HEADER OXIDOREDUCTASE 20-NOV-09 2WYZ TITLE L38V SOD1 MUTANT COMPLEXED WITH UMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, F; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS OXIDOREDUCTASE, DISEASE MUTATION, AMYOTROPHIC LATERAL SCLEROSIS, KEYWDS 2 ANTIOXIDANT EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,R.W.STRANGE,S.S.HASNAIN REVDAT 3 20-DEC-23 2WYZ 1 REMARK LINK REVDAT 2 12-JUL-17 2WYZ 1 REVDAT 1 27-OCT-10 2WYZ 0 JRNL AUTH S.V.ANTONYUK,R.W.STRANGE,S.S.HASNAIN JRNL TITL STRUCTURAL DISCOVERY OF SMALL MOLECULE BINDING SITES IN JRNL TITL 2 CU-ZN HUMAN SUPEROXIDE DISMUTASE FAMILIAL AMYOTROPHIC JRNL TITL 3 LATERAL SCLEROSIS MUTANTS PROVIDES INSIGHTS FOR LEAD JRNL TITL 4 OPTIMIZATION. JRNL REF J.MED.CHEM. V. 53 1402 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20067275 JRNL DOI 10.1021/JM9017948 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0106 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 25327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.755 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2375 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1564 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3229 ; 1.485 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3865 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ;12.516 ; 5.122 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;41.582 ;25.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;14.156 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.780 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2719 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 429 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1523 ; 0.912 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 661 ; 0.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2438 ; 1.547 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 852 ; 2.188 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 780 ; 3.382 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2WYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1290041781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2C9V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM NACL, 3.0 M AMMONIUM SULPHATE, REMARK 280 100 MM TRIS PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.79450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 39 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN F, LEU 39 TO VAL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP F 90 OD1 ASP F 92 1.67 REMARK 500 O1 SO4 A 156 O HOH A 2186 1.76 REMARK 500 O4 SO4 F 156 O HOH F 2198 1.82 REMARK 500 NH2 ARG F 69 O HOH F 2099 1.86 REMARK 500 O1 SO4 F 156 O HOH F 2199 1.92 REMARK 500 ND2 ASN F 26 O HOH F 2047 2.06 REMARK 500 NZ LYS A 128 O HOH A 2150 2.09 REMARK 500 OE1 GLU F 78 O HOH F 2117 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2158 O HOH F 2180 1545 2.16 REMARK 500 O HOH A 2098 O HOH F 2161 2646 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F2006 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH F2024 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 154A ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 113.9 REMARK 620 3 HIS A 120 NE2 91.7 115.2 REMARK 620 4 SO4 A 156 O4 122.3 110.5 101.1 REMARK 620 5 HOH A2184 O 79.4 158.2 80.0 48.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 154 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 148.6 REMARK 620 3 HIS A 120 NE2 98.4 111.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 104.8 REMARK 620 3 HIS A 80 ND1 113.3 118.8 REMARK 620 4 ASP A 83 OD1 105.9 99.7 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU F 154 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 46 ND1 REMARK 620 2 HIS F 48 NE2 149.3 REMARK 620 3 HIS F 120 NE2 95.5 107.