1 33 HIS 33 368 368 HIS HIS C . n C 1 34 ARG 34 369 369 ARG ARG C . n C 1 35 ILE 35 370 370 ILE ILE C . n C 1 36 CYS 36 371 371 CYS CYS C . n C 1 37 THR 37 372 372 THR THR C . n C 1 38 GLY 38 373 373 GLY GLY C . n C 1 39 MET 39 374 374 MET MET C . n C 1 40 THR 40 375 375 THR THR C . n C 1 41 GLU 41 376 376 GLU GLU C . n C 1 42 THR 42 377 377 THR THR C . n C 1 43 ALA 43 378 378 ALA ALA C . n C 1 44 TYR 44 379 379 TYR TYR C . n C 1 45 GLY 45 380 380 GLY GLY C . n C 1 46 LEU 46 381 381 LEU LEU C . n C 1 47 LEU 47 382 382 LEU LEU C . n C 1 48 THR 48 383 383 THR THR C . n C 1 49 ALA 49 384 384 ALA ALA C . n C 1 50 GLU 50 385 385 GLU GLU C . n C 1 51 ALA 51 386 386 ALA ALA C . n C 1 52 SER 52 387 387 SER SER C . n C 1 53 ALA 53 388 388 ALA ALA C . n C 1 54 VAL 54 389 389 VAL VAL C . n C 1 55 TRP 55 390 390 TRP TRP C . n C 1 56 GLY 56 391 391 GLY GLY C . n C 1 57 CYS 57 392 392 CYS CYS C . n C 1 58 ASP 58 393 393 ASP ASP C . n C 1 59 THR 59 394 394 THR THR C . n C 1 60 CYS 60 395 395 CYS CYS C . n C 1 61 MET 61 396 396 MET MET C . n C 1 62 ALA 62 397 397 ALA ALA C . n C 1 63 ASP 63 398 ? ? ? C . n D 2 1 GLY 1 174 174 GLY GLY D . n D 2 2 ALA 2 175 175 ALA ALA D . n D 2 3 MET 3 176 176 MET MET D . n D 2 4 VAL 4 177 177 VAL VAL D . n D 2 5 TYR 5 178 178 TYR TYR D . n D 2 6 VAL 6 179 179 VAL VAL D . n D 2 7 PHE 7 180 180 PHE PHE D . n D 2 8 SER 8 181 181 SER SER D . n D 2 9 THR 9 182 182 THR THR D . n D 2 10 GLU 10 183 183 GLU GLU D . n D 2 11 MET 11 184 184 MET MET D . n D 2 12 ALA 12 185 185 ALA ALA D . n D 2 13 ASN 13 186 186 ASN ASN D . n D 2 14 LYS 14 187 187 LYS LYS D . n D 2 15 ALA 15 188 188 ALA ALA D . n D 2 16 ALA 16 189 189 ALA ALA D . n D 2 17 GLU 17 190 190 GLU GLU D . n D 2 18 ALA 18 191 191 ALA ALA D . n D 2 19 VAL 19 192 192 VAL VAL D . n D 2 20 LEU 20 193 193 LEU LEU D . n D 2 21 LYS 21 194 194 LYS LYS D . n D 2 22 GLY 22 195 195 GLY GLY D . n D 2 23 GLN 23 196 196 GLN GLN D . n D 2 24 VAL 24 197 197 VAL VAL D . n D 2 25 GLU 25 198 198 GLU GLU D . n D 2 26 THR 26 199 199 THR THR D . n D 2 27 ILE 27 200 200 ILE ILE D . n D 2 28 VAL 28 201 201 VAL VAL D . n D 2 29 SER 29 202 202 SER SER D . n D 2 30 PHE 30 203 ? ? ? D . n D 2 31 HIS 31 204 ? ? ? D . n D 2 32 ILE 32 205 ? ? ? D . n E 3 1 ALA 1 1 1 ALA ALA P . n E 3 2 ARG 2 2 2 ARG ARG P . n E 3 3 THR 3 3 3 THR THR P . n E 3 4 MLY 4 4 4 MLY MLY P . n E 3 5 GLN 5 5 5 GLN GLN P . n E 3 6 THR 6 6 6 THR THR P . n E 3 7 ALA 7 7 7 ALA ALA P . n F 3 1 ALA 1 1 1 ALA ALA R . n F 3 2 ARG 2 2 2 ARG ARG R . n F 3 3 THR 3 3 3 THR THR R . n F 3 4 MLY 4 4 4 MLY MLY R . n F 3 5 GLN 5 5 5 GLN GLN R . n F 3 6 THR 6 6 6 THR THR R . n F 3 7 ALA 7 7 7 ALA ALA R . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL 1 1399 1399 GOL GOL A . H 5 ZN 1 1400 1400 ZN ZN A . I 5 ZN 1 1401 1401 ZN ZN A . J 5 ZN 1 1398 1398 ZN ZN C . K 5 ZN 1 1399 1399 ZN ZN C . L 6 HOH 1 2001 2001 HOH HOH A . L 6 HOH 2 2002 2002 HOH HOH A . L 6 HOH 3 2003 2003 HOH HOH A . L 6 HOH 4 2004 2004 HOH HOH A . L 6 HOH 5 2005 2005 HOH HOH A . L 6 HOH 6 2006 2006 HOH HOH A . L 6 HOH 7 2007 2007 HOH HOH A . L 6 HOH 8 2008 2008 HOH HOH A . L 6 HOH 9 2009 2009 HOH HOH A . L 6 HOH 10 2010 2010 HOH HOH A . L 6 HOH 11 2011 2011 HOH HOH A . L 6 HOH 12 2012 2012 HOH HOH A . L 6 HOH 13 2013 2013 HOH HOH A . L 6 HOH 14 2014 2014 HOH HOH A . L 6 HOH 15 2015 2015 HOH HOH A . L 6 HOH 16 2016 2016 HOH HOH A . L 6 HOH 17 2017 2017 HOH HOH A . L 6 HOH 18 2018 2018 HOH HOH A . L 6 HOH 19 2019 2019 HOH HOH A . L 6 HOH 20 2020 2020 HOH HOH A . L 6 HOH 21 2021 2021 HOH HOH A . L 6 HOH 22 2022 2022 HOH HOH A . L 6 HOH 23 2023 2023 HOH HOH A . L 6 HOH 24 2024 2024 HOH HOH A . L 6 HOH 25 2025 2025 HOH HOH A . L 6 HOH 26 2026 2026 HOH HOH A . L 6 HOH 27 2027 2027 HOH HOH A . L 6 HOH 28 2028 2028 HOH HOH A . L 6 HOH 29 2029 2029 HOH HOH A . L 6 HOH 30 2030 2030 HOH HOH A . L 6 HOH 31 2031 2031 HOH HOH A . L 6 HOH 32 2032 2032 HOH HOH A . L 6 HOH 33 2033 2033 HOH HOH A . L 6 HOH 34 2034 2034 HOH HOH A . L 6 HOH 35 2035 2035 HOH HOH A . L 6 HOH 36 2036 2036 HOH HOH A . L 6 HOH 37 2037 2037 HOH HOH A . L 6 HOH 38 2038 2038 HOH HOH A . L 6 HOH 39 2039 2039 HOH HOH A . L 6 HOH 40 2040 2040 HOH HOH A . L 6 HOH 41 2041 2041 HOH HOH A . L 6 HOH 42 2042 2042 HOH HOH A . L 6 HOH 43 2043 2043 HOH HOH A . L 6 HOH 44 2044 2044 HOH HOH A . L 6 HOH 45 2045 2045 HOH HOH A . L 6 HOH 46 2046 2046 HOH HOH A . L 6 HOH 47 2047 2047 HOH HOH A . L 6 HOH 48 2048 2048 HOH HOH A . L 6 HOH 49 2049 2049 HOH HOH A . L 6 HOH 50 2050 2050 HOH HOH A . L 6 HOH 51 2051 2051 HOH HOH A . L 6 HOH 52 2052 2052 HOH HOH A . L 6 HOH 53 2053 2053 HOH HOH A . L 6 HOH 54 2054 2054 HOH HOH A . L 6 HOH 55 2055 2055 HOH HOH A . L 6 HOH 56 2056 2056 HOH HOH A . L 6 HOH 57 2057 2057 HOH HOH A . L 6 HOH 58 2058 2058 HOH HOH A . L 6 HOH 59 2059 2059 HOH HOH A . L 6 HOH 60 2060 2060 HOH HOH A . L 6 HOH 61 2061 2061 HOH HOH A . L 6 HOH 62 2062 2062 HOH HOH A . L 6 HOH 63 2063 2063 HOH HOH A . L 6 HOH 64 2064 2064 HOH HOH A . L 6 HOH 65 2065 2065 HOH HOH A . L 6 HOH 66 2066 2066 HOH HOH A . L 6 HOH 67 2067 2067 HOH HOH A . L 6 HOH 68 2068 2068 HOH HOH A . L 6 HOH 69 2069 2069 HOH HOH A . L 6 HOH 70 2070 2070 HOH HOH A . L 6 HOH 71 2071 2071 HOH HOH A . L 6 HOH 72 2072 2072 HOH HOH A . L 6 HOH 73 2073 2073 HOH HOH A . L 6 HOH 74 2074 2074 HOH HOH A . L 6 HOH 75 2075 2075 HOH HOH A . L 6 HOH 76 2076 2076 HOH HOH A . L 6 HOH 77 2077 2077 HOH HOH A . L 6 HOH 78 2078 2078 HOH HOH A . M 6 HOH 1 2001 2001 HOH HOH B . M 6 HOH 2 2002 2002 HOH HOH B . M 6 HOH 3 