data_2XSD # _entry.id 2XSD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2XSD pdb_00002xsd 10.2210/pdb2xsd/pdb PDBE EBI-45556 ? ? WWPDB D_1290045556 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XSD _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-09-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jauch, R.' 1 'Choo, S.H.' 2 'Ng, C.K.L.' 3 'Kolatkar, P.R.' 4 # _citation.id primary _citation.title 'Crystal Structure of the Dimeric Oct6 (POU3F1) POU Domain Bound to Palindromic More DNA.' _citation.journal_abbrev Proteins _citation.journal_volume 79 _citation.page_first 674 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21117060 _citation.pdbx_database_id_DOI 10.1002/PROT.22916 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jauch, R.' 1 ? primary 'Choo, S.H.' 2 ? primary 'Ng, C.K.L.' 3 ? primary 'Kolatkar, P.R.' 4 ? # _cell.entry_id 2XSD _cell.length_a 93.497 _cell.length_b 52.009 _cell.length_c 69.013 _cell.angle_alpha 90.00 _cell.angle_beta 129.03 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XSD _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3'" 3422.260 1 ? ? ? ? 2 polymer syn "5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3'" 3293.174 1 ? ? ? ? 3 polymer man 'POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1' 18255.854 1 ? ? 'RESIDUES 240-402' ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 5 water nat water 18.015 38 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'OCTAMER-BINDING TRANSCRIPTION FACTOR 6, OCTAMER-BINDING PROTEIN 6, POU DOMAIN TRANSCRIPTION FACTOR SCIP, OTF-6, OCT-6' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DC)(DA)(DT)(DG)(DA)(DG)(DG)(DA)' ATGCATGAGGA A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DC)(DA)(DT)(DG)(DC)(DA)(DT)(DA)' CCTCATGCATA B ? 3 'polypeptide(L)' no no ;GGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEET DSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA AGAG ; ;GGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEET DSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA AGAG ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DG n 1 4 DC n 1 5 DA n 1 6 DT n 1 7 DG n 1 8 DA n 1 9 DG n 1 10 DG n 1 11 DA n 2 1 DC n 2 2 DC n 2 3 DT n 2 4 DC n 2 5 DA n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DA n 2 10 DT n 2 11 DA n 3 1 GLY n 3 2 GLY n 3 3 GLU n 3 4 HIS n 3 5 SER n 3 6 ASP n 3 7 GLU n 3 8 ASP n 3 9 ALA n 3 10 PRO n 3 11 SER n 3 12 SER n 3 13 ASP n 3 14 ASP n 3 15 LEU n 3 16 GLU n 3 17 GLN n 3 18 PHE n 3 19 ALA n 3 20 LYS n 3 21 GLN n 3 22 PHE n 3 23 LYS n 3 24 GLN n 3 25 ARG n 3 26 ARG n 3 27 ILE n 3 28 LYS n 3 29 LEU n 3 30 GLY n 3 31 PHE n 3 32 THR n 3 33 GLN n 3 34 ALA n 3 35 ASP n 3 36 VAL n 3 37 GLY n 3 38 LEU n 3 39 ALA n 3 40 LEU n 3 41 GLY n 3 42 THR n 3 43 LEU n 3 44 TYR n 3 45 GLY n 3 46 ASN n 3 47 VAL n 3 48 PHE n 3 49 SER n 3 50 GLN n 3 51 THR n 3 52 THR n 3 53 ILE n 3 54 CYS n 3 55 ARG n 3 56 PHE n 3 57 GLU n 3 58 ALA n 3 59 LEU n 3 60 GLN n 3 61 LEU n 3 62 SER n 3 63 PHE n 3 64 LYS n 3 65 ASN n 3 66 MET n 3 67 CYS n 3 68 LYS n 3 69 LEU n 3 70 LYS n 3 71 PRO n 3 72 LEU n 3 73 LEU n 3 74 ASN n 3 75 LYS n 3 76 TRP n 3 77 LEU n 3 78 GLU n 3 79 GLU n 3 80 THR n 3 81 ASP n 3 82 SER n 3 83 SER n 3 84 SER n 3 85 GLY n 3 86 SER n 3 87 PRO n 3 88 THR