data_2XO0 # _entry.id 2XO0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2XO0 pdb_00002xo0 10.2210/pdb2xo0/pdb PDBE EBI-44996 ? ? WWPDB D_1290044996 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2G9C unspecified 'MODIFIED PYRIMIDINES SPECIFICALLY BIND THE PURINE RIBOSWITCH' PDB 2XNW unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO-TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING' PDB 2XNZ unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO ACETOGUANAMINE IDENTIFIED BY VIRTUAL SCREENING' PDB 2XO1 unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO N6-METHYLADENINE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XO0 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-08-09 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Daldrop, P.' 1 ? 'Reyes, F.E.' 2 ? 'Robinson, D.A.' 3 ? 'Hammond, C.M.' 4 ? 'Lilley, D.M.J.' 5 ? 'Batey, R.T.' 6 ? 'Brenk, R.' 7 ? # _citation.id primary _citation.title 'Novel ligands for a purine riboswitch discovered by RNA-ligand docking.' _citation.journal_abbrev 'Chem. Biol.' _citation.journal_volume 18 _citation.page_first 324 _citation.page_last 335 _citation.year 2011 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1879-1301 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21439477 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2010.12.020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Daldrop, P.' 1 ? primary 'Reyes, F.E.' 2 ? primary 'Robinson, D.A.' 3 ? primary 'Hammond, C.M.' 4 ? primary 'Lilley, D.M.' 5 ? primary 'Batey, R.T.' 6 ? primary 'Brenk, R.' 7 ? # _cell.entry_id 2XO0 _cell.length_a 130.923 _cell.length_b 34.940 _cell.length_c 42.074 _cell.angle_alpha 90.00 _cell.angle_beta 90.11 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XO0 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch' 21507.768 1 ? ? 'APTAMER DOMAIN, RESIDUES 15-81' ? 2 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 6 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 5 ? ? ? ? 5 non-polymer syn 1,3,5-TRIAZINE-2,4-DIAMINE 111.105 1 ? ? ? ? 6 water nat water 18.015 151 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 U n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'BACILLUS SUBTILIS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1423 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2XO0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 2XO0 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XO0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2XO0 _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 ZZS non-polymer . 1,3,5-TRIAZINE-2,4-DIAMINE ? 'C3 H5 N5' 111.105 # _exptl.entry_id 2XO0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.1 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10MM K-HEPES PH 7.5, 25% PEG 3000, 12MM COHEX, 800MM AMMONIUM ACETATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-06-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93344 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.93344 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XO0 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 65.51 _reflns.d_resolution_high 1.70 _reflns.number_obs 21077 _reflns.number_all ? _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.80 _reflns.B_iso_Wilson_estimate 0.0 _reflns.pdbx_redundancy 3.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 93.5 _reflns_shell.Rmerge_I_obs 0.39 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.10 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XO0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19531 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 65.46 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 96.80 _refine.ls_R_factor_obs 0.21891 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21605 _refine.ls_R_factor_R_free 0.27082 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1054 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 29.103 _refine.aniso_B[1][1] 2.07 _refine.aniso_B[2][2] -1.74 _refine.aniso_B[3][3] -0.33 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.44 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.U VALUES REFINED INDIVIDUALLY. RESIDUES 15 AND 81 ARE DISORDERED AND NOT MODELED.' _refine.pdbx_starting_model 'PDB ENTRY 2G9C' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.130 _refine.pdbx_overall_ESU_R_Free 0.134 _refine.overall_SU_ML 0.092 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.869 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1363 _refine_hist.pdbx_number_atoms_ligand 63 _refine_hist.number_atoms_solvent 151 _refine_hist.number_atoms_total 1577 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 65.