data_2XDB # _entry.id 2XDB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2XDB pdb_00002xdb 10.2210/pdb2xdb/pdb PDBE EBI-43786 ? ? WWPDB D_1290043786 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XD0 unspecified 'A PROCESSED NON-CODING RNA REGULATES A BACTERIAL ANTIVIRAL SYSTEM' PDB 2XDD unspecified 'A PROCESSED NON-CODING RNA REGULATES A BACTERIAL ANTIVIRAL SYSTEM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XDB _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-04-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Blower, T.R.' 1 'Pei, X.Y.' 2 'Short, F.L.' 3 'Fineran, P.C.' 4 'Humphreys, D.P.' 5 'Luisi, B.F.' 6 'Salmond, G.P.C.' 7 # _citation.id primary _citation.title 'A Processed Noncoding RNA Regulates an Altruistic Bacterial Antiviral System.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 185 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21240270 _citation.pdbx_database_id_DOI 10.1038/NSMB.1981 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Blower, T.R.' 1 ? primary 'Pei, X.Y.' 2 ? primary 'Short, F.L.' 3 ? primary 'Fineran, P.C.' 4 ? primary 'Humphreys, D.P.' 5 ? primary 'Luisi, B.F.' 6 ? primary 'Salmond, G.P.C.' 7 ? # _cell.entry_id 2XDB _cell.length_a 183.650 _cell.length_b 183.650 _cell.length_c 183.650 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XDB _symmetry.space_group_name_H-M 'I 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man TOXN 19726.537 1 3.1.27.3 ? ? ? 2 polymer man TOXI 12822.509 1 ? ? 'BACTERIA ANTITOX, RESIDUES 1775-1814' ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 non-polymer syn 'COBALT (II) ION' 58.933 6 ? ? ? ? 5 water nat water 18.015 100 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MKFYTISSKYIEYLKEFDDKVPNSEDPTYQNPKAFIGIVLEIQGHKYLAPLTSPKKWHNNVKESSLSCFKLHENGVPENQ LGLINLKFMIPIIEAEVSLLDLGNMPNTPYKRMLYKQLQFIRANSDKIASKSDTLRNLVLQGKMQGTCNFSLLEEKYRDF GKEAEDTEEGE ; ;MKFYTISSKYIEYLKEFDDKVPNSEDPTYQNPKAFIGIVLEIQGHKYLAPLTSPKKWHNNVKESSLSCFKLHENGVPENQ LGLINLKFMIPIIEAEVSLLDLGNMPNTPYKRMLYKQLQFIRANSDKIASKSDTLRNLVLQGKMQGTCNFSLLEEKYRDF GKEAEDTEEGE ; A ? 2 polyribonucleotide no yes 'AUUCAGGUGAUUUGCUACCUUUAAGUGCAGCUAGA(A23)AUUC' AUUCAGGUGAUUUGCUACCUUUAAGUGCAGCUAGAAAUUC G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 PHE n 1 4 TYR n 1 5 THR n 1 6 ILE n 1 7 SER n 1 8 SER n 1 9 LYS n 1 10 TYR n 1 11 ILE n 1 12 GLU n 1 13 TYR n 1 14 LEU n 1 15 LYS n 1 16 GLU n 1 17 PHE n 1 18 ASP n 1 19 ASP n 1 20 LYS n 1 21 VAL n 1 22 PRO n 1 23 ASN n 1 24 SER n 1 25 GLU n 1 26 ASP n 1 27 PRO n 1 28 THR n 1 29 TYR n 1 30 GLN n 1 31 ASN n 1 32 PRO n 1 33 LYS n 1 34 ALA n 1 35 PHE n 1 36 ILE n 1 37 GLY n 1 38 ILE n 1 39 VAL n 1 40 LEU n 1 41 GLU n 1 42 ILE n 1 43 GLN n 1 44 GLY n 1 45 HIS n 1 46 LYS n 1 47 TYR n 1 48 LEU n 1 49 ALA n 1 50 PRO n 1 51 LEU n 1 52 THR n 1 53 SER n 1 54 PRO n 1 55 LYS n 1 56 LYS n 1 57 TRP n 1 58 HIS n 1 59 ASN n 1 60 ASN n 1 61 VAL n 1 62 LYS n 1 63 GLU n 1 64 SER n 1 65 SER n 1 66 LEU n 1 67 SER n 1 68 CYS n 1 69 PHE n 1 70 LYS n 1 71 LEU n 1 72 HIS n 1 73 GLU n 1 74 ASN n 1 75 GLY n 1 76 VAL n 1 77 PRO n 1 78 GLU n 1 79 ASN n 1 80 GLN n 1 81 LEU n 1 82 GLY n 1 83 LEU n 1 84 ILE n 1 85 ASN n 1 86 LEU n 1 87 LYS n 1 88 PHE n 1 89 MET n 1 90 ILE n 1 91 PRO n 1 92 ILE n 1 93 ILE n 1 94 GLU n 1 95 ALA n 1 96 GLU n 1 97 VAL n 1 98 SER n 1 99 LEU n 1 100 LEU n 1 101 ASP n 1 102 LEU n 1 103 GLY n 1 104 ASN n 1 105 MET n 1 106 PRO n 1 107 ASN n 1 108 THR n 1 109 PRO n 1 110 TYR n 1 111 LYS n 1 112 ARG n 1 113 MET n 1 114 LEU n 1 115 TYR n 1 116 LYS n 1 117 GLN n 1 118 LEU n 1 119 GLN n 1 120 PHE n 1 121 ILE n 1 122 ARG n 1 123 ALA n 1 124 ASN n 1 125 SER n 1 126 ASP n 1 127 LYS n 1 128 ILE n 1 129 ALA n 1 130 SER n 1 131 LYS n 1 132 SER n 1 133 ASP n 1 134 THR n 1 135 LEU n 1 136 ARG n 1 137 ASN n 1 138 LEU n 1 139 VAL n 1 140 LEU n 1 141 GLN n 1 142 GLY n 1 143 LYS n 1 144 MET n 1 145 GLN n 1 146 GLY n 1 147 THR n 1 148 CYS n 1 149 ASN n 1 150 PHE n 1 151 SER n 1 152 LEU n 1 153 LEU n 1 154 GLU n 1 155 GLU n 1 156 LYS n 1 157 TYR n 1 158 ARG n 1 159 ASP n 1 160 PHE n 1 161 GLY n 1 162 LYS n 1 163 GLU n 1 164 ALA n 1 165 GLU n 1 166 ASP n 1 167 THR n 1 168 GLU n 1 169 GLU n 1 170 GLY n 1 171 GLU n 2 1 A n 2 2 U n 2 3 U n 2 4 C n 2 5 A n 2 6 G n 2 7 G n 2 8 U n 2 9 G n 2 10 A n 2 11 U n 2 12 U n 2 13 U n 2 14 G n 2 15 C n 2 16 U n 2 17 A n 2 18 C n 2 19 C n 2 20 U n 2 21 U n 2 22 U n 2 23 A n 2 24 A n 2 25 G n 2 26 U n 2 27 G n 2 28 C n 2 29 A n 2 30 G n 2 31 C n 2 32 U n 2 33 A n 2 34 G n 2 35 A n 2 36 A23 n 2 37 A n 2 38 U n 2 39 U n 2 40 C n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? ? ? 'SCRI 1039' ? ? ? ? 'PECTOBACTERIUM ATROSEPTICUM' 29471 ? ? BAA-673 ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ER2566 ? ? ? ? ? ? ? PLASMID ? ? ? PTYB1 ? 'ENVIRONMENTAL ISOLATED FROM SCOTLAND, U.K' 2 1 sample ? ? ? ? ? ? ? 'ECA SCRI 1039' ? ? ? ? 'PECTOBACTERIUM ATROSEPTICUM' 29471 ? ER2566 BAA-673 ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? PLASMID ? ? ? PACYC184 ? 'ENVIRONMENTAL ISOLATED FROM SCOTLAND, U.K' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP B8X8Z0_ERWCT 1 ? ? B8X8Z0 ? 2 GB 218533675 2 ? ? FJ176937 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2XDB A 1 ? 171 ? B8X8Z0 1 ? 171 ? 1 171 2 2 2XDB G 1 ? 40 ? FJ176937 1775 ? 1814 ? -3 36 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XDB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_percent_sol 0.55 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.01M COCL2, 0.1M MES PH6.5, 1.8M (NH4)2SO4' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-07-08 _diffrn_detector.details 'SINGLE SILICON (111) MONOCHROMATOR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9702 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength 0.9702 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XDB _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 75.000 _reflns.d_resolution_high 2.550 _reflns.number_obs 18604 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.15000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.9000 _reflns.B_iso_Wilson_estimate 62.05 _reflns.pdbx_redundancy 20.