n 3 89 ASN n 3 90 LEU n 3 91 ASP n 3 92 LYS n 3 93 ILE n 3 94 ALA n 3 95 ALA n 3 96 GLN n 3 97 GLY n 3 98 ARG n 3 99 LYS n 3 100 ARG n 3 101 LYS n 3 102 LYS n 3 103 ARG n 3 104 THR n 3 105 SER n 3 106 ILE n 3 107 GLU n 3 108 VAL n 3 109 GLY n 3 110 VAL n 3 111 LYS n 3 112 GLY n 3 113 ALA n 3 114 LEU n 3 115 GLU n 3 116 SER n 3 117 HIS n 3 118 PHE n 3 119 LEU n 3 120 LYS n 3 121 CYS n 3 122 PRO n 3 123 LYS n 3 124 PRO n 3 125 SER n 3 126 ALA n 3 127 HIS n 3 128 GLU n 3 129 ILE n 3 130 THR n 3 131 GLY n 3 132 LEU n 3 133 ALA n 3 134 ASP n 3 135 SER n 3 136 LEU n 3 137 GLN n 3 138 LEU n 3 139 GLU n 3 140 LYS n 3 141 GLU n 3 142 VAL n 3 143 VAL n 3 144 ARG n 3 145 VAL n 3 146 TRP n 3 147 PHE n 3 148 CYS n 3 149 ASN n 3 150 ARG n 3 151 ARG n 3 152 GLN n 3 153 LYS n 3 154 GLU n 3 155 LYS n 3 156 ARG n 3 157 MET n 3 158 THR n 3 159 PRO n 3 160 ALA n 3 161 ALA n 3 162 GLY n 3 163 ALA n 3 164 GLY n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name MOUSE _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PDEST-HISMBP _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2XSD 1 ? ? 2XSD ? 2 PDB 2XSD 2 ? ? 2XSD ? 3 UNP PO3F1_MOUSE 3 ? ? P21952 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2XSD A 1 ? 11 ? 2XSD 201 ? 211 ? 201 211 2 2 2XSD B 1 ? 11 ? 2XSD 202 ? 212 ? 202 212 3 3 2XSD C 2 ? 164 ? P21952 240 ? 402 ? 240 402 # _struct_ref_seq_dif.align_id 3 _struct_ref_seq_dif.pdbx_pdb_id_code 2XSD _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id C _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P21952 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 239 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XSD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 59.25 _exptl_crystal.description 'POLYALA MODEL WITH TERMINAL NT REMOVED' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;RESERVOIR: 0.2M MGCL2, 14%PEG4000 AND 0.1 SODIUM CITRATE PH5.6 PROTEIN-DNA COMPLEX: 10MG/ML IN 10 MM HEPES PH 7.0; 100 MM NACL EUQAL RESERVOIR AND PROTEIN VOLUMES MIXED ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-09-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength 1.075 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XSD _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.05 _reflns.number_obs 15965 _reflns.number_all ? _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_all 89.2 _reflns_shell.Rmerge_I_obs 0.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 5.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XSD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15949 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.389 _refine.ls_d_res_high 2.049 _refine.ls_percent_reflns_obs 97.63 _refine.ls_R_factor_obs 0.1978 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1940 _refine.ls_R_factor_R_free 0.2317 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.03 _refine.ls_number_reflns_R_free 1599 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 72.2 _refine.aniso_B[1][1] -0.7021 _refine.aniso_B[2][2] 5.6341 _refine.aniso_B[3][3] -4.9321 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 8.0745 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.336 _refine.solvent_model_param_bsol 54.941 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1E3O' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.pdbx_overall_phase_error 25.22 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1025 _refine_hist.pdbx_number_atoms_nucleic_acid 431 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 1510 _refine_hist.d_res_high 2.049 _refine_hist.d_res_low 41.389 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1537 'X-RAY DIFFRACTION' ? f_angle_d 1.153 ? ? 