HEADER TRANSCRIPTION 02-FEB-10 2X4X TITLE MOLECULAR BASIS OF HISTONE H3K36ME3 RECOGNITION BY THE PWWP DOMAIN OF TITLE 2 BRPF1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEREGRIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: BRPF1 PWWP DOMAIN, RESIDUES 1076-1205; COMPND 5 SYNONYM: BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, PROTEIN COMPND 6 BR140; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3.2; COMPND 10 CHAIN: B, D, F, H; COMPND 11 FRAGMENT: RESIDUES 23-43; COMPND 12 SYNONYM: HUMAN H3 HISTONE, H3/M, H3/O; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: TRIMETHYLATION AT POSITION 36 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSETA; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, METAL-BINDING, ZINC-FINGER, CHROMATIN REGULATOR, KEYWDS 2 TRANSCRIPTION REGULATION, NUCLEOSOME EXPDTA X-RAY DIFFRACTION AUTHOR A.VEZZOLI,N.BONADIES,M.D.ALLEN,S.M.V.FREUND,C.M.SANTIVERI,B.KVINLAUG, AUTHOR 2 B.J.P.HUNTLY,B.GOTTGENS,M.BYCROFT REVDAT 4 24-JAN-18 2X4X 1 SOURCE REVDAT 3 15-JUN-11 2X4X 1 JRNL REMARK DBREF SEQADV REVDAT 2 28-APR-10 2X4X 1 JRNL REVDAT 1 21-APR-10 2X4X 0 JRNL AUTH A.VEZZOLI,N.BONADIES,M.D.ALLEN,S.M.V.FREUND,C.M.SANTIVERI, JRNL AUTH 2 B.KVINLAUG,B.J.P.HUNTLY,B.GOTTGENS,M.BYCROFT JRNL TITL MOLECULAR BASIS OF HISTONE H3K36ME3 RECOGNITION BY THE PWWP JRNL TITL 2 DOMAIN OF BRPF1. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 617 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20400950 JRNL DOI 10.1038/NSMB.1797 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 57745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0039 - 5.7402 0.95 3411 187 0.1873 0.1924 REMARK 3 2 5.7402 - 4.5594 0.98 3545 175 0.1714 0.1856 REMARK 3 3 4.5594 - 3.9840 0.97 3472 233 0.1590 0.1884 REMARK 3 4 3.9840 - 3.6201 0.97 3528 184 0.1703 0.2224 REMARK 3 5 3.6201 - 3.3609 0.97 3495 179 0.1735 0.2316 REMARK 3 6 3.3609 - 3.1628 0.97 3483 181 0.1867 0.2175 REMARK 3 7 3.1628 - 3.0045 0.97 3527 185 0.2057 0.2510 REMARK 3 8 3.0045 - 2.8738 0.96 3475 173 0.2043 0.2441 REMARK 3 9 2.8738 - 2.7632 0.95 3397 192 0.1951 0.2403 REMARK 3 10 2.7632 - 2.6679 0.95 3515 170 0.1988 0.2844 REMARK 3 11 2.6679 - 2.5845 0.96 3396 176 0.2117 0.2829 REMARK 3 12 2.5845 - 2.5107 0.95 3443 209 0.2166 0.2610 REMARK 3 13 2.5107 - 2.4446 0.95 3412 180 0.2101 0.2726 REMARK 3 14 2.4446 - 2.3850 0.95 3381 159 0.2110 0.2813 REMARK 3 15 2.3850 - 2.3307 0.94 3483 173 0.1994 0.2319 REMARK 3 16 2.3307 - 2.2812 0.94 3363 172 0.1836 0.2567 REMARK 3 17 2.2812 - 2.2355 0.94 3399 189 0.1925 0.2382 REMARK 3 18 2.2355 - 2.1934 0.94 3476 160 0.1970 0.3060 REMARK 3 19 2.1934 - 2.1542 0.94 3382 170 0.2019 0.2562 REMARK 3 20 2.1542 - 2.1177 0.93 3338 181 0.2084 0.2477 REMARK 3 21 2.1177 - 2.0835 0.94 3464 197 