HEADER OXIDOREDUCTASE 10-OCT-08 2W0X TITLE FACTOR INHIBITING HIF-1 ALPHA WITH PYRIDINE 2,4 DICARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, FACTOR COMPND 5 INHIBITING HIF-1, FIH-1; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROXYLASE, DIOXYGENASE, TRANSCRIPTION, OXIDOREDUCTASE, KEYWDS 2 TRANSCRIPTION ACTIVATOR/INHIBITOR, HYPOXIA EXPDTA X-RAY DIFFRACTION AUTHOR A.CONEJO-GARCIA,B.M.R.LIENARD,I.J.CLIFTON,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 6 13-DEC-23 2W0X 1 REMARK LINK REVDAT 5 21-FEB-18 2W0X 1 AUTHOR JRNL REVDAT 4 05-JUL-17 2W0X 1 REMARK REVDAT 3 29-SEP-10 2W0X 1 JRNL REVDAT 2 22-SEP-10 2W0X 1 KEYWDS JRNL REMARK REVDAT 1 24-NOV-09 2W0X 0 JRNL AUTH A.CONEJO-GARCIA,M.A.MCDONOUGH,C.LOENARZ,L.A.MCNEILL, JRNL AUTH 2 K.S.HEWITSON,W.GE,B.M.LIENARD,C.J.SCHOFIELD,I.J.CLIFTON JRNL TITL STRUCTURAL BASIS FOR BINDING OF CYCLIC 2-OXOGLUTARATE JRNL TITL 2 ANALOGUES TO FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR. JRNL REF BIOORG. MED. CHEM. LETT. V. 20 6125 2010 JRNL REFN ESSN 1464-3405 JRNL PMID 20822901 JRNL DOI 10.1016/J.BMCL.2010.08.032 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.ELKINS,K.S.HEWITSON,L.A.MCNEILL,J.F.SEIBEL, REMARK 1 AUTH 2 I.SCHLEMMINGER,C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL STRUCTURE OF FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR REMARK 1 TITL 2 (HIF) REVEALS MECHANISM OF OXIDATIVE MODIFICATION OF HIF-1 REMARK 1 TITL 3 ALPHA. REMARK 1 REF J.BIOL.CHEM. V. 278 1802 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12446723 REMARK 1 DOI 10.1074/JBC.C200644200 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 30050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6776 - 4.7234 0.99 2989 149 0.1832 0.2261 REMARK 3 2 4.7234 - 3.7501 0.99 2800 168 0.1643 0.2336 REMARK 3 3 3.7501 - 3.2764 0.99 2757 143 0.2025 0.2377 REMARK 3 4 3.2764 - 2.9769 0.97 2727 127 0.2299 0.2496 REMARK 3 5 2.9769 - 2.7636 0.95 2647 129 0.2370 0.2709 REMARK 3 6 2.7636 - 2.6007 0.94 2604 124 0.2338 0.3043 REMARK 3 7 2.6007 - 2.4705 0.93 2530 148 0.2437 0.3075 REMARK 3 8 2.4705 - 2.3630 0.93 2537 147 0.2356 0.3424 REMARK 3 9 2.3630 - 2.2720 0.88 2387 132 0.2424 0.2785 REMARK 3 10 2.2720 - 2.1936 0.87 2364 137 0.2649 0.3152 REMARK 3 11 2.1936 - 2.1250 0.80 2192 112 0.3138 0.3763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 52.63 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.89360 REMARK 3 B22 (A**2) : -3.89360 REMARK 3 B33 (A**2) : 7.78710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.000 2919 REMARK 3 ANGLE : 1.000 3965 REMARK 3 CHIRALITY : 0.070 395 REMARK 3 PLANARITY : 0.000 525 REMARK 3 DIHEDRAL : 19.000 1076 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1290037161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4880 REMARK 200 MONOCHROMATOR : SI (1 1 1) REMARK 200 OPTICS : RH COATED MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 61.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1H2N REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1M HEPES PH REMARK 280 7.5, 5% PEG400, 1MM FESO4, 2MM SUBSTRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.61850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.23550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.23550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.80925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.23550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.23550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.42775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.23550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.23550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.80925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.23550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.23550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.42775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.61850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.47100 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.47100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.61850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 96 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 100 74.56 -109.57 REMARK 500 ASN A 151 -154.57 -110.76 REMARK 500 GLU A 202 41.92 -89.91 REMARK 500 ILE A 210 -58.90 -126.46 REMARK 500 ASP A 237 134.93 -38.95 REMARK 500 ARG A 238 -12.60 78.20 REMARK 500 TYR A 276 -13.64 79.82 REMARK 500 PRO A 303 160.94 -49.90 REMARK 500 LYS A 304 -88.43 -9.05 REMARK 500 ASN A 332 119.82 -160.