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.55 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.78000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.700 _reflns_shell.pdbx_redundancy 20.70 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XDB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 32638 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.520 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.91 _refine.ls_d_res_high 2.55 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.178 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.212 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 1630 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 73.90 _refine.aniso_B[1][1] 0.00000 _refine.aniso_B[2][2] 0.00000 _refine.aniso_B[3][3] 0.00000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.38 _refine.solvent_model_param_bsol 75.43 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2XDD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.470 _refine.pdbx_overall_phase_error 22.560 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1316 _refine_hist.pdbx_number_atoms_nucleic_acid 764 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 2206 _refine_hist.d_res_high 2.55 _refine_hist.d_res_low 45.91 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 2214 'X-RAY DIFFRACTION' ? f_angle_d 2.563 ? ? 3161 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.486 ? ? 964 'X-RAY DIFFRACTION' ? f_chiral_restr 0.080 ? ? 376 'X-RAY DIFFRACTION' ? f_plane_restr 0.009 ? ? 267 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.5502 2.6252 2612 0.3263 100.00 0.3871 . . 137 . . 'X-RAY DIFFRACTION' . 2.6252 2.7100 2553 0.2921 100.00 0.3224 . . 138 . . 'X-RAY DIFFRACTION' . 2.7100 2.8068 2582 0.2639 100.00 0.3326 . . 124 . . 'X-RAY DIFFRACTION' . 2.8068 2.9192 2615 0.2497 100.00 0.3234 . . 125 . . 'X-RAY DIFFRACTION' . 2.9192 3.0520 2568 0.2113 100.00 0.2747 . . 150 . . 'X-RAY DIFFRACTION' . 3.0520 3.2129 2597 0.1765 100.00 0.2056 . . 105 . . 'X-RAY DIFFRACTION' . 3.2129 3.4141 2624 0.1634 100.00 0.2116 . . 117 . . 'X-RAY DIFFRACTION' . 3.4141 3.6776 2566 0.1495 100.00 0.1890 . . 143 . . 'X-RAY DIFFRACTION' . 3.6776 4.0475 2596 0.1267 100.00 0.1572 . . 106 . . 'X-RAY DIFFRACTION' . 4.0475 4.6327 2575 0.1086 100.00 0.1552 . . 159 . . 'X-RAY DIFFRACTION' . 4.6327 5.8349 2549 0.1217 100.00 0.1412 . . 159 . . 'X-RAY DIFFRACTION' . 5.8349 45.9200 2561 0.1751 99.00 0.2101 . . 167 . . # _struct.entry_id 2XDB _struct.title 'A processed non-coding RNA regulates a bacterial antiviral system' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XDB _struct_keywords.pdbx_keywords TOXIN/RNA _struct_keywords.text 'TOXIN-RNA COMPLEX, ABORTIVE INFECTION, PHAGE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 5 ? N N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? ASP A 18 ? SER A 7 ASP A 18 1 ? 12 HELX_P HELX_P2 2 LYS A 55 ? VAL A 61 ? LYS A 55 VAL A 61 5 ? 7 HELX_P HELX_P3 3 LEU A 86 ? MET A 89 ? LEU A 86 MET A 89 5 ? 4 HELX_P HELX_P4 4 ILE A 93 ? ALA A 95 ? ILE A 93 ALA A 95 5 ? 3 HELX_P HELX_P5 5 ASP A 101 ? MET A 105 ? ASP A 101 MET A 105 5 ? 5 HELX_P HELX_P6 6 THR A 108 ? ASN A 124 ? THR A 108 ASN A 124 1 ? 17 HELX_P HELX_P7 7 ASN A 124 ? GLN A 141 ? ASN A 124 GLN A 141 1 ? 18 HELX_P HELX_P8 8 ASN A 149 ? TYR A 157 ? ASN A 149 TYR A 157 1 ? 9 HELX_P HELX_P9 9 ARG A 158 ? PHE A 160 ? ARG A 158 PHE A 160 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B G 6 N7 ? ? ? 1_555 K CO . CO ? ? G G 2 G CO 1035 1_555 ? ? ? ? ? ? ? 2.589 ? ? metalc2 metalc ? ? B U 22 O2 ? ? ? 1_555 J CO . CO ? ? G U 18 G CO 1034 1_555 ? ? ? ? ? ? ? 2.472 ? ? hydrog1 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 20 N3 ? ? G A 1 G U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 20 O4 ? ? G A 1 G U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 19 N3 ? ? G G 2 G C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 19 O2 ? ? G G 2 G C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 19 N4 ? ? G G 2 G C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 18 N3 ? ? G G 3 G C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 18 O2 ? ? G G 3 G C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 18 N4 ? ? G G 3 G C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 7 N2 ? ? ? 1_555 B A 24 N3 ? ? G G 3 G A 20 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog10 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 17 N1 ? ? G U 4 G A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 17 N6 ? ? G U 4 G A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 29 N1 ? ? G U 9 G A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 29 N6 ? ? G U 9 G A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 28 N3 ? ? G G 10 G C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 14 N2 ? ? ? 1_555 B C 28 O2 ? ? G G 10 G C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 14 O6 ? ? ? 1_555 B C 28 N4 ? ? G G 10 G C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 27 N1 ? ? G C 11 G G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 27 O6 ? ? G C 11 G G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 27 N2 ? ? G C 11 G G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B U 16 O4 ? ? ? 1_555 B G 25 N2 ? ? G U 12 G G 21 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog21 hydrog ? ? B U 16 N3 ? ? ? 