data_2WQH # _entry.id 2WQH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2WQH pdb_00002wqh 10.2210/pdb2wqh/pdb PDBE EBI-40828 ? ? WWPDB D_1290040828 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2WQH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-08-21 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Krachler, A.M.' 1 ? 'Sharma, A.' 2 ? 'Kleanthous, C.' 3 ? # _citation.id primary _citation.title 'Self-association of TPR domains: Lessons learned from a designed, consensus-based TPR oligomer.' _citation.journal_abbrev Proteins _citation.journal_volume 78 _citation.page_first 2131 _citation.page_last 2143 _citation.year 2010 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 1097-0134 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20455268 _citation.pdbx_database_id_DOI 10.1002/prot.22726 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Krachler, A.M.' 1 ? primary 'Sharma, A.' 2 ? primary 'Kleanthous, C.' 3 ? # _cell.entry_id 2WQH _cell.length_a 62.284 _cell.length_b 62.284 _cell.length_c 120.368 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WQH _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat CTPR3Y3 14513.486 1 ? ? ? 'THE DE NOVO PROTEIN HAS THE FOLLOWING MUTATIONS D39Y, D73Y, D107Y' 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 1 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 PRO n 1 6 GLY n 1 7 ASN n 1 8 SER n 1 9 ALA n 1 10 GLU n 1 11 ALA n 1 12 TRP n 1 13 TYR n 1 14 ASN n 1 15 LEU n 1 16 GLY n 1 17 ASN n 1 18 ALA n 1 19 TYR n 1 20 TYR n 1 21 LYS n 1 22 GLN n 1 23 GLY n 1 24 ASP n 1 25 TYR n 1 26 ASP n 1 27 GLU n 1 28 ALA n 1 29 ILE n 1 30 GLU n 1 31 TYR n 1 32 TYR n 1 33 GLN n 1 34 LYS n 1 35 ALA n 1 36 LEU n 1 37 GLU n 1 38 LEU n 1 39 TYR n 1 40 PRO n 1 41 ASN n 1 42 ASN n 1 43 ALA n 1 44 GLU n 1 45 ALA n 1 46 TRP n 1 47 TYR n 1 48 ASN n 1 49 LEU n 1 50 GLY n 1 51 ASN n 1 52 ALA n 1 53 TYR n 1 54 TYR n 1 55 LYS n 1 56 GLN n 1 57 GLY n 1 58 ASP n 1 59 TYR n 1 60 ASP n 1 61 GLU n 1 62 ALA n 1 63 ILE n 1 64 GLU n 1 65 TYR n 1 66 TYR n 1 67 GLN n 1 68 LYS n 1 69 ALA n 1 70 LEU n 1 71 GLU n 1 72 LEU n 1 73 TYR n 1 74 PRO n 1 75 ASN n 1 76 ASN n 1 77 ALA n 1 78 GLU n 1 79 ALA n 1 80 TRP n 1 81 TYR n 1 82 ASN n 1 83 LEU n 1 84 GLY n 1 85 ASN n 1 86 ALA n 1 87 TYR n 1 88 TYR n 1 89 LYS n 1 90 GLN n 1 91 GLY n 1 92 ASP n 1 93 TYR n 1 94 ASP n 1 95 GLU n 1 96 ALA n 1 97 ILE n 1 98 GLU n 1 99 TYR n 1 100 TYR n 1 101 GLN n 1 102 LYS n 1 103 ALA n 1 104 LEU n 1 105 GLU n 1 106 LEU n 1 107 TYR n 1 108 PRO n 1 109 ASN n 1 110 ASN n 1 111 ALA n 1 112 GLU n 1 113 ALA n 1 114 LYS n 1 115 GLN n 1 116 ASN n 1 117 LEU n 1 118 GLY n 1 119 ASN n 1 120 ALA n 1 121 LYS n 1 122 GLN n 1 123 LYS n 1 124 GLN n 1 125 GLY n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'synthetic construct' _entity_src_nat.pdbx_ncbi_taxonomy_id 32630 