HEADER OXIDOREDUCTASE 07-JUL-10 2XJL TITLE MONOMERIC HUMAN CU,ZN SUPEROXIDE DISMUTASE WITHOUT CU LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CU, ZN SUPEROXIDE DISMUTASE; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE, CU/ZN SOD1, METAL-BINDING, NEURODEGENERATION EXPDTA X-RAY DIFFRACTION AUTHOR K.SARABOJI,L.LEINARTAITE,A.NORDLUND,M.OLIVEBERG,D.T.LOGAN REVDAT 4 01-MAY-24 2XJL 1 REMARK LINK REVDAT 3 17-JAN-18 2XJL 1 REMARK REVDAT 2 20-OCT-10 2XJL 1 JRNL REMARK REVDAT 1 01-SEP-10 2XJL 0 JRNL AUTH L.LEINARTAITE,K.SARABOJI,A.NORDLUND,D.T.LOGAN,M.OLIVEBERG JRNL TITL FOLDING CATALYSIS BY TRANSIENT COORDINATION OF ZN2+ TO THE JRNL TITL 2 CU LIGANDS OF THE ALS-ASSOCIATED ENZYME CU/ZN SUPEROXIDE JRNL TITL 3 DISMUTASE 1. JRNL REF J.AM.CHEM.SOC. V. 132 13495 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20822138 JRNL DOI 10.1021/JA1057136 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.NORDLUND,L.LEINARTAITE,K.SARABOJI,C.AISENBREY,G.GROBNER, REMARK 1 AUTH 2 P.ZETTERSTROM,J.DANIELSSON,D.T.LOGAN,M.OLIVEBERG REMARK 1 TITL FUNCTIONAL FEATURES CAUSE MISFOLDING OF THE ALS-PROVOKING REMARK 1 TITL 2 ENZYME SOD1. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 106 9667 2009 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 19497878 REMARK 1 DOI 10.1073/PNAS.0812046106 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 19519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1055 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.018 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1178 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 781 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1586 ; 1.258 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1939 ; 1.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 6.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;36.599 ;26.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 202 ;13.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;14.931 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 177 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1353 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 203 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 776 ; 0.991 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 335 ; 0.249 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1238 ; 1.674 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 402 ; 2.455 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 348 ; 3.736 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1959 ; 0.946 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4916 -3.4731 10.1206 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: 0.0051 REMARK 3 T33: 0.0056 T12: 0.0018 REMARK 3 T13: 0.0026 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.9008 L22: 0.7031 REMARK 3 L33: 1.2400 L12: -0.1415 REMARK 3 L13: -0.2992 L23: 0.2801 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0480 S13: 0.0498 REMARK 3 S21: 0.0333 S22: 0.0093 S23: -0.0114 REMARK 3 S31: 0.0119 S32: 0.0477 S33: -0.0202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. TLS ADDED WITH U VALUES. ATOM RECORD CONTAINS SUM OF REMARK 3 TLS AND RESIDUAL B FACTORS. REMARK 4 REMARK 4 2XJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9085 REMARK 200 MONOCHROMATOR : BENT SI (220) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MONOMERIC CU,ZN SOD1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 6000, 0.1M SODIUM ACETATE (PH REMARK 280 5.0), 0.01M ZNCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.38000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.38000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 7 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 47 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 49 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, PHE 51 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLY 52 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 112 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 121 TO SER REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 148 CG1 - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 52 -77.57 -106.65 REMARK 500 ALA A 55 -74.48 -73.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 156 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 1 O REMARK 620 2 GLU A 51 OE2 91.1 REMARK 620 3 ASP A 96 OD2 86.1 96.5 REMARK 620 4 HOH A2143 O 162.7 106.2 92.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 157 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE2 REMARK 620 2 ASP A 52 OD2 99.7 REMARK 620 3 ASP A 52 OD2 96.9 3.3 REMARK 620 4 ASP A 90 OD2 110.6 103.2 102.8 REMARK 620 5 ASP A 92 OD1 117.8 118.0 121.0 106.