2148 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 21.582 ? ? 606 'X-RAY DIFFRACTION' ? f_chiral_restr 0.057 ? ? 239 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 199 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.0490 2.1152 1108 0.2696 85.00 0.2924 . . 138 . . 'X-RAY DIFFRACTION' . 2.1152 2.1908 1289 0.2451 96.00 0.2699 . . 134 . . 'X-RAY DIFFRACTION' . 2.1908 2.2785 1320 0.2286 100.00 0.2727 . . 135 . . 'X-RAY DIFFRACTION' . 2.2785 2.3822 1332 0.2185 100.00 0.2719 . . 158 . . 'X-RAY DIFFRACTION' . 2.3822 2.5077 1336 0.2300 100.00 0.2788 . . 143 . . 'X-RAY DIFFRACTION' . 2.5077 2.6648 1318 0.2086 100.00 0.2590 . . 153 . . 'X-RAY DIFFRACTION' . 2.6648 2.8705 1332 0.2104 100.00 0.2264 . . 144 . . 'X-RAY DIFFRACTION' . 2.8705 3.1593 1345 0.2187 100.00 0.3097 . . 151 . . 'X-RAY DIFFRACTION' . 3.1593 3.6163 1277 0.1942 96.00 0.2209 . . 141 . . 'X-RAY DIFFRACTION' . 3.6163 4.5552 1329 0.1646 98.00 0.2138 . . 147 . . 'X-RAY DIFFRACTION' . 4.5552 41.3979 1364 0.1643 99.00 0.1859 . . 155 . . # _struct.entry_id 2XSD _struct.title 'Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XSD _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'TRANSCRIPTION-DNA COMPLEX, SOX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 11 ? LEU C 29 ? SER C 249 LEU C 267 1 ? 19 HELX_P HELX_P2 2 THR C 32 ? GLY C 45 ? THR C 270 GLY C 283 1 ? 14 HELX_P HELX_P3 3 SER C 49 ? ALA C 58 ? SER C 287 ALA C 296 1 ? 10 HELX_P HELX_P4 4 SER C 62 ? ASP C 81 ? SER C 300 ASP C 319 1 ? 20 HELX_P HELX_P5 5 GLU C 107 ? CYS C 121 ? GLU C 345 CYS C 359 1 ? 15 HELX_P HELX_P6 6 SER C 125 ? GLN C 137 ? SER C 363 GLN C 375 1 ? 13 HELX_P HELX_P7 7 GLU C 139 ? LYS C 155 ? GLU C 377 LYS C 393 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 201 B DT 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 201 B DT 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 202 B DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 202 B DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 203 B DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 203 B DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 203 B DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 204 B DG 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 204 B DG 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 204 B DG 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 205 B DT 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 205 B DT 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 206 B DA 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 206 B DA 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 207 B DC 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 207 B DC 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 207 B DC 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 208 B DT 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 208 B DT 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 209 B DC 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 209 B DC 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 209 B DC 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 210 B DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 210 B DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 210 B DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C EDO 1398 ? 