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'DE NOVO SYNTHESIS' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2WQH _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 2WQH _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2WQH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2WQH _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 2WQH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 48.72 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M MMT PH 4.0, 25% PEG1500' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-07-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9334 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.9334 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2WQH _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.21 _reflns.number_obs 7412 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.20 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.61 _reflns.B_iso_Wilson_estimate 34.4 _reflns.pdbx_redundancy 8.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.21 _reflns_shell.d_res_low 2.29 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.66 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.54 _reflns_shell.pdbx_redundancy 7.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2WQH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7068 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.22 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 98.56 _refine.ls_R_factor_obs 0.23733 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23513 _refine.ls_R_factor_R_free 0.28487 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 343 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.928 _refine.correlation_coeff_Fo_to_Fc_free 0.876 _refine.B_iso_mean 37.129 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. N-TERMINAL RESIDUES GLY5 AND PRO6 ARE STEROCHEMICALLY REFINED' _refine.pdbx_starting_model 'PDB ENTRY 1NA3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.280 _refine.pdbx_overall_ESU_R_Free 0.233 _refine.overall_SU_ML 0.145 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.541 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 879 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 913 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 49.22 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 954 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.181 1.952 ? 1303 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.015 5.000 ? 109 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.969 26.066 ? 61 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.197 15.000 ? 129 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 114 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 794 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.712 1.500 ? 534 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.470 2.000 ? 