0.2253 0.2800 REMARK 3 22 2.0835 - 2.0515 0.93 3311 164 0.2340 0.2683 REMARK 3 23 2.0515 - 2.0213 0.93 3330 157 0.2302 0.2571 REMARK 3 24 2.0213 - 1.9928 0.93 3464 161 0.2446 0.3099 REMARK 3 25 1.9928 - 1.9659 0.93 3329 194 0.2469 0.2960 REMARK 3 26 1.9659 - 1.9404 0.93 3298 196 0.2447 0.3046 REMARK 3 27 1.9404 - 1.9161 0.92 3281 189 0.2509 0.2982 REMARK 3 28 1.9161 - 1.8930 0.92 3355 192 0.2587 0.2848 REMARK 3 29 1.8930 - 1.8710 0.92 3322 168 0.2619 0.3221 REMARK 3 30 1.8710 - 1.8500 0.91 3326 147 0.2737 0.2823 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 49.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.38730 REMARK 3 B22 (A**2) : -3.83230 REMARK 3 B33 (A**2) : -0.55500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.85870 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4573 REMARK 3 ANGLE : 1.259 6197 REMARK 3 CHIRALITY : 0.094 653 REMARK 3 PLANARITY : 0.006 792 REMARK 3 DIHEDRAL : 16.575 1783 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGIONS WERE MODELED REMARK 3 STEREOCHEMICALLY REMARK 4 REMARK 4 2X4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 44.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M LITHIUM SULPHATE, REMARK 280 0.1M TRIS (PH 8.5) 0.01M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.47050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1074 REMARK 465 GLY A 1075 REMARK 465 SER A 1076 REMARK 465 GLU A 1077 REMARK 465 ASP A 1078 REMARK 465 GLU A 1079 REMARK 465 THR B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ALA B 25 REMARK 465 ARG B 26 REMARK 465 LYS B 27 REMARK 465 ARG B 42 REMARK 465 GLY C 1074 REMARK 465 GLY C 1075 REMARK 465 SER C 1076 REMARK 465 GLU C 1077 REMARK 465 ASP C 1078 REMARK 465 GLU C 1079 REMARK 465 GLU C 1205 REMARK 465 THR D 22 REMARK 465 LYS D 23 REMARK 465 ALA D 24 REMARK 465 ALA D 25 REMARK 465 ARG D 26 REMARK 465 LYS D 27 REMARK 465 ARG D 40 REMARK 465 TYR D 41 REMARK 465 ARG D 42 REMARK 465 GLY E 1074 REMARK 465 GLY E 1075 REMARK 465 SER E 1076 REMARK 465 GLU E 1077 REMARK 465 ASP E 1078 REMARK 465 GLU E 1079 REMARK 465 THR F 22 REMARK 465 LYS F 23 REMARK 465 ALA F 24 REMARK 465 ALA F 25 REMARK 465 ARG F 26 REMARK 465 LYS F 27 REMARK 465 HIS F 39 REMARK 465 ARG F 40 REMARK 465 TYR F 41 REMARK 465 ARG F 42 REMARK 465 GLY G 1074 REMARK 465 GLY G 1075 REMARK 465 SER G 1076 REMARK 465 GLU G 1077 REMARK 465 ASP G 1078 REMARK 465 GLU G 1079 REMARK 465 ASP G 1080 REMARK 465 SER G 1081 REMARK 465 GLY G 1204 REMARK 465 GLU G 1205 REMARK 465 THR H 22 REMARK 465 LYS H 23 REMARK 465 ALA H 24 REMARK 465 ALA H 25 REMARK 465 ARG H 26 REMARK 465 LYS H 27 REMARK 465 ARG H 40 REMARK 465 TYR H 41 REMARK 465 ARG H 42 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 SO4 A 2206 O HOH A 2147 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1148 30.85 -87.89 REMARK 500 ARG A1152 71.09 56.27 REMARK 500 ARG C1152 71.14 55.49 REMARK 500 PHE E1148 34.26 -85.98 REMARK 500 ARG E1152 66.50 61.30 REMARK 500 LEU G1086 5.44 80.79 REMARK 500 PHE G1148 31.74 -91.64 REMARK 500 ARG G1152 71.11 58.53 REMARK 500 PRO H 38 150.87 -49.