HEADER DNA BINDING PROTEIN 18-JUN-08 2VW9 TITLE SINGLE STRANDED DNA BINDING PROTEIN COMPLEX FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRANDED DNA BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-134; COMPND 5 SYNONYM: SSB, HELIX-DESTABILIZING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLY-DT; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SG13009; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS DNA REPLICATION, SINGLE-STRANDED DNA, SINGLE-STRANDED DNA BINDING KEYWDS 2 PROTEIN, OLIGONUCLEOTIDE/OLIGOSACCHARIDE BINDING FOLD, HELICOBACTER KEYWDS 3 PYLORI, OB-FOLD, DNA DAMAGE, DNA REPAIR, DNA-BINDING PROTEIN, DNA KEYWDS 4 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.-W.CHAN,C.-H.WANG,Y.-J.LEE,Y.-J.SUN REVDAT 2 13-DEC-23 2VW9 1 REMARK REVDAT 1 02-JUN-09 2VW9 0 JRNL AUTH K.-W.CHAN,Y.-J.LEE,C.-H.WANG,H.HUANG,Y.-J.SUN JRNL TITL SINGLE-STRANDED DNA-BINDING PROTEIN COMPLEX FROM JRNL TITL 2 HELICOBACTER PYLORI SUGGESTS AN SSDNA-BINDING SURFACE. JRNL REF J.MOL.BIOL. V. 388 508 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19285993 JRNL DOI 10.1016/J.JMB.2009.03.022 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 42178.930 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 15951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 784 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2119 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 100 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1647 REMARK 3 NUCLEIC ACID ATOMS : 465 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.28000 REMARK 3 B22 (A**2) : 3.28000 REMARK 3 B33 (A**2) : -6.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 32.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.570 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 61.11 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : WATER_REP.PARAM REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED MISSING REGIONS REMARK 3 CHAIN A RESIDUES 1109-1134 CHAIN B RESIDUES 2106-2134 SSDNA 6, REMARK 3 10-13, 17, 27-29, 34-35 FOLLOW RESIDUES ARE REPLACED TO ALA REMARK 3 CHAIN A K1038, K1039, K1108 CHAIN B K2038, K2039, D2041 REMARK 4 REMARK 4 2VW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1290036538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 51.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EYG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE BUFFER PH5.5, 1.0 M REMARK 280 LI2SO4 AND 0.5 M (NH4)2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.46067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.23033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.23033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.46067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1110 REMARK 465 ASN A 1111 REMARK 465 PRO A 1112 REMARK 465 GLN A 1113 REMARK 465 ALA A 1114 REMARK 465 ASN A 1115 REMARK 465 ALA A 1116 REMARK 465 MET A 1117 REMARK 465 GLN A 1118 REMARK 465 ASP A 1119 REMARK 465 SER A 1120 REMARK 465 ILE A 1121 REMARK 465 MET A 1122 REMARK 465 HIS A 1123 REMARK 465 GLU A 1124 REMARK 465 ASN A 1125 REMARK 465 SER A 1126 REMARK 465 ASN A 1127 REMARK 465 ASN A 1128 REMARK 465 ALA A 1129 REMARK 465 TYR A 1130 REMARK 465 PRO A 1131 REMARK 465 ALA A 1132 REMARK 465 ASN A 1133 REMARK 465 HIS A 1134 REMARK 465 LYS B 2107 REMARK 465 LYS B 2108 REMARK 465 SER B 2109 REMARK 465 ASP B 2110 REMARK 465 ASN B 2111 REMARK 465 PRO B 2112 REMARK 465 GLN B 2113 REMARK 465 ALA B 2114 REMARK 465 ASN B 2115 REMARK 465 ALA B 2116 REMARK 465 MET B 2117 REMARK 465 GLN B 2118 REMARK 465 ASP B 2119 REMARK 465 SER B 2120 REMARK 465 ILE B 2121 REMARK 465 MET B 2122 REMARK 465 HIS B 2123 REMARK 465 GLU B 2124 REMARK 465 ASN B 2125 REMARK 465 SER B 2126 REMARK 465 ASN B 2127 REMARK 465 ASN B 2128 REMARK 465 ALA B 2129 REMARK 465 TYR B 2130 REMARK 465 PRO B 2131 REMARK 465 ALA B 2132 REMARK 465 ASN B 2133 REMARK 465 HIS B 2134 REMARK 465 DT C 6 REMARK 465 DT C 10 REMARK 465 DT C 11 REMARK 465 DT C 12 REMARK 465 DT C 13 REMARK 465 DT C 17 REMARK 465 DT C 27 REMARK 465 DT C 28 REMARK 465 DT C 29 REMARK 465 DT C 34 REMARK 465 DT C 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1038 CG CD CE NZ REMARK 470 LYS A1039 CG CD CE NZ REMARK 