840 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.395 3.000 ? 420 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.993 4.500 ? 463 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.202 _refine_ls_shell.d_res_low 2.259 _refine_ls_shell.number_reflns_R_work 505 _refine_ls_shell.R_factor_R_work 0.270 _refine_ls_shell.percent_reflns_obs 97.94 _refine_ls_shell.R_factor_R_free 0.336 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 19 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2WQH _struct.title 'Crystal structure of CTPR3Y3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2WQH _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'DE NOVO PROTEIN, MUTANT, TETRATRICOPEPTIDE, TPR DOMAIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? LEU A 15 ? SER A 8 LEU A 15 1 ? 8 HELX_P HELX_P2 2 ASN A 17 ? GLN A 22 ? ASN A 17 GLN A 22 1 ? 6 HELX_P HELX_P3 3 ASP A 24 ? TYR A 39 ? ASP A 24 TYR A 39 1 ? 16 HELX_P HELX_P4 4 ASN A 42 ? LEU A 49 ? ASN A 42 LEU A 49 1 ? 8 HELX_P HELX_P5 5 ASN A 51 ? GLN A 56 ? ASN A 51 GLN A 56 1 ? 6 HELX_P HELX_P6 6 ASP A 58 ? TYR A 73 ? ASP A 58 TYR A 73 1 ? 16 HELX_P HELX_P7 7 ASN A 76 ? LEU A 83 ? ASN A 76 LEU A 83 1 ? 8 HELX_P HELX_P8 8 ASN A 85 ? GLN A 90 ? ASN A 85 GLN A 90 1 ? 6 HELX_P HELX_P9 9 ASP A 92 ? LEU A 106 ? ASP A 92 LEU A 106 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 5 A . ? PRO 5 A GLY 6 A ? GLY 6 A 1 -18.54 2 TYR 107 A . ? TYR 107 A PRO 108 A ? PRO 108 A 1 -10.92 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MRD 1109 ? 3 'BINDING SITE FOR RESIDUE MRD A 1109' AC2 Software A MPD 1110 ? 2 'BINDING SITE FOR RESIDUE MPD A 1110' AC3 Software A EDO 1111 ? 2 'BINDING SITE FOR RESIDUE EDO A 1111' AC4 Software A EDO 1112 ? 4 'BINDING SITE FOR RESIDUE EDO A 1112' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLN A 67 ? GLN A 67 . ? 1_555 ? 2 AC1 3 LEU A 70 ? LEU A 70 . ? 1_555 ? 3 AC1 3 GLU A 71 ? GLU A 71 . ? 1_555 ? 4 AC2 2 GLN A 56 ? GLN A 56 . ? 1_555 ? 5 AC2 2 GLY A 57 ? GLY A 57 . ? 1_555 ? 6 AC3 2 TYR A 20 ? TYR A 20 . ? 1_555 ? 7 AC3 2 LYS A 55 ? LYS A 55 . ? 1_555 ? 8 AC4 4 PRO A 40 ? PRO A 40 . ? 1_555 ? 9 AC4 4 ASN A 41 ? ASN A 41 . ? 1_555 ? 10 AC4 4 TRP A 46 ? TRP A 46 . ? 1_555 ? 11 AC4 4 LYS A 68 ? LYS A 68 . ? 1_555 ? # _database_PDB_matrix.entry_id 2WQH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2WQH _atom_sites.fract_transf_matrix[1][1] 0.016055 _atom_sites.fract_transf_matrix[1][2] 0.009270 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018539 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008308 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 MET 3 3 ? ? ? A . n A 1 4 ASP 4 4 ? ? ? A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 TRP 46 46 46 TRP TRP A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 TRP 80 80 80 TRP TRP