2003 2003 HOH HOH B . M 6 HOH 4 2004 2004 HOH HOH B . M 6 HOH 5 2005 2005 HOH HOH B . M 6 HOH 6 2006 2006 HOH HOH B . M 6 HOH 7 2007 2007 HOH HOH B . M 6 HOH 8 2008 2008 HOH HOH B . M 6 HOH 9 2009 2009 HOH HOH B . M 6 HOH 10 2010 2010 HOH HOH B . M 6 HOH 11 2011 2011 HOH HOH B . M 6 HOH 12 2012 2012 HOH HOH B . M 6 HOH 13 2013 2013 HOH HOH B . M 6 HOH 14 2014 2014 HOH HOH B . M 6 HOH 15 2015 2015 HOH HOH B . M 6 HOH 16 2016 2016 HOH HOH B . M 6 HOH 17 2017 2017 HOH HOH B . M 6 HOH 18 2018 2018 HOH HOH B . M 6 HOH 19 2019 2019 HOH HOH B . M 6 HOH 20 2020 2020 HOH HOH B . M 6 HOH 21 2021 2021 HOH HOH B . M 6 HOH 22 2022 2022 HOH HOH B . M 6 HOH 23 2023 2023 HOH HOH B . M 6 HOH 24 2024 2024 HOH HOH B . M 6 HOH 25 2025 2025 HOH HOH B . M 6 HOH 26 2026 2026 HOH HOH B . M 6 HOH 27 2027 2027 HOH HOH B . M 6 HOH 28 2028 2028 HOH HOH B . M 6 HOH 29 2029 2029 HOH HOH B . M 6 HOH 30 2030 2030 HOH HOH B . N 6 HOH 1 2001 2001 HOH HOH C . N 6 HOH 2 2002 2002 HOH HOH C . N 6 HOH 3 2003 2003 HOH HOH C . N 6 HOH 4 2004 2004 HOH HOH C . N 6 HOH 5 2005 2005 HOH HOH C . N 6 HOH 6 2006 2006 HOH HOH C . N 6 HOH 7 2007 2007 HOH HOH C . N 6 HOH 8 2008 2008 HOH HOH C . N 6 HOH 9 2009 2009 HOH HOH C . N 6 HOH 10 2010 2010 HOH HOH C . N 6 HOH 11 2011 2011 HOH HOH C . N 6 HOH 12 2012 2012 HOH HOH C . N 6 HOH 13 2013 2013 HOH HOH C . N 6 HOH 14 2014 2014 HOH HOH C . N 6 HOH 15 2015 2015 HOH HOH C . N 6 HOH 16 2016 2016 HOH HOH C . N 6 HOH 17 2017 2017 HOH HOH C . N 6 HOH 18 2018 2018 HOH HOH C . N 6 HOH 19 2019 2019 HOH HOH C . N 6 HOH 20 2020 2020 HOH HOH C . N 6 HOH 21 2021 2021 HOH HOH C . N 6 HOH 22 2022 2022 HOH HOH C . N 6 HOH 23 2023 2023 HOH HOH C . N 6 HOH 24 2024 2024 HOH HOH C . N 6 HOH 25 2025 2025 HOH HOH C . N 6 HOH 26 2026 2026 HOH HOH C . N 6 HOH 27 2027 2027 HOH HOH C . N 6 HOH 28 2028 2028 HOH HOH C . N 6 HOH 29 2029 2029 HOH HOH C . N 6 HOH 30 2030 2030 HOH HOH C . N 6 HOH 31 2031 2031 HOH HOH C . N 6 HOH 32 2032 2032 HOH HOH C . N 6 HOH 33 2033 2033 HOH HOH C . N 6 HOH 34 2034 2034 HOH HOH C . N 6 HOH 35 2035 2035 HOH HOH C . N 6 HOH 36 2036 2036 HOH HOH C . N 6 HOH 37 2037 2037 HOH HOH C . N 6 HOH 38 2038 2038 HOH HOH C . N 6 HOH 39 2039 2039 HOH HOH C . N 6 HOH 40 2040 2040 HOH HOH C . N 6 HOH 41 2041 2041 HOH HOH C . N 6 HOH 42 2042 2042 HOH HOH C . N 6 HOH 43 2043 2043 HOH HOH C . N 6 HOH 44 2044 2044 HOH HOH C . N 6 HOH 45 2045 2045 HOH HOH C . N 6 HOH 46 2046 2046 HOH HOH C . N 6 HOH 47 2047 2047 HOH HOH C . N 6 HOH 48 2048 2048 HOH HOH C . N 6 HOH 49 2049 2049 HOH HOH C . N 6 HOH 50 2050 2050 HOH HOH C . N 6 HOH 51 2051 2051 HOH HOH C . N 6 HOH 52 2052 2052 HOH HOH C . N 6 HOH 53 2053 2053 HOH HOH C . N 6 HOH 54 2054 2054 HOH HOH C . N 6 HOH 55 2055 2055 HOH HOH C . N 6 HOH 56 2056 2056 HOH HOH