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2007 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH E2004 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH E2005 DISTANCE = 5.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D9E RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE BROMODOMAIN OF PEREGRIN REMARK 900 RELATED ID: 2X35 RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HISTONE H3K36ME3 RECOGNITION BY THE PWWP DOMAIN REMARK 900 OF BRPF1. REMARK 900 RELATED ID: 2X4Y RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HISTONE H3K36ME3 RECOGNITION BY THE PWWP DOMAIN REMARK 900 OF BRPF1. REMARK 900 RELATED ID: 2X4W RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HISTONE H3K36ME3 RECOGNITION BY THE PWWP DOMAIN REMARK 900 OF BRPF1. REMARK 999 REMARK 999 SEQUENCE REMARK 999 LYSINE 36 IS TRIMETHYLATED DBREF 2X4X A 1076 1205 UNP P55201 BRPF1_HUMAN 1076 1205 DBREF 2X4X B 22 42 UNP Q71DI3 H32_HUMAN 23 43 DBREF 2X4X C 1076 1205 UNP P55201 BRPF1_HUMAN 1076 1205 DBREF 2X4X D 22 42 UNP Q71DI3 H32_HUMAN 23 43 DBREF 2X4X E 1076 1205 UNP P55201 BRPF1_HUMAN 1076 1205 DBREF 2X4X F 22 42 UNP Q71DI3 H32_HUMAN 23 43 DBREF 2X4X G 1076 1205 UNP P55201 BRPF1_HUMAN 1076 1205 DBREF 2X4X H 22 42 UNP Q71DI3 H32_HUMAN 23 43 SEQADV 2X4X GLY A 1074 UNP P55201 EXPRESSION TAG SEQADV 2X4X GLY A 1075 UNP P55201 EXPRESSION TAG SEQADV 2X4X GLY C 1074 UNP P55201 EXPRESSION TAG SEQADV 2X4X GLY C 1075 UNP P55201 EXPRESSION TAG SEQADV 2X4X GLY E 1074 UNP P55201 EXPRESSION TAG SEQADV 2X4X GLY E 1075 UNP P55201 EXPRESSION TAG SEQADV 2X4X GLY G 1074 UNP P55201 EXPRESSION TAG SEQADV 2X4X GLY G 1075 UNP P55201 EXPRESSION TAG SEQRES 1 A 132 GLY GLY SER GLU ASP GLU ASP SER PRO LEU ASP ALA LEU SEQRES 2 A 132 ASP LEU VAL TRP ALA LYS CYS ARG GLY TYR PRO SER TYR SEQRES 3 A 132 PRO ALA LEU ILE ILE ASP PRO LYS MET PRO ARG GLU GLY SEQRES 4 A 132 MET PHE HIS HIS GLY VAL PRO ILE PRO VAL PRO PRO LEU SEQRES 5 A 132 GLU VAL LEU LYS LEU GLY GLU GLN MET THR GLN GLU ALA SEQRES 6 A 132 ARG GLU HIS LEU TYR LEU VAL LEU PHE PHE ASP ASN LYS SEQRES 7 A 132 ARG THR TRP GLN TRP LEU PRO ARG THR LYS LEU VAL PRO SEQRES 8 A 132 LEU GLY VAL ASN GLN ASP LEU ASP LYS GLU LYS MET LEU SEQRES 9 A 132 GLU GLY ARG LYS SER ASN ILE ARG LYS SER VAL GLN ILE SEQRES 10 A 132 ALA TYR HIS ARG ALA LEU GLN HIS ARG SER LYS VAL GLN SEQRES 11 A 132 GLY GLU SEQRES 1 B 21 THR LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY SEQRES 