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 1569 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.973 3.000 ? 2447 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 320 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 682 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.249 1.500 ? 6 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.360 2.000 ? 4 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.796 3.000 ? 1563 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.470 4.500 ? 2443 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 1425 _refine_ls_shell.R_factor_R_work 0.284 _refine_ls_shell.percent_reflns_obs 94.81 _refine_ls_shell.R_factor_R_free 0.314 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XO0 _struct.title 'xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XO0 _struct_keywords.pdbx_keywords RNA _struct_keywords.text RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 5 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 37 "O2'" ? ? ? 1_555 J K . K ? ? A U 51 A K 109 1_555 ? ? ? ? ? ? ? 3.444 ? ? metalc2 metalc ? ? A U 60 "O2'" ? ? ? 1_555 J K . K ? ? A U 74 A K 109 1_555 ? ? ? ? ? ? ? 3.379 ? ? metalc3 metalc ? ? I K . K ? ? ? 1_555 P HOH . O ? ? A K 108 A HOH 328 1_555 ? ? ? ? ? ? ? 2.535 ? ? hydrog1 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog15 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog16 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 O2 ? ? ? 1_555 A A 30 N6 ? ? A C 26 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog34 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog35 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N2 ? ? A U 34 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog36 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog37 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog38 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog39 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog40 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog47 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog48 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog52 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog53 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ACT A 1081' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ACT A 1082' AC3 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE NCO A 1083' AC4 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE NCO A 1084' AC5 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE NCO A 1085' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NCO A 1086' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE NCO A 1087' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE K A 1088' AC9 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE K A 1089' BC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE ZZS A 1090' BC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NCO A 1091' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 C A 14 ? C A 28 . ? 1_555 ? 2 AC1 5 G A 15 ? G A 29 . ? 1_555 ? 3 AC1 5 A A 52 ? A A 66 . ? 4_444 ? 4 AC1 5 NCO D . ? NCO A 103 . ? 4_444 ? 5 AC1 5 HOH P . ? HOH A 255 . ? 4_444 ? 6 AC2 7 G A 18 ? G A 32 . ? 1_555 ? 7 AC2 7 A A 19 ? A A 33 . ? 1_555 ? 8 AC2 7 G A 24 ? G A 38 . ? 1_555 ? 9 AC2 7 C A 25 ? C A 39 . ? 1_555 ? 10 AC2 7 A A 52 ? A A 66 . ? 1_555 ? 11 AC2 7 U A 53 ? U A 67 . ? 1_555 ? 12 AC2 7 HOH P . ? HOH A 306 . ? 1_555 ? 13 AC3 12 G A 13 ? G A 27 . ? 1_555 ? 14 AC3 12 C A 14 ? C A 28 . ? 1_555 ? 15 AC3 12 G A 15 ? G A 29 . ? 4_454 ? 16 AC3 12 U A 16 ? U A 30 . ? 4_454 ? 17 AC3 12 A A 52 ? A A 66 . ? 1_555 ? 18 AC3 12 U A 53 ? U A 67 . ? 1_555 ? 19 AC3 12 ACT B . ? ACT A 101 . ? 4_454 ? 20 AC3 12 HOH P . ? HOH A 320 . ? 4_454 ? 21 AC3 12 HOH P . ? HOH A 255 . ? 1_555 ? 22 AC3 12 HOH P . ? HOH A 305 . ? 1_555 ? 23 AC3 12 HOH P . ? HOH A 291 . ? 1_555 ? 24 AC3 12 HOH P . ? HOH A 329 . ? 1_555 ? 25 AC4 9 C A 25 ? C A 39 . ? 1_555 ? 26 AC4 9 G A 41 ? G A 55 . ? 1_555 ? 27 AC4 9 G A 42 ? G A 56 . ? 1_555 ? 28 AC4 9 G A 43 ? G A 57 . ? 1_555 ? 29 AC4 9 G A 54 ? G A 68 . ? 1_555 ? 30 AC4 9 U A 55 ? U A 69 . ? 1_555 ? 31 AC4 9 HOH P . ? HOH A 313 . ? 1_555 ? 32 AC4 9 HOH P . ? HOH A 293 . ? 1_555 ? 33 AC4 9 HOH P . ? HOH A 227 . ? 1_555 ? 34 AC5 8 U A 16 ? U A 30 . ? 1_555 ? 35 AC5 8 G A 17 ? G A 31 . ? 1_555 ? 