6 'BINDING SITE FOR RESIDUE EDO C 1398' AC2 Software C EDO 1399 ? 4 'BINDING SITE FOR RESIDUE EDO C 1399' AC3 Software C EDO 1400 ? 6 'BINDING SITE FOR RESIDUE EDO C 1400' AC4 Software C EDO 1401 ? 4 'BINDING SITE FOR RESIDUE EDO C 1401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LEU C 43 ? LEU C 281 . ? 4_546 ? 2 AC1 6 TYR C 44 ? TYR C 282 . ? 4_546 ? 3 AC1 6 SER C 62 ? SER C 300 . ? 1_555 ? 4 AC1 6 PHE C 63 ? PHE C 301 . ? 1_555 ? 5 AC1 6 LYS C 64 ? LYS C 302 . ? 1_555 ? 6 AC1 6 LYS C 155 ? LYS C 393 . ? 1_555 ? 7 AC2 4 DT B 10 ? DT B 211 . ? 2_556 ? 8 AC2 4 ARG C 26 ? ARG C 264 . ? 1_555 ? 9 AC2 4 PHE C 31 ? PHE C 269 . ? 1_555 ? 10 AC2 4 HOH J . ? HOH C 2018 . ? 1_555 ? 11 AC3 6 DT A 6 ? DT A 206 . ? 1_555 ? 12 AC3 6 DG A 7 ? DG A 207 . ? 1_555 ? 13 AC3 6 DC B 4 ? DC B 205 . ? 1_555 ? 14 AC3 6 CYS C 148 ? CYS C 386 . ? 1_555 ? 15 AC3 6 ASN C 149 ? ASN C 387 . ? 1_555 ? 16 AC3 6 GLN C 152 ? GLN C 390 . ? 1_555 ? 17 AC4 4 DA B 9 ? DA B 210 . ? 2_556 ? 18 AC4 4 ASP C 35 ? ASP C 273 . ? 1_555 ? 19 AC4 4 HOH J . ? HOH C 2004 . ? 1_555 ? 20 AC4 4 HOH J . ? HOH C 2018 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XSD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XSD _atom_sites.fract_transf_matrix[1][1] 0.010696 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008670 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019227 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018653 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 201 201 DA DA A . n A 1 2 DT 2 202 202 DT DT A . n A 1 3 DG 3 203 203 DG DG A . n A 1 4 DC 4 204 204 DC DC A . n A 1 5 DA 5 205 205 DA DA A . n A 1 6 DT 6 206 206 DT DT A . n A 1 7 DG 7 207 207 DG DG A . n A 1 8 DA 8 208 208 DA DA A . n A 1 9 DG 9 209 209 DG DG A . n A 1 10 DG 10 210 210 DG DG A . n A 1 11 DA 11 211 211 DA DA A . n B 2 1 DC 1 202 202 DC DC B . n B 2 2 DC 2 203 203 DC DC B . n B 2 3 DT 3 204 204 DT DT B . n B 2 4 DC 4 205 205 DC DC B . n B 2 5 DA 5 206 206 DA DA B . n B 2 6 DT 6 207 207 DT DT B . n B 2 7 DG 7 208 208 DG DG B . n B 2 8 DC 8 209 209 DC DC B . n B 2 9 DA 9 210 210 DA DA B . n B 2 10 DT 10 211 211 DT DT B . n B 2 11 DA 11 212 212 DA DA B . n C 3 1 GLY 1 239 ? ? ? C . n C 3 2 GLY 2 240 ? ? ? C . n C 3 3 GLU 3 241 ? ? ? C . n C 3 4 HIS 4 242 ? ? ? C . n C 3 5 SER 5 243 ? ? ? C . n C 3 6 ASP 6 244 ? ? ? C . n C 3 7 GLU 7 245 ? ? ? C . n C 3 8 ASP 8 246 ? ? ? C . n C 3 9 ALA 9 247 247 ALA ALA C . n C 3 10 PRO 10 248 248 PRO PRO C . n C 3 11 SER 11 249 249 SER SER C . n C 3 12 SER 12 250 250 SER SER C . n C 3 13 ASP 13 251 251 ASP ASP C . n C 3 14 ASP 14 252 252 ASP ASP C . n C 3 15 LEU 15 253 253 LEU LEU C . n C 3 16 GLU 16 254 254 GLU GLU C . n C 3 17 GLN 17 255 255 GLN GLN C . n C 3 18 PHE 18 256 256 PHE PHE C . n C 3 19 ALA 19 257 257 ALA ALA C . n C 3 20 LYS 20 258 258 LYS LYS C . n C 