1_555 B U 26 O4 ? ? G U 12 G U 22 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog22 hydrog ? ? B U 16 O2 ? ? ? 1_555 B U 26 N3 ? ? G U 12 G U 22 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 6 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel AC 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 69 ? GLU A 73 ? PHE A 69 GLU A 73 AA 2 VAL A 76 ? ILE A 84 ? VAL A 76 ILE A 84 AA 3 HIS A 45 ? THR A 52 ? HIS A 45 THR A 52 AA 4 ILE A 90 ? PRO A 91 ? ILE A 90 PRO A 91 AB 1 PHE A 69 ? GLU A 73 ? PHE A 69 GLU A 73 AB 2 VAL A 76 ? ILE A 84 ? VAL A 76 ILE A 84 AB 3 HIS A 45 ? THR A 52 ? HIS A 45 THR A 52 AB 4 PHE A 35 ? ILE A 42 ? PHE A 35 ILE A 42 AB 5 PHE A 3 ? ILE A 6 ? PHE A 3 ILE A 6 AB 6 VAL A 97 ? LEU A 99 ? VAL A 97 LEU A 99 AC 1 ILE A 90 ? PRO A 91 ? ILE A 90 PRO A 91 AC 2 HIS A 45 ? THR A 52 ? HIS A 45 THR A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 O GLU A 73 ? O GLU A 73 N VAL A 76 ? N VAL A 76 AA 2 3 N LEU A 83 ? N LEU A 83 O THR A 52 ? O THR A 52 AA 3 4 N LEU A 48 ? N LEU A 48 O ILE A 90 ? O ILE A 90 AB 1 2 O GLU A 73 ? O GLU A 73 N VAL A 76 ? N VAL A 76 AB 2 3 N LEU A 83 ? N LEU A 83 O THR A 52 ? O THR A 52 AB 3 4 O ALA A 49 ? O ALA A 49 N ILE A 36 ? N ILE A 36 AB 4 5 N PHE A 35 ? N PHE A 35 O TYR A 4 ? O TYR A 4 AB 5 6 N THR A 5 ? N THR A 5 O SER A 98 ? O SER A 98 AC 1 2 N ILE A 90 ? N ILE A 90 O LEU A 48 ? O LEU A 48 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 1163 ? 3 'BINDING SITE FOR RESIDUE SO4 A 1163' AC2 Software A SO4 1164 ? 3 'BINDING SITE FOR RESIDUE SO4 A 1164' AC3 Software A SO4 1165 ? 3 'BINDING SITE FOR RESIDUE SO4 A 1165' AC4 Software A CO 1166 ? 2 'BINDING SITE FOR RESIDUE CO A 1166' AC5 Software A CO 1167 ? 5 'BINDING SITE FOR RESIDUE CO A 1167' AC6 Software G SO4 1032 ? 2 'BINDING SITE FOR RESIDUE SO4 G 1032' AC7 Software G CO 1033 ? 3 'BINDING SITE FOR RESIDUE CO G 1033' AC8 Software G CO 1034 ? 2 'BINDING SITE FOR RESIDUE CO G 1034' AC9 Software G CO 1035 ? 1 'BINDING SITE FOR RESIDUE CO G 1035' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LYS A 46 ? LYS A 46 . ? 18_545 ? 2 AC1 3 GLU A 94 ? GLU A 94 . ? 1_555 ? 3 AC1 3 ARG A 158 ? ARG A 158 . ? 1_555 ? 4 AC2 3 MET A 1 ? MET A 1 . ? 1_555 ? 5 AC2 3 LYS A 2 ? LYS A 2 . ? 1_555 ? 6 AC2 3 HOH M . ? HOH A 2056 . ? 1_555 ? 7 AC3 3 ILE A 42 ? ILE A 42 . ? 1_555 ? 8 AC3 3 GLN A 43 ? GLN A 43 . ? 1_555 ? 9 AC3 3 HOH M . ? HOH A 2022 . ? 1_555 ? 10 AC4 2 HIS A 72 ? HIS A 72 . ? 1_555 ? 11 AC4 2 GLY A 75 ? GLY A 75 . ? 1_555 ? 12 AC5 5 GLU A 73 ? GLU A 73 . ? 1_555 ? 13 AC5 5 ASN A 74 ? ASN A 74 . ? 1_555 ? 14 AC5 5 LYS A 116 ? LYS A 116 . ? 1_555 ? 15 AC5 5 GLN A 119 ? GLN A 119 . ? 1_555 ? 16 AC5 5 HOH M . ? HOH A 2039 . ? 1_555 ? 17 AC6 2 G B 30 ? G G 26 . ? 1_555 ? 18 AC6 2 C B 31 ? C G 27 . ? 1_555 ? 19 AC7 3 A B 17 ? A G 13 . ? 1_555 ? 20 AC7 3 C B 18 ? C G 14 . ? 1_555 ? 21 AC7 3 U B 26 ? U G 22 . ? 1_555 ? 22 AC8 2 U B 20 ? U G 16 . ? 1_555 ? 23 AC8 2 U B 22 ? U G 18 . ? 1_555 ? 24 AC9 1 G B 6 ? G G 2 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XDB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XDB _atom_sites.fract_transf_matrix[1][1] 0.005445 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005445 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005445 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 MET 113 113 113 MET MET A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 GLN 119 119 119 GLN GLN A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 MET 144 144 144 MET MET A . n A 1 145 GLN 145 145 145 GLN GLN A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 CYS 148 148 148 CYS CYS A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 ARG 158 158 158 ARG ARG A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 GLU 163 163 ? ? ? A . n A 1 164 ALA 164 164 ? ? ? A . n A 1 165 GLU 165 165 ? ? ? A . n A 1 166 ASP 166 166 ? ? ? A . n A 1 167 THR 167 167 ? ? ? A . n A 1 168 GLU 168 168 ? ? ? A . n A 1 169 GLU 169 169 ? ? ? A . n A 1 170 GLY 170 170 ? ? ? A . n A 1 171 GLU 171 171 ? ? ? A . n B 2 1 A 1 -3 -3 A A G . n B 2 2 U 2 -2 -2 U U G . n B 2 3 U 3 -1 -1 U U G . n B 2 4 C 4 0 0 C C G . n B 2 5 A 5 1 1 A A G . n B 2 6 G 6 2 2 G G G . n B 2 7 G 7 3 3 G G G . n B 2 8 U 8 4 4 U U G . n B 2 9 G 9 5 5 G G G . n B 2 10 A 10 6 6 A A G . n B 2 11 U 11 7 7 U U G . n B 2 12 U 12 8 8 U U G . n B 2 13 U 13 9 9 U U G . n B 2 14 G 14 10 10 G G G . n B 2 15 C 15 11 11 C C G . n B 2 16 U 16 12 12 U U G . n B 2 17 A 17 13 13 A A G . n B 2 18 C 18 14 14 C C G . n B 2 19 C 19 15 15 C C G . n B 2 20 U 20 16 16 U U G . n B 2 21 U 21 17 17 U U G . n B 2 22 U 22 18 18 U U G . n B 2 23 A 23 19 19 A A G . n B 2 24 A 24 20 20 A A G . n B 2 25 G 25 21 21 G G G . n B 2 26 U 26 22 22 U U G . n B 2 27 G 27 23 23 G G G . n B 2 28 C 28 24 24 C C G . n B 2 29 A 29 25 25 A A G . n B 2 30 G 30 26 26 G G G . n B 2 31 C 31 27 27 C C G . n B 2 32 U 32 28 28 U U G . n B 2 33 A 33 29 29 A A G . n B 2 34 G 34 30 30 G G G . n B 2 35 A 35 31 31 A A G . n B 2 36 A23 36 32 32 A23 A23 G . n B 2 37 A 37 33 ? ? ? G . n B 2 38 U 38 34 ? ? ? G . n B 2 39 U 39 35 ? ? ? G . n B 2 40 C 40 36 ? ? ? G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 1163 1163 SO4 SO4 A . D 3 SO4 1 1164 1164 SO4 SO4 A . E 3 SO4 1 1165 1165 SO4 SO4 A . F 4 CO 1 1166 1166 CO CO A . G 4 CO 1 1167 1167 CO CO A . H 3 SO4 1 1032 1032 SO4 SO4 G . I 4 CO 1 1033 1033 CO CO G . J 4 CO 1 1034 1034 CO CO G . K 4 CO 1 1035 1035 CO CO G . L 4 CO 1 1036 1036 CO CO G . M 5 HOH 1 2001 2001 HOH HOH A . M 5 HOH 2 2002 2002 HOH HOH A . M 5 HOH 3 2003 2003 HOH HOH A . M 5 HOH 4 2004 2004 HOH HOH A . M 5 HOH 5 2005 2005 HOH HOH A . M 5 HOH 6 2006 2006 HOH HOH A . M 5 HOH 7 2007 2007 HOH