36 AC5 8 G A 18 ? G A 32 . ? 1_555 ? 37 AC5 8 A A 51 ? A A 65 . ? 1_555 ? 38 AC5 8 A A 52 ? A A 66 . ? 1_555 ? 39 AC5 8 HOH P . ? HOH A 288 . ? 1_555 ? 40 AC5 8 HOH P . ? HOH A 237 . ? 1_555 ? 41 AC5 8 HOH P . ? HOH A 235 . ? 1_555 ? 42 AC6 4 G A 23 ? G A 37 . ? 1_555 ? 43 AC6 4 G A 24 ? G A 38 . ? 1_555 ? 44 AC6 4 G A 43 ? G A 57 . ? 1_555 ? 45 AC6 4 HOH P . ? HOH A 254 . ? 1_555 ? 46 AC7 1 A A 10 ? A A 24 . ? 1_555 ? 47 AC8 3 C A 27 ? C A 41 . ? 1_555 ? 48 AC8 3 C A 40 ? C A 54 . ? 1_555 ? 49 AC8 3 HOH P . ? HOH A 328 . ? 1_555 ? 50 AC9 3 U A 37 ? U A 51 . ? 1_555 ? 51 AC9 3 U A 60 ? U A 74 . ? 1_555 ? 52 AC9 3 U A 61 ? U A 75 . ? 1_555 ? 53 BC1 9 A A 7 ? A A 21 . ? 1_555 ? 54 BC1 9 U A 8 ? U A 22 . ? 1_555 ? 55 BC1 9 U A 33 ? U A 47 . ? 1_555 ? 56 BC1 9 C A 36 ? C A 50 . ? 1_555 ? 57 BC1 9 U A 37 ? U A 51 . ? 1_555 ? 58 BC1 9 A A 38 ? A A 52 . ? 1_555 ? 59 BC1 9 U A 60 ? U A 74 . ? 1_555 ? 60 BC1 9 U A 61 ? U A 75 . ? 1_555 ? 61 BC1 9 HOH P . ? HOH A 243 . ? 1_555 ? 62 BC2 3 G A 42 ? G A 56 . ? 4_445 ? 63 BC2 3 HOH P . ? HOH A 318 . ? 1_555 ? 64 BC2 3 HOH P . ? HOH A 244 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XO0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XO0 _atom_sites.fract_transf_matrix[1][1] 0.007638 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000015 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028620 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023768 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 ? ? ? A . n A 1 2 G 2 16 16 G G A . n A 1 3 A 3 17 17 A A A . n A 1 4 C 4 18 18 C C A . n A 1 5 A 5 19 19 A A A . n A 1 6 U 6 20 20 U U A . n A 1 7 A 7 21 21 A A A . n A 1 8 U 8 22 22 U U A . n A 1 9 A 9 23 23 A A A . n A 1 10 A 10 24 24 A A A . n A 1 11 U 11 25 25 U U A . n A 1 12 C 12 26 26 C C A . n A 1 13 G 13 27 27 G G A . n A 1 14 C 14 28 28 C C A . n A 1 15 G 15 29 29 G G A . n A 1 16 U 16 30 30 U U A . n A 1 17 G 17 31 31 G G A . n A 1 18 G 18 32 32 G G A . n A 1 19 A 19 33 33 A A A . n A 1 20 U 20 34 34 U U A . n A 1 21 A 21 35 35 A A A . n A 1 22 U 22 36 36 U U A . n A 1 23 G 23 37 37 G G A . n A 1 24 G 24 38 38 G G A . n A 1 25 C 25 39 39 C C A . n A 1 26 A 26 40 40 A A A . n A 1 27 C 27 41 41 C C A . n A 1 28 G 28 42 42 G G A . n A 1 29 C 29 43 43 C C A . n A 1 30 A 30 44 44 A A A . n A 1 31 A 31 45 45 A A A . n A 1 32 G 32 46 46 G G A . n A 1 33 U 33 47 47 U U A . n A 1 34 U 34 48 48 U U A . n A 1 35 U 35 49 49 U U A . n A 1 36 C 36 50 50 C C A . n A 1 37 U 37 51 51 U U A . n A 1 38 A 38 52 52 A A A . n A 1 39 C 39 53 53 C C A . n A 1 40 C 40 54 54 C C A . n A 1 41 G 41 55 55 G G A . n A 1 42 G 42 56 56 G G A . n A 1 43 G 43 57 57 G G A . n A 1 44 C 44 58 58 C C A . n A 1 45 A 45 59 59 A A A . n A 1 46 C 46 60 60 C C A . n A 1 47 C 47 61 61 C C A . n A 1 48 G 48 62 62 G G A . n A 1 49 U 49 63 63 U U A . n A 1 50 A 50 64 64 A A A . n A 1 51 A 51 65 65 A A A . n A 1 52 A 52 66 66 A A A . n A 1 53 U 53 67 67 U U A . n A 1 54 G 54 68 68 G G A . n A 1 55 U 55 69 69 U U A . n A 1 56 C 56 70 70 C C A . n A 1 57 C 57 71 71 C C A . n A 1 58 G 58 72 72 G G A . n A 1 59 A 59 73 73 A A A . n A 1 60 U 60 74 74 U U A . n A 1 61 U 61 75 75 U U A . n A 1 62 A 62 76 76 A A A . n A 1 63 U 63 77 77 U U A . n A 1 64 G 64 78 78 G G A . n A 1 65 U 65 79 79 U U A . n A 1 66 C 66 80 80 C C A . n A 1 67 C 67 81 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 101 1081 ACT ACT A . C 2 ACT 1 102 1082 ACT ACT A . D 3 NCO 1 103 1083 NCO NCO A . E 3 NCO 1 104 1084 NCO NCO A . F 3 NCO 1 105 1085 NCO NCO A . G 3 NCO 1 106 1086 NCO NCO A . H 3 NCO 1 107 1087 NCO NCO A . I 4 K 1 108 1088 K K A . J 4 K 1 109 1089 K K A . K 5 ZZS 1 110 1090 ZZS ZZS A . L 3 NCO 1 111 1091 NCO NCO A . M 4 K 1 112 1092 K K A . N 4 K 1 113 1093 K K A . O 4 K 1 114 1094 K K A . P 6 HOH 1 201 2022 HOH HOH A . P 6 HOH 2 202 2046 HOH HOH A . P 6 HOH 3 203 2117 HOH HOH A . P 6 HOH 4 204 2021 HOH HOH A . P 6 HOH 5 205 2023 HOH HOH A . P 6 HOH 6 206 2109 HOH HOH A . P 6 HOH 7 207 2092 HOH HOH A . P 6 HOH 8 208 2091 HOH HOH A . P 6 HOH 9 209 2054 HOH HOH A . P 6 HOH 10 210 2006 HOH HOH A . P 6 HOH 11 211 2143 HOH HOH A . P 6 HOH 12 212 2065 HOH HOH A . P 6 HOH 13 213 2083 HOH HOH A . P 6 HOH 14 214 2033 HOH HOH A . P 6 HOH 15 215 2011 HOH HOH A . P 6 HOH 16 216 2124 HOH HOH A . P 6 HOH 17 217 2042 HOH HOH A . P 6 HOH 18 218 2026 HOH HOH A . P 6 HOH 19 219 2013 HOH HOH A . P 6 HOH 20 220 2066 HOH HOH A . P 6 HOH 21 221 2123 HOH HOH A . P 6 HOH 22 222 2059 HOH HOH A . P 6 HOH 23 223 2081 HOH HOH A . P 6 HOH 24 224 2052 