C . N 6 HOH 57 2057 2057 HOH HOH C . N 6 HOH 58 2058 2058 HOH HOH C . N 6 HOH 59 2059 2059 HOH HOH C . N 6 HOH 60 2060 2060 HOH HOH C . N 6 HOH 61 2061 2061 HOH HOH C . O 6 HOH 1 2001 2001 HOH HOH D . O 6 HOH 2 2002 2002 HOH HOH D . O 6 HOH 3 2003 2003 HOH HOH D . O 6 HOH 4 2004 2004 HOH HOH D . O 6 HOH 5 2006 2006 HOH HOH D . O 6 HOH 6 2007 2007 HOH HOH D . O 6 HOH 7 2008 2008 HOH HOH D . O 6 HOH 8 2009 2009 HOH HOH D . O 6 HOH 9 2010 2010 HOH HOH D . O 6 HOH 10 2011 2011 HOH HOH D . O 6 HOH 11 2012 2012 HOH HOH D . O 6 HOH 12 2013 2013 HOH HOH D . O 6 HOH 13 2014 2014 HOH HOH D . O 6 HOH 14 2015 2015 HOH HOH D . O 6 HOH 15 2016 2016 HOH HOH D . O 6 HOH 16 2017 2017 HOH HOH D . O 6 HOH 17 2018 2018 HOH HOH D . O 6 HOH 18 2019 2019 HOH HOH D . O 6 HOH 19 2020 2020 HOH HOH D . O 6 HOH 20 2021 2021 HOH HOH D . O 6 HOH 21 2022 2022 HOH HOH D . P 6 HOH 1 2001 2001 HOH HOH P . P 6 HOH 2 2002 2002 HOH HOH P . P 6 HOH 3 2003 2003 HOH HOH P . P 6 HOH 4 2004 2004 HOH HOH P . P 6 HOH 5 2005 2005 HOH HOH P . P 6 HOH 6 2006 2006 HOH HOH P . P 6 HOH 7 2007 2007 HOH HOH P . P 6 HOH 8 2008 2008 HOH HOH P . P 6 HOH 9 2009 2009 HOH HOH P . Q 6 HOH 1 2001 2001 HOH HOH R . Q 6 HOH 2 2002 2002 HOH HOH R . Q 6 HOH 3 2003 2003 HOH HOH R . Q 6 HOH 4 2004 2004 HOH HOH R . Q 6 HOH 5 2005 2005 HOH HOH R . Q 6 HOH 6 2006 2006 HOH HOH R . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 E MLY 4 P MLY 4 ? LYS N-DIMETHYL-LYSINE 2 F MLY 4 R MLY 4 ? LYS N-DIMETHYL-LYSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS trimeric 3 2 author_and_software_defined_assembly PQS trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,G,H,I,L,M,P 2 1 C,D,F,J,K,N,O,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2550 ? 1 MORE -20 ? 1 'SSA (A^2)' 7490 ? 2 'ABSA (A^2)' 2460 ? 2 MORE -19 ? 2 'SSA (A^2)' 7500 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 343 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 11 ? A CYS 346 ? 1_555 108.2 ? 2 SG ? A CYS 8 ? A CYS 343 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 ND1 ? A HIS 33 ? A HIS 368 ? 1_555 102.0 ? 3 SG ? A CYS 11 ? A CYS 346 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 ND1 ? A HIS 33 ? A HIS 368 ? 1_555 98.7 ? 4 SG ? A CYS 8 ? A CYS 343 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 36 ? A CYS 371 ? 1_555 119.2 ? 5 SG ? A CYS 11 ? A CYS 346 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 36 ? A CYS 371 ? 1_555 109.6 ? 6 ND1 ? A HIS 33 ? A HIS 368 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 36 ? A CYS 371 ? 1_555 116.9 ? 7 SG ? A CYS 24 ? A CYS 359 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 28 ? A CYS 363 ? 1_555 106.1 ? 8 SG ? A CYS 24 ? A CYS 359 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 57 ? A CYS 392 ? 