HOH A . M 5 HOH 8 2008 2008 HOH HOH A . M 5 HOH 9 2009 2009 HOH HOH A . M 5 HOH 10 2010 2010 HOH HOH A . M 5 HOH 11 2011 2011 HOH HOH A . M 5 HOH 12 2012 2012 HOH HOH A . M 5 HOH 13 2013 2013 HOH HOH A . M 5 HOH 14 2014 2014 HOH HOH A . M 5 HOH 15 2015 2015 HOH HOH A . M 5 HOH 16 2016 2016 HOH HOH A . M 5 HOH 17 2017 2017 HOH HOH A . M 5 HOH 18 2018 2018 HOH HOH A . M 5 HOH 19 2019 2019 HOH HOH A . M 5 HOH 20 2020 2020 HOH HOH A . M 5 HOH 21 2021 2021 HOH HOH A . M 5 HOH 22 2022 2022 HOH HOH A . M 5 HOH 23 2023 2023 HOH HOH A . M 5 HOH 24 2024 2024 HOH HOH A . M 5 HOH 25 2025 2025 HOH HOH A . M 5 HOH 26 2026 2026 HOH HOH A . M 5 HOH 27 2027 2027 HOH HOH A . M 5 HOH 28 2028 2028 HOH HOH A . M 5 HOH 29 2029 2029 HOH HOH A . M 5 HOH 30 2030 2030 HOH HOH A . M 5 HOH 31 2031 2031 HOH HOH A . M 5 HOH 32 2032 2032 HOH HOH A . M 5 HOH 33 2033 2033 HOH HOH A . M 5 HOH 34 2034 2034 HOH HOH A . M 5 HOH 35 2035 2035 HOH HOH A . M 5 HOH 36 2036 2036 HOH HOH A . M 5 HOH 37 2037 2037 HOH HOH A . M 5 HOH 38 2038 2038 HOH HOH A . M 5 HOH 39 2039 2039 HOH HOH A . M 5 HOH 40 2040 2040 HOH HOH A . M 5 HOH 41 2041 2041 HOH HOH A . M 5 HOH 42 2042 2042 HOH HOH A . M 5 HOH 43 2043 2043 HOH HOH A . M 5 HOH 44 2044 2044 HOH HOH A . M 5 HOH 45 2045 2045 HOH HOH A . M 5 HOH 46 2046 2046 HOH HOH A . M 5 HOH 47 2047 2047 HOH HOH A . M 5 HOH 48 2048 2048 HOH HOH A . M 5 HOH 49 2049 2049 HOH HOH A . M 5 HOH 50 2050 2050 HOH HOH A . M 5 HOH 51 2051 2051 HOH HOH A . M 5 HOH 52 2052 2052 HOH HOH A . M 5 HOH 53 2053 2053 HOH HOH A . M 5 HOH 54 2054 2054 HOH HOH A . M 5 HOH 55 2055 2055 HOH HOH A . M 5 HOH 56 2056 2056 HOH HOH A . N 5 HOH 1 2001 2001 HOH HOH G . N 5 HOH 2 2002 2002 HOH HOH G . N 5 HOH 3 2003 2003 HOH HOH G . N 5 HOH 4 2004 2004 HOH HOH G . N 5 HOH 5 2005 2005 HOH HOH G . N 5 HOH 6 2006 2006 HOH HOH G . N 5 HOH 7 2007 2007 HOH HOH G . N 5 HOH 8 2008 2008 HOH HOH G . N 5 HOH 9 2009 2009 HOH HOH G . N 5 HOH 10 2010 2010 HOH HOH G . N 5 HOH 11 2011 2011 HOH HOH G . N 5 HOH 12 2012 2012 HOH HOH G . N 5 HOH 13 2013 2013 HOH HOH G . N 5 HOH 14 2014 2014 HOH HOH G . N 5 HOH 15 2015 2015 HOH HOH G . N 5 HOH 16 2016 2016 HOH HOH G . N 5 HOH 17 2017 2017 HOH HOH G . N 5 HOH 18 2018 2018 HOH HOH G . N 5 HOH 19 2019 2019 HOH HOH G . N 5 HOH 20 2020 2020 HOH HOH G . N 5 HOH 21 2021 2021 HOH HOH G . N 5 HOH 22 2022 2022 HOH HOH G . N 5 HOH 23 2023 2023 HOH HOH G . N 5 HOH 24 2024 2024 HOH HOH G . N 5 HOH 25 2025 2025 HOH HOH G . N 5 HOH 26 2026 2026 HOH HOH G . N 5 HOH 27 2027 2027 HOH HOH G . N 5 HOH 28 2028 2028 HOH HOH G . N 5 HOH 29 2029 2029 HOH HOH G . N 5 HOH 30 2030 2030 HOH HOH G . N 5 HOH 31 2031 2031 HOH HOH G . N 5 HOH 32 2032 2032 HOH HOH G . N 5 HOH 33 2033 2033 HOH HOH G . N 5 HOH 34 2034 2034 HOH HOH G . N 5 HOH 35 2035 2035 HOH HOH G . N 5 HOH 36 2036 2036 HOH HOH G . N 5 HOH 37 2037 2037 HOH HOH G . N 5 HOH 38 2038 2038 HOH HOH G . N 5 HOH 39 2039 2039 HOH HOH G . N 5 HOH 40 2040 2040 HOH HOH G . N 5 HOH 41 2041 2041 HOH HOH G . N 5 HOH 42 2042 2042 HOH HOH G . N 5 HOH 43 2043 2043 HOH HOH G . N 5 HOH 44 2044 2044 HOH HOH G . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id A23 _pdbx_struct_mod_residue.label_seq_id 36 _pdbx_struct_mod_residue.auth_asym_id G _pdbx_struct_mod_residue.auth_comp_id A23 _pdbx_struct_mod_residue.auth_seq_id 32 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3530 ? 1 MORE -120.8 ? 1 'SSA (A^2)' 14130 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2023 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id M _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-12 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_conn.pdbx_dist_value' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 6.8017 -13.0046 31.0309 0.3050 0.2666 0.3294 -0.1004 -0.0125 0.1170 0.5144 0.3774 2.1788 -0.1561 -0.6091 0.2612 -0.2048 -0.0118 -0.0948 -0.0515 0.0305 0.1664 0.1931 -0.1152 0.1174 'X-RAY DIFFRACTION' 2 ? refined -10.8993 6.6001 18.5708 0.4012 0.3908 0.5392 0.0258 -0.2647 0.0802 0.8937 1.4894 0.9618 -0.2890 -0.2667 -0.9725 0.0654 -0.0900 -0.3553 -0.0533 0.0892 0.1920 0.1088 -0.2183 -0.1740 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN G' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2XDB _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;A23: RNA IS CLEAVED BY TOXN (CHAIN A IN THE STRUCTURE) AT A-32, AND FORMING 2'3'-CYCLOPHOSPHATE-A. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" G A 31 ? ? "C3'" G A 31 ? ? 1.636 1.427 0.209 0.012 N 2 1 "O3'" G A 31 ? ? P G A23 32 ? ? 1.226 1.607 -0.381 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" G U 18 ? ? "C1'" G U 18 ? ? N1 G U 18 ? ? 114.31 108.50 5.81 0.70 N 2 1 "O3'" G A 31 ? ? P G A23 32 ? ? OP1 G A23 32 ? ? 139.67 110.50 29.17 1.10 Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 38 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 81.46 _pdbx_validate_torsion.psi 84.07 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 G _pdbx_validate_polymer_linkage.auth_comp_id_1 A _pdbx_validate_polymer_linkage.auth_seq_id_1 31 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 G _pdbx_validate_polymer_linkage.auth_comp_id_2 A23 _pdbx_validate_polymer_linkage.auth_seq_id_2 32 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.23 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id G _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2008 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.01 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 163 ? A GLU 163 2 1 Y 1 A ALA 164 ? A ALA 164 3 1 Y 1 A GLU 165 ? A GLU 165 4 1 Y 1 A ASP 166 ? A ASP 166 5 1 Y 1 A THR 167 ? A THR 167 6 1 Y 1 A GLU 168 ? A GLU 168 7 1 Y 1 A GLU 169 ? A GLU 169 8 1 Y 1 A GLY 170 ? A GLY 170 9 1 Y 1 A GLU 171 ? A