A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 ASN 109 109 ? ? ? A . n A 1 110 ASN 110 110 ? ? ? A . n A 1 111 ALA 111 111 ? ? ? A . n A 1 112 GLU 112 112 ? ? ? A . n A 1 113 ALA 113 113 ? ? ? A . n A 1 114 LYS 114 114 ? ? ? A . n A 1 115 GLN 115 115 ? ? ? A . n A 1 116 ASN 116 116 ? ? ? A . n A 1 117 LEU 117 117 ? ? ? A . n A 1 118 GLY 118 118 ? ? ? A . n A 1 119 ASN 119 119 ? ? ? A . n A 1 120 ALA 120 120 ? ? ? A . n A 1 121 LYS 121 121 ? ? ? A . n A 1 122 GLN 122 122 ? ? ? A . n A 1 123 LYS 123 123 ? ? ? A . n A 1 124 GLN 124 124 ? ? ? A . n A 1 125 GLY 125 125 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD 1 1109 1109 MRD MRD A . C 3 MPD 1 1110 1110 MPD MPD A . D 4 EDO 1 1111 1111 EDO EDO A . E 4 EDO 1 1112 1112 EDO EDO A . F 5 HOH 1 2001 2001 HOH HOH A . F 5 HOH 2 2002 2002 HOH HOH A . F 5 HOH 3 2003 2003 HOH HOH A . F 5 HOH 4 2004 2004 HOH HOH A . F 5 HOH 5 2005 2005 HOH HOH A . F 5 HOH 6 2006 2006 HOH HOH A . F 5 HOH 7 2007 2007 HOH HOH A . F 5 HOH 8 2008 2008 HOH HOH A . F 5 HOH 9 2009 2009 HOH HOH A . F 5 HOH 10 2010 2010 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2600 ? 1 MORE -21.9 ? 1 'SSA (A^2)' 10830 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 60.1840000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-07 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 1 4 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Source and taxonomy' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' Other 9 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' entity_src_nat 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_database_status 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_ISSN' 2 4 'Structure model' '_citation.page_last' 3 4 'Structure model' '_citation.pdbx_database_id_DOI' 4 4 'Structure model' '_citation.title' 5 4 'Structure model' '_entity_src_nat.pdbx_ncbi_taxonomy_id' 6 4 'Structure model' '_entity_src_nat.pdbx_organism_scientific' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' 9 5 'Structure model' '_pdbx_database_status.status_code_sf' 10 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 11 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 12 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.5.0088 ? 1 ? ? ? ? HKL-2000 'data reduction' . ? 2 ? ? ? ? HKL-2000 'data scaling' . ? 3 ? ? ? ? MrBUMP phasing . ? 4 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A MET 3 ? A MET 3 4 1 Y 1 A ASP 4 ? A ASP 4 5 1 Y 1 A ASN 109 ? A ASN 109 6 1 Y 1 A ASN 110 ? A ASN 110 7 1 Y 1 A ALA 111 ? A ALA 111 8 1 Y 1 A GLU 112 ? A GLU 112 9 1 Y 1 A ALA 113 ? A ALA 113 10 1 Y 1 A LYS 114 ? A LYS 114 11 1 Y 1 A GLN 115 ? A GLN 115 12 1 Y 1 A ASN 116 ? A ASN 116 13 1 Y 1 A LEU 117 ? A LEU 117 14 1 Y 1 A GLY 118 ? A GLY 118 15 1 Y 1 A ASN 119 ? A ASN 119 16 1 Y 1 A ALA 120 ? A ALA 120 17 1 Y 1 A LYS 121 ? A LYS 121 18 1 Y 1 A GLN 122 ? A GLN 122 19 1 Y 1 A LYS 123 ? A LYS 123 20 1 Y 1 A GLN 124 ? A GLN 124 21 1 Y 1 A GLY 125 ? A GLY 125 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 EDO C1 C N N 47 EDO O1 O N N 48 EDO C2 C N N 49 EDO O2 O N N 50 EDO H11 H N N 51 EDO H12 H N N 52 EDO HO1 H N N 53 EDO H21 H N N 54 EDO H22 H N N 55 EDO HO2 H N N 56 GLN N N N N 57 GLN CA C N S 58 GLN C C N N 59 GLN O O N N 60 GLN CB C N N 61 GLN CG C N N 62 GLN CD C N N 63 GLN OE1 O N N 64 GLN NE2 N N N 65 GLN OXT O N N 66 GLN H H N N 67 GLN H2 H N N 68 GLN HA H N N 69 GLN HB2 H N N 70 GLN HB3 H N N 71 GLN HG2 H N N 72 GLN HG3 H N N 73 GLN HE21 H N N 74 GLN HE22 H N N 75 GLN HXT H N N 76 GLU N N N N 77 GLU CA C N S 78 GLU C C N N 79 GLU O O N N 80 GLU CB C N N 81 GLU CG C N N 82 GLU CD C N N 83 GLU OE1 O N N 84 GLU OE2 O N N 85 GLU OXT O N N 86 GLU H H N N 87 GLU H2 H N N 88 GLU HA H N N 89 GLU HB2 H N N 90 GLU HB3 H N N 91 GLU HG2 H N N 92 GLU HG3 H N N 93 GLU HE2 H N N 94 GLU HXT H N N 95 GLY N N N N 96 GLY CA C N N 97 GLY C C N N 98 GLY O O N N 99 GLY OXT O N N 100 GLY H H N N 101 GLY H2 H N N 102 GLY HA2 H N N 103 GLY HA3 H N N 104 GLY HXT H N N 105 HOH O O N N 106 HOH H1 H N N 107 HOH H2 H N N 108 ILE N N N N 109 ILE CA C N S 110 ILE C C N N 111 ILE O O N N 112 ILE CB C N S 113 ILE CG1 C N N 114 ILE CG2 C N N 115 ILE CD1 C N N 116 ILE OXT O N N 117 ILE H H N N 118 ILE H2 H N N 119 ILE HA H N N 120 ILE HB H N N 121 ILE HG12 H N N 122 ILE HG13 H N N 123 ILE HG21 H N N 124 ILE HG22 H N N 125 ILE HG23 H N N 126 ILE HD11 H N N 127 ILE HD12 H N N 128 ILE HD13 H N N 129 ILE HXT H N N 130 LEU N N N N 131 LEU CA C N S 132 LEU C C N N 133 LEU O O N N 134 LEU CB C N N 135 LEU CG C N N 136 LEU CD1 C N N 137 LEU CD2 C N N 138 LEU OXT O N N 139 LEU H H N N 140 LEU H2 H N N 141 LEU HA H N N 142 LEU HB2 H N N 143 LEU HB3 H N N 144 LEU HG H N N 145 LEU HD11 H N N 146 LEU HD12 H N N 147 LEU HD13 H N N 148 LEU HD21 H N N 149 LEU HD22 H N N 150 LEU HD23 H N N 151 LEU HXT H N N 152 LYS N N N N 153 LYS CA C N S 154 LYS C C N N 155 LYS O O N N 156 LYS CB C N N 157 LYS CG C N N 158 LYS CD C N N 159 LYS CE C N N 160 LYS NZ N N N 161 LYS OXT O N N 162 LYS H H N N 163 LYS H2 H N N 164 LYS HA H N N 165 LYS HB2 H N N 166 LYS HB3 H N N 167 LYS HG2 H N N 168 LYS HG3 H N N 169 LYS HD2 H N N 170 LYS HD3 H N N 171 LYS HE2 H N N 172 LYS HE3 H N N 173 LYS HZ1 H N N 174 LYS HZ2 H N N 175 LYS HZ3 H N N 176 LYS HXT H N N 177 MET N N N N 178 MET CA C N S 179 MET C C N N 180 MET O O N N 181 MET CB C N N 182 MET CG C N N 183 MET SD S N N 184 MET CE C N N 185 MET OXT O N N 186 MET H H N N 187 MET H2 H N N 188 MET HA H N N 189 MET HB2 H N N 190 MET HB3 H N N 191 MET HG2 H N N 192 MET HG3 H N N 193 MET HE1 H N N 194 MET HE2 H N N 195 MET HE3 H N N 196 MET HXT H N N 197 MPD C1 C N N 198 MPD C2 C N N 199 MPD O2 O N N 200 MPD CM C N N 201 MPD C3 C N N 202 MPD C4 C N S 203 MPD