1_555 115.7 ? 9 SG ? A CYS 28 ? A CYS 363 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 57 ? A CYS 392 ? 1_555 116.5 ? 10 SG ? A CYS 24 ? A CYS 359 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 60 ? A CYS 395 ? 1_555 110.7 ? 11 SG ? A CYS 28 ? A CYS 363 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 60 ? A CYS 395 ? 1_555 107.1 ? 12 SG ? A CYS 57 ? A CYS 392 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 60 ? A CYS 395 ? 1_555 100.3 ? 13 SG ? C CYS 8 ? C CYS 343 ? 1_555 ZN ? J ZN . ? C ZN 1398 ? 1_555 SG ? C CYS 11 ? C CYS 346 ? 1_555 109.2 ? 14 SG ? C CYS 8 ? C CYS 343 ? 1_555 ZN ? J ZN . ? C ZN 1398 ? 1_555 ND1 ? C HIS 33 ? C HIS 368 ? 1_555 101.7 ? 15 SG ? C CYS 11 ? C CYS 346 ? 1_555 ZN ? J ZN . ? C ZN 1398 ? 1_555 ND1 ? C HIS 33 ? C HIS 368 ? 1_555 97.5 ? 16 SG ? C CYS 8 ? C CYS 343 ? 1_555 ZN ? J ZN . ? C ZN 1398 ? 1_555 SG ? C CYS 36 ? C CYS 371 ? 1_555 118.6 ? 17 SG ? C CYS 11 ? C CYS 346 ? 1_555 ZN ? J ZN . ? C ZN 1398 ? 1_555 SG ? C CYS 36 ? C CYS 371 ? 1_555 112.2 ? 18 ND1 ? C HIS 33 ? C HIS 368 ? 1_555 ZN ? J ZN . ? C ZN 1398 ? 1_555 SG ? C CYS 36 ? C CYS 371 ? 1_555 115.3 ? 19 SG ? C CYS 24 ? C CYS 359 ? 1_555 ZN ? K ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 28 ? C CYS 363 ? 1_555 105.4 ? 20 SG ? C CYS 24 ? C CYS 359 ? 1_555 ZN ? K ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 57 ? C CYS 392 ? 1_555 114.7 ? 21 SG ? C CYS 28 ? C CYS 363 ? 1_555 ZN ? K ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 57 ? C CYS 392 ? 1_555 116.3 ? 22 SG ? C CYS 24 ? C CYS 359 ? 1_555 ZN ? K ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 60 ? C CYS 395 ? 1_555 112.7 ? 23 SG ? C CYS 28 ? C CYS 363 ? 1_555 ZN ? K ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 60 ? C CYS 395 ? 1_555 109.1 ? 24 SG ? C CYS 57 ? C CYS 392 ? 1_555 ZN ? K ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 60 ? C CYS 395 ? 1_555 98.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-17 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2019-05-29 6 'Structure model' 1 5 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Experimental preparation' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' Other 13 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_conn 5 5 'Structure model' exptl_crystal_grow 6 5 'Structure model' struct_biol 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' database_2 10 6 'Structure model' pdbx_database_status 11 6 'Structure model' pdbx_initial_refinement_model 12 6 'Structure model' pdbx_struct_conn_angle 13 6 'Structure model' struct_conn 14 6 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_exptl_crystal_grow.method' 5 6 'Structure model' '_database_2.pdbx_DOI' 6 6 'Structure