GLU 171 10 1 Y 1 G A 33 ? B A 37 11 1 Y 1 G U 34 ? B U 38 12 1 Y 1 G U 35 ? B U 39 13 1 Y 1 G C 36 ? B C 40 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 ALA N N N N 77 ALA CA C N S 78 ALA C C N N 79 ALA O O N N 80 ALA CB C N N 81 ALA OXT O N N 82 ALA H H N N 83 ALA H2 H N N 84 ALA HA H N N 85 ALA HB1 H N N 86 ALA HB2 H N N 87 ALA HB3 H N N 88 ALA HXT H N N 89 ARG N N N N 90 ARG CA C N S 91 ARG C C N N 92 ARG O O N N 93 ARG CB C N N 94 ARG CG C N N 95 ARG CD C N N 96 ARG NE N N N 97 ARG CZ C N N 98 ARG NH1 N N N 99 ARG NH2 N N N 100 ARG OXT O N N 101 ARG H H N N 102 ARG H2 H N N 103 ARG HA H N N 104 ARG HB2 H N N 105 ARG HB3 H N N 106 ARG HG2 H N N 107 ARG HG3 H N N 108 ARG HD2 H N N 109 ARG HD3 H N N 110 ARG HE H N N 111 ARG HH11 H N N 112 ARG HH12 H N N 113 ARG HH21 H N N 114 ARG HH22 H N N 115 ARG HXT H N N 116 ASN N N N N 117 ASN CA C N S 118 ASN C C N N 119 ASN O O N N 120 ASN CB C N N 121 ASN CG C N N 122 ASN OD1 O N N 123 ASN ND2 N N N 124 ASN OXT O N N 125 ASN H H N N 126 ASN H2 H N N 127 ASN HA H N N 128 ASN HB2 H N N 129 ASN HB3 H N N 130 ASN HD21 H N N 131 ASN HD22 H N N 132 ASN HXT H N N 133 ASP N N N N 134 ASP CA C N S 135 ASP C C N N 136 ASP O O N N 137 ASP CB C N N 138 ASP CG C N N 139 ASP OD1 O N N 140 ASP OD2 O N N 141 ASP OXT O N N 142 ASP H H N N 143 ASP H2 H N N 144 ASP HA H N N 145 ASP HB2 H N N 146 ASP HB3 H N N 147 ASP HD2 H N N 148 ASP HXT H N N 149 C OP3 O N N 150 C P P N N 151 C OP1 O N N 152 C OP2 O N N 153 C "O5'" O N N 154 C "C5'" C N N 155 C "C4'" C N R 156 C "O4'" O N N 157 C "C3'" C N S 158 C "O3'" O N N 159 C "C2'" C N R 160 C "O2'" O N N 161 C "C1'" C N R 162 C N1 N N N 163 C C2 C N N 164 C O2 O N N 165 C N3 N N N 166 C C4 C N N 167 C N4 N N N 168 C C5 C N N 169 C C6 C N N 170 C HOP3 H N N 171 C HOP2 H N N 172 C "H5'" H N N 173 C "H5''" H N N 174 C "H4'" H N N 175 C "H3'" H N N 176 C "HO3'" H N N 177 C "H2'" H N N 178 C "HO2'" H N N 179 C "H1'" H N N 180 C H41 H N N 181 C H42 H N N 182 C H5 H N N 183 C H6 H N N 184 CO CO CO N N 185 CYS N N N N 186 CYS CA C N R 187 CYS C C N N 188 CYS O O N N 189 CYS CB C N N 190 CYS SG S N N 191 CYS OXT O N N 192 CYS H H N N 193 CYS H2 H N N 194 CYS HA H N N 195 CYS HB2 H N N 196 CYS HB3 H N N 197 CYS HG H N N 198 CYS HXT H N N 199 G OP3 O N N 200 G P P N N 201 G OP1 O N N 202 G OP2 O N N 203 G "O5'" O N N 204 G "C5'" C N N 205 G "C4'" C N R 206 G "O4'" O N N 207 G "C3'" C N S 208 G "O3'" O N N 209 G "C2'" C N R 210 G "O2'" O N N 211 G "C1'" C N R 212 G N9 N Y N 213 G C8 C Y N 214 G N7 N Y N 215 G C5 C Y N 216 G C6 C N N 217 G O6 O N N 218 G N1 N N N 219 G C2 C N N 220 G N2 N N N 221 G N3 N N N 222 G C4 C Y N 223 G HOP3 H N N 224 G HOP2 H N N 225 G "H5'" H N N 226 G "H5''" H N N 227 G "H4'" H N N 228 G "H3'" H N N 229 G "HO3'" H N N 230 G "H2'" H N N 231 G "HO2'" H N N 232 G "H1'" H N N 233 G H8 H N N 234 G H1 H N N 235 G H21 H N N 236 G H22 H N N 237 GLN N N N N 238 GLN CA C N S 239 GLN C C N N 240 GLN O O N N 241 GLN CB C N N 242 GLN CG C N N 243 GLN CD C N N 244 GLN OE1 O N N 245 GLN NE2 N N N 246 GLN OXT O N N 247 GLN H H N N 248 GLN H2 H N N 249 GLN HA H N N 250 GLN HB2 H N N 251 GLN HB3 H N N 252 GLN HG2 H N N 253 GLN HG3 H N N 254 GLN HE21 H N N 255 GLN HE22 H N N 256 GLN HXT H N N 257 GLU N N N N 258 GLU CA C N S 259 GLU C C N N 260 GLU O O N N 261 GLU CB C N N 262 GLU CG C N N 263 GLU CD C N N 264 GLU OE1 O N N 265 GLU OE2 O N N 266 GLU OXT O N N 267 GLU H H N N 268 GLU H2 H N N 269 GLU HA H N N 270 GLU HB2 H N N 271 GLU HB3 H N N 272 GLU HG2 H N N 273 GLU HG3 H N N 274 GLU HE2 H N N 275 GLU HXT H N N 276 GLY N N N N 277 GLY CA C N N 278 GLY C C N N 279 GLY O O N N 280 GLY OXT O N N 281 GLY H H N N 282 GLY H2 H N N 283 GLY HA2 H N N 284 GLY HA3 H N N 285 GLY HXT H N N 286 HIS N N N N 287 HIS CA C N S 288 HIS C C N N 289 HIS O O N N 290 HIS CB C N N 291 HIS CG C Y N 292 HIS ND1 N Y N 293 HIS CD2 C Y N 294 HIS CE1 C Y N 295 HIS NE2 N Y N 296 HIS OXT O N N 297 HIS H H N N 298 HIS H2 H N N 299 HIS HA H N N 300 HIS HB2 H N N 301 HIS HB3 H N N 302 HIS HD1 H N N 303 HIS HD2 H N N 304 HIS HE1 H N N 305 HIS HE2 H N N 306 HIS HXT H N N 307 HOH O O N N 308 HOH H1 H N N 309 HOH H2 H N N 310 ILE N N N N 311 ILE CA C N S 312 ILE C C N N 313 ILE O O N N 314 ILE CB C N S 315 ILE CG1 C N N 316 ILE CG2 C N N 317 ILE CD1 C N N 318 ILE OXT O N N 319 ILE H H N N 320 ILE H2 H N N 321 ILE HA H N N 322 ILE HB H N N 323 ILE HG12 H N N 324 ILE HG13 H N N 325 ILE HG21 H N N 326 ILE HG22 H N N 327 ILE HG23 H N N 328 ILE HD11 H N N 329 ILE HD12 H N N 330 ILE HD13 H N N 331 ILE HXT H N N 332 LEU N N N N 333 LEU CA C N S 334 LEU C C N N 335 LEU O O N N 336 LEU CB C N N 337 LEU CG C N N 338 LEU CD1 C N N 339 LEU CD2 C N N 340 LEU OXT O N N 341 LEU H H N N 342 LEU H2 H N N 343 LEU HA H N N 344 LEU HB2 H N N 345 LEU HB3 H N N 346 LEU HG H N N 347 LEU HD11 H N N 348 LEU HD12 H N N 349 LEU HD13 H N N 350 LEU HD21 H N N 351 LEU HD22 H N N 352 LEU HD23 H N N 353 LEU HXT H N N 354 LYS N N N N 355 LYS CA C N S 356 LYS C C N N 357 LYS O O N N 358 LYS CB C N N 359 LYS CG C N N 360 LYS CD C N N 361 LYS CE C N N 362 LYS NZ N N N 363 LYS OXT O N N 364 LYS H H N N 365 LYS H2 H N N 366 LYS HA H N N 367 LYS HB2 H N N 368 LYS HB3 H N N 369 LYS HG2 H N N 370 LYS HG3 H N N 371 LYS HD2 H N N 372 LYS HD3 H N N 373 LYS HE2 H N N 374 LYS HE3 H N N 375 LYS HZ1 H N N 376 LYS HZ2 H N N 377 LYS HZ3 H N N 378 LYS HXT H N N 379 MET N N N N 380 MET CA C N S 381 MET C C N N 382 MET O O N N 383 MET CB C N N 384 MET CG C N N 385 MET SD S N N 386 MET CE C N N 387 MET OXT O N N 388 MET H H N N 389 MET H2 H N N 390 MET HA H N N 391 MET HB2 H N N 392 MET HB3 H N N 393 MET HG2 H N N 394 MET HG3 H N N 395 MET HE1 H N N 396 MET HE2 H N N 397 MET HE3 H N N 398 MET HXT H N N 399 PHE N