HEADER DNA BINDING PROTEIN 19-NOV-09 2WYQ TITLE THE CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE (UBL) DOMAIN OF HHR23A TITLE 2 (HUMAN HOMOLOGUE A OF RAD23) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN, RESIDUES 1-82; COMPND 5 SYNONYM: HHR23A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) KEYWDS DNA BINDING PROTEIN, DNA EXCISION REPAIR, PROTEASOMAL DEGRADATION, KEYWDS 2 POLYUBIQUITIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.W.CHEN REVDAT 4 20-DEC-23 2WYQ 1 REMARK REVDAT 3 22-DEC-10 2WYQ 1 JRNL REVDAT 2 17-NOV-10 2WYQ 1 SOURCE JRNL REVDAT 1 10-NOV-10 2WYQ 0 JRNL AUTH Y.W.CHEN,T.TAJIMA,S.AGRAWAL JRNL TITL THE CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE (UBL) DOMAIN OF JRNL TITL 2 HUMAN HOMOLOGUE A OF RAD23 (HHR23A) PROTEIN JRNL REF PROTEIN ENG.DES.SEL. V. 24 131 2011 JRNL REFN ISSN 1741-0126 JRNL PMID 21047872 JRNL DOI 10.1093/PROTEIN/GZQ084 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.W.CHEN,T.TAJIMA,M.REES,M.GARCIA-MAYA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 THE UBIQUITIN-LIKE (UBL) DOMAIN OF THE HUMAN HOMOLOGUE A OF REMARK 1 TITL 3 RAD23 (HHR23A) PROTEIN. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 930 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19724136 REMARK 1 DOI 10.1107/S1744309109031376 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.D.MUELLER,J.FEIGON REMARK 1 TITL STRUCTURAL DETERMINANTS FOR THE BINDING OF UBIQUITIN-LIKE REMARK 1 TITL 2 DOMAINS TO THE PROTEASOME. REMARK 1 REF EMBO J. V. 22 4634 2003 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 12970176 REMARK 1 DOI 10.1093/EMBOJ/CDG467 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.J.WALTERS,P.J.LECH,A.M.GOH,Q.WANG,P.M.HOWLEY REMARK 1 TITL DNA-REPAIR PROTEIN HHR23A ALTERS ITS PROTEIN STRUCTURE UPON REMARK 1 TITL 2 BINDING PROTEASOMAL SUBUNIT S5A. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 100 12694 2003 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 14557549 REMARK 1 DOI 10.1073/PNAS.1634989100 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.0970 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 603 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02600 REMARK 3 B22 (A**2) : 0.02600 REMARK 3 B33 (A**2) : -0.03900 REMARK 3 B12 (A**2) : 0.01300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 670 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 467 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 905 ; 2.288 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1158 ; 3.113 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 80 ; 6.351 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ;33.598 ;24.815 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 141 ;14.992 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 111 ; 0.276 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 688 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 120 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 115 ; 0.299 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 411 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 292 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 306 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.269 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 11 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.273 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 402 ; 2.576 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 158 ; 1.171 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 670 ; 3.553 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 268 ; 5.423 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 235 ; 7.410 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1137 ; 2.479 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 108 ;20.126 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1130 ; 5.566 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 6 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5199 23.3891 -1.2905 REMARK 3 T TENSOR REMARK 3 T11: 0.1916 T22: 0.2102 REMARK 3 T33: 0.1600 T12: 0.0160 REMARK 3 T13: -0.0033 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 21.5850 L22: 4.5680 REMARK 3 L33: 3.6019 L12: -0.2471 REMARK 3 L13: -1.2836 L23: 0.2537 REMARK 3 S TENSOR REMARK 3 S11: -0.2767 S12: 0.4617 S13: -0.8059 REMARK 3 S21: -0.3079 S22: 0.1370 S23: -0.7632 REMARK 3 S31: 0.5453 S32: 0.5931 S33: 0.1398 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0359 26.4450 -0.4474 