HOH HOH A . P 6 HOH 25 225 2007 HOH HOH A . P 6 HOH 26 226 2034 HOH HOH A . P 6 HOH 27 227 2115 HOH HOH A . P 6 HOH 28 228 2112 HOH HOH A . P 6 HOH 29 229 2141 HOH HOH A . P 6 HOH 30 230 2129 HOH HOH A . P 6 HOH 31 231 2018 HOH HOH A . P 6 HOH 32 232 2036 HOH HOH A . P 6 HOH 33 233 2028 HOH HOH A . P 6 HOH 34 234 2055 HOH HOH A . P 6 HOH 35 235 2121 HOH HOH A . P 6 HOH 36 236 2061 HOH HOH A . P 6 HOH 37 237 2037 HOH HOH A . P 6 HOH 38 238 2088 HOH HOH A . P 6 HOH 39 239 2029 HOH HOH A . P 6 HOH 40 240 2140 HOH HOH A . P 6 HOH 41 241 2074 HOH HOH A . P 6 HOH 42 242 2058 HOH HOH A . P 6 HOH 43 243 2149 HOH HOH A . P 6 HOH 44 244 2002 HOH HOH A . P 6 HOH 45 245 2144 HOH HOH A . P 6 HOH 46 246 2116 HOH HOH A . P 6 HOH 47 247 2104 HOH HOH A . P 6 HOH 48 248 2019 HOH HOH A . P 6 HOH 49 249 2113 HOH HOH A . P 6 HOH 50 250 2017 HOH HOH A . P 6 HOH 51 251 2069 HOH HOH A . P 6 HOH 52 252 2105 HOH HOH A . P 6 HOH 53 253 2108 HOH HOH A . P 6 HOH 54 254 2056 HOH HOH A . P 6 HOH 55 255 2120 HOH HOH A . P 6 HOH 56 256 2087 HOH HOH A . P 6 HOH 57 257 2114 HOH HOH A . P 6 HOH 58 258 2062 HOH HOH A . P 6 HOH 59 259 2126 HOH HOH A . P 6 HOH 60 260 2103 HOH HOH A . P 6 HOH 61 261 2014 HOH HOH A . P 6 HOH 62 262 2048 HOH HOH A . P 6 HOH 63 263 2041 HOH HOH A . P 6 HOH 64 264 2100 HOH HOH A . P 6 HOH 65 265 2051 HOH HOH A . P 6 HOH 66 266 2060 HOH HOH A . P 6 HOH 67 267 2027 HOH HOH A . P 6 HOH 68 268 2016 HOH HOH A . P 6 HOH 69 269 2107 HOH HOH A . P 6 HOH 70 270 2035 HOH HOH A . P 6 HOH 71 271 2095 HOH HOH A . P 6 HOH 72 272 2119 HOH HOH A . P 6 HOH 73 273 2132 HOH HOH A . P 6 HOH 74 274 2073 HOH HOH A . P 6 HOH 75 275 2131 HOH HOH A . P 6 HOH 76 276 2098 HOH HOH A . P 6 HOH 77 277 2084 HOH HOH A . P 6 HOH 78 278 2099 HOH HOH A . P 6 HOH 79 279 2010 HOH HOH A . P 6 HOH 80 280 2064 HOH HOH A . P 6 HOH 81 281 2057 HOH HOH A . P 6 HOH 82 282 2076 HOH HOH A . P 6 HOH 83 283 2063 HOH HOH A . P 6 HOH 84 284 2101 HOH HOH A . P 6 HOH 85 285 2085 HOH HOH A . P 6 HOH 86 286 2079 HOH HOH A . P 6 HOH 87 287 2134 HOH HOH A . P 6 HOH 88 288 2032 HOH HOH A . P 6 HOH 89 289 2077 HOH HOH A . P 6 HOH 90 290 2067 HOH HOH A . P 6 HOH 91 291 2146 HOH HOH A . P 6 HOH 92 292 2039 HOH HOH A . P 6 HOH 93 293 2097 HOH HOH A . P 6 HOH 94 294 2102 HOH HOH A . P 6 HOH 95 295 2045 HOH HOH A . P 6 HOH 96 296 2038 HOH HOH A . P 6 HOH 97 297 2015 HOH HOH A . P 6 HOH 98 298 2139 HOH HOH A . P 6 HOH 99 299 2049 HOH HOH A . P 6 HOH 100 300 2089 HOH HOH A . P 6 HOH 101 301 2075 HOH HOH A . P 6 HOH 102 302 2110 HOH HOH A . P 6 HOH 103 303 2050 HOH HOH A . P 6 HOH 104 304 2031 HOH HOH A . P 6 HOH 105 305 2125 HOH HOH A . P 6 HOH 106 306 2122 HOH HOH A . P 6 HOH 107 307 2096 HOH HOH A . P 6 HOH 108 308 2078 HOH HOH A . P 6 HOH 109 309 2070 HOH HOH A . P 6 HOH 110 310 2080 HOH HOH A . P 6 HOH 111 311 2005 HOH HOH A . P 6 HOH 112 312 2082 HOH HOH A . P 6 HOH 113 313 2090 HOH HOH A . P 6 HOH 114 314 2142 HOH HOH A . P 6 HOH 115 315 2047 HOH HOH A . P 6 HOH 116 316 2138 HOH HOH A . P 6 HOH 117 317 2136 HOH HOH A . P 6 HOH 118 318 2040 HOH HOH A . P 6 HOH 119 319 2001 HOH HOH A . P 6 HOH 120 320 2030 HOH HOH A . P 6 HOH 121 321 2012 HOH HOH A . P 6 HOH 122 322 2025 HOH HOH A . P 6 HOH 123 323 2128 HOH HOH A . P 6 HOH 124 324 2024 HOH HOH A . P 6 HOH 125 325 2020 HOH HOH A . P 6 HOH 126 326 2068 HOH HOH A . P 6 HOH 127 327 2145 HOH HOH A . P 6 HOH 128 328 2072 HOH HOH A . P 6 HOH 129 329 2147 HOH HOH A . P 6 HOH 130 330 2093 HOH HOH A . P 6 HOH 131 331 2133 HOH HOH A . P 6 HOH 132 332 2135 HOH HOH A . P 6 HOH 133 333 2044 HOH HOH A . P 6 HOH 134 334 2094 HOH HOH A . P 6 HOH 135 335 2071 HOH HOH A . P 6 HOH 136 336 2130 HOH HOH A . P 6 HOH 137 337 2043 HOH HOH A . P 6 HOH 138 338 2106 HOH HOH A . P 6 HOH 139 339 2148 HOH HOH A . P 6 HOH 140 340 2053 HOH HOH A . P 6 HOH 141 341 2118 HOH HOH A . P 6 HOH 142 342 2086 HOH HOH A . P 6 HOH 143 343 2137 HOH HOH A . P 6 HOH 144 344 2111 HOH HOH A . P 6 HOH 145 345 2127 HOH HOH A . P 6 HOH 146 346 2004 HOH HOH A . P 6 HOH 147 347 2002 HOH HOH A . P 6 HOH 148 348 2001 HOH HOH A . P 6 HOH 149 349 2003 HOH HOH A . P 6 HOH 150 350 2009 HOH HOH A . P 6 HOH 151 351 2008 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id "O2'" _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id U _pdbx_struct_conn_angle.ptnr1_label_seq_id 37 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id U _pdbx_struct_conn_angle.ptnr1_auth_seq_id 51 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id K _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id J _pdbx_struct_conn_angle.ptnr2_label_comp_id K _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id K _pdbx_struct_conn_angle.ptnr2_auth_seq_id 109 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id "O2'" _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id U _pdbx_struct_conn_angle.ptnr3_label_seq_id 60 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id U _pdbx_struct_conn_angle.ptnr3_auth_seq_id 74 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 171.3 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-06 2 'Structure model' 1 1 2017-07-12 3 'Structure model' 1 2 2018-06-06 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' Advisory 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' Other 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_struct_conn_angle 2 2 'Structure model' struct_conn 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 3 'Structure model' entity 6 3 'Structure model' struct 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' database_2 10 4 'Structure model' pdbx_database_status 11 4 'Structure model' pdbx_initial_refinement_model 12 4 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 2 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 5 2 'Structure model' '_struct_conn.pdbx_dist_value' 6 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 3 'Structure model' '_citation.journal_abbrev' 19 3 'Structure model' '_citation.journal_id_ISSN' 20 3 'Structure model' '_citation.page_last' 21 3 'Structure model' '_citation.pdbx_database_id_DOI' 22 3 'Structure model' '_citation.title' 23 3 'Structure model' '_citation_author.name' 24 3 'Structure model' '_entity.pdbx_description' 25 3 'Structure model' '_struct.title' 26 4 'Structure model' '_database_2.pdbx_DOI' 27 4 'Structure model' '_database_2.pdbx_database_accession' 28 4 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2XO0 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'RESIDUE 74 C WAS ENGINEERED TO U.' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "O3'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 27 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 233 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 246 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_444 _pdbx_validate_symm_contact.dist 1.92 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A G 27 ? ? "C3'" A G 27 ? ? 1.514 1.427 0.087 0.012 N 2 1 N7 A G 57 ? ? C8 A G 57 ? ? 1.353 1.305 0.048 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A G 27 ? ? "C3'" A G 27 ? ? "C2'" A G 27 ? ? 95.61 102.60 -6.99 1.00 N 2 1 "O3'" A G 31 ? ? P A G 32 ? ? OP2 A G 32 ? ? 117.77 110.50 7.27 1.10 Y 3 1 N1 A U 34 ? ? "C1'" A U 34 ? ? "C2'" A U 34 ? ? 102.19 112.00 -9.81 1.10 N 4 1 "O4'" A U 34 ? ? "C1'" A U 34 ? ? N1 A U 34 ? ? 113.51 108.50 5.01 0.70 N 5 1 "C3'" A U 36 ? ? "O3'" A U 36 ? ? P A G 37 ? ? 129.42 119.70 9.72 1.20 Y 6 1 "O4'" A C 43 ? ? "C1'" A C 43 ? ? N1 A C 43 ? ? 113.46 108.50 4.96 0.70 N 7 1 "O4'" A U 47 ? ? "C1'" A U 47 ? ? N1 A U 47 ? ? 115.63 108.50 7.13 0.70 N 8 1 "O5'" A C 54 ? ? P A C 54 ? ? OP1 A C 54 ? ? 118.23 110.70 7.53 1.20 N 9 1 "C4'" A C 54 ? ? "C3'" A C 54 ? ? "C2'" A C 54 ? ? 96.02 102.60 -6.58 1.00 N 10 1 "O4'" A U 74 ? ? "C1'" A U 74 ? ? N1 A U 74 ? ? 113.22 108.50 4.72 0.70 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A G 16 ? P ? A G 2 P 2 1 Y 1 A G 16 ? OP1 ? A G 2 OP1 3 1 Y 1 A G 16 ? OP2 ? A G 2 OP2 4 1 Y 1 A C 80 ? "C5'" ? A C 66 "C5'" 5 1 Y 1 A C 80 ? "C4'" ? A C 66 "C4'" 6 1 Y 1 A C 80 ? "O4'" ? A C 66 "O4'" 7 1 Y 1 A C 80 ? "C3'" ? A C 66 "C3'" 8 1 Y 1 A C 80 ? "O3'" ? A C 66 "O3'" 9 1 Y 1 A C 80 ? "C2'" ? A C 66 "C2'" 10 1 Y 1 A C 80 ? "O2'" ? A C 66 "O2'" 11 1 Y 1 A C 80 ? "C1'" ? A C 66 "C1'" 12 1 Y 1 A C 80 ? N1 ? A C 66 N1 13 1 Y 1 A C 80 ? C2 ? A C 66 C2 14 1 Y 1 A C 80 ? O2 ? A C 66 O2 15 1 Y 1 A C 80 ? N3 ? A C 66 N3 16 1 Y 1 A C 80 ? C4 ? A C 66 C4 17 1 Y 1 A C 80 ? N4 ? A C 66 N4 18 1 Y 1 A C 80 ? C5 ? A C 66 C5 19 1 Y 1 A C 80 ? C6 ? A C 66 C6 20 1 N 0 A NCO 106 ? N1 ? G NCO ? N1 21 1 N 0 A NCO 106 ? N2 ? G NCO ? N2 22 1 N 0 A NCO 106 ? N3 ? G NCO ? N3 23 1 N 0 A NCO 106 ? N5 ? G NCO ? N5 24 1 N 0 A NCO 107 ? N1 ? H NCO ? N1 25 1 N 0 A NCO 107 ? N2 ? H NCO ? N2 26 1 N 0 A NCO 107 ? N3 ? H NCO ? N3 27 1 N 0 A NCO 107 ? N5 ? H NCO ? N5 28 1 N 0 A NCO 107 ? N6 ? H NCO ? N6 29 1 N 0 A NCO 111 ? N2 ? L NCO ? N2 30 1 N 0 A NCO 111 ? N3 ? L NCO ? N3 31 1 N 0 A NCO 111 ? N4 ? L NCO ? N4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 15 ? A G 1 2 1 Y 1 A C 81 ? A