N N N 400 PHE CA C N S 401 PHE C C N N 402 PHE O O N N 403 PHE CB C N N 404 PHE CG C Y N 405 PHE CD1 C Y N 406 PHE CD2 C Y N 407 PHE CE1 C Y N 408 PHE CE2 C Y N 409 PHE CZ C Y N 410 PHE OXT O N N 411 PHE H H N N 412 PHE H2 H N N 413 PHE HA H N N 414 PHE HB2 H N N 415 PHE HB3 H N N 416 PHE HD1 H N N 417 PHE HD2 H N N 418 PHE HE1 H N N 419 PHE HE2 H N N 420 PHE HZ H N N 421 PHE HXT H N N 422 PRO N N N N 423 PRO CA C N S 424 PRO C C N N 425 PRO O O N N 426 PRO CB C N N 427 PRO CG C N N 428 PRO CD C N N 429 PRO OXT O N N 430 PRO H H N N 431 PRO HA H N N 432 PRO HB2 H N N 433 PRO HB3 H N N 434 PRO HG2 H N N 435 PRO HG3 H N N 436 PRO HD2 H N N 437 PRO HD3 H N N 438 PRO HXT H N N 439 SER N N N N 440 SER CA C N S 441 SER C C N N 442 SER O O N N 443 SER CB C N N 444 SER OG O N N 445 SER OXT O N N 446 SER H H N N 447 SER H2 H N N 448 SER HA H N N 449 SER HB2 H N N 450 SER HB3 H N N 451 SER HG H N N 452 SER HXT H N N 453 SO4 S S N N 454 SO4 O1 O N N 455 SO4 O2 O N N 456 SO4 O3 O N N 457 SO4 O4 O N N 458 THR N N N N 459 THR CA C N S 460 THR C C N N 461 THR O O N N 462 THR CB C N R 463 THR OG1 O N N 464 THR CG2 C N N 465 THR OXT O N N 466 THR H H N N 467 THR H2 H N N 468 THR HA H N N 469 THR HB H N N 470 THR HG1 H N N 471 THR HG21 H N N 472 THR HG22 H N N 473 THR HG23 H N N 474 THR HXT H N N 475 TRP N N N N 476 TRP CA C N S 477 TRP C C N N 478 TRP O O N N 479 TRP CB C N N 480 TRP CG C Y N 481 TRP CD1 C Y N 482 TRP CD2 C Y N 483 TRP NE1 N Y N 484 TRP CE2 C Y N 485 TRP CE3 C Y N 486 TRP CZ2 C Y N 487 TRP CZ3 C Y N 488 TRP CH2 C Y N 489 TRP OXT O N N 490 TRP H H N N 491 TRP H2 H N N 492 TRP HA H N N 493 TRP HB2 H N N 494 TRP HB3 H N N 495 TRP HD1 H N N 496 TRP HE1 H N N 497 TRP HE3 H N N 498 TRP HZ2 H N N 499 TRP HZ3 H N N 500 TRP HH2 H N N 501 TRP HXT H N N 502 TYR N N N N 503 TYR CA C N S 504 TYR C C N N 505 TYR O O N N 506 TYR CB C N N 507 TYR CG C Y N 508 TYR CD1 C Y N 509 TYR CD2 C Y N 510 TYR CE1 C Y N 511 TYR CE2 C Y N 512 TYR CZ C Y N 513 TYR OH O N N 514 TYR OXT O N N 515 TYR H H N N 516 TYR H2 H N N 517 TYR HA H N N 518 TYR HB2 H N N 519 TYR HB3 H N N 520 TYR HD1 H N N 521 TYR HD2 H N N 522 TYR HE1 H N N 523 TYR HE2 H N N 524 TYR HH H N N 525 TYR HXT H N N 526 U OP3 O N N 527 U P P N N 528 U OP1 O N N 529 U OP2 O N N 530 U "O5'" O N N 531 U "C5'" C N N 532 U "C4'" C N R 533 U "O4'" O N N 534 U "C3'" C N S 535 U "O3'" O N N 536 U "C2'" C N R 537 U "O2'" O N N 538 U "C1'" C N R 539 U N1 N N N 540 U C2 C N N 541 U O2 O N N 542 U N3 N N N 543 U C4 C N N 544 U O4 O N N 545 U C5 C N N 546 U C6 C N N 547 U HOP3 H N N 548 U HOP2 H N N 549 U "H5'" H N N 550 U "H5''" H N N 551 U "H4'" H N N 552 U "H3'" H N N 553 U "HO3'" H N N 554 U "H2'" H N N 555 U "HO2'" H N N 556 U "H1'" H N N 557 U H3 H N N 558 U H5 H N N 559 U H6 H N N 560 VAL N N N N 561 VAL CA C N S 562 VAL C C N N 563 VAL O O N N 564 VAL CB C N N 565 VAL CG1 C N N 566 VAL CG2 C N N 567 VAL OXT O N N 568 VAL H H N N 569 VAL H2 H N N 570 VAL HA H N N 571 VAL HB H N N 572 VAL HG11 H N N 573 VAL HG12 H N N 574 VAL HG13 H N N 575 VAL HG21 H N N 576 VAL HG22 H N N 577 VAL HG23 H N N 578 VAL HXT H N N 579 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 ALA N CA sing N N 82 ALA N H sing N N 83 ALA N H2 sing N N 84 ALA CA C sing N N 85 ALA CA CB sing N N 86 ALA CA HA sing N N 87 ALA C O doub N N 88 ALA C OXT sing N N 89 ALA CB HB1 sing N N 90 ALA CB HB2 sing N N 91 ALA CB HB3 sing N N 92 ALA OXT HXT sing N N 93 ARG N CA sing N N 94 ARG N H sing N N 95 ARG N H2 sing N N 96 ARG CA C sing N N 97 ARG CA CB sing N N 98 ARG CA HA sing N N 99 ARG C O doub N N 100 ARG C OXT sing N N 101 ARG CB CG sing N N 102 ARG CB HB2 sing N N 103 ARG CB HB3 sing N N 104 ARG CG CD sing N N 105 ARG CG HG2 sing N N 106 ARG CG HG3 sing N N 107 ARG CD NE sing N N 108 ARG CD HD2 sing N N 109 ARG CD HD3 sing N N 110 ARG NE CZ sing N N 111 ARG NE HE sing N N 112 ARG CZ NH1 sing N N 113 ARG CZ NH2 doub N N 114 ARG NH1 HH11 sing N N 115 ARG NH1 HH12 sing N N 116 ARG NH2 HH21 sing N N 117 ARG NH2 HH22 sing N N 118 ARG OXT HXT sing N N 119 ASN N CA sing N N 120 ASN N H sing N N 121 ASN N H2 sing N N 122 ASN CA C sing N N 123 ASN CA CB sing N N 124 ASN CA HA sing N N 125 ASN C O doub N N 126 ASN C OXT sing N N 127 ASN CB CG sing N N 128 ASN CB HB2 sing N N 129 ASN CB HB3 sing N N 130 ASN CG OD1 doub N N 131 ASN CG ND2 sing N N 132 ASN ND2 HD21 sing N N 133 ASN ND2 HD22 sing N N 134 ASN OXT HXT sing N N 135 ASP N CA sing N N 136 ASP N H sing N N 137 ASP N H2 sing N N 138 ASP CA C sing N N 139 ASP CA CB sing N N 140 ASP CA HA sing N N 141 ASP C O doub N N 142 ASP C OXT sing N N 143 ASP CB CG sing N N 144 ASP CB HB2 sing N N 145 ASP CB HB3 sing N N 146 ASP CG OD1 doub N N 147 ASP CG OD2 sing N N 148 ASP OD2 HD2 sing N N 149 ASP OXT HXT sing N N 150 C OP3 P sing N N 151 C OP3 HOP3 sing N N 152 C P OP1 doub N N 153 C P OP2 sing N N 154 C P "O5'" sing N N 155 C OP2 HOP2 sing N N 156 C "O5'" "C5'" sing N N 157 C "C5'" "C4'" sing N N 158 C "C5'" "H5'" sing N N 159 C "C5'" "H5''" sing N N 160 C "C4'" "O4'" sing N N 161 C "C4'" "C3'" sing N N 162 C "C4'" "H4'" sing N N 163 C "O4'" "C1'" sing N N 164 C "C3'" "O3'" sing N N 165 C "C3'" "C2'" sing N N 166 C "C3'" "H3'" sing N N 167 C "O3'" "HO3'" sing N N 168 C "C2'" "O2'" sing N N 169 C "C2'" "C1'" sing N N 170 C "C2'" "H2'" sing N N 171 C "O2'" "HO2'" sing N N 172 C "C1'" N1 sing N N 173 C "C1'" "H1'" sing N N 174 C N1 C2 sing N N 175 C N1 C6 sing N N 176 C C2 O2 doub N N 177 C C2 N3 sing N N 178 C N3 C4 doub N N 179 C C4 N4 sing N N 180 C C4 C5 sing N N 181 C N4 H41 sing N N 182 C N4 H42 sing N N 183 C C5 C6 doub N N 184 C C5 H5 sing N N 185 C C6 H6 sing N N 186 CYS N CA sing N N 187 CYS N H sing N N 188 CYS N H2 sing N N 189 CYS CA C sing N N 190 