HEADER OXIDOREDUCTASE 07-JUL-10 2XJK TITLE MONOMERIC HUMAN CU,ZN SUPEROXIDE DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE, METAL-BINDING, PROTEIN FOLDING, NEURODEGENERATION EXPDTA X-RAY DIFFRACTION AUTHOR K.SARABOJI,L.LEINARTAITE,A.NORDLUND,M.OLIVEBERG,D.T.LOGAN REVDAT 4 20-DEC-23 2XJK 1 REMARK LINK REVDAT 3 17-JAN-18 2XJK 1 REMARK REVDAT 2 20-OCT-10 2XJK 1 JRNL REMARK REVDAT 1 01-SEP-10 2XJK 0 JRNL AUTH L.LEINARTAITE,K.SARABOJI,A.NORDLUND,D.T.LOGAN,M.OLIVEBERG JRNL TITL FOLDING CATALYSIS BY TRANSIENT COORDINATION OF ZN2+ TO THE JRNL TITL 2 CU LIGANDS OF THE ALS-ASSOCIATED ENZYME CU/ZN SUPEROXIDE JRNL TITL 3 DISMUTASE 1. JRNL REF J.AM.CHEM.SOC. V. 132 13495 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20822138 JRNL DOI 10.1021/JA1057136 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.NORDLUND,L.LEINARTAITE,K.SARABOJI,C.AISENBREY,G.GROBNER, REMARK 1 AUTH 2 P.ZETTERSTROM,J.DANIELSSON,D.T.LOGAN,M.OLIVEBERG REMARK 1 TITL FUNCTIONAL FEATURES CAUSE MISFOLDING OF THE ALS-PROVOKING REMARK 1 TITL 2 ENZYME SOD1. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 106 9667 2009 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 19497878 REMARK 1 DOI 10.1073/PNAS.0812046106 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 23963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1753 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.574 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1149 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 758 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1551 ; 1.201 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1882 ; 0.842 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 152 ; 6.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;39.359 ;26.078 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;11.073 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 174 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1312 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 199 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 750 ; 1.217 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 324 ; 0.293 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1201 ; 2.078 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 399 ; 2.384 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 350 ; 3.743 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1907 ; 1.066 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 2153 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8784 -3.4637 10.1639 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0080 REMARK 3 T33: 0.0055 T12: 0.0046 REMARK 3 T13: -0.0028 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5905 L22: 0.5753 REMARK 3 L33: 0.7270 L12: -0.0516 REMARK 3 L13: -0.4128 L23: 0.2605 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.0276 S13: 0.0301 REMARK 3 S21: 0.0374 S22: 0.0263 S23: 0.0034 REMARK 3 S31: 0.0229 S32: 0.0319 S33: -0.0056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. TLS ADDED WITH U VALUES. ATOM RECORD CONTAINS SUM OF REMARK 3 TLS AND RESIDUAL B FACTORS. REMARK 4 REMARK 4 2XJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9085 REMARK 200 MONOCHROMATOR : BENT SI (220) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25245 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1MFM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 6000, 0.1M MES (PH 6.0), 0.01M REMARK 280 ZNCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.58000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.22000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.22000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.58000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 7 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, PHE 51 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLY 52 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 112 TO ALA REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2001 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A2021 DISTANCE = 6.53 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 156 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 1 O REMARK 620 2 GLU A 51 OE2 91.1 REMARK 620 3 ASP A 96 OD2 87.5 98.2 REMARK 620 4 HOH A2153 O 163.4 105.3 92.