model' '_database_2.pdbx_database_accession' 7 6 'Structure model' '_pdbx_database_status.status_code_sf' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 6 'Structure model' '_pdbx_struct_conn_angle.value' 19 6 'Structure model' '_struct_conn.conn_type_id' 20 6 'Structure model' '_struct_conn.id' 21 6 'Structure model' '_struct_conn.pdbx_dist_value' 22 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 6 'Structure model' '_struct_conn_type.id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.3.0037 ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 347 ? ? 74.07 -5.38 2 1 SER A 362 ? ? -159.86 -71.20 3 1 ILE C 345 ? ? -104.97 -60.95 4 1 THR C 347 ? ? 73.04 -1.99 5 1 SER C 362 ? ? -154.04 -66.97 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 336 ? A GLY 1 2 1 Y 1 A ALA 337 ? A ALA 2 3 1 Y 1 B HIS 204 ? B HIS 31 4 1 Y 1 B ILE 205 ? B ILE 32 5 1 Y 1 C ASP 398 ? C ASP 63 6 1 Y 1 D PHE 203 ? D PHE 30 7 1 Y 1 D HIS 204 ? D HIS 31 8 1 Y 1 D ILE 205 ? D ILE 32 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 MLY N N N N 264 MLY CA C N S 265 MLY CB C N N 266 MLY CG C N N 267 MLY CD C N N 268 MLY CE C N N 269 MLY NZ N N N 270 MLY CH1 C N N 271 MLY CH2 C N N 272 MLY C C N N 273 MLY O O N N 274 MLY OXT O N N 275 MLY H H N N 276 MLY H2 H N N 277 MLY HA H N N 278 MLY HB2 H N N 279 MLY HB3 H N N 280 MLY HG2 H N N 281 MLY HG3 H N N 282 MLY HD2 H N N 283 MLY HD3 H N N 284 MLY HE2 H N N 285 MLY HE3 H N N 286 MLY HH11 H N N 287 MLY HH12 H N N 288 MLY HH13 H N N 289 MLY HH21 H N N 290 MLY HH22 H N N 291 MLY HH23 H N N 292 MLY HXT H N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 ZN ZN ZN N N 435 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 MLY N CA sing N N 250 MLY N H sing N N 251 MLY N H2 sing N N 252 MLY CA CB sing N N 253 MLY CA C sing N N 254 MLY CA HA sing N N 255 MLY CB CG sing N N 256 MLY CB HB2 sing N N 257 MLY CB HB3 sing N N 258 MLY CG CD sing N N 259 MLY CG HG2 sing N N 260 MLY CG HG3 sing N N 261 MLY CD CE sing N N 262 MLY CD HD2 sing N N 263 MLY CD HD3 sing N N 264 MLY CE NZ sing N N 265 MLY CE HE2 sing N N 266 MLY CE HE3 sing N N 267 MLY NZ CH1 sing N N 268 MLY NZ CH2 sing N N 269 MLY CH1 HH11 sing N N 270 MLY CH1 HH12 sing N N 271 MLY CH1 HH13 sing N N 272 MLY CH2 HH21 sing N N 273 MLY CH2 HH22 sing N N 274 MLY CH2 HH23 sing N N 275 MLY C O doub N N 276 MLY C OXT sing N N 277 MLY OXT HXT sing N N 278 PHE N CA sing N N 279 PHE N H sing N N 280 PHE N H2 sing N N 281 PHE CA C sing N N 282 PHE CA CB sing N N 283 PHE CA HA sing N N 284 PHE C O doub N N 285 PHE C OXT sing N N 286 PHE CB CG sing N N 287 PHE CB HB2 sing N N 288 PHE CB HB3 sing N N 289 PHE CG CD1 doub Y N 290 PHE CG CD2 sing Y N 291 PHE CD1 CE1 sing Y N 292 PHE CD1 HD1 sing N N 293 PHE CD2 CE2 doub Y N 294 