C 67 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 C OP3 O N N 45 C P P N N 46 C OP1 O N N 47 C OP2 O N N 48 C "O5'" O N N 49 C "C5'" C N N 50 C "C4'" C N R 51 C "O4'" O N N 52 C "C3'" C N S 53 C "O3'" O N N 54 C "C2'" C N R 55 C "O2'" O N N 56 C "C1'" C N R 57 C N1 N N N 58 C C2 C N N 59 C O2 O N N 60 C N3 N N N 61 C C4 C N N 62 C N4 N N N 63 C C5 C N N 64 C C6 C N N 65 C HOP3 H N N 66 C HOP2 H N N 67 C "H5'" H N N 68 C "H5''" H N N 69 C "H4'" H N N 70 C "H3'" H N N 71 C "HO3'" H N N 72 C "H2'" H N N 73 C "HO2'" H N N 74 C "H1'" H N N 75 C H41 H N N 76 C H42 H N N 77 C H5 H N N 78 C H6 H N N 79 G OP3 O N N 80 G P P N N 81 G OP1 O N N 82 G OP2 O N N 83 G "O5'" O N N 84 G "C5'" C N N 85 G "C4'" C N R 86 G "O4'" O N N 87 G "C3'" C N S 88 G "O3'" O N N 89 G "C2'" C N R 90 G "O2'" O N N 91 G "C1'" C N R 92 G N9 N Y N 93 G C8 C Y N 94 G N7 N Y N 95 G C5 C Y N 96 G C6 C N N 97 G O6 O N N 98 G N1 N N N 99 G C2 C N N 100 G N2 N N N 101 G N3 N N N 102 G C4 C Y N 103 G HOP3 H N N 104 G HOP2 H N N 105 G "H5'" H N N 106 G "H5''" H N N 107 G "H4'" H N N 108 G "H3'" H N N 109 G "HO3'" H N N 110 G "H2'" H N N 111 G "HO2'" H N N 112 G "H1'" H N N 113 G H8 H N N 114 G H1 H N N 115 G H21 H N N 116 G H22 H N N 117 HOH O O N N 118 HOH H1 H N N 119 HOH H2 H N N 120 K K K N N 121 NCO CO CO N N 122 NCO N1 N N N 123 NCO N2 N N N 124 NCO N3 N N N 125 NCO N4 N N N 126 NCO N5 N N N 127 NCO N6 N N N 128 NCO HN11 H N N 129 NCO HN12 H N N 130 NCO HN13 H N N 131 NCO HN21 H N N 132 NCO HN22 H N N 133 NCO HN23 H N N 134 NCO HN31 H N N 135 NCO HN32 H N N 136 NCO HN33 H N N 137 NCO HN41 H N N 138 NCO HN42 H N N 139 NCO HN43 H N N 140 NCO HN51 H N N 141 NCO HN52 H N N 142 NCO HN53 H N N 143 NCO HN61 H N N 144 NCO HN62 H N N 145 NCO HN63 H N N 146 U OP3 O N N 147 U P P N N 148 U OP1 O N N 149 U OP2 O N N 150 U "O5'" O N N 151 U "C5'" C N N 152 U "C4'" C N R 153 U "O4'" O N N 154 U "C3'" C N S 155 U "O3'" O N N 156 U "C2'" C N R 157 U "O2'" O N N 158 U "C1'" C N R 159 U N1 N N N 160 U C2 C N N 161 U O2 O N N 162 U N3 N N N 163 U C4 C N N 164 U O4 O N N 165 U C5 C N N 166 U C6 C N N 167 U HOP3 H N N 168 U HOP2 H N N 169 U "H5'" H N N 170 U "H5''" H N N 171 U "H4'" H N N 172 U "H3'" H N N 173 U "HO3'" H N N 174 U "H2'" H N N 175 U "HO2'" H N N 176 U "H1'" H N N 177 U H3 H N N 178 U H5 H N N 179 U H6 H N N 180 ZZS NAA N N N 181 ZZS CAG C Y N 182 ZZS NAF N Y N 183 ZZS NAD N Y N 184 ZZS CAC C Y N 185 ZZS NAE N Y N 186 ZZS CAH C Y N 187 ZZS NAB N N N 188 ZZS HAA1 H N N 189 ZZS HAA2 H N N 190 ZZS HAC H N N 191 ZZS HAB1 H N N 192 ZZS HAB2 H N N 193 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 C OP3 P sing N N 46 C OP3 HOP3 sing N N 47 C P OP1 doub N N 48 C P OP2 sing N N 49 C P "O5'" sing N N 50 C OP2 HOP2 sing N N 51 C "O5'" "C5'" sing N N 52 C "C5'" "C4'" sing N N 53 C "C5'" "H5'" sing N N 54 C "C5'" "H5''" sing N N 55 C "C4'" "O4'" sing N N 56 C "C4'" "C3'" sing N N 57 C "C4'" "H4'" sing N N 58 C "O4'" "C1'" sing N N 59 C "C3'" "O3'" sing N N 60 C "C3'" "C2'" sing N N 61 C "C3'" "H3'" sing N N 62 C "O3'" "HO3'" sing N N 63 C "C2'" "O2'" sing N N 64 C "C2'" "C1'" sing N N 65 C "C2'" "H2'" sing N N 66 C "O2'" "HO2'" sing N N 67 C "C1'" N1 sing N N 68 C "C1'" "H1'" sing N N 69 C N1 C2 sing N N 70 C N1 C6 sing N N 71 C C2 O2 doub N N 72 C C2 N3 sing N N 73 C N3 C4 doub N N 74 C C4 N4 sing N N 75 C C4 C5 sing N N 76 C N4 H41 sing N N 77 C N4 H42 sing N N 78 C C5 C6 doub N N 79 C C5 H5 sing N N 80 C C6 H6 sing N N 81 G OP3 P sing N N 82 G OP3 HOP3 sing N N 83 G P OP1 doub N N 84 G P OP2 sing N N 85 G P "O5'" sing N N 86 G OP2 HOP2 sing N N 87 G "O5'" "C5'" sing N N 88 G "C5'" "C4'" sing N N 89 G "C5'" "H5'" sing N N 90 G "C5'" "H5''" sing N N 91 G "C4'" "O4'" sing N N 92 G "C4'" "C3'" sing N N 93 G "C4'" "H4'" sing N N 94 G "O4'" "C1'" sing N N 95 G "C3'" "O3'" sing N N 96 G "C3'" "C2'" sing N N 97 G "C3'" "H3'" sing N N 98 G "O3'" "HO3'" sing N N 99 G "C2'" "O2'" sing N N 100 G "C2'" "C1'" sing N N 101 G "C2'" "H2'" sing N N 102 G "O2'" "HO2'" sing N N 103 G "C1'" N9 sing N N 104 G "C1'" "H1'" sing N N 105 G N9 C8 sing Y N 106 G N9 C4 sing Y N 107 G C8 N7 doub Y N 108 G C8 H8 sing N N 109 G N7 C5 sing Y N 110 G C5 C6 sing N N 111 G C5 C4 doub Y N 112 G C6 O6 doub N N 113 G C6 N1 sing N N 114 G N1 C2 sing N N 115 G N1 H1 sing N N 116 G C2 N2 sing N N 117 G C2 N3 doub N N 118 G N2 H21 sing N N 119 G N2 H22 sing N N 120 G N3 C4 sing N N 121 HOH O H1 sing N N 122 HOH O H2 sing N N 123 NCO CO N1 sing N N 124 NCO CO N2 sing N N 125 NCO CO N3 sing N N 126 NCO