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 154 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 126.2 REMARK 620 3 HIS A 120 NE2 97.1 107.9 REMARK 620 4 HOH A2063 O 128.2 99.3 89.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 157 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE2 REMARK 620 2 ASP A 52 OD2 97.9 REMARK 620 3 ASP A 90 OD2 106.9 104.8 REMARK 620 4 ASP A 92 OD1 124.6 118.6 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 103.6 REMARK 620 3 HIS A 80 ND1 110.3 120.9 REMARK 620 4 ASP A 83 OD1 107.5 98.2 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 158 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 110 NE2 REMARK 620 2 GLN A 153 OXT 89.2 REMARK 620 3 GLN A 153 O 135.8 55.6 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZ6 RELATED DB: PDB REMARK 900 G93A SOD1 MUTANT COMPLEXED WITH QUINAZOLINE. REMARK 900 RELATED ID: 1PTZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN CU, ZN SUPEROXIDE DISMUTASE,FAMILIAL REMARK 900 AMYOTROPHIC LATERAL SCLEROSIS (FALS) MUTANT H43R REMARK 900 RELATED ID: 1OEZ RELATED DB: PDB REMARK 900 ZN HIS46ARG MUTANT OF HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1HL4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF APO TYPE HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1AZV RELATED DB: PDB REMARK 900 FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN) REMARK 900 RELATED ID: 2WYZ RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH UMP REMARK 900 RELATED ID: 1OZU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAMILIAL ALS MUTANT S134N OF HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE ( CUZNSOD) TO 1.3A RESOLUTION REMARK 900 RELATED ID: 2VR6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.3 A RESOLUTION REMARK 900 RELATED ID: 2C9V RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2WZ5 RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH L-METHIONINE. REMARK 900 RELATED ID: 1PU0 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CU,ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1FUN RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH LYS 136 REPLACED BY GLU, CYS 6 REMARK 900 REPLACED BY ALA AND CYS 111 REPLACED BY SER (K136E, C6A, C111S) REMARK 900 RELATED ID: 1SOS RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA AND CYS 111 REMARK 900 REPLACED BY SER (C6A, C111S) REMARK 900 RELATED ID: 1N19 RELATED DB: PDB REMARK 900 STRUCTURE OF THE HSOD A4V MUTANT REMARK 900 RELATED ID: 1P1V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FALS-ASSOCIATED HUMAN COPPER-ZINCSUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) MUTANT D125H TO 1.4A REMARK 900 RELATED ID: 2WKO RELATED DB: PDB REMARK 900 STRUCTURE OF METAL LOADED PATHOGENIC SOD1 MUTANT G93A. REMARK 900 RELATED ID: 1L3N RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED DIMERIC COPPER ZINC SOD:THE REMARK 900 STRUCTURAL EFFECTS OF DIMERIZATION REMARK 900 RELATED ID: 2WZ0 RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH ANILINE. REMARK 900 RELATED ID: 1UXL RELATED DB: PDB REMARK 900 I113T MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 2AF2 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DISULFIDE REDUCED AND COPPER DEPLETEDHUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2VR8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.36 A RESOLUTION REMARK 900 RELATED ID: 1RK7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF APO CU,ZN SUPEROXIDE DISMUTASE: ROLEOF METAL REMARK 900 IONS IN PROTEIN FOLDING REMARK 900 RELATED ID: 2VR7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.58 A RESOLUTION REMARK 900 RELATED ID: 2C9S RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF ZN- ZN HUMAN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 4SOD RELATED DB: PDB REMARK 900 CU,ZN SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA AND REMARK 900 CYS 111 REPLACED BY SER (C6A,C111S) WITH AN 18-RESIDUE HEPARIN- REMARK 900 BINDING PEPTIDE FUSED TO THE C- TERMINUS (THEORETICAL MODEL) REMARK 900 RELATED ID: 2V0A RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION CRYSTAL STRUCTURE OF HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1MFM RELATED DB: PDB REMARK 900 MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2WYT RELATED DB: PDB REMARK 900 1.0 A RESOLUTION STRUCTURE OF L38V SOD1 MUTANT REMARK 900 RELATED ID: 1DSW RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF A MONOMERIC, REDUCED FORM OFHUMAN COPPER, REMARK 900 ZINC SUPEROXIDE DISMUTASE BEARING THE SAMECHARGE AS THE NATIVE REMARK 900 PROTEIN REMARK 900 RELATED ID: 1KMG RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF MONOMERIC COPPER- FREE SUPEROXIDEDISMUTASE REMARK 900 RELATED ID: 1OZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-H46R FAMILIAL ALS MUTANT HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE ( CUZNSOD) TO 2.5A RESOLUTION REMARK 900 RELATED ID: 1N18 RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF HUMAN SUPEROXIDE DISMUTASE, C6A,C111S REMARK 900 RELATED ID: 1BA9 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED MONOMERIC SUPEROXIDE DISMUTASE, REMARK 900 NMR, 36 STRUCTURES REMARK 900 RELATED ID: 1HL5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HOLO TYPE HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2C9U RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF AS- ISOLATED CU-ZN HUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1SPD RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1UXM RELATED DB: PDB REMARK 900 A4V MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 2XJL RELATED DB: PDB REMARK 900 MONOMERIC HUMAN CU,ZN SUPEROXIDE DISMUTASE WITHOUT CU LIGANDS DBREF 2XJK A 1 153 UNP P00441 SODC_HUMAN 2 154 SEQADV 2XJK ALA A 6 UNP P00441 CYS 7 ENGINEERED MUTATION SEQADV 2XJK GLU A 50 UNP P00441 PHE 51 ENGINEERED MUTATION SEQADV 2XJK GLU A 51 UNP P00441 GLY 52 ENGINEERED MUTATION SEQADV 2XJK ALA A 111 UNP P00441 CYS 112 ENGINEERED MUTATION SEQRES 1 A 153 ALA THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU GLU GLU ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS ALA ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET CU A 154 1 HET ZN A 155 1 HET ZN A 156 1 HET ZN A 157 1 HET ZN A 158 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 2 CU CU 2+ FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *153(H2 O) HELIX 1 1 GLU A 133 GLY A 138 1 6 SHEET 1 AA 9 THR A 2 LEU A 8 0 SHEET 2 AA 9 GLN A 15 GLN A 22 -1 O GLY A 16 N LEU A 8 SHEET 3 AA 9 VAL A 29 LYS A 36 -1 O LYS A 30 N GLU A 21 SHEET 4 AA 9 ALA A 95 ASP A 101 -1 O ALA A 95 N ILE A 35 SHEET 5 AA 9 ASP A 83 ALA A 89 -1 O THR A 88 N ASP A 96 SHEET 6 AA 9 GLY A 41 HIS A 48 -1 O GLY A 41 N ALA A 89 SHEET 7 AA 9 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 8 AA 9 ARG A 143 ILE A 151 -1 N LEU A 144 O VAL A 119 SHEET 9 AA 9 THR A 2 LEU A 8 -1 O VAL A 5 N GLY A 150 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.50 LINK O ALA A 1 ZN ZN A 156 4445 1555 2.31 LINK ND1 HIS A 46 CU CU A 154 1555 1555 2.14 LINK NE2 HIS A 48 CU CU A 154 1555 1555 2.05 LINK OE2 GLU A 50 ZN ZN A 157 1555 1555 1.93 LINK OE2 GLU A 51 ZN ZN A 156 1555 1555 1.98 LINK OD2 ASP A 52 ZN ZN A 157 1555 1555 1.93 LINK ND1 HIS A 63 ZN ZN A 155 1555 1555 2.00 LINK ND1 HIS A 71 ZN ZN A 155 1555 1555 2.05 LINK ND1 HIS A 80 ZN ZN A 155 1555 1555 2.04 LINK OD1 ASP A 83 ZN ZN A 155 1555 1555 2.00 LINK OD2 ASP A 90 ZN ZN A 157 1455 1555 1.96 LINK OD1 ASP A 92 ZN ZN A 157 1455 1555 1.90 LINK OD2 ASP A 96 ZN ZN A 156 1455 1555 1.95 LINK NE2 HIS A 110 ZN ZN A 158 1555 1555 1.85 LINK NE2 HIS A 120 CU CU A 154 1555 1555 2.09 LINK OXT GLN A 153 ZN ZN A 158 4445 1555 2.45 LINK O GLN A 153 ZN ZN A 158 4445 1555 2.03 LINK CU CU A 154 O HOH A2063 1555 1555 2.36 LINK ZN ZN A 156 O HOH A2153 1555 1555 2.05 SITE 1 AC1 5 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 2 AC1 5 HOH A2063 SITE 1 AC2 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC3 4 ALA A 1 GLU A 51 ASP A 96 HOH A2153 SITE 1 AC4 4 GLU A 50 ASP A 52 ASP A 90 ASP A 92 SITE 1 AC5 2 HIS A 110 GLN A 153 CRYST1 35.160 49.480 80.440 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028441 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012432 0.00000