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1756 REMARK 3 T33: 0.0789 T12: -0.0341 REMARK 3 T13: -0.0581 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 8.5558 L22: 4.5164 REMARK 3 L33: 5.4426 L12: 2.5024 REMARK 3 L13: 0.8007 L23: -0.4851 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.5414 S13: 0.2774 REMARK 3 S21: -0.0953 S22: -0.0265 S23: 0.2031 REMARK 3 S31: -0.3064 S32: -0.1063 S33: 0.0569 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9507 27.0401 -3.5507 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.2040 REMARK 3 T33: 0.0922 T12: 0.0061 REMARK 3 T13: -0.0156 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 11.9723 L22: 9.3458 REMARK 3 L33: 6.0546 L12: 2.8139 REMARK 3 L13: -0.5857 L23: 2.2542 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: 0.6605 S13: -0.7727 REMARK 3 S21: -0.6528 S22: 0.1076 S23: -0.5040 REMARK 3 S31: 0.6904 S32: 0.1207 S33: -0.2033 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4015 31.4022 4.7618 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.1905 REMARK 3 T33: 0.0702 T12: -0.0348 REMARK 3 T13: -0.0490 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 14.4422 L22: 7.4521 REMARK 3 L33: 10.6800 L12: -3.4529 REMARK 3 L13: -0.5546 L23: -2.5352 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: 0.2359 S13: 0.3831 REMARK 3 S21: -0.3383 S22: 0.0712 S23: -0.4164 REMARK 3 S31: -0.1018 S32: 0.7047 S33: -0.1512 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7619 35.4391 1.2442 REMARK 3 T TENSOR REMARK 3 T11: 0.0861 T22: 0.1557 REMARK 3 T33: 0.1003 T12: -0.0290 REMARK 3 T13: -0.0214 T23: 0.0640 REMARK 3 L TENSOR REMARK 3 L11: 4.8990 L22: 2.7246 REMARK 3 L33: 10.1088 L12: -1.1118 REMARK 3 L13: 2.7901 L23: -2.3280 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: 0.1866 S13: 0.3174 REMARK 3 S21: 0.0134 S22: 0.0657 S23: -0.1286 REMARK 3 S31: -0.2020 S32: 0.2383 S33: -0.0628 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1272 37.4093 -1.8452 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.1621 REMARK 3 T33: 0.1203 T12: -0.0284 REMARK 3 T13: -0.0463 T23: 0.0934 REMARK 3 L TENSOR REMARK 3 L11: 12.4497 L22: 14.0299 REMARK 3 L33: 13.6538 L12: -0.9178 REMARK 3 L13: -0.5987 L23: -2.8797 REMARK 3 S TENSOR REMARK 3 S11: 0.0841 S12: -0.0650 S13: 0.0916 REMARK 3 S21: -0.0394 S22: 0.0569 S23: 0.3904 REMARK 3 S31: -0.0841 S32: -0.2048 S33: -0.1410 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1263 31.9445 8.1802 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.1786 REMARK 3 T33: 0.0680 T12: -0.0297 REMARK 3 T13: -0.0426 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.2300 L22: 15.4271 REMARK 3 L33: 4.3448 L12: -0.1047 REMARK 3 L13: 0.0973 L23: -4.3029 REMARK 3 S TENSOR REMARK 3 S11: 0.1284 S12: 0.0469 S13: 0.1653 REMARK 3 S21: 0.3241 S22: -0.0116 S23: 0.0718 REMARK 3 S31: -0.1311 S32: -0.0252 S33: -0.1169 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5112 27.6365 11.7442 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1141 REMARK 3 T33: 0.0617 T12: 0.0149 REMARK 3 T13: -0.0666 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 4.8720 L22: 1.8004 REMARK 3 L33: 2.9205 L12: 1.1062 REMARK 3 L13: -0.9366 L23: -0.9007 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: 0.0763 S13: 0.0302 REMARK 3 S21: 0.0165 S22: 0.0104 S23: -0.0345 REMARK 3 S31: 0.1350 S32: 0.0744 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3683 20.2731 7.2559 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.1698 REMARK 3 T33: 0.1388 T12: -0.0219 REMARK 3 T13: -0.0296 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.4852 L22: 4.6666 REMARK 3 L33: 16.3395 L12: 3.9998 REMARK 3 L13: 4.6128 L23: 6.1768 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: 0.4733 S13: -0.6841 REMARK 3 S21: -0.1526 S22: -0.2321 S23: -0.2950 REMARK 3 S31: 0.8334 S32: 0.2640 S33: 0.1551 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7496 24.4174 4.5295 REMARK 3 T TENSOR REMARK 3 T11: 0.1366 T22: 0.2145 REMARK 3 T33: 0.0606 T12: -0.0496 REMARK 3 T13: -0.0349 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 7.5490 L22: 10.9245 REMARK 3 L33: 4.9107 L12: -1.9177 REMARK 3 L13: -0.6016 L23: 1.6748 REMARK 3 S TENSOR REMARK 3 S11: -0.0948 S12: 0.1001 S13: -0.1465 REMARK 3 S21: 0.3270 S22: 0.1116 S23: -0.0460 REMARK 3 S31: 0.3075 S32: -0.0749 S33: -0.0169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1290041766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 63.