CO N4 sing N N 127 NCO CO N5 sing N N 128 NCO CO N6 sing N N 129 NCO N1 HN11 sing N N 130 NCO N1 HN12 sing N N 131 NCO N1 HN13 sing N N 132 NCO N2 HN21 sing N N 133 NCO N2 HN22 sing N N 134 NCO N2 HN23 sing N N 135 NCO N3 HN31 sing N N 136 NCO N3 HN32 sing N N 137 NCO N3 HN33 sing N N 138 NCO N4 HN41 sing N N 139 NCO N4 HN42 sing N N 140 NCO N4 HN43 sing N N 141 NCO N5 HN51 sing N N 142 NCO N5 HN52 sing N N 143 NCO N5 HN53 sing N N 144 NCO N6 HN61 sing N N 145 NCO N6 HN62 sing N N 146 NCO N6 HN63 sing N N 147 U OP3 P sing N N 148 U OP3 HOP3 sing N N 149 U P OP1 doub N N 150 U P OP2 sing N N 151 U P "O5'" sing N N 152 U OP2 HOP2 sing N N 153 U "O5'" "C5'" sing N N 154 U "C5'" "C4'" sing N N 155 U "C5'" "H5'" sing N N 156 U "C5'" "H5''" sing N N 157 U "C4'" "O4'" sing N N 158 U "C4'" "C3'" sing N N 159 U "C4'" "H4'" sing N N 160 U "O4'" "C1'" sing N N 161 U "C3'" "O3'" sing N N 162 U "C3'" "C2'" sing N N 163 U "C3'" "H3'" sing N N 164 U "O3'" "HO3'" sing N N 165 U "C2'" "O2'" sing N N 166 U "C2'" "C1'" sing N N 167 U "C2'" "H2'" sing N N 168 U "O2'" "HO2'" sing N N 169 U "C1'" N1 sing N N 170 U "C1'" "H1'" sing N N 171 U N1 C2 sing N N 172 U N1 C6 sing N N 173 U C2 O2 doub N N 174 U C2 N3 sing N N 175 U N3 C4 sing N N 176 U N3 H3 sing N N 177 U C4 O4 doub N N 178 U C4 C5 sing N N 179 U C5 C6 doub N N 180 U C5 H5 sing N N 181 U C6 H6 sing N N 182 ZZS NAA CAG sing N N 183 ZZS CAG NAF sing Y N 184 ZZS CAG NAD doub Y N 185 ZZS NAF CAH doub Y N 186 ZZS NAD CAC sing Y N 187 ZZS CAC NAE doub Y N 188 ZZS NAE CAH sing Y N 189 ZZS CAH NAB sing N N 190 ZZS NAA HAA1 sing N N 191 ZZS NAA HAA2 sing N N 192 ZZS CAC HAC sing N N 193 ZZS NAB HAB1 sing N N 194 ZZS NAB HAB2 sing N N 195 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2XO0 'double helix' 2XO0 'a-form double helix' 2XO0 'mismatched base pair' 2XO0 'internal loop' 2XO0 'triple helix' 2XO0 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 3 1_555 A U 65 1_555 -0.705 -0.239 0.451 4.632 -22.879 2.624 1 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 0.140 -0.224 0.212 -0.554 -16.359 3.647 2 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 -0.130 0.020 0.177 -3.555 -9.821 2.407 3 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.136 -0.090 0.217 -4.810 -23.169 3.422 4 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 0.039 -0.135 0.201 -4.552 -15.268 0.407 5 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 33 1_555 A U 37 1_555 3.524 -0.419 0.424 29.805 39.350 -76.221 6 A_U47:U51_A A 47 ? A 51 ? ? ? 1 A U 8 1_555 A A 38 1_555 -0.080 -0.058 -0.041 11.527 4.296 -0.443 7 A_U22:A52_A A 22 ? A 52 ? 20 1 1 A G 32 1_555 A C 39 1_555 -0.149 -0.067 -0.203 -19.824 -2.819 -0.838 8 A_G46:C53_A A 46 ? A 53 ? 19 1 1 A A 31 1_555 A U 11 1_555 0.179 -0.051 0.229 2.249 -12.038 2.673 9 A_A45:U25_A A 45 ? A 25 ? 20 1 1 A A 30 1_555 A C 12 1_555 -4.563 -0.467 -0.075 2.183 -13.840 10.953 10 A_A44:C26_A A 44 ? A 26 ? ? 1 1 A C 29 1_555 A G 13 1_555 0.199 -0.233 -0.072 -1.856 -7.340 -7.706 11 A_C43:G27_A A 43 ? A 27 ? 19 1 1 A G 28 1_555 A C 14 1_555 0.025 -0.076 0.026 -6.535 -8.609 0.678 12 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A C 27 1_555 A G 15 1_555 0.349 -0.179 0.052 -2.325 -11.681 0.689 13 A_C41:G29_A A 41 ? A 29 ? 19 1 1 A A 26 1_555 A U 16 1_555 0.098 -0.107 -0.068 -5.484 -7.790 4.544 14 A_A40:U30_A A 40 ? A 30 ? 20 1 1 A C 25 1_555 A G 17 1_555 0.189 -0.171 0.189 -6.372 -6.964 0.746 15 A_C39:G31_A A 39 ? A 31 ? 19 1 1 A A 19 1_555 A A 52 1_555 4.151 1.384 -0.263 -9.795 -6.539 -110.045 16 A_A33:A66_A A 33 ? A 66 ? 5 4 1 A U 20 1_555 A A 51 1_555 4.227 -1.999 -0.353 -4.394 -3.685 -99.829 17 A_U34:A65_A A 34 ? A 65 ? 24 4 1 A A 21 1_555 A A 50 1_555 -4.118 1.399 0.356 -1.680 3.976 -112.134 18 A_A35:A64_A A 35 ? A 64 ? 5 4 1 A G 23 1_555 A C 47 1_555 -0.165 -0.213 0.481 0.807 -9.504 -3.968 19 A_G37:C61_A A 37 ? A 61 ? 19 1 1 A G 24 1_555 A C 46 1_555 -0.012 -0.071 0.651 20.452 -14.303 -0.765 20 A_G38:C60_A A 38 ? A 60 ? 19 1 1 A U 53 1_555 A A 45 1_555 -0.162 -0.096 0.224 1.213 -11.799 1.305 21 A_U67:A59_A A 67 ? A 59 ? 20 1 1 A G 54 1_555 A C 44 1_555 -0.188 -0.218 0.169 -4.736 -14.377 0.710 22 A_G68:C58_A A 68 ? A 58 ? 19 1 1 A U 55 1_555 A G 43 1_555 2.312 -0.759 0.118 -1.519 -12.884 -4.954 23 A_U69:G57_A A 69 ? A 57 ? 28 1 1 A C 56 1_555 A G 42 1_555 0.210 -0.260 0.138 -0.284 -9.918 -4.265 24 A_C70:G56_A A 70 ? A 56 ? 19 1 1 A C 57 1_555 A G 41 1_555 0.097 -0.128 0.224 5.010 -10.345 -1.256 25 A_C71:G55_A A 71 ? A 55 ? 