HEADER IMMUNE SYSTEM 18-FEB-10 2X6M TITLE STRUCTURE OF A SINGLE DOMAIN CAMELID ANTIBODY FRAGMENT IN COMPLEX WITH TITLE 2 A C-TERMINAL PEPTIDE OF ALPHA-SYNUCLEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN VARIABLE DOMAIN FROM DROMEDARY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: ENGINEERED FROM IMMUNISED DROMEDARY; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALPHA-SYNUCLEIN PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: C-TERMINAL FRAGMENT OF ALPHA-SYNUCLEIN, RESIDUES 132-140; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: DROMEDARY; SOURCE 4 ORGANISM_TAXID: 9838; SOURCE 5 TISSUE: BLOOD; SOURCE 6 CELL: LYMPHOCYTE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: WK6; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHEN6; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS IMMUNE SYSTEM, PARKINSON'S DISEASE, ALZHEIMER DISEASE AMYLOID, KEYWDS 2 NANOBODY, AFFINITY TAG EXPDTA X-RAY DIFFRACTION AUTHOR E.DEGENST,T.GUILLIAMS,J.WELLENS,E.M.O'DAY,C.A.WAUDBY,S.MEEHAN, AUTHOR 2 M.DUMOULIN,S.-T.D.HSU,N.CREMADES,K.H.G.VERSCHUEREN,E.PARDON,L.WYNS, AUTHOR 3 J.STEYAERT,J.CHRISTODOULOU,C.M.DOBSON REVDAT 5 20-DEC-23 2X6M 1 REMARK REVDAT 4 24-JUL-19 2X6M 1 REMARK REVDAT 3 29-MAR-17 2X6M 1 REMARK REVDAT 2 24-AUG-11 2X6M 1 AUTHOR JRNL REMARK VERSN REVDAT 1 23-JUN-10 2X6M 0 JRNL AUTH E.J.DE GENST,T.GUILLIAMS,J.WELLENS,E.M.O'DAY,C.A.WAUDBY, JRNL AUTH 2 S.MEEHAN,M.DUMOULIN,S.-T.D.HSU,N.CREMADES,K.H.G.VERSCHUEREN, JRNL AUTH 3 E.PARDON,L.WYNS,J.STEYAERT,J.CHRISTODOULOU,C.M.DOBSON JRNL TITL STRUCTURE AND PROPERTIES OF A COMPLEX OF ALPHA-SYNUCLEIN AND JRNL TITL 2 A SINGLE-DOMAIN CAMELID ANTIBODY. JRNL REF J.MOL.BIOL. V. 402 326 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20620148 JRNL DOI 10.1016/J.JMB.2010.07.001 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1032 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.4580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1060 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1446 ; 1.693 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 7.031 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;33.154 ;23.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 166 ;12.931 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;24.031 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 146 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 843 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 671 ; 1.531 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1068 ; 2.481 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 389 ; 3.561 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 369 ; 5.539 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0459 14.9507 9.2345 REMARK 3 T TENSOR REMARK 3 T11: 0.0291 T22: 0.0268 REMARK 3 T33: 0.0243 T12: -0.0045 REMARK 3 T13: -0.0079 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.7485 L22: 0.6799 REMARK 3 L33: 0.6967 L12: -0.2639 REMARK 3 L13: 0.4541 L23: -0.2991 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0252 S13: 0.0236 REMARK 3 S21: 0.0086 S22: -0.0289 S23: 0.0236 REMARK 3 S31: 0.0076 S32: -0.0119 S33: 0.0395 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6588 15.2196 3.5248 REMARK 3 T TENSOR REMARK 3 T11: 0.0004 T22: 0.0872 REMARK 3 T33: 0.0791 T12: -0.0326 REMARK 3 T13: -0.0121 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 17.2343 L22: -1.2996 REMARK 3 L33: 0.7132 L12: -0.8123 REMARK 3 L13: 3.8938 L23: -0.5427 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: -0.1768 S13: -0.2508 REMARK 3 S21: 0.0598 S22: 0.0364 S23: 0.0454 REMARK 3 S31: 0.0898 S32: -0.1431 S33: 0.0429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.U VALUES RESIDUAL ONLY. ATOM RECORD CONTAINS SUM OF REMARK 3 TLS AND RESIDUAL B FACTORS.ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. REMARK 4 REMARK 4 2X6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8150 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15482 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HCV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG6000, 100 MM HEPES PH 7.5, 100 REMARK 280 MM LICL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.08500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.08500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.43500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.08500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.56000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.43500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.08500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.56000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -0.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2020 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2078 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 132 REMARK 465 TYR B 133 REMARK 465 GLN B 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2158 O HOH A 2161 1.47 REMARK 500 O HOH A 2088 O HOH A 2089 1.80 REMARK 500 O HOH A 2185 O HOH B 2007 1.97 REMARK 500 O HOH A 2002 O HOH A 2003 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2073 O HOH A 2161 8555 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 48 -55.23 -122.85 REMARK 500 ASP A 67 -12.38 74.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XQ8 RELATED DB: PDB REMARK 900 HUMAN MICELLE-BOUND ALPHA-SYNUCLEIN DBREF 2X6M A 2 127 PDB 2X6M 2X6M 2 127 DBREF 2X6M B 132 140 UNP P37840 SYUA_HUMAN 132 140 SEQRES 1 A 126 GLY GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN ALA SEQRES 2 A 126 GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY ILE SEQRES 3 A 126 ASP SER SER SER TYR CYS MET GLY TRP PHE ARG GLN ARG SEQRES 4 A 126 PRO GLY LYS GLU ARG GLU GLY VAL ALA ARG ILE ASN GLY SEQRES 5 A 126 LEU GLY GLY VAL LYS THR ALA TYR ALA ASP SER VAL LYS SEQRES 6 A 126 ASP ARG PHE THR ILE SER ARG ASP ASN ALA GLU ASN THR SEQRES 7 A 126 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 126 ALA ILE TYR TYR CYS ALA ALA LYS PHE SER PRO GLY TYR SEQRES 9 A 126 CYS GLY GLY SER TRP SER ASN PHE GLY TYR TRP GLY GLN SEQRES 10 A 126 GLY THR GLN VAL THR VAL SER SER HIS SEQRES 1 B 9 GLY TYR GLN ASP TYR GLU PRO GLU ALA FORMUL 3 HOH *208(H2 O) HELIX 1 1 ASP A 28 TYR A 32 5 5 HELIX 2 2 ASP A 63 LYS A 66 5 4 HELIX 3 3 ASN A 75 GLU A 77 5 3 HELIX 4 4 LYS A 88 THR A 92 5 5 SHEET 1 AA 4 GLN A 3 SER A 7 0 SHEET 2 AA 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA 4 THR A 79 MET A 84 -1 O VAL A 80 N CYS A 22 SHEET 4 AA 4 PHE A 69 ASP A 74 -1 O THR A 70 N GLN A 83 SHEET 1 AB 4 GLY A 10 GLN A 13 0 SHEET 2 AB 4 THR A 120 SER A 125 1 O GLN A 121 N GLY A 10 SHEET 3 AB 4 ALA A 93 LYS A 100 -1 O ALA A 93 N VAL A 122 SHEET 4 AB 4 PHE A 113 TRP A 116 -1 N GLY A 114 O ALA A 99 SHEET 1 AC 6 GLY A 10 GLN A 13 0 SHEET 2 AC 6 THR A 120 SER A 125 1 O GLN A 121 N GLY A 10 SHEET 3 AC 6 ALA A 93 LYS A 100 -1 O ALA A 93 N VAL A 122 SHEET 4 AC 6 MET A 34 GLN A 39 -1 O GLY A 35 N ALA A 98 SHEET 5 AC 6 GLU A 46 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AC 6 THR A 59 TYR A 61 -1 O ALA A 60 N ARG A 50 SHEET 1 AD 2 PHE A 113 TRP A 116 0 SHEET 2 AD 2 ALA A 93 LYS A 100 -1 O ALA A 99 N GLY A 114 SSBOND 1 CYS A 22 CYS A 97 1555 1555 1.93 SSBOND 2 CYS A 33 CYS A 106 1555 1555 2.09 CRYST1 60.170 63.120 62.870 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016620 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015906 0.00000