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 161 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 55 O REMARK 620 2 CYS A 146 O 103.9 REMARK 620 3 HOH A2007 O 131.1 78.8 REMARK 620 4 HOH A2057 O 85.3 132.9 128.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 104.5 REMARK 620 3 HIS A 80 ND1 113.2 122.1 REMARK 620 4 ASP A 83 OD1 102.4 97.5 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 158 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 110 NE2 REMARK 620 2 GLN A 153 O 137.4 REMARK 620 3 GLN A 153 OXT 93.2 55.1 REMARK 620 4 HOH A2144 O 111.4 105.8 154.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 160 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2130 O REMARK 620 2 HOH A2131 O 136.4 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZ6 RELATED DB: PDB REMARK 900 G93A SOD1 MUTANT COMPLEXED WITH QUINAZOLINE. REMARK 900 RELATED ID: 1PTZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN CU, ZN SUPEROXIDE DISMUTASE,FAMILIAL REMARK 900 AMYOTROPHIC LATERAL SCLEROSIS (FALS) MUTANT H43R REMARK 900 RELATED ID: 1OEZ RELATED DB: PDB REMARK 900 ZN HIS46ARG MUTANT OF HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1AZV RELATED DB: PDB REMARK 900 FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN) REMARK 900 RELATED ID: 1HL4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF APO TYPE HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2WYZ RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH UMP REMARK 900 RELATED ID: 2VR6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.3 A RESOLUTION REMARK 900 RELATED ID: 1OZU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAMILIAL ALS MUTANT S134N OF HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE ( CUZNSOD) TO 1.3A RESOLUTION REMARK 900 RELATED ID: 2C9V RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2WZ5 RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH L-METHIONINE . REMARK 900 RELATED ID: 1PU0 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CU,ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1FUN RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH LYS 136 REPLACED BY GLU, CYS 6 REMARK 900 REPLACED BY ALA AND CYS 111 REPLACED BY SER (K136E, C6A, C111S) REMARK 900 RELATED ID: 1SOS RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA AND CYS 111 REMARK 900 REPLACED BY SER (C6A, C111S) REMARK 900 RELATED ID: 1N19 RELATED DB: PDB REMARK 900 STRUCTURE OF THE HSOD A4V MUTANT REMARK 900 RELATED ID: 1P1V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FALS-ASSOCIATED HUMAN COPPER-ZINCSUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) MUTANT D125H TO 1.4A REMARK 900 RELATED ID: 2WZ0 RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH ANILINE. REMARK 900 RELATED ID: 2WKO RELATED DB: PDB REMARK 900 STRUCTURE OF METAL LOADED PATHOGENIC SOD1 MUTANT G93A. REMARK 900 RELATED ID: 1L3N RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED DIMERIC COPPER ZINC SOD:THE REMARK 900 STRUCTURAL EFFECTS OF DIMERIZATION REMARK 900 RELATED ID: 1UXL RELATED DB: PDB REMARK 900 I113T MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 2AF2 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DISULFIDE REDUCED AND COPPER DEPLETEDHUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2VR8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.36 A RESOLUTION REMARK 900 RELATED ID: 1RK7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF APO CU,ZN SUPEROXIDE DISMUTASE: ROLEOF METAL REMARK 900 IONS IN PROTEIN FOLDING REMARK 900 RELATED ID: 2VR7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.58 A RESOLUTION REMARK 900 RELATED ID: 2C9S RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF ZN- ZN HUMAN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 2V0A RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION CRYSTAL STRUCTURE OF HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 4SOD RELATED DB: PDB REMARK 900 CU,ZN SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA AND REMARK 900 CYS 111 REPLACED BY SER (C6A,C111S) WITH AN 18-RESIDUE HEPARIN- REMARK 900 BINDING PEPTIDE FUSED TO THE C- TERMINUS (THEORETICAL MODEL) REMARK 900 RELATED ID: 1MFM RELATED DB: PDB REMARK 900 MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2WYT RELATED DB: PDB REMARK 900 1.0 A RESOLUTION STRUCTURE OF L38V SOD1 MUTANT REMARK 900 RELATED ID: 1DSW RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF A MONOMERIC, REDUCED FORM OFHUMAN COPPER, REMARK 900 ZINC SUPEROXIDE DISMUTASE BEARING THE SAMECHARGE AS THE NATIVE REMARK 900 PROTEIN REMARK 900 RELATED ID: 1KMG RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF MONOMERIC COPPER- FREE SUPEROXIDEDISMUTASE REMARK 900 RELATED ID: 1OZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-H46R FAMILIAL ALS MUTANT HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE ( CUZNSOD) TO 2.5A RESOLUTION REMARK 900 RELATED ID: 1N18 RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF HUMAN SUPEROXIDE DISMUTASE, C6A,C111S REMARK 900 RELATED ID: 1BA9 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED MONOMERIC SUPEROXIDE DISMUTASE, REMARK 900 NMR, 36 STRUCTURES REMARK 900 RELATED ID: 2C9U RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF AS- ISOLATED CU-ZN HUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1HL5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HOLO TYPE HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1SPD RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1UXM RELATED DB: PDB REMARK 900 A4V MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 2XJK RELATED DB: PDB REMARK 900 MONOMERIC HUMAN CU,ZN SUPEROXIDE DISMUTASE DBREF 2XJL A 1 153 UNP P00441 SODC_HUMAN 2 154 SEQADV 2XJL ALA A 6 UNP P00441 CYS 7 ENGINEERED MUTATION SEQADV 2XJL SER A 46 UNP P00441 HIS 47 ENGINEERED MUTATION SEQADV 2XJL SER A 48 UNP P00441 HIS 49 ENGINEERED MUTATION SEQADV 2XJL GLU A 50 UNP P00441 PHE 51 ENGINEERED MUTATION SEQADV 2XJL GLU A 51 UNP P00441 GLY 52 ENGINEERED MUTATION SEQADV 2XJL ALA A 111 UNP P00441 CYS 112 ENGINEERED MUTATION SEQADV 2XJL SER A 120 UNP P00441 HIS 121 ENGINEERED MUTATION SEQRES 1 A 153 ALA THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE SER VAL SER GLU GLU GLU ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS ALA ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL SER GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET ZN A 155 1 HET ZN A 156 1 HET ZN A 157 1 HET ZN A 158 1 HET PEG A 159 7 HET NA A 160 1 HET NA A 161 1 HET ACT A 162 4 HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM NA SODIUM ION HETNAM ACT ACETATE ION FORMUL 2 ZN 4(ZN 2+) FORMUL 6 PEG C4 H10 O3 FORMUL 7 NA 2(NA 1+) FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 HOH *145(H2 O) HELIX 1 1 GLU A 133 GLY A 138 1 6 SHEET 1 AA 9 THR A 2 LYS A 9 0 SHEET 2 AA 9 GLN A 15 GLN A 22 -1 O GLY A 16 N LEU A 8 SHEET 3 AA 9 VAL A 29 LYS A 36 -1 O LYS A 30 N GLU A 21 SHEET 4 AA 9 ALA A 95 ASP A 101 -1 O ALA A 95 N ILE A 35 SHEET 5 AA 9 ASP A 83 ALA A 89 -1 O THR A 88 N ASP A 96 SHEET 6 AA 9 GLY A 41 SER A 48 -1 O GLY A 41 N ALA A 89 SHEET 7 AA 9 THR A 116 SER A 120 -1 O THR A 116 N SER A 48 SHEET 8 AA 9 ARG A 143 ILE A 151 -1 N LEU A 144 O VAL A 119 SHEET 9 AA 9 THR A 2 LYS A 9 -1 O VAL A 5 N GLY A 150 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.97 LINK O ALA A 1 ZN ZN A 156 4445 1555 2.29 LINK OE2 GLU A 50 ZN ZN A 157 1555 1555 1.92 LINK OE2 GLU A 51 ZN ZN A 156 1555 1555 1.97 LINK OD2BASP A 52 ZN ZN A 157 1555 1555 1.89 LINK OD2AASP A 52 ZN ZN A 157 1555 1555 2.01 LINK O AALA A 55 NA NA A 161 1555 1555 2.22 LINK ND1 HIS A 63 ZN ZN A 155 1555 1555 2.03 LINK ND1 HIS A 71 ZN ZN A 155 1555 1555 2.04 LINK ND1 HIS A 80 ZN ZN A 155 1555 1555 2.05 LINK OD1 ASP A 83 ZN ZN A 155 1555 1555 1.94 LINK OD2 ASP A 90 ZN ZN A 157 1455 1555 1.98 LINK OD1 ASP A 92 ZN ZN A 157 1455 1555 1.88 LINK OD2 ASP A 96 ZN ZN A 156 1455 1555 1.93 LINK NE2 HIS A 110 ZN ZN A 158 1555 1555 1.96 LINK O CYS A 146 NA NA A 161 1555 1555 2.68 LINK O GLN A 153 ZN ZN A 158 4445 1555 1.93 LINK OXT GLN A 153 ZN ZN A 158 4445 1555 2.51 LINK ZN ZN A 156 O HOH A2143 1555 1555 2.07 LINK ZN ZN A 158 O HOH A2144 1555 1555 2.16 LINK NA NA A 160 O HOH A2130 1555 1555 2.84 LINK NA NA A 160 O HOH A2131 1555 1555 2.96 LINK NA NA A 161 O HOH A2007 1555 1555 3.00 LINK NA NA A 161 O HOH A2057 1555 1555 3.03 SITE 1 AC1 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC2 4 ALA A 1 GLU A 51 ASP A 96 HOH A2143 SITE 1 AC3 4 GLU A 50 ASP A 52 ASP A 90 ASP A 92 SITE 1 AC4 3 HIS A 110 GLN A 153 HOH A2144 SITE 1 AC5 8 LEU A 67 ASP A 76 GLU A 77 ARG A 79 SITE 2 AC5 8 VAL A 103 HOH A2074 HOH A2078 HOH A2145 SITE 1 AC6 2 HOH A2130 HOH A2131 SITE 1 AC7 5 LYS A 9 ALA A 55 CYS A 146 HOH A2007 SITE 2 AC7 5 HOH A2057 SITE 1 AC8 6 LYS A 30 ILE A 113 VAL A 148 GLY A 150 SITE 2 AC8 6 ILE A 151 HOH A2032 CRYST1 34.760 49.220 80.460 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028769 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012429 0.00000