3 21 GLN 21 259 259 GLN GLN C . n C 3 22 PHE 22 260 260 PHE PHE C . n C 3 23 LYS 23 261 261 LYS LYS C . n C 3 24 GLN 24 262 262 GLN GLN C . n C 3 25 ARG 25 263 263 ARG ARG C . n C 3 26 ARG 26 264 264 ARG ARG C . n C 3 27 ILE 27 265 265 ILE ILE C . n C 3 28 LYS 28 266 266 LYS LYS C . n C 3 29 LEU 29 267 267 LEU LEU C . n C 3 30 GLY 30 268 268 GLY GLY C . n C 3 31 PHE 31 269 269 PHE PHE C . n C 3 32 THR 32 270 270 THR THR C . n C 3 33 GLN 33 271 271 GLN GLN C . n C 3 34 ALA 34 272 272 ALA ALA C . n C 3 35 ASP 35 273 273 ASP ASP C . n C 3 36 VAL 36 274 274 VAL VAL C . n C 3 37 GLY 37 275 275 GLY GLY C . n C 3 38 LEU 38 276 276 LEU LEU C . n C 3 39 ALA 39 277 277 ALA ALA C . n C 3 40 LEU 40 278 278 LEU LEU C . n C 3 41 GLY 41 279 279 GLY GLY C . n C 3 42 THR 42 280 280 THR THR C . n C 3 43 LEU 43 281 281 LEU LEU C . n C 3 44 TYR 44 282 282 TYR TYR C . n C 3 45 GLY 45 283 283 GLY GLY C . n C 3 46 ASN 46 284 284 ASN ASN C . n C 3 47 VAL 47 285 285 VAL VAL C . n C 3 48 PHE 48 286 286 PHE PHE C . n C 3 49 SER 49 287 287 SER SER C . n C 3 50 GLN 50 288 288 GLN GLN C . n C 3 51 THR 51 289 289 THR THR C . n C 3 52 THR 52 290 290 THR THR C . n C 3 53 ILE 53 291 291 ILE ILE C . n C 3 54 CYS 54 292 292 CYS CYS C . n C 3 55 ARG 55 293 293 ARG ARG C . n C 3 56 PHE 56 294 294 PHE PHE C . n C 3 57 GLU 57 295 295 GLU GLU C . n C 3 58 ALA 58 296 296 ALA ALA C . n C 3 59 LEU 59 297 297 LEU LEU C . n C 3 60 GLN 60 298 298 GLN GLN C . n C 3 61 LEU 61 299 299 LEU LEU C . n C 3 62 SER 62 300 300 SER SER C . n C 3 63 PHE 63 301 301 PHE PHE C . n C 3 64 LYS 64 302 302 LYS LYS C . n C 3 65 ASN 65 303 303 ASN ASN C . n C 3 66 MET 66 304 304 MET MET C . n C 3 67 CYS 67 305 305 CYS CYS C . n C 3 68 LYS 68 306 306 LYS LYS C . n C 3 69 LEU 69 307 307 LEU LEU C . n C 3 70 LYS 70 308 308 LYS LYS C . n C 3 71 PRO 71 309 309 PRO PRO C . n C 3 72 LEU 72 310 310 LEU LEU C . n C 3 73 LEU 73 311 311 LEU LEU C . n C 3 74 ASN 74 312 312 ASN ASN C . n C 3 75 LYS 75 313 313 LYS LYS C . n C 3 76 TRP 76 314 314 TRP TRP C . n C 3 77 LEU 77 315 315 LEU LEU C . n C 3 78 GLU 78 316 316 GLU GLU C . n C 3 79 GLU 79 317 317 GLU GLU C . n C 3 80 THR 80 318 318 THR THR C . n C 3 81 ASP 81 319 319 ASP ASP C . n C 3 82 SER 82 320 ? ? ? C . n C 3 83 SER 83 321 ? ? ? C . n C 3 84 SER 84 322 ? ? ? C . n C 3 85 GLY 85 323 ? ? ? C . n C 3 86 SER 86 324 ? ? ? C . n C 3 87 PRO 87 325 ? ? ? C . n C 3 88 THR 88 326 ? ? ? C . n C 3 89 ASN 89 327 ? ? ? C . n C 3 90 LEU 90 328 ? ? ? C . n C 3 91 ASP 91 329 ? ? ? C . n C 3 92 LYS 92 330 ? ? ? C . n C 3 93 ILE 93 331 ? ? ? C . n C 3 94 ALA 94 332 ? ? ? C . n C 3 95 ALA 95 333 ? ? ? C . n C 3 96 GLN 96 334 ? ? ? C . n C 3 97 GLY 97 335 ? ? ? C . n C 3 98 ARG 98 336 ? ? ? C . n C 3 99 LYS 99 337 ? ? ? C . n C 3 100 ARG 100 338 ? ? ? C . n C 3 101 LYS 101 339 ? ? ? C . n C 3 102 LYS 102 340 ? ? ? C . n C 3 103 ARG 103 341 ? ? ? C . n C 3 104 THR 104 342 ? ? ? C . n C 3 105 SER 105 343 343 SER SER C . n C 3 106 ILE 106 344 344 ILE ILE C . n C 3 107 GLU 107 345 345 GLU GLU C . n C 3 108 VAL 108 346 346 VAL VAL C . n C 3 109 GLY 109 347 347 GLY GLY C . n C 3 110 VAL 110 348 348 VAL VAL C . n C 3 111 LYS 111 349 349 LYS LYS C . n C 3 112 GLY 112 350 350 GLY GLY C . n C 3 113 ALA 113 351 351 ALA ALA C . n C 3 114 LEU 114 352 352 LEU LEU C . n C 3 115 GLU 115 353 353 GLU GLU C . n C 3 116 SER 116 354 354 SER SER C . n C 3 117 HIS 117 355 355 HIS HIS C . n C 3 118 PHE 118 356 356 PHE PHE C . n C 3 119 LEU 119 357 357 LEU LEU C . n C 3 120 LYS 120 358 358 LYS LYS C . n C 3 121 CYS 121 359 359 CYS CYS C . n C 3 122 PRO 122 360 360 PRO PRO C . n C 3 123 LYS 123 361 361 LYS LYS C . n C 3 124 PRO 124 362 362 PRO PRO C . n C 3 125 SER 125 363 363 SER SER C . n C 3 126 ALA 126 364 364 ALA ALA C . n C 3 127 HIS 127 365 365 HIS HIS C . n C 3 128 GLU 128 366 366 GLU GLU C . n C 3 129 ILE 129 367 367 ILE ILE C . n C 3 130 THR 130 368 368 THR THR C . n C 3 131 GLY 131 369 369 GLY GLY C . n C 3 132 LEU 132 370 370 LEU LEU C . n C 3 133 ALA 133 371 371 ALA ALA C . n C 3 134 ASP 134 372 372 ASP ASP C . n C 3 135 SER 135 373 373 SER SER C . n C 3 136 LEU 136 374 374 LEU LEU C . n C 3 137 GLN 137 375 375 GLN GLN C . n C 3 138 LEU 138 376 376 LEU LEU C . n C 3 139 GLU 139 377 377 GLU GLU C . n C 3 140 LYS 140 378 378 LYS LYS C . n C 3 141 GLU 141 379 379 GLU GLU C . n C 3 142 VAL 142 380 380 VAL VAL C . n C 3 143 VAL 143 381 381 VAL VAL C . n C 3 144 ARG 144 382 382 ARG ARG C . n C 3 145 VAL 145 383 383 VAL VAL C . n C 3 146 TRP 146 384 384 TRP TRP C . n C 3 147 PHE 147 385 385 PHE PHE C . n C 3 148 CYS 148 386 386 CYS CYS C . n C 3 149 ASN 149 387 387 ASN ASN C . n C 3 150 ARG 150 388 388 ARG ARG C . n C 3 151 ARG 151 389 389 ARG ARG C . n C 3 152 GLN 152 390 390 GLN GLN C . n C 3 153 LYS 153 391 391 LYS LYS C . n C 3 154 GLU 154 392 392 GLU GLU C . n C 3 155 LYS 155 393 393 LYS LYS C . n C 3 156 ARG 156 394 394 ARG ARG C . n C 3 157 MET 157 395 395 MET MET C . n C 3 158 THR 158 396 396 THR THR C . n C 3 159 PRO 159 397 397 PRO PRO C . n C 3 160 ALA 160 398 ? ? ? C . n C 3 161 ALA 161 399 ? ? ? C . n C 3 162 GLY 162 400 ? ? ? C . n C 3 163 ALA 163 401 ? ? ? C . n C 3 164 GLY 164 402 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO 1 1398 1398 EDO EDO C . E 4 EDO 1 1399 1399 EDO EDO C . F 4 EDO 1 1400 1400 EDO EDO C . G 4 EDO 1 1401 1401 EDO EDO C . H 5 HOH 1 2001 2001 HOH HOH A . H 5 HOH 2 2002 2002 HOH HOH A . H 5 HOH 3 2003 2003 HOH HOH A . H 5 HOH 4 2004 2004 HOH HOH A . H 5 HOH 5 2005 2005 HOH HOH A . I 5 HOH 1 2001 2001 HOH HOH B . I 5 HOH 2 2002 2002 HOH HOH B . I 5 HOH 3 2003 2003 HOH HOH B . I 5 HOH 4 2004 2004 HOH HOH B . I 5 HOH 5 2005 2005 HOH HOH B . I 5 HOH 6 2006 2006 HOH HOH B . I 5 HOH 7 2007 2007 HOH HOH B . I 5 HOH 8 2008 2008 HOH HOH B . I 5 HOH 9 2009 2009 HOH HOH B . I 5 HOH 10 2010 2010 HOH HOH B . I 5 HOH 11 2011 2011 HOH HOH B . I 5 HOH 12 2012 2012 HOH HOH B . I 5 HOH 13 2013 2013 HOH HOH B . I 5 HOH 14 2014 2014 HOH HOH B . I 5 HOH 15 2015 2015 HOH HOH B . J 5 HOH 1 2001 2001 HOH HOH C . J 5 HOH 2 2002 2002 HOH HOH C . J 5 HOH 3 2003 2003 HOH HOH C . J 5 HOH 4 2004 2004 HOH HOH C . J 5 HOH 5 2005 2005 HOH HOH C . J 5 HOH 6 2006 2006 HOH HOH C . J 5 HOH 7 2007 2007 HOH HOH C . J 5 HOH 8 2008 2008 HOH HOH C . J 5 HOH 9 2009 2009 HOH HOH C . J 5 HOH 10 2010 2010 HOH HOH C . J 5 HOH 11 2011 2011 HOH HOH C . J 5 HOH 12 2012 2012 HOH HOH C . J 5 HOH 13 2013 2013 HOH HOH C . J 5 HOH 14 2014 2014 HOH HOH C . J 5 HOH 15 2015 2015 HOH HOH C . J 5 HOH 16 2016 2016 HOH HOH C . J 5 HOH 17 2017 2017 HOH HOH C . J 5 HOH 18 2018 2018 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4070 ? 