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PYRIDINE-2,4-DICARBOXYLIC ACID(PD2): PUBCHEM CID 10365 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1350 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 105.1 REMARK 620 3 HIS A 279 NE2 84.0 83.3 REMARK 620 4 PD2 A1351 N1 89.9 164.3 103.1 REMARK 620 5 PD2 A1351 O21 173.2 81.0 93.9 84.2 REMARK 620 6 GOL A1355 O3 82.3 86.7 160.4 90.9 101.2 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PD2 A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1355 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WA4 RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH N,3- DIHYDROXYBENZAMIDE REMARK 900 RELATED ID: 1MZE RELATED DB: PDB REMARK 900 HUMAN FACTOR INHIBITING HIF (FIH1) REMARK 900 RELATED ID: 2CGN RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH SUCCINATE REMARK 900 RELATED ID: 1MZF RELATED DB: PDB REMARK 900 HUMAN FACTOR INHIBITING HIF (FIH1) IN COMPLEX WITH 2-OXOGLUTARATE REMARK 900 RELATED ID: 2WA3 RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH 2-(3- HYDROXYPHENYL)-2-OXOACETIC REMARK 900 ACID REMARK 900 RELATED ID: 1H2N RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1YCI RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH N-(CARBOXYCARBONYL)-D- REMARK 900 PHENYLALANINE REMARK 900 RELATED ID: 1H2K RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 2CGO RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH FUMARATE REMARK 900 RELATED ID: 1IZ3 RELATED DB: PDB REMARK 900 DIMERIC STRUCTURE OF FIH (FACTOR INHIBITING HIF) REMARK 900 RELATED ID: 1H2L RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2M RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE DBREF 2W0X A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET FE2 A1350 1 HET PD2 A1351 12 HET SO4 A1352 5 HET SO4 A1353 5 HET SO4 A1354 5 HET GOL A1355 6 HETNAM FE2 FE (II) ION HETNAM PD2 PYRIDINE-2,4-DICARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE2 FE 2+ FORMUL 3 PD2 C7 H5 N O4 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *200(H2 O) HELIX 1 1 GLU A 19 LEU A 23 5 5 HELIX 2 2 ASP A 28 LEU A 32 5 5 HELIX 3 3 ASP A 49 ASN A 58 1 10 HELIX 4 4 VAL A 70 TRP A 76 5 7 HELIX 5 5 ASP A 77 ILE A 85 1 9 HELIX 6 6 ASP A 104 PHE A 111 5 8 HELIX 7 7 LYS A 124 ARG A 138 1 15 HELIX 8 8 GLY A 155 GLY A 164 1 10 HELIX 9 9 ASN A 166 ARG A 177 1 12 HELIX 10 10 PRO A 220 ASP A 222 5 3 HELIX 11 11 GLN A 223 TYR A 228 1 6 HELIX 12 12 PHE A 252 VAL A 258 5 7 HELIX 13 13 LYS A 311 GLY A 331 1 21 HELIX 14 14 ASN A 332 GLN A 334 5 3 HELIX 15 15 GLU A 335 LYS A 345 1 11 SHEET 1 AA 5 THR A 39 PRO A 41 0 SHEET 2 AA 5 GLY A 260 VAL A 265 1 O GLY A 260 N ARG A 40 SHEET 3 AA 5 LYS A 214 PHE A 219 -1 O LYS A 214 N VAL A 265 SHEET 4 AA 5 TRP A 278 SER A 283 -1 O TRP A 278 N PHE A 219 SHEET 5 AA 5 VAL A 195 HIS A 199 -1 O THR A 196 N ILE A 281 SHEET 1 AB 6 ARG A 44 LEU A 45 0 SHEET 2 AB 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AB 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AB 6 GLN A 204 LYS A 211 -1 O ASN A 205 N ILE A 273 SHEET 5 AB 6 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AB 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 SHEET 1 AC 9 ARG A 44 LEU A 45 0 SHEET 2 AC 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AC 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AC 9 GLN A 204 LYS A 211 -1 O ASN A 205 N ILE A 273 SHEET 5 AC 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AC 9 LEU A 186 GLY A 190 -1 O LEU A 186 N ASN A 294 SHEET 7 AC 9 ARG A 143 THR A 149 -1 O LEU A 146 N ILE A 189 SHEET 8 AC 9 PHE A 90 ALA A 95 -1 O SER A 91 N GLN A 147 SHEET 9 AC 9 ASN A 119 MET A 123 -1 O ASN A 119 N SER A 94 LINK NE2 HIS A 199 FE FE2 A1350 1555 1555 2.28 LINK OD2 ASP A 201 FE FE2 A1350 1555 1555 2.12 LINK NE2 HIS A 279 FE FE2 A1350 1555 1555 2.35 LINK FE FE2 A1350 N1 PD2 A1351 1555 1555 2.11 LINK FE FE2 A1350 O21 PD2 A1351 1555 1555 2.18 LINK FE FE2 A1350 O3 GOL A1355 1555 1555 2.33 CISPEP 1 TYR A 308 PRO A 309 0 3.50 SITE 1 AC1 5 HIS A 199 ASP A 201 HIS A 279 PD2 A1351 SITE 2 AC1 5 GOL A1355 SITE 1 AC2 14 TYR A 145 THR A 196 HIS A 199 ASP A 201 SITE 2 AC2 14 ASN A 205 PHE A 207 LYS A 214 HIS A 279 SITE 3 AC2 14 ILE A 281 ASN A 294 TRP A 296 FE2 A1350 SITE 4 AC2 14 GOL A1355 HOH A2111 SITE 1 AC3 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC4 5 ARG A 143 GLU A 192 GLY A 193 LEU A 285 SITE 2 AC4 5 ASN A 286 SITE 1 AC5 5 LYS A 107 GLU A 202 ARG A 320 HOH A2068 SITE 2 AC5 5 HOH A2199 SITE 1 AC6 8 TYR A 102 LEU A 186 HIS A 199 ASP A 201 SITE 2 AC6 8 TRP A 296 FE2 A1350 PD2 A1351 HOH A2200 CRYST1 86.471 86.471 147.237 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006792 0.00000