O4 O N N 204 MPD C5 C N N 205 MPD H11 H N N 206 MPD H12 H N N 207 MPD H13 H N N 208 MPD HO2 H N N 209 MPD HM1 H N N 210 MPD HM2 H N N 211 MPD HM3 H N N 212 MPD H31 H N N 213 MPD H32 H N N 214 MPD H4 H N N 215 MPD HO4 H N N 216 MPD H51 H N N 217 MPD H52 H N N 218 MPD H53 H N N 219 MRD C1 C N N 220 MRD C2 C N N 221 MRD O2 O N N 222 MRD CM C N N 223 MRD C3 C N N 224 MRD C4 C N R 225 MRD O4 O N N 226 MRD C5 C N N 227 MRD H1C1 H N N 228 MRD H1C2 H N N 229 MRD H1C3 H N N 230 MRD H2 H N N 231 MRD HMC1 H N N 232 MRD HMC2 H N N 233 MRD HMC3 H N N 234 MRD H3C1 H N N 235 MRD H3C2 H N N 236 MRD H4 H N N 237 MRD HA H N N 238 MRD H5C1 H N N 239 MRD H5C2 H N N 240 MRD H5C3 H N N 241 PRO N N N N 242 PRO CA C N S 243 PRO C C N N 244 PRO O O N N 245 PRO CB C N N 246 PRO CG C N N 247 PRO CD C N N 248 PRO OXT O N N 249 PRO H H N N 250 PRO HA H N N 251 PRO HB2 H N N 252 PRO HB3 H N N 253 PRO HG2 H N N 254 PRO HG3 H N N 255 PRO HD2 H N N 256 PRO HD3 H N N 257 PRO HXT H N N 258 SER N N N N 259 SER CA C N S 260 SER C C N N 261 SER O O N N 262 SER CB C N N 263 SER OG O N N 264 SER OXT O N N 265 SER H H N N 266 SER H2 H N N 267 SER HA H N N 268 SER HB2 H N N 269 SER HB3 H N N 270 SER HG H N N 271 SER HXT H N N 272 TRP N N N N 273 TRP CA C N S 274 TRP C C N N 275 TRP O O N N 276 TRP CB C N N 277 TRP CG C Y N 278 TRP CD1 C Y N 279 TRP CD2 C Y N 280 TRP NE1 N Y N 281 TRP CE2 C Y N 282 TRP CE3 C Y N 283 TRP CZ2 C Y N 284 TRP CZ3 C Y N 285 TRP CH2 C Y N 286 TRP OXT O N N 287 TRP H H N N 288 TRP H2 H N N 289 TRP HA H N N 290 TRP HB2 H N N 291 TRP HB3 H N N 292 TRP HD1 H N N 293 TRP HE1 H N N 294 TRP HE3 H N N 295 TRP HZ2 H N N 296 TRP HZ3 H N N 297 TRP HH2 H N N 298 TRP HXT H N N 299 TYR N N N N 300 TYR CA C N S 301 TYR C C N N 302 TYR O O N N 303 TYR CB C N N 304 TYR CG C Y N 305 TYR CD1 C Y N 306 TYR CD2 C Y N 307 TYR CE1 C Y N 308 TYR CE2 C Y N 309 TYR CZ C Y N 310 TYR OH O N N 311 TYR OXT O N N 312 TYR H H N N 313 TYR H2 H N N 314 TYR HA H N N 315 TYR HB2 H N N 316 TYR HB3 H N N 317 TYR HD1 H N N 318 TYR HD2 H N N 319 TYR HE1 H N N 320 TYR HE2 H N N 321 TYR HH H N N 322 TYR HXT H N N 323 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 EDO C1 O1 sing N N 44 EDO C1 C2 sing N N 45 EDO C1 H11 sing N N 46 EDO C1 H12 sing N N 47 EDO O1 HO1 sing N N 48 EDO C2 O2 sing N N 49 EDO C2 H21 sing N N 50 EDO C2 H22 sing N N 51 EDO O2 HO2 sing N N 52 GLN N CA sing N N 53 GLN N H sing N N 54 GLN N H2 sing N N 55 GLN CA C sing N N 56 GLN CA CB sing N N 57 GLN CA HA sing N N 58 GLN C O doub N N 59 GLN C OXT sing N N 60 GLN CB CG sing N N 61 GLN CB HB2 sing N N 62 GLN CB HB3 sing N N 63 GLN CG CD sing N N 64 GLN CG HG2 sing N N 65 GLN CG HG3 sing N N 66 GLN CD OE1 doub N N 67 GLN CD NE2 sing N N 68 GLN NE2 HE21 sing N N 69 GLN NE2 HE22 sing N N 70 GLN OXT HXT sing N N 71 GLU N CA sing N N 72 GLU N H sing N N 73 GLU N H2 sing N N 74 