1 MORE -14.5 ? 1 'SSA (A^2)' 10000 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2001 ? H HOH . 2 1 B HOH 2013 ? I HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-20 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -3.5520 846.7952 38.2165 0.5997 0.5720 0.3564 0.1115 -0.0939 -0.0337 4.8088 1.7959 0.1806 -1.4276 -0.7499 0.1441 -0.0403 -1.2790 -0.0708 0.7314 0.2267 0.0953 0.2249 0.5224 -0.2452 'X-RAY DIFFRACTION' 2 ? refined -8.9087 854.9192 29.5247 0.3738 0.3752 0.4646 -0.0112 0.0155 -0.0274 0.8828 0.1655 1.0046 0.3605 0.5584 0.1076 0.1365 -0.1973 0.0959 0.1326 -0.1934 -0.1058 -0.0954 -0.0666 0.0191 'X-RAY DIFFRACTION' 3 ? refined -0.6780 851.2381 31.5557 0.3382 0.3453 0.5510 0.0011 -0.1134 -0.0285 0.1904 0.1995 2.3901 0.1074 -0.1231 -0.6044 -0.0858 0.0379 0.1246 0.0656 0.0380 -0.5674 0.3187 0.3448 -0.0070 'X-RAY DIFFRACTION' 4 ? refined -15.7938 831.1885 7.4362 1.5153 0.8037 0.7742 -0.2198 -0.0258 -0.2321 6.6646 1.9528 3.7820 0.1063 1.6122 -1.1005 0.5054 1.4054 -0.9477 -0.6820 -0.1727 0.0733 2.6305 -0.1654 -0.0355 'X-RAY DIFFRACTION' 5 ? refined -14.8282 839.0312 7.4425 0.9559 0.7796 0.4879 -0.0776 0.0256 -0.0912 8.2923 1.9143 0.0455 -0.9409 -0.2339 -0.2394 0.3935 1.6933 0.2525 -1.1756 -0.1261 -0.3613 1.1584 0.2374 -0.2419 'X-RAY DIFFRACTION' 6 ? refined -6.1938 837.0064 20.0448 0.6779 0.5638 0.4930 0.0521 0.0885 -0.1469 5.7902 6.9746 7.0428 3.8949 6.0263 5.8898 0.5475 -0.8835 0.1709 0.6126 -1.3153 -0.5177 1.1006 -0.7968 0.3208 'X-RAY DIFFRACTION' 7 ? refined -9.9642 847.5584 13.8428 0.4788 0.6443 0.4182 0.0376 0.1238 0.0056 4.7212 1.0964 1.6271 0.1495 0.8426 -0.3255 0.0797 1.1136 0.3153 -0.4195 0.0554 -0.2289 0.4492 0.1341 -0.0613 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 247:269)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 270:296)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 297:319)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 343:375)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 376:387)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 388:397)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(CHAIN A OR CHAIN B)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 PHASER phasing . ? 2 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 201 ? ? "C1'" A DA 201 ? ? N9 A DA 201 ? ? 102.99 108.00 -5.01 0.70 N 2 1 "C3'" A DG 207 ? ? "C2'" A DG 207 ? ? "C1'" A DG 207 ? ? 96.79 102.40 -5.61 0.80 N 3 1 "O4'" B DC 209 ? ? "C1'" B DC 209 ? ? N1 B DC 209 ? ? 102.65 108.00 -5.35 0.70 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 298 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -95.17 _pdbx_validate_torsion.psi 43.60 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DA 201 ? "O5'" ? A DA 1 "O5'" 2 1 Y 1 B DA 212 ? "C5'" ? B DA 11 "C5'" 3 1 Y 1 B DA 212 ? "C4'" ? B DA 11 "C4'" 4 1 Y 1 B DA 212 ? "O4'" ? B DA 11 "O4'" 5 1 Y 1 B DA 212 ? "C3'" ? B DA 11 "C3'" 6 1 Y 1 B DA 212 ? "O3'" ? B DA 11 "O3'" 7 1 Y 1 B DA 212 ? "C2'" ? B DA 11 "C2'" 8 1 Y 1 B DA 212 ? "C1'" ? B DA 11 "C1'" 9 1 Y 1 B DA 212 ? N9 ? B DA 11 N9 10 1 Y 1 B DA 212 ? C8 ? B DA 11 C8 11 1 Y 1 B DA 212 ? N7 ? B DA 11 N7 12 1 Y 1 B DA 212 ? C5 ? B DA 11 C5 13 1 Y 1 B DA 212 ? C6 ? B DA 11 C6 14 1 Y 1 B DA 212 ? N6 ? B DA 