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 36.17 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 23.00 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BWF REMARK 200 REMARK 200 REMARK: THIS IS A COMBINED DATASET, OF 1.65A SYNCHROTRON DATA AND REMARK 200 OF 1.97A INHOUSE DATA. THE EXPERIMENTAL DETAILS INCLUDED HERE REMARK 200 ARE THOSE USED FOR THE SYNCHROTRON DATASET. THE DATA REDUCTION REMARK 200 STATISTICS ARE THOSE FOR THE COMBINED DATASET. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 2% PEG 400 AND 2.0 REMARK 280 M AMMONIUM SULFATE, AT ROOM TEMPERATURE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.31467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.15733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.73600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.57867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.89333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.31467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 21.15733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 10.57867 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 31.73600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.89333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 31.73600 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1079 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2029 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2106 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ILE A -1 REMARK 465 PRO A 0 REMARK 465 LYS A 78 REMARK 465 THR A 79 REMARK 465 LYS A 80 REMARK 465 ALA A 81 REMARK 465 GLY A 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 SD CE REMARK 470 ARG A 38 NE CZ NH1 NH2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ILE A 61 CG1 - CB - CG2 ANGL. DEV. = 19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2004 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1078 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1079 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IFY RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE INTERNAL UBA DOMAIN OF HHR23A REMARK 900 RELATED ID: 1TP4 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE XPC BINDING DOMAIN OF HHR23APROTEIN REMARK 900 RELATED ID: 1QZE RELATED DB: PDB REMARK 900 HHR23A PROTEIN STRUCTURE BASED ON RESIDUAL DIPOLAR COUPLINGDATA REMARK 900 RELATED ID: 1P9D RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF THE COMPLEX OF HHR23AUBIQUITIN-LIKE REMARK 900 DOMAIN AND THE C- TERMINAL UBIQUITIN-INTERACTING MOTIF OF REMARK 900 PROTEASOME SUBUNIT S5A REMARK 900 RELATED ID: 1DV0 RELATED DB: PDB REMARK 900 REFINED NMR SOLUTION STRUCTURE OF THE C- TERMINAL UBA DOMAIN OF THE REMARK 900 HUMAN HOMOLOGUE OF RAD23A (HHR23A) REMARK 900 RELATED ID: 1OQY RELATED DB: PDB REMARK 900 STRUCTURE OF THE DNA REPAIR PROTEIN HHR23A REMARK 900 RELATED ID: 1P98 RELATED DB: PDB REMARK 900 HIGH-RESOLUTION NMR STRUCTURE OF THE UBL- DOMAIN OF HHR23A REMARK 900 RELATED ID: 1F4I RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HHR23A UBA(2) MUTANT P333E,DEFICIENT IN REMARK 900 BINDING THE HIV- 1 ACCESSORY PROTEIN VPR REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL CLONING ARTIFACT GLY ILE PRO. DBREF 2WYQ A 1 82 UNP P54725 RD23A_HUMAN 1 82 SEQADV 2WYQ GLY A -2 UNP P54725 EXPRESSION TAG SEQADV 2WYQ ILE A -1 UNP P54725 EXPRESSION TAG SEQADV 2WYQ PRO A 0 UNP P54725 EXPRESSION TAG SEQRES 1 A 85 GLY ILE PRO MET ALA VAL THR ILE THR LEU LYS THR LEU SEQRES 2 A 85 GLN GLN GLN THR PHE LYS ILE ARG MET GLU PRO ASP GLU SEQRES 3 A 85 THR VAL LYS VAL LEU LYS GLU LYS ILE GLU ALA GLU LYS SEQRES 4 A 85 GLY ARG ASP ALA PHE PRO VAL ALA GLY GLN LYS LEU ILE SEQRES 5 A 85 TYR ALA GLY LYS ILE LEU SER ASP ASP VAL PRO ILE ARG SEQRES 6 A 85 ASP TYR ARG ILE ASP GLU LYS ASN PHE VAL VAL VAL MET SEQRES 7 A 85 VAL THR LYS THR LYS ALA GLY HET SO4 A1078 5 HET SO4 A1079 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *108(H2 O) HELIX 1 1 THR A 24 GLY A 37 1 14 HELIX 2 2 PRO A 42 ALA A 44 5 3 HELIX 3 3 ILE A 61 ARG A 65 5 5 SHEET 1 AA 5 THR A 14 MET A 19 0 SHEET 2 AA 5 VAL A 3 THR A 9 -1 O VAL A 3 N MET A 19 SHEET 3 AA 5 PHE A 71 VAL A 76 1 O VAL A 72 N LYS A 8 SHEET 4 AA 5 GLN A 46 TYR A 50 -1 O LYS A 47 N MET A 75 SHEET 5 AA 5 LYS A 53 ILE A 54 -1 O LYS A 53 N TYR A 50 SITE 1 AC1 4 THR A 14 ARG A 62 HOH A2107 HOH A2108 SITE 1 AC2 3 LYS A 53 ASP A 63 TYR A 64 CRYST1 78.434 78.434 63.472 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012750 0.007361 0.000000 0.00000 SCALE2 0.000000 0.014722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015755 0.00000