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 154A ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 46 ND1 REMARK 620 2 HIS F 48 NE2 119.3 REMARK 620 3 HIS F 120 NE2 96.1 117.0 REMARK 620 4 SO4 F 156 O2 119.1 104.6 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 63 ND1 REMARK 620 2 HIS F 71 ND1 103.8 REMARK 620 3 HIS F 80 ND1 112.8 118.1 REMARK 620 4 ASP F 83 OD1 105.9 101.1 113.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 154A REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 154A REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU F 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZ6 RELATED DB: PDB REMARK 900 G93A SOD1 MUTANT COMPLEXED WITH QUINAZOLINE. REMARK 900 RELATED ID: 1PTZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN CU, ZN SUPEROXIDE DISMUTASE,FAMILIAL REMARK 900 AMYOTROPHIC LATERAL SCLEROSIS (FALS) MUTANT H43R REMARK 900 RELATED ID: 1OEZ RELATED DB: PDB REMARK 900 ZN HIS46ARG MUTANT OF HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1AZV RELATED DB: PDB REMARK 900 FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN) REMARK 900 RELATED ID: 1HL4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF APO TYPE HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2VR6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.3 A RESOLUTION REMARK 900 RELATED ID: 1OZU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAMILIAL ALS MUTANT S134N OF HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE ( CUZNSOD) TO 1.3A RESOLUTION REMARK 900 RELATED ID: 2C9V RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2WZ5 RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH L-METHIONINE . REMARK 900 RELATED ID: 1PU0 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CU,ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1FUN RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH LYS 136 REPLACED BY GLU, CYS 6 REMARK 900 REPLACED BY ALA AND CYS 111 REPLACED BY SER (K136E, C6A, C111S) REMARK 900 RELATED ID: 1SOS RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA AND CYS 111 REMARK 900 REPLACED BY SER (C6A, C111S) REMARK 900 RELATED ID: 1N19 RELATED DB: PDB REMARK 900 STRUCTURE OF THE HSOD A4V MUTANT REMARK 900 RELATED ID: 1P1V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FALS-ASSOCIATED HUMAN COPPER-ZINCSUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) MUTANT D125H TO 1.4A REMARK 900 RELATED ID: 2WZ0 RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH ANILINE. REMARK 900 RELATED ID: 2WKO RELATED DB: PDB REMARK 900 STRUCTURE OF METAL LOADED PATHOGENIC SOD1 MUTANT G93A. REMARK 900 RELATED ID: 1L3N RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED DIMERIC COPPER ZINC SOD:THE REMARK 900 STRUCTURAL EFFECTS OF DIMERIZATION REMARK 900 RELATED ID: 1UXL RELATED DB: PDB REMARK 900 I113T MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 2AF2 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DISULFIDE REDUCED AND COPPER DEPLETEDHUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2VR8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.36 A RESOLUTION REMARK 900 RELATED ID: 1RK7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF APO CU,ZN SUPEROXIDE DISMUTASE: ROLEOF METAL REMARK 900 IONS IN PROTEIN FOLDING REMARK 900 RELATED ID: 2VR7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.58 A RESOLUTION REMARK 900 RELATED ID: 2C9S RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF ZN- ZN HUMAN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 2V0A RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION CRYSTAL STRUCTURE OF HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 4SOD RELATED DB: PDB REMARK 900 CU,ZN SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA AND REMARK 900 CYS 111 REPLACED BY SER (C6A,C111S) WITH AN 18-RESIDUE HEPARIN- REMARK 900 BINDING PEPTIDE FUSED TO THE C- TERMINUS (THEORETICAL MODEL) REMARK 900 RELATED ID: 1MFM RELATED DB: PDB REMARK 900 MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2WYT RELATED DB: PDB REMARK 900 1.0 A RESOLUTION STRUCTURE OF L38V SOD1 MUTANT REMARK 900 RELATED ID: 1DSW RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF A MONOMERIC, REDUCED FORM OFHUMAN COPPER, REMARK 900 ZINC SUPEROXIDE DISMUTASE BEARING THE SAMECHARGE AS THE NATIVE REMARK 900 PROTEIN REMARK 900 RELATED ID: 1KMG RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF MONOMERIC COPPER- FREE SUPEROXIDEDISMUTASE REMARK 900 RELATED ID: 1OZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-H46R FAMILIAL ALS MUTANT HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE ( CUZNSOD) TO 2.5A RESOLUTION REMARK 900 RELATED ID: 1N18 RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF HUMAN SUPEROXIDE DISMUTASE, C6A,C111S REMARK 900 RELATED ID: 1BA9 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED MONOMERIC SUPEROXIDE DISMUTASE, REMARK 900 NMR, 36 STRUCTURES REMARK 900 RELATED ID: 2C9U RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF AS- ISOLATED CU-ZN HUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1HL5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HOLO TYPE HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1SPD RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1UXM RELATED DB: PDB REMARK 900 A4V MUTANT OF HUMAN SOD1 DBREF 2WYZ A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 2WYZ F 1 153 UNP P00441 SODC_HUMAN 2 154 SEQADV 2WYZ VAL A 38 UNP P00441 LEU 39 ENGINEERED MUTATION SEQADV 2WYZ VAL F 38 UNP P00441 LEU 39 ENGINEERED MUTATION SEQRES 1 A 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY VAL THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CSO ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 F 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 F 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY VAL THR SEQRES 4 F 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 F 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 F 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 F 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 F 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 F 153 SER LEU SER GLY ASP HIS CSO ILE ILE GLY ARG THR LEU SEQRES 10 F 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 F 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 F 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN MODRES 2WYZ CSO A 111 CYS S-HYDROXYCYSTEINE MODRES 2WYZ CSO F 111 CYS S-HYDROXYCYSTEINE HET CSO A 111 7 HET CSO F 111 7 HET ZN A 154A 1 HET CU A 154 1 HET ZN A 155 1 HET SO4 A 156 5 HET U5P A 157 21 HET CU F 154 1 HET ZN F 154A 1 HET ZN F 155 1 HET SO4 F 156 5 HET SO4 F 157 5 HET SO4 F 158 5 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION HETNAM U5P URIDINE-5'-MONOPHOSPHATE FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 ZN 4(ZN 2+) FORMUL 4 CU 2(CU 2+) FORMUL 6 SO4 4(O4 S 2-) FORMUL 7 U5P C9 H13 N2 O9 P FORMUL 14 HOH *390(H2 O) HELIX 1 1 GLY A 56 GLY A 61 5 6 HELIX 2 2 ASN A 131 LYS A 136 5 6 HELIX 3 3 GLY F 56 GLY F 61 5 6 HELIX 4 4 SER F 107 HIS F 110 5 4 HELIX 5 5 GLU F 132 LYS F 136 5 5 SHEET 1 AA 5 ALA A 95 ASP A 101 0 SHEET 2 AA 5 VAL A 29 LYS A 36 -1 O VAL A 29 N ASP A 101 