2 B 21 VAL M3L LYS PRO HIS ARG TYR ARG SEQRES 1 C 132 GLY GLY SER GLU ASP GLU ASP SER PRO LEU ASP ALA LEU SEQRES 2 C 132 ASP LEU VAL TRP ALA LYS CYS ARG GLY TYR PRO SER TYR SEQRES 3 C 132 PRO ALA LEU ILE ILE ASP PRO LYS MET PRO ARG GLU GLY SEQRES 4 C 132 MET PHE HIS HIS GLY VAL PRO ILE PRO VAL PRO PRO LEU SEQRES 5 C 132 GLU VAL LEU LYS LEU GLY GLU GLN MET THR GLN GLU ALA SEQRES 6 C 132 ARG GLU HIS LEU TYR LEU VAL LEU PHE PHE ASP ASN LYS SEQRES 7 C 132 ARG THR TRP GLN TRP LEU PRO ARG THR LYS LEU VAL PRO SEQRES 8 C 132 LEU GLY VAL ASN GLN ASP LEU ASP LYS GLU LYS MET LEU SEQRES 9 C 132 GLU GLY ARG LYS SER ASN ILE ARG LYS SER VAL GLN ILE SEQRES 10 C 132 ALA TYR HIS ARG ALA LEU GLN HIS ARG SER LYS VAL GLN SEQRES 11 C 132 GLY GLU SEQRES 1 D 21 THR LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY SEQRES 2 D 21 VAL M3L LYS PRO HIS ARG TYR ARG SEQRES 1 E 132 GLY GLY SER GLU ASP GLU ASP SER PRO LEU ASP ALA LEU SEQRES 2 E 132 ASP LEU VAL TRP ALA LYS CYS ARG GLY TYR PRO SER TYR SEQRES 3 E 132 PRO ALA LEU ILE ILE ASP PRO LYS MET PRO ARG GLU GLY SEQRES 4 E 132 MET PHE HIS HIS GLY VAL PRO ILE PRO VAL PRO PRO LEU SEQRES 5 E 132 GLU VAL LEU LYS LEU GLY GLU GLN MET THR GLN GLU ALA SEQRES 6 E 132 ARG GLU HIS LEU TYR LEU VAL LEU PHE PHE ASP ASN LYS SEQRES 7 E 132 ARG THR TRP GLN TRP LEU PRO ARG THR LYS LEU VAL PRO SEQRES 8 E 132 LEU GLY VAL ASN GLN ASP LEU ASP LYS GLU LYS MET LEU SEQRES 9 E 132 GLU GLY ARG LYS SER ASN ILE ARG LYS SER VAL GLN ILE SEQRES 10 E 132 ALA TYR HIS ARG ALA LEU GLN HIS ARG SER LYS VAL GLN SEQRES 11 E 132 GLY GLU SEQRES 1 F 21 THR LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY SEQRES 2 F 21 VAL M3L LYS PRO HIS ARG TYR ARG SEQRES 1 G 132 GLY GLY SER GLU ASP GLU ASP SER PRO LEU ASP ALA LEU SEQRES 2 G 132 ASP LEU VAL TRP ALA LYS CYS ARG GLY TYR PRO SER TYR SEQRES 3 G 132 PRO ALA LEU ILE ILE ASP PRO LYS MET PRO ARG GLU GLY SEQRES 4 G 132 MET PHE HIS HIS GLY VAL PRO ILE PRO VAL PRO PRO LEU SEQRES 5 G 132 GLU VAL LEU LYS LEU GLY GLU GLN MET THR GLN GLU ALA SEQRES 6 G 132 ARG GLU HIS LEU TYR LEU VAL LEU PHE PHE ASP ASN LYS SEQRES 7 G 132 ARG THR TRP GLN TRP LEU PRO ARG THR LYS LEU VAL PRO SEQRES 8 G 132 LEU GLY VAL ASN GLN ASP LEU ASP LYS GLU LYS MET LEU SEQRES 9 G 132 GLU GLY ARG LYS SER ASN ILE ARG LYS SER VAL GLN ILE SEQRES 10 G 132 ALA TYR HIS ARG ALA LEU GLN HIS ARG SER LYS VAL GLN SEQRES 11 G 132 GLY GLU SEQRES 1 H 21 THR LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY SEQRES 2 H 21 VAL M3L LYS PRO HIS ARG TYR ARG MODRES 2X4X M3L B 36 LYS N-TRIMETHYLLYSINE MODRES 2X4X M3L D 36 LYS N-TRIMETHYLLYSINE MODRES 2X4X M3L F 36 LYS N-TRIMETHYLLYSINE MODRES 2X4X M3L H 36 LYS N-TRIMETHYLLYSINE HET M3L B 36 12 HET M3L D 36 12 HET M3L F 36 12 HET M3L H 36 12 HET SO4 A2206 5 HETNAM M3L