CYS CA CB sing N N 191 CYS CA HA sing N N 192 CYS C O doub N N 193 CYS C OXT sing N N 194 CYS CB SG sing N N 195 CYS CB HB2 sing N N 196 CYS CB HB3 sing N N 197 CYS SG HG sing N N 198 CYS OXT HXT sing N N 199 G OP3 P sing N N 200 G OP3 HOP3 sing N N 201 G P OP1 doub N N 202 G P OP2 sing N N 203 G P "O5'" sing N N 204 G OP2 HOP2 sing N N 205 G "O5'" "C5'" sing N N 206 G "C5'" "C4'" sing N N 207 G "C5'" "H5'" sing N N 208 G "C5'" "H5''" sing N N 209 G "C4'" "O4'" sing N N 210 G "C4'" "C3'" sing N N 211 G "C4'" "H4'" sing N N 212 G "O4'" "C1'" sing N N 213 G "C3'" "O3'" sing N N 214 G "C3'" "C2'" sing N N 215 G "C3'" "H3'" sing N N 216 G "O3'" "HO3'" sing N N 217 G "C2'" "O2'" sing N N 218 G "C2'" "C1'" sing N N 219 G "C2'" "H2'" sing N N 220 G "O2'" "HO2'" sing N N 221 G "C1'" N9 sing N N 222 G "C1'" "H1'" sing N N 223 G N9 C8 sing Y N 224 G N9 C4 sing Y N 225 G C8 N7 doub Y N 226 G C8 H8 sing N N 227 G N7 C5 sing Y N 228 G C5 C6 sing N N 229 G C5 C4 doub Y N 230 G C6 O6 doub N N 231 G C6 N1 sing N N 232 G N1 C2 sing N N 233 G N1 H1 sing N N 234 G C2 N2 sing N N 235 G C2 N3 doub N N 236 G N2 H21 sing N N 237 G N2 H22 sing N N 238 G N3 C4 sing N N 239 GLN N CA sing N N 240 GLN N H sing N N 241 GLN N H2 sing N N 242 GLN CA C sing N N 243 GLN CA CB sing N N 244 GLN CA HA sing N N 245 GLN C O doub N N 246 GLN C OXT sing N N 247 GLN CB CG sing N N 248 GLN CB HB2 sing N N 249 GLN CB HB3 sing N N 250 GLN CG CD sing N N 251 GLN CG HG2 sing N N 252 GLN CG HG3 sing N N 253 GLN CD OE1 doub N N 254 GLN CD NE2 sing N N 255 GLN NE2 HE21 sing N N 256 GLN NE2 HE22 sing N N 257 GLN OXT HXT sing N N 258 GLU N CA sing N N 259 GLU N H sing N N 260 GLU N H2 sing N N 261 GLU CA C sing N N 262 GLU CA CB sing N N 263 GLU CA HA sing N N 264 GLU C O doub N N 265 GLU C OXT sing N N 266 GLU CB CG sing N N 267 GLU CB HB2 sing N N 268 GLU CB HB3 sing N N 269 GLU CG CD sing N N 270 GLU CG HG2 sing N N 271 GLU CG HG3 sing N N 272 GLU CD OE1 doub N N 273 GLU CD OE2 sing N N 274 GLU OE2 HE2 sing N N 275 GLU OXT HXT sing N N 276 GLY N CA sing N N 277 GLY N H sing N N 278 GLY N H2 sing N N 279 GLY CA C sing N N 280 GLY CA HA2 sing N N 281 GLY CA HA3 sing N N 282 GLY C O doub N N 283 GLY C OXT sing N N 284 GLY OXT HXT sing N N 285 HIS N CA sing N N 286 HIS N H sing N N 287 HIS N H2 sing N N 288 HIS CA C sing N N 289 HIS CA CB sing N N 290 HIS CA HA sing N N 291 HIS C O doub N N 292 HIS C OXT sing N N 293 HIS CB CG sing N N 294 HIS CB HB2 sing N N 295 HIS CB HB3 sing N N 296 HIS CG ND1 sing Y N 297 HIS CG CD2 doub Y N 298 HIS ND1 CE1 doub Y N 299 HIS ND1 HD1 sing N N 300 HIS CD2 NE2 sing Y N 301 HIS CD2 HD2 sing N N 302 HIS CE1 NE2 sing Y N 303 HIS CE1 HE1 sing N N 304 HIS NE2 HE2 sing N N 305 HIS OXT HXT sing N N 306 HOH O H1 sing N N 307 HOH O H2 sing N N 308 ILE N CA sing N N 309 ILE N H sing N N 310 ILE N H2 sing N N 311 ILE CA C sing N N 312 ILE CA CB sing N N 313 ILE CA HA sing N N 314 ILE C O doub N N 315 ILE C OXT sing N N 316 ILE CB CG1 sing N N 317 ILE CB CG2 sing N N 318 ILE CB HB sing N N 319 ILE CG1 CD1 sing N N 320 ILE CG1 HG12 sing N N 321 ILE CG1 HG13 sing N N 322 ILE CG2 HG21 sing N N 323 ILE CG2 HG22 sing N N 324 ILE CG2 HG23 sing N N 325 ILE CD1 HD11 sing N N 326 ILE CD1 HD12 sing N N 327 ILE CD1 HD13 sing N N 328 ILE OXT HXT sing N N 329 LEU N CA sing N N 330 LEU N H sing N N 331 LEU N H2 sing N N 332 LEU CA C sing N N 333 LEU CA CB sing N N 334 LEU CA HA sing N N 335 LEU C O doub N N 336 LEU C OXT sing N N 337 LEU CB CG sing N N 338 LEU CB HB2 sing N N 339 LEU CB HB3 sing N N 340 LEU CG CD1 sing N N 341 LEU CG CD2 sing N N 342 LEU CG HG sing N N 343 LEU CD1 HD11 sing N N 344 LEU CD1 HD12 sing N N 345 LEU CD1 HD13 sing N N 346 LEU CD2 HD21 sing N N 347 LEU CD2 HD22 sing N N 348 LEU CD2 HD23 sing N N 349 LEU OXT HXT sing N N 350 LYS N CA sing N N 351 LYS N H sing N N 352 LYS N H2 sing N N 353 LYS CA C sing N N 354 LYS CA CB sing N N 355 LYS CA HA sing N N 356 LYS C O doub N N 357 LYS C OXT sing N N 358 LYS CB CG sing N N 359 LYS CB HB2 sing N N 360 LYS CB HB3 sing N N 361 LYS CG CD sing N N 362 LYS CG HG2 sing N N 363 LYS CG HG3 sing N N 364 LYS CD CE sing N N 365 LYS CD HD2 sing N N 366 LYS CD HD3 sing N N 367 LYS CE NZ sing N N 368 LYS CE HE2 sing N N 369 LYS CE HE3 sing N N 370 LYS NZ HZ1 sing N N 371 LYS NZ HZ2 sing N N 372 LYS NZ HZ3 sing N N 373 LYS OXT HXT sing N N 374 MET N CA sing N N 375 MET N H sing N N 376 MET N H2 sing N N 377 MET CA C sing N N 378 MET CA CB sing N N 379 MET CA HA sing N N 380 MET C O doub N N 381 MET C OXT sing N N 382 MET CB CG sing N N 383 MET CB HB2 sing N N 384 MET CB HB3 sing N N 385 MET CG SD sing N N 386 MET CG HG2 sing N N 387 MET CG HG3 sing N N 388 MET SD CE sing N N 389 MET CE HE1 sing N N 390 MET CE HE2 sing N N 391 MET CE HE3 sing N N 392 MET OXT HXT sing N N 393 PHE N CA sing N N 394 PHE N H sing N N 395 PHE N H2 sing N N 396 PHE CA C sing N N 397 PHE CA CB sing N N 398 PHE CA HA sing N N 399 PHE C O doub N N 400 PHE C OXT sing N N 401 PHE CB CG sing N N 402 PHE CB HB2 sing N N 403 PHE CB HB3 sing N N 404 PHE CG CD1 doub Y N 405 PHE CG CD2 sing Y N 406 PHE CD1 CE1 sing Y N 407 PHE CD1 HD1 sing N N 408 PHE CD2 CE2 doub Y N 409 PHE CD2 HD2 sing N N 410 PHE CE1 CZ doub Y N 411 PHE CE1 HE1 sing N N 412 PHE CE2 CZ sing Y N 413 PHE CE2 HE2 sing N N 414 PHE CZ HZ sing N N 415 PHE OXT HXT sing N N 416 PRO N CA sing N N 417 PRO N CD sing N N 418 PRO N H sing N N 419 PRO CA C sing N N 420 PRO CA CB sing N N 421 PRO CA HA sing N N 422 PRO C O doub N N 423 PRO C OXT sing N N 424 PRO CB CG sing N N 425 PRO CB HB2 sing N N 426 PRO CB HB3 sing N N 427 PRO CG CD sing N N 428 PRO CG HG2 sing N N 429 PRO CG HG3 sing N N 430 PRO CD HD2 sing N N 431 PRO CD HD3 sing N N 432 PRO OXT HXT sing N