PHE CD2 HD2 sing N N 295 PHE CE1 CZ doub Y N 296 PHE CE1 HE1 sing N N 297 PHE CE2 CZ sing Y N 298 PHE CE2 HE2 sing N N 299 PHE CZ HZ sing N N 300 PHE OXT HXT sing N N 301 PRO N CA sing N N 302 PRO N CD sing N N 303 PRO N H sing N N 304 PRO CA C sing N N 305 PRO CA CB sing N N 306 PRO CA HA sing N N 307 PRO C O doub N N 308 PRO C OXT sing N N 309 PRO CB CG sing N N 310 PRO CB HB2 sing N N 311 PRO CB HB3 sing N N 312 PRO CG CD sing N N 313 PRO CG HG2 sing N N 314 PRO CG HG3 sing N N 315 PRO CD HD2 sing N N 316 PRO CD HD3 sing N N 317 PRO OXT HXT sing N N 318 SER N CA sing N N 319 SER N H sing N N 320 SER N H2 sing N N 321 SER CA C sing N N 322 SER CA CB sing N N 323 SER CA HA sing N N 324 SER C O doub N N 325 SER C OXT sing N N 326 SER CB OG sing N N 327 SER CB HB2 sing N N 328 SER CB HB3 sing N N 329 SER OG HG sing N N 330 SER OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TRP N CA sing N N 348 TRP N H sing N N 349 TRP N H2 sing N N 350 TRP CA C sing N N 351 TRP CA CB sing N N 352 TRP CA HA sing N N 353 TRP C O doub N N 354 TRP C OXT sing N N 355 TRP CB CG sing N N 356 TRP CB HB2 sing N N 357 TRP CB HB3 sing N N 358 TRP CG CD1 doub Y N 359 TRP CG CD2 sing Y N 360 TRP CD1 NE1 sing Y N 361 TRP CD1 HD1 sing N N 362 TRP CD2 CE2 doub Y N 363 TRP CD2 CE3 sing Y N 364 TRP NE1 CE2 sing Y N 365 TRP NE1 HE1 sing N N 366 TRP CE2 CZ2 sing Y N 367 TRP CE3 CZ3 doub Y N 368 TRP CE3 HE3 sing N N 369 TRP CZ2 CH2 doub Y N 370 TRP CZ2 HZ2 sing N N 371 TRP CZ3 CH2 sing Y N 372 TRP CZ3 HZ3 sing N N 373 TRP CH2 HH2 sing N N 374 TRP OXT HXT sing N N 375 TYR N CA sing N N 376 TYR N H sing N N 377 TYR N H2 sing N N 378 TYR CA C sing N N 379 TYR CA CB sing N N 380 TYR CA HA sing N N 381 TYR C O doub N N 382 TYR C OXT sing N N 383 TYR CB CG sing N N 384 TYR CB HB2 sing N N 385 TYR CB HB3 sing N N 386 TYR CG CD1 doub Y N 387 TYR CG CD2 sing Y N 388 TYR CD1 CE1 sing Y N 389 TYR CD1 HD1 sing N N 390 TYR CD2 CE2 doub Y N 391 TYR CD2 HD2 sing N N 392 TYR CE1 CZ doub Y N 393 TYR CE1 HE1 sing N N 394 TYR CE2 CZ sing Y N 395 TYR CE2 HE2 sing N N 396 TYR CZ OH sing N N 397 TYR OH HH sing N N 398 TYR OXT HXT sing N N 399 VAL N CA sing N N 400 VAL N H sing N N 401 VAL N H2 sing N N 402 VAL CA C sing N N 403 VAL CA CB sing N N 404 VAL CA HA sing N N 405 VAL C O doub N N 406 VAL C OXT sing N N 407 VAL CB CG1 sing N N 408 VAL CB CG2 sing N N 409 VAL CB HB sing N N 410 VAL CG1 HG11 sing N N 411 VAL CG1 HG12 sing N N 412 VAL CG1 HG13 sing N N 413 VAL CG2 HG21 sing N N 414 VAL CG2 HG22 sing N N 415 VAL CG2 HG23 sing N N 416 VAL OXT HXT sing N N 417 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 'ZINC ION' ZN 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VPB _pdbx_initial_refinement_model.details 'PDB ENTRY 2VPB' #