GLU CA C sing N N 75 GLU CA CB sing N N 76 GLU CA HA sing N N 77 GLU C O doub N N 78 GLU C OXT sing N N 79 GLU CB CG sing N N 80 GLU CB HB2 sing N N 81 GLU CB HB3 sing N N 82 GLU CG CD sing N N 83 GLU CG HG2 sing N N 84 GLU CG HG3 sing N N 85 GLU CD OE1 doub N N 86 GLU CD OE2 sing N N 87 GLU OE2 HE2 sing N N 88 GLU OXT HXT sing N N 89 GLY N CA sing N N 90 GLY N H sing N N 91 GLY N H2 sing N N 92 GLY CA C sing N N 93 GLY CA HA2 sing N N 94 GLY CA HA3 sing N N 95 GLY C O doub N N 96 GLY C OXT sing N N 97 GLY OXT HXT sing N N 98 HOH O H1 sing N N 99 HOH O H2 sing N N 100 ILE N CA sing N N 101 ILE N H sing N N 102 ILE N H2 sing N N 103 ILE CA C sing N N 104 ILE CA CB sing N N 105 ILE CA HA sing N N 106 ILE C O doub N N 107 ILE C OXT sing N N 108 ILE CB CG1 sing N N 109 ILE CB CG2 sing N N 110 ILE CB HB sing N N 111 ILE CG1 CD1 sing N N 112 ILE CG1 HG12 sing N N 113 ILE CG1 HG13 sing N N 114 ILE CG2 HG21 sing N N 115 ILE CG2 HG22 sing N N 116 ILE CG2 HG23 sing N N 117 ILE CD1 HD11 sing N N 118 ILE CD1 HD12 sing N N 119 ILE CD1 HD13 sing N N 120 ILE OXT HXT sing N N 121 LEU N CA sing N N 122 LEU N H sing N N 123 LEU N H2 sing N N 124 LEU CA C sing N N 125 LEU CA CB sing N N 126 LEU CA HA sing N N 127 LEU C O doub N N 128 LEU C OXT sing N N 129 LEU CB CG sing N N 130 LEU CB HB2 sing N N 131 LEU CB HB3 sing N N 132 LEU CG CD1 sing N N 133 LEU CG CD2 sing N N 134 LEU CG HG sing N N 135 LEU CD1 HD11 sing N N 136 LEU CD1 HD12 sing N N 137 LEU CD1 HD13 sing N N 138 LEU CD2 HD21 sing N N 139 LEU CD2 HD22 sing N N 140 LEU CD2 HD23 sing N N 141 LEU OXT HXT sing N N 142 LYS N CA sing N N 143 LYS N H sing N N 144 LYS N H2 sing N N 145 LYS CA C sing N N 146 LYS CA CB sing N N 147 LYS CA HA sing N N 148 LYS C O doub N N 149 LYS C OXT sing N N 150 LYS CB CG sing N N 151 LYS CB HB2 sing N N 152 LYS CB HB3 sing N N 153 LYS CG CD sing N N 154 LYS CG HG2 sing N N 155 LYS CG HG3 sing N N 156 LYS CD CE sing N N 157 LYS CD HD2 sing N N 158 LYS CD HD3 sing N N 159 LYS CE NZ sing N N 160 LYS CE HE2 sing N N 161 LYS CE HE3 sing N N 162 LYS NZ HZ1 sing N N 163 LYS NZ HZ2 sing N N 164 LYS NZ HZ3 sing N N 165 LYS OXT HXT sing N N 166 MET N CA sing N N 167 MET N H sing N N 168 MET N H2 sing N N 169 MET CA C sing N N 170 MET CA CB sing N N 171 MET CA HA sing N N 172 MET C O doub N N 173 MET C OXT sing N N 174 MET CB CG sing N N 175 MET CB HB2 sing N N 176 MET CB HB3 sing N N 177 MET CG SD sing N N 178 MET CG HG2 sing N N 179 MET CG HG3 sing N N 180 MET SD CE sing N N 181 MET CE HE1 sing N N 182 MET CE HE2 sing N N 183 MET CE HE3 sing N N 184 MET OXT HXT sing N N 185 MPD C1 C2 sing N N 186 MPD C1 H11 sing N N 187 MPD C1 H12 sing N N 188 MPD C1 H13 sing N N 189 MPD C2 O2 sing N N 190 MPD C2 CM sing N N 191 MPD C2 C3 sing N N 192 MPD O2 HO2 sing N N 193 MPD CM HM1 sing N N 194 MPD CM HM2 sing N N 195 MPD CM HM3 sing N N 196 MPD C3 