19 1 1 A G 58 1_555 A C 40 1_555 -0.143 -0.205 0.143 4.043 -15.589 0.988 26 A_G72:C54_A A 72 ? A 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.536 -1.767 3.410 0.910 4.034 33.208 -3.744 -0.778 3.193 7.025 -1.584 33.458 1 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 -0.290 -1.760 3.035 -0.239 13.323 29.460 -5.101 0.487 2.068 24.671 0.442 32.273 2 AA_C18A19:U77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 0.209 -1.352 3.307 2.329 10.807 30.546 -4.219 0.013 2.694 19.719 -4.250 32.440 3 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.520 -1.569 3.010 2.218 19.704 31.344 -4.595 -0.581 1.780 32.698 -3.681 36.956 4 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A A 7 1_555 A U 61 1_555 A U 33 1_555 A U 37 1_555 2.169 -0.541 6.679 -31.105 -164.314 36.727 2.901 -1.691 2.238 -86.446 16.364 167.885 5 AA_A21U47:U51U75_AA A 21 ? A 75 ? A 47 ? A 51 ? 1 A U 33 1_555 A U 37 1_555 A U 8 1_555 A A 38 1_555 -0.201 1.187 -3.070 -2.868 -20.865 -2.718 -8.717 0.209 0.744 81.958 -11.264 -21.234 6 AA_U47U22:A52U51_AA A 47 ? A 51 ? A 22 ? A 52 ? 1 A U 8 1_555 A A 38 1_555 A G 32 1_555 A C 39 1_555 2.061 0.024 -2.636 2.542 -7.683 -43.042 -0.637 2.566 -2.705 10.362 3.428 -43.760 7 AA_U22G46:C53A52_AA A 22 ? A 52 ? A 46 ? A 53 ? 1 A G 32 1_555 A C 39 1_555 A A 31 1_555 A U 11 1_555 -2.274 0.590 -3.655 -15.199 -4.441 -52.901 -0.957 -1.372 -4.061 4.863 -16.644 -55.056 8 AA_G46A45:U25C53_AA A 46 ? A 53 ? A 45 ? A 25 ? 1 A A 31 1_555 A U 11 1_555 A A 30 1_555 A C 12 1_555 0.553 1.194 -3.309 5.899 -5.433 -49.264 -1.813 0.224 -3.210 6.468 7.022 -49.873 9 AA_A45A44:C26U25_AA A 45 ? A 25 ? A 44 ? A 26 ? 1 A A 30 1_555 A C 12 1_555 A C 29 1_555 A G 13 1_555 -2.250 2.138 -2.896 -1.280 -14.218 -8.497 -12.740 -7.313 0.168 59.152 -5.325 -16.602 10 AA_A44C43:G27C26_AA A 44 ? A 26 ? A 43 ? A 27 ? 1 A C 29 1_555 A G 13 1_555 A G 28 1_555 A C 14 1_555 0.890 1.978 -3.172 -0.540 -2.101 -29.994 -4.221 1.819 -3.014 4.053 -1.041 -30.070 11 AA_C43G42:C28G27_AA A 43 ? A 27 ? A 42 ? A 28 ? 1 A G 28 1_555 A C 14 1_555 A C 27 1_555 A G 15 1_555 -0.566 1.811 -3.205 -1.629 -9.698 -29.452 -5.065 -0.776 -2.523 18.439 -3.097 -31.016 12 AA_G42C41:G29C28_AA A 42 ? A 28 ? A 41 ? A 29 ? 1 A C 27 1_555 A G 15 1_555 A A 26 1_555 A U 16 1_555 -0.044 1.206 -3.217 0.168 -10.020 -31.854 -3.650 -0.103 -2.723 17.717 0.297 -33.354 13 AA_C41A40:U30G29_AA A 41 ? A 29 ? A 40 ? A 30 ? 1 A A 26 1_555 A U 16 1_555 A C 25 1_555 A G 17 1_555 0.717 1.748 -3.177 -2.285 -5.371 -31.917 -3.999 1.653 -2.797 9.666 -4.113 -32.433 14 AA_A40C39:G31U30_AA A 40 ? A 30 ? A 39 ? A 31 ? 1 A A 19 1_555 A A 52 1_555 A U 20 1_555 A A 51 1_555 0.089 -1.789 3.356 8.254 3.449 38.360 -3.068 0.853 3.141 5.163 -12.358 39.351 15 AA_A33U34:A65A66_AA A 33 ? A 66 ? A 34 ? A 65 ? 1 A U 20 1_555 A A 51 1_555 A A 21 1_555 A A 50 1_555 -3.794 4.111 3.613 -19.615 16.976 -19.478 -8.189 -7.747 -2.221 -35.144 -40.609 -32.339 16 AA_U34A35:A64A65_AA A 34 ? A 65 ? A 35 ? A 64 ? 1 A G 23 1_555 A C 47 1_555 A G 24 1_555 A C 46 1_555 0.622 -0.605 2.900 0.970 5.343 28.972 -2.185 -1.042 2.765 10.562 -1.919 29.466 17 AA_G37G38:C60C61_AA A 37 ? A 61 ? A 38 ? A 60 ? 1 A G 24 1_555 A C 46 1_555 A U 53 1_555 A A 45 1_555 -2.007 -0.532 3.432 -4.395 8.533 54.671 -1.102 1.885 3.459 9.212 4.744 55.444 18 AA_G38U67:A59C60_AA A 38 ? A 60 ? A 67 ? A 59 ? 1 A U 53 1_555 A A 45 1_555 A G 54 1_555 A C 44 1_555 -0.181 -1.650 3.313 -1.017 3.795 33.461 -3.456 0.149 3.116 6.564 1.758 33.685 19 AA_U67G68:C58A59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A G 54 1_555 A C 44 1_555 A U 55 1_555 A G 43 1_555 -0.457 -1.216 3.127 1.166 2.371 43.900 -1.836 0.715 3.048 3.168 -1.558 43.975 20 AA_G68U69:G57C58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A U 55 1_555 A G 43 1_555 A C 56 1_555 A G 42 1_555 -0.153 -1.627 3.069 2.994 7.110 26.327 -4.966 0.967 2.519 15.199 -6.400 27.414 21 AA_U69C70:G56G57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A C 56 1_555 A G 42 1_555 A C 57 1_555 A G 41 1_555 0.237 -0.597 3.203 0.467 5.996 29.774 -2.299 -0.363 3.031 11.522 -0.898 30.362 22 AA_C70C71:G55G56_AA A 70 ? A 56 ? A 71 ? A 55 ? 1 A C 57 1_555 A G 41 1_555 A G 58 1_555 A C 40 1_555 0.764 -1.724 3.063 -0.672 9.708 34.150 -4.060 -1.339 2.481 16.130 1.117 35.470 23 AA_C71G72:C54G55_AA A 71 ? A 55 ? A 72 ? A 54 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 'COBALT HEXAMMINE(III)' NCO 4 'POTASSIUM ION' K 5 1,3,5-TRIAZINE-2,4-DIAMINE ZZS 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2G9C _pdbx_initial_refinement_model.details 'PDB ENTRY 2G9C' #