N-TRIMETHYLLYSINE HETNAM SO4 SULFATE ION FORMUL 2 M3L 4(C9 H21 N2 O2 1+) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *574(H2 O) HELIX 1 1 PRO A 1124 ARG A 1139 1 16 HELIX 2 2 ASN A 1168 LEU A 1177 1 10 HELIX 3 3 LYS A 1181 GLN A 1203 1 23 HELIX 4 4 PRO C 1124 ARG C 1139 1 16 HELIX 5 5 ASN C 1168 LEU C 1177 1 10 HELIX 6 6 LYS C 1181 GLY C 1204 1 24 HELIX 7 7 PRO E 1124 ARG E 1139 1 16 HELIX 8 8 PRO E 1158 THR E 1160 5 3 HELIX 9 9 ASN E 1168 LEU E 1177 1 10 HELIX 10 10 LYS E 1181 GLY E 1204 1 24 HELIX 11 11 PRO G 1124 ARG G 1139 1 16 HELIX 12 12 ASN G 1168 LEU G 1177 1 10 HELIX 13 13 LYS G 1181 GLN G 1203 1 23 SHEET 1 AA 5 TRP A1154 PRO A1158 0 SHEET 2 AA 5 LEU A1142 PHE A1147 -1 O TYR A1143 N LEU A1157 SHEET 3 AA 5 TYR A1099 ILE A1104 -1 O LEU A1102 N LEU A1146 SHEET 4 AA 5 LEU A1088 ALA A1091 -1 O VAL A1089 N ALA A1101 SHEET 5 AA 5 LEU A1162 PRO A1164 -1 O VAL A1163 N TRP A1090 SHEET 1 AB 2 MET A1113 HIS A1115 0 SHEET 2 AB 2 VAL A1118 ILE A1120 -1 O VAL A1118 N HIS A1115 SHEET 1 CA 5 TRP C1154 PRO C1158 0 SHEET 2 CA 5 LEU C1142 PHE C1147 -1 O TYR C1143 N LEU C1157 SHEET 3 CA 5 TYR C1099 ILE C1104 -1 O LEU C1102 N LEU C1146 SHEET 4 CA 5 LEU C1088 ALA C1091 -1 O VAL C1089 N ALA C1101 SHEET 5 CA 5 LEU C1162 PRO C1164 -1 O VAL C1163 N TRP C1090 SHEET 1 CB 2 MET C1113 HIS C1115 0 SHEET 2 CB 2 VAL C1118 ILE C1120 -1 O VAL C1118 N HIS C1115 SHEET 1 EA 5 TRP E1154 LEU E1157 0 SHEET 2 EA 5 TYR E1143 PHE E1147 -1 O TYR E1143 N LEU E1157 SHEET 3 EA 5 TYR E1099 ILE E1104 -1 O LEU E1102 N LEU E1146 SHEET 4 EA 5 LEU E1088 ALA E1091 -1 O VAL E1089 N ALA E1101 SHEET 5 EA 5 LEU E1162 PRO E1164 -1 O VAL E1163 N TRP E1090 SHEET 1 EB 2 MET E1113 HIS E1115 0 SHEET 2 EB 2 VAL E1118 ILE E1120 -1 O VAL E1118 N HIS E1115 SHEET 1 GA 5 TRP G1154 PRO G1158 0 SHEET 2 GA 5 LEU G1142 PHE G1147 -1 O TYR G1143 N LEU G1157 SHEET 3 GA 5 TYR G1099 ILE G1104 -1 O LEU G1102 N LEU G1146 SHEET 4 GA 5 LEU G1088 ALA G1091 -1 O VAL G1089 N ALA G1101 SHEET 5 GA 5 LEU G1162 PRO G1164 -1 O VAL G1163 N TRP G1090 SHEET 1 GB 2 PHE G1114 HIS G1115 0 SHEET 2 GB 2 VAL G1118 PRO G1119 -1 O VAL G1118 N HIS G1115 LINK C VAL B 35 N M3L B 36 1555 1555 1.33 LINK C M3L B 36 N LYS B 37 1555 1555 1.33 LINK C VAL D 35 N M3L D 36 1555 1555 1.33 LINK C M3L D 36 N LYS D 37 1555 1555 1.33 LINK C VAL F 35 N M3L F 36 1555 1555 1.33 LINK C M3L F 36 N LYS F 37 1555 1555 1.33 LINK C VAL H 35 N M3L H 36 1555 1555 1.33 LINK C M3L H 36 N LYS H 37 1555 1555 1.33 SITE 1 AC1 6 ARG A1110 LEU A1125 HOH A2147 HOH A2148 SITE 2 AC1 6 HOH A2149 HOH A2150 CRYST1 38.437 102.941 88.654 90.00 100.33 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026017 0.000000 0.004742 0.00000 SCALE2 0.000000 0.009714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011466 0.00000