470 LYS A1108 CG CD CE NZ REMARK 470 SER A1109 CA C O CB OG REMARK 470 LYS B2038 CG CD CE NZ REMARK 470 LYS B2039 CG CD CE NZ REMARK 470 ASP B2041 CG OD1 OD2 REMARK 470 ASP B2106 CA C O CB CG OD1 OD2 REMARK 470 DT C 7 P OP1 OP2 REMARK 470 DT C 14 P OP1 OP2 REMARK 470 DT C 18 P OP1 OP2 REMARK 470 DT C 30 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 7 O5' - C5' - C4' ANGL. DEV. = -7.6 DEGREES REMARK 500 DT C 15 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT C 18 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 20 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DT C 21 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 DT C 25 O4' - C1' - C2' ANGL. DEV. = 4.2 DEGREES REMARK 500 DT C 30 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 32 O4' - C1' - C2' ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 33 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A1040 -10.34 -43.81 REMARK 500 ASP A1041 -78.30 -86.69 REMARK 500 ASP B2041 97.45 -44.37 REMARK 500 THR B2043 -159.54 -109.87 REMARK 500 ARG B2094 148.44 -174.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A1035 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 7.37 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA", "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. DBREF 2VW9 A 1001 1134 UNP O25841 SSB_HELPY 1 134 DBREF 2VW9 B 2001 2134 UNP O25841 SSB_HELPY 1 134 DBREF 2VW9 C 1 35 PDB 2VW9 2VW9 1 35 SEQRES 1 A 134 MET PHE ASN LYS VAL ILE MET VAL GLY ARG LEU THR ARG SEQRES 2 A 134 ASN VAL GLU LEU LYS TYR LEU PRO SER GLY SER ALA ALA SEQRES 3 A 134 ALA THR ILE GLY LEU ALA THR SER ARG ARG PHE LYS LYS SEQRES 4 A 134 GLN ASP GLY THR LEU GLY GLU GLU VAL CYS PHE ILE ASP SEQRES 5 A 134 ALA ARG LEU PHE GLY ARG THR ALA GLU ILE ALA ASN GLN SEQRES 6 A 134 TYR LEU SER LYS GLY SER SER VAL LEU ILE GLU GLY ARG SEQRES 7 A 134 LEU THR TYR GLU SER TRP MET ASP GLN THR GLY LYS LYS SEQRES 8 A 134 ASN SER ARG HIS THR ILE THR ALA ASP SER LEU GLN PHE SEQRES 9 A 134 MET ASP LYS LYS SER ASP ASN PRO GLN ALA ASN ALA MET SEQRES 10 A 134 GLN ASP SER ILE MET HIS GLU ASN SER ASN ASN ALA TYR SEQRES 11 A 134 PRO ALA ASN HIS SEQRES 1 B 134 MET PHE ASN LYS VAL ILE MET VAL GLY ARG LEU THR ARG SEQRES 2 B 134 ASN VAL GLU LEU LYS TYR LEU PRO SER GLY SER ALA ALA SEQRES 3 B 134 ALA THR ILE GLY LEU ALA THR SER ARG ARG PHE LYS LYS SEQRES 4 B 134 GLN ASP GLY THR LEU GLY GLU GLU VAL CYS PHE ILE ASP SEQRES 5 B 134 ALA ARG LEU PHE GLY ARG THR ALA GLU ILE ALA ASN GLN SEQRES 6 B 134 TYR LEU SER LYS GLY SER SER VAL LEU ILE GLU GLY ARG SEQRES 7 B 134 LEU THR TYR GLU SER TRP MET ASP GLN THR GLY LYS LYS SEQRES 8 B 134 ASN SER ARG HIS THR ILE THR ALA ASP SER LEU GLN PHE SEQRES 9 B 134 MET ASP LYS LYS SER ASP ASN PRO GLN ALA ASN ALA MET SEQRES 10 B 134 GLN ASP SER ILE MET HIS GLU ASN SER ASN ASN ALA TYR SEQRES 11 B 134 PRO ALA ASN HIS SEQRES 1 C 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 C 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 3 C 35 DT DT DT DT DT DT DT DT DT FORMUL 4 HOH *160(H2 O) HELIX 1 1 GLY A 1057 LEU A 1067 1 11 HELIX 2 2 GLY B 2057 LEU B 2067 1 11 SHEET 1 AA 8 VAL A1005 LEU A1011 0 SHEET 2 AA 8 SER A1072 MET A1085 -1 O VAL A1073 N GLY A1009 SHEET 3 AA 8 LYS A1091 PHE A1104 -1 O ASN A1092 N TRP A1084 SHEET 4 AA 8 LEU A1044 PHE A1056 1 O ASP A1052 N ILE A1097 SHEET 5 AA 8 ALA A1025 LYS A1038 -1 O ALA A1027 N LEU A1055 SHEET 6 AA 8 VAL A1005 LEU A1011 -1 O ARG A1010 N ALA A1032 SHEET 7 AA 8 SER A1072 MET A1085 -1 O VAL A1073 N GLY A1009 SHEET 8 AA 8 VAL A1005 LEU A1011 -1 O VAL A1005 N GLY A1077 SHEET 1 BA 8 VAL B2005 LEU B2011 0 SHEET 2 BA 8 SER B2072 MET B2085 -1 O VAL B2073 N GLY B2009 SHEET 3 BA 8 LYS B2091 PHE B2104 -1 O ASN B2092 N TRP B2084 SHEET 4 BA 8 GLY B2045 PHE B2056 1 O ASP B2052 N ILE B2097 SHEET 5 BA 8 ALA B2025 PHE B2037 -1 O ALA B2027 N LEU B2055 SHEET 6 BA 8 VAL B2005 LEU B2011 -1 O ARG B2010 N ALA B2032 SHEET 7 BA 8 SER B2072 MET B2085 -1 O VAL B2073 N GLY B2009 SHEET 8 BA 8 VAL B2005 LEU B2011 -1 O VAL B2005 N GLY B2077 CRYST1 75.562 75.562 117.691 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013234 0.007641 0.000000 0.00000 SCALE2 0.000000 0.015281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008497 0.00000