SHEET 3 AA 5 GLN A 15 GLN A 22 -1 O GLN A 15 N LYS A 36 SHEET 4 AA 5 THR A 2 LYS A 9 -1 O THR A 2 N GLN A 22 SHEET 5 AA 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 AB 4 ASP A 83 ALA A 89 0 SHEET 2 AB 4 GLY A 41 HIS A 48 -1 O GLY A 41 N ALA A 89 SHEET 3 AB 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AB 4 ARG A 143 VAL A 148 -1 N LEU A 144 O VAL A 119 SHEET 1 FA 5 ALA F 95 ASP F 101 0 SHEET 2 FA 5 VAL F 29 LYS F 36 -1 O VAL F 29 N ASP F 101 SHEET 3 FA 5 VAL F 14 GLU F 21 -1 O GLN F 15 N LYS F 36 SHEET 4 FA 5 LYS F 3 GLY F 10 -1 O ALA F 4 N PHE F 20 SHEET 5 FA 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 FB 4 ASP F 83 ALA F 89 0 SHEET 2 FB 4 GLY F 41 HIS F 48 -1 O GLY F 41 N ALA F 89 SHEET 3 FB 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 FB 4 ARG F 143 VAL F 148 -1 N LEU F 144 O VAL F 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.03 SSBOND 2 CYS F 57 CYS F 146 1555 1555 2.06 LINK C HIS A 110 N CSO A 111 1555 1555 1.35 LINK C CSO A 111 N ILE A 112 1555 1555 1.34 LINK C HIS F 110 N CSO F 111 1555 1555 1.33 LINK C CSO F 111 N ILE F 112 1555 1555 1.34 LINK ND1 HIS A 46 ZN B ZN A 154A 1555 1555 2.46 LINK ND1 HIS A 46 CU A CU A 154 1555 1555 2.01 LINK NE2 HIS A 48 ZN B ZN A 154A 1555 1555 2.15 LINK NE2 HIS A 48 CU A CU A 154 1555 1555 2.00 LINK ND1 HIS A 63 ZN ZN A 155 1555 1555 1.98 LINK ND1 HIS A 71 ZN ZN A 155 1555 1555 2.09 LINK ND1 HIS A 80 ZN ZN A 155 1555 1555 1.94 LINK OD1 ASP A 83 ZN ZN A 155 1555 1555 1.96 LINK NE2 HIS A 120 ZN B ZN A 154A 1555 1555 1.89 LINK NE2 HIS A 120 CU A CU A 154 1555 1555 2.14 LINK ZN B ZN A 154A O4 SO4 A 156 1555 1555 2.11 LINK ZN B ZN A 154A O HOH A2184 1555 1555 2.50 LINK ND1 HIS F 46 CU A CU F 154 1555 1555 2.00 LINK ND1 HIS F 46 ZN B ZN F 154A 1555 1555 2.35 LINK NE2 HIS F 48 CU A CU F 154 1555 1555 2.05 LINK NE2 HIS F 48 ZN B ZN F 154A 1555 1555 2.18 LINK ND1 HIS F 63 ZN ZN F 155 1555 1555 1.97 LINK ND1 HIS F 71 ZN ZN F 155 1555 1555 2.12 LINK ND1 HIS F 80 ZN ZN F 155 1555 1555 1.94 LINK OD1 ASP F 83 ZN ZN F 155 1555 1555 1.99 LINK NE2 HIS F 120 CU A CU F 154 1555 1555 2.26 LINK NE2 HIS F 120 ZN B ZN F 154A 1555 1555 1.88 LINK ZN B ZN F 154A O2 SO4 F 156 1555 1555 2.21 CISPEP 1 GLY F 12 PRO F 13 0 3.06 SITE 1 AC1 6 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 2 AC1 6 SO4 A 156 HOH A2184 SITE 1 AC2 5 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 2 AC2 5 SO4 A 156 SITE 1 AC3 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC4 13 HIS A 48 HIS A 63 HIS A 120 THR A 137 SITE 2 AC4 13 ARG A 143 CU A 154 ZN A 154A HOH A2182 SITE 3 AC4 13 HOH A2183 HOH A2184 HOH A2185 HOH A2186 SITE 4 AC4 13 SO4 F 158 SITE 1 AC5 12 GLY A 73 PRO A 74 LYS A 75 ASP A 76 SITE 2 AC5 12 LEU A 126 HOH A2104 HOH A2150 HOH A2187 SITE 3 AC5 12 HOH A2188 HOH A2189 HOH A2191 HOH A2192 SITE 1 AC6 5 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 2 AC6 5 SO4 F 156 SITE 1 AC7 5 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 2 AC7 5 SO4 F 156 SITE 1 AC8 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83 SITE 1 AC9 13 HIS F 48 HIS F 63 HIS F 120 THR F 137 SITE 2 AC9 13 ARG F 143 CU F 154 ZN F 154A SO4 F 157 SITE 3 AC9 13 HOH F2196 HOH F2197 HOH F2198 HOH F2199 SITE 4 AC9 13 HOH F2200 SITE 1 BC1 8 GLU F 133 THR F 137 ASN F 139 GLY F 141 SITE 2 BC1 8 SO4 F 156 HOH F2183 HOH F2200 HOH F2201 SITE 1 BC2 7 GLU A 133 THR A 137 ASN A 139 GLY A 141 SITE 2 BC2 7 SO4 A 156 HOH A2166 HOH A2183 CRYST1 38.717 67.589 50.777 90.00 105.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025828 0.000000 0.007396 0.00000 SCALE2 0.000000 0.014795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020486 0.00000