N 433 SER N CA sing N N 434 SER N H sing N N 435 SER N H2 sing N N 436 SER CA C sing N N 437 SER CA CB sing N N 438 SER CA HA sing N N 439 SER C O doub N N 440 SER C OXT sing N N 441 SER CB OG sing N N 442 SER CB HB2 sing N N 443 SER CB HB3 sing N N 444 SER OG HG sing N N 445 SER OXT HXT sing N N 446 SO4 S O1 doub N N 447 SO4 S O2 doub N N 448 SO4 S O3 sing N N 449 SO4 S O4 sing N N 450 THR N CA sing N N 451 THR N H sing N N 452 THR N H2 sing N N 453 THR CA C sing N N 454 THR CA CB sing N N 455 THR CA HA sing N N 456 THR C O doub N N 457 THR C OXT sing N N 458 THR CB OG1 sing N N 459 THR CB CG2 sing N N 460 THR CB HB sing N N 461 THR OG1 HG1 sing N N 462 THR CG2 HG21 sing N N 463 THR CG2 HG22 sing N N 464 THR CG2 HG23 sing N N 465 THR OXT HXT sing N N 466 TRP N CA sing N N 467 TRP N H sing N N 468 TRP N H2 sing N N 469 TRP CA C sing N N 470 TRP CA CB sing N N 471 TRP CA HA sing N N 472 TRP C O doub N N 473 TRP C OXT sing N N 474 TRP CB CG sing N N 475 TRP CB HB2 sing N N 476 TRP CB HB3 sing N N 477 TRP CG CD1 doub Y N 478 TRP CG CD2 sing Y N 479 TRP CD1 NE1 sing Y N 480 TRP CD1 HD1 sing N N 481 TRP CD2 CE2 doub Y N 482 TRP CD2 CE3 sing Y N 483 TRP NE1 CE2 sing Y N 484 TRP NE1 HE1 sing N N 485 TRP CE2 CZ2 sing Y N 486 TRP CE3 CZ3 doub Y N 487 TRP CE3 HE3 sing N N 488 TRP CZ2 CH2 doub Y N 489 TRP CZ2 HZ2 sing N N 490 TRP CZ3 CH2 sing Y N 491 TRP CZ3 HZ3 sing N N 492 TRP CH2 HH2 sing N N 493 TRP OXT HXT sing N N 494 TYR N CA sing N N 495 TYR N H sing N N 496 TYR N H2 sing N N 497 TYR CA C sing N N 498 TYR CA CB sing N N 499 TYR CA HA sing N N 500 TYR C O doub N N 501 TYR C OXT sing N N 502 TYR CB CG sing N N 503 TYR CB HB2 sing N N 504 TYR CB HB3 sing N N 505 TYR CG CD1 doub Y N 506 TYR CG CD2 sing Y N 507 TYR CD1 CE1 sing Y N 508 TYR CD1 HD1 sing N N 509 TYR CD2 CE2 doub Y N 510 TYR CD2 HD2 sing N N 511 TYR CE1 CZ doub Y N 512 TYR CE1 HE1 sing N N 513 TYR CE2 CZ sing Y N 514 TYR CE2 HE2 sing N N 515 TYR CZ OH sing N N 516 TYR OH HH sing N N 517 TYR OXT HXT sing N N 518 U OP3 P sing N N 519 U OP3 HOP3 sing N N 520 U P OP1 doub N N 521 U P OP2 sing N N 522 U P "O5'" sing N N 523 U OP2 HOP2 sing N N 524 U "O5'" "C5'" sing N N 525 U "C5'" "C4'" sing N N 526 U "C5'" "H5'" sing N N 527 U "C5'" "H5''" sing N N 528 U "C4'" "O4'" sing N N 529 U "C4'" "C3'" sing N N 530 U "C4'" "H4'" sing N N 531 U "O4'" "C1'" sing N N 532 U "C3'" "O3'" sing N N 533 U "C3'" "C2'" sing N N 534 U "C3'" "H3'" sing N N 535 U "O3'" "HO3'" sing N N 536 U "C2'" "O2'" sing N N 537 U "C2'" "C1'" sing N N 538 U "C2'" "H2'" sing N N 539 U "O2'" "HO2'" sing N N 540 U "C1'" N1 sing N N 541 U "C1'" "H1'" sing N N 542 U N1 C2 sing N N 543 U N1 C6 sing N N 544 U C2 O2 doub N N 545 U C2 N3 sing N N 546 U N3 C4 sing N N 547 U N3 H3 sing N N 548 U C4 O4 doub N N 549 U C4 C5 sing N N 550 U C5 C6 doub N N 551 U C5 H5 sing N N 552 U C6 H6 sing N N 553 VAL N CA sing N N 554 VAL N H sing N N 555 VAL N H2 sing N N 556 VAL CA C sing N N 557 VAL CA CB sing N N 558 VAL CA HA sing N N 559 VAL C O doub N N 560 VAL C OXT sing N N 561 VAL CB CG1 sing N N 562 VAL CB CG2 sing N N 563 VAL CB HB sing N N 564 VAL CG1 HG11 sing N N 565 VAL CG1 HG12 sing N N 566 VAL CG1 HG13 sing N N 567 VAL CG2 HG21 sing N N 568 VAL CG2 HG22 sing N N 569 VAL CG2 HG23 sing N N 570 VAL OXT HXT sing N N 571 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2XDB 'double helix' 2XDB 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B A 5 1_555 B U 20 1_555 -0.358 0.000 0.202 -19.840 -0.595 -1.220 1 G_A1:U16_G G 1 ? G 16 ? 20 1 1 B G 6 1_555 B C 19 1_555 -0.465 -0.186 0.237 -1.634 -16.283 2.515 2 G_G2:C15_G G 2 ? G 15 ? 19 1 1 B G 7 1_555 B C 18 1_555 -0.282 -0.156 0.121 -9.266 -27.263 3.547 3 G_G3:C14_G G 3 ? G 14 ? 19 1 1 B U 8 1_555 B A 17 1_555 -0.076 0.216 -0.205 -16.672 -23.724 -10.411 4 G_U4:A13_G G 4 ? G 13 ? 20 1 1 B U 26 1_555 B U 16 1_555 -2.718 -1.681 -0.128 -12.103 -14.886 8.978 5 G_U22:U12_G G 22 ? G 12 ? 16 1 1 B G 27 1_555 B C 15 1_555 -0.490 -0.078 -0.279 -12.889 -7.539 5.791 6 G_G23:C11_G G 23 ? G 11 ? 19 1 1 B C 28 1_555 B G 14 1_555 -0.235 -0.087 0.429 -8.275 -5.099 2.104 7 G_C24:G10_G G 24 ? G 10 ? 19 1 1 B A 29 1_555 B U 13 1_555 0.030 -0.126 -0.131 -5.321 0.415 0.588 8 G_A25:U9_G G 25 ? G 9 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B A 5 1_555 B U 20 1_555 B G 6 1_555 B C 19 1_555 -0.074 -1.339 2.878 3.347 1.518 31.602 -2.683 0.666 2.790 2.775 -6.121 31.810 1 GG_A1G2:C15U16_GG G 1 ? G 16 ? G 2 ? G 15 ? 1 B G 6 1_555 B C 19 1_555 B G 7 1_555 B C 18 1_555 1.026 -1.765 3.422 2.837 8.298 31.497 -4.566 -1.336 2.953 14.928 -5.103 32.666 2 GG_G2G3:C14C15_GG G 2 ? G 15 ? G 3 ? G 14 ? 1 B G 7 1_555 B C 18 1_555 B U 8 1_555 B A 17 1_555 -1.150 -1.672 3.200 2.143 4.964 39.127 -3.024 1.939 2.911 7.369 -3.182 39.485 3 GG_G3U4:A13C14_GG G 3 ? G 14 ? G 4 ? G 13 ? 1 B U 8 1_555 B A 17 1_555 B U 26 1_555 B U 16 1_555 -1.066 -3.295 3.513 15.334 6.865 47.417 -4.365 2.324 2.601 8.240 -18.406 50.143 4 GG_U4U22:U12A13_GG G 4 ? G 13 ? G 22 ? G 12 ? 1 B U 26 1_555 B U 16 1_555 B G 27 1_555 B C 15 1_555 -0.528 -1.162 3.265 -0.829 5.055 41.581 -2.143 0.654 3.119 7.087 1.163 41.881 5 GG_U22G23:C11U12_GG G 22 ? G 12 ? G 23 ? G 11 ? 1 B G 27 1_555 B C 15 1_555 B C 28 1_555 B G 14 1_555 -0.371 -1.169 3.115 -4.386 7.163 30.774 -3.331 -0.061 2.803 13.192 8.078 31.873 6 GG_G23C24:G10C11_GG G 23 ? G 11 ? G 24 ? G 10 ? 1 B C 28 1_555 B G 14 1_555 B A 29 1_555 B U 13 1_555 0.957 -1.890 3.097 3.972 4.521 29.941 -4.419 -1.089 2.888 8.641 -7.591 30.527 7 GG_C24A25:U9G10_GG G 24 ? G 10 ? G 25 ? G 9 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 'COBALT (II) ION' CO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2XDD _pdbx_initial_refinement_model.details 'PDB ENTRY 2XDD' #