C4 sing N N 197 MPD C3 H31 sing N N 198 MPD C3 H32 sing N N 199 MPD C4 O4 sing N N 200 MPD C4 C5 sing N N 201 MPD C4 H4 sing N N 202 MPD O4 HO4 sing N N 203 MPD C5 H51 sing N N 204 MPD C5 H52 sing N N 205 MPD C5 H53 sing N N 206 MRD C1 C2 sing N N 207 MRD C1 H1C1 sing N N 208 MRD C1 H1C2 sing N N 209 MRD C1 H1C3 sing N N 210 MRD C2 O2 sing N N 211 MRD C2 CM sing N N 212 MRD C2 C3 sing N N 213 MRD O2 H2 sing N N 214 MRD CM HMC1 sing N N 215 MRD CM HMC2 sing N N 216 MRD CM HMC3 sing N N 217 MRD C3 C4 sing N N 218 MRD C3 H3C1 sing N N 219 MRD C3 H3C2 sing N N 220 MRD C4 O4 sing N N 221 MRD C4 C5 sing N N 222 MRD C4 H4 sing N N 223 MRD O4 HA sing N N 224 MRD C5 H5C1 sing N N 225 MRD C5 H5C2 sing N N 226 MRD C5 H5C3 sing N N 227 PRO N CA sing N N 228 PRO N CD sing N N 229 PRO N H sing N N 230 PRO CA C sing N N 231 PRO CA CB sing N N 232 PRO CA HA sing N N 233 PRO C O doub N N 234 PRO C OXT sing N N 235 PRO CB CG sing N N 236 PRO CB HB2 sing N N 237 PRO CB HB3 sing N N 238 PRO CG CD sing N N 239 PRO CG HG2 sing N N 240 PRO CG HG3 sing N N 241 PRO CD HD2 sing N N 242 PRO CD HD3 sing N N 243 PRO OXT HXT sing N N 244 SER N CA sing N N 245 SER N H sing N N 246 SER N H2 sing N N 247 SER CA C sing N N 248 SER CA CB sing N N 249 SER CA HA sing N N 250 SER C O doub N N 251 SER C OXT sing N N 252 SER CB OG sing N N 253 SER CB HB2 sing N N 254 SER CB HB3 sing N N 255 SER OG HG sing N N 256 SER OXT HXT sing N N 257 TRP N CA sing N N 258 TRP N H sing N N 259 TRP N H2 sing N N 260 TRP CA C sing N N 261 TRP CA CB sing N N 262 TRP CA HA sing N N 263 TRP C O doub N N 264 TRP C OXT sing N N 265 TRP CB CG sing N N 266 TRP CB HB2 sing N N 267 TRP CB HB3 sing N N 268 TRP CG CD1 doub Y N 269 TRP CG CD2 sing Y N 270 TRP CD1 NE1 sing Y N 271 TRP CD1 HD1 sing N N 272 TRP CD2 CE2 doub Y N 273 TRP CD2 CE3 sing Y N 274 TRP NE1 CE2 sing Y N 275 TRP NE1 HE1 sing N N 276 TRP CE2 CZ2 sing Y N 277 TRP CE3 CZ3 doub Y N 278 TRP CE3 HE3 sing N N 279 TRP CZ2 CH2 doub Y N 280 TRP CZ2 HZ2 sing N N 281 TRP CZ3 CH2 sing Y N 282 TRP CZ3 HZ3 sing N N 283 TRP CH2 HH2 sing N N 284 TRP OXT HXT sing N N 285 TYR N CA sing N N 286 TYR N H sing N N 287 TYR N H2 sing N N 288 TYR CA C sing N N 289 TYR CA CB sing N N 290 TYR CA HA sing N N 291 TYR C O doub N N 292 TYR C OXT sing N N 293 TYR CB CG sing N N 294 TYR CB HB2 sing N N 295 TYR CB HB3 sing N N 296 TYR CG CD1 doub Y N 297 TYR CG CD2 sing Y N 298 TYR CD1 CE1 sing Y N 299 TYR CD1 HD1 sing N N 300 TYR CD2 CE2 doub Y N 301 TYR CD2 HD2 sing N N 302 TYR CE1 CZ doub Y N 303 TYR CE1 HE1 sing N N 304 TYR CE2 CZ sing Y N 305 TYR CE2 HE2 sing N N 306 TYR CZ OH sing N N 307 TYR OH HH sing N N 308 TYR OXT HXT sing N N 309 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 1,2-ETHANEDIOL EDO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NA3 _pdbx_initial_refinement_model.details 'PDB ENTRY 1NA3' #