11 N6 15 1 Y 1 B DA 212 ? N1 ? B DA 11 N1 16 1 Y 1 B DA 212 ? C2 ? B DA 11 C2 17 1 Y 1 B DA 212 ? N3 ? B DA 11 N3 18 1 Y 1 B DA 212 ? C4 ? B DA 11 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLY 239 ? C GLY 1 2 1 Y 1 C GLY 240 ? C GLY 2 3 1 Y 1 C GLU 241 ? C GLU 3 4 1 Y 1 C HIS 242 ? C HIS 4 5 1 Y 1 C SER 243 ? C SER 5 6 1 Y 1 C ASP 244 ? C ASP 6 7 1 Y 1 C GLU 245 ? C GLU 7 8 1 Y 1 C ASP 246 ? C ASP 8 9 1 Y 1 C SER 320 ? C SER 82 10 1 Y 1 C SER 321 ? C SER 83 11 1 Y 1 C SER 322 ? C SER 84 12 1 Y 1 C GLY 323 ? C GLY 85 13 1 Y 1 C SER 324 ? C SER 86 14 1 Y 1 C PRO 325 ? C PRO 87 15 1 Y 1 C THR 326 ? C THR 88 16 1 Y 1 C ASN 327 ? C ASN 89 17 1 Y 1 C LEU 328 ? C LEU 90 18 1 Y 1 C ASP 329 ? C ASP 91 19 1 Y 1 C LYS 330 ? C LYS 92 20 1 Y 1 C ILE 331 ? C ILE 93 21 1 Y 1 C ALA 332 ? C ALA 94 22 1 Y 1 C ALA 333 ? C ALA 95 23 1 Y 1 C GLN 334 ? C GLN 96 24 1 Y 1 C GLY 335 ? C GLY 97 25 1 Y 1 C ARG 336 ? C ARG 98 26 1 Y 1 C LYS 337 ? C LYS 99 27 1 Y 1 C ARG 338 ? C ARG 100 28 1 Y 1 C LYS 339 ? C LYS 101 29 1 Y 1 C LYS 340 ? C LYS 102 30 1 Y 1 C ARG 341 ? C ARG 103 31 1 Y 1 C THR 342 ? C THR 104 32 1 Y 1 C ALA 398 ? C ALA 160 33 1 Y 1 C ALA 399 ? C ALA 161 34 1 Y 1 C GLY 400 ? C GLY 162 35 1 Y 1 C ALA 401 ? C ALA 163 36 1 Y 1 C GLY 402 ? C GLY 164 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 EDO C1 C N N 231 EDO O1 O N N 232 EDO C2 C N N 233 EDO O2 O N N 234 EDO H11 H N N 235 EDO H12 H N N 236 EDO HO1 H N N 237 EDO H21 H N N 238 EDO H22 H N N 239 EDO HO2 H N N 240 GLN N N N N 241 GLN CA C N S 242 GLN C C N N 243 GLN O O N N 244 GLN CB C N N 245 GLN CG C N N 246 GLN CD C N N 247 GLN OE1 O N N 248 GLN NE2 N N N 249 GLN OXT O N N 250 GLN H H N N 251 GLN H2 H N N 252 GLN HA H N N 253 GLN HB2 H N N 254 GLN HB3 H N N 255 GLN HG2 H N N 256 GLN HG3 H N N 257 GLN HE21 H N N 258 GLN HE22 H N N 259 GLN HXT H N N 260 GLU N N N N 261 GLU CA C N S 262 GLU C C N N 263 GLU O O N N 264 GLU CB C N N 265 GLU CG C N N 266 GLU CD C N N 267 GLU OE1 O N N 268 GLU OE2 O N N 269 GLU OXT O N N 270 GLU H H N N 271 GLU H2 H N N 272 GLU HA H N N 273 GLU HB2 H N N 274 GLU HB3 H N N 275 GLU HG2 H N N 276 GLU HG3 H N N 277 GLU HE2 H N N 278 GLU HXT H N N 279 GLY N N N N 280 GLY CA C N N 281 GLY C C N N 282 GLY O O N N 283 GLY OXT O N N 284 GLY H H N N 285 GLY H2 H N N 286 GLY HA2 H N N 287 GLY HA3 H N N 288 GLY HXT H N N 289 HIS N N N N 290 HIS CA C N S 291 HIS C C N N 292 HIS O O N N 293 HIS CB C N N 294 HIS CG C Y N 295 HIS ND1 N Y N 296 HIS CD2 C Y N 297 HIS CE1 C Y N 298 HIS NE2 N Y N 299 HIS OXT O N N 300 HIS H H N N 301 HIS H2 H N N 302 HIS HA H N N 303 HIS HB2 H N N 304 HIS HB3 H N N 305 HIS HD1 H N N 306 HIS HD2 H N N 307 HIS HE1 H N N 308 HIS HE2 H N N 309 HIS HXT H N N 310 HOH O O N N 311 HOH H1 H N N 312 HOH H2 H N N 313 ILE N N N N 314 ILE CA C N S 315 ILE C C N N 316 ILE O O N N 317 ILE CB C N S 318 ILE CG1 C N N 319 ILE CG2 C N N 320 ILE CD1 C N N 321 ILE OXT O N N 322 ILE H H N N 323 ILE H2 H N N 324 ILE HA H N N 325 ILE HB H N N 326 ILE HG12 H N N 327 ILE HG13 H N N 328 ILE HG21 H N N 329 ILE HG22 H N N 330 ILE HG23 H N N 331 ILE HD11 H N N 332 ILE HD12 H N N 333 ILE HD13 H N N 334 ILE HXT H N N 335 LEU N N N N 336 LEU CA C N S 337 LEU C C N N 338 LEU O O N N 339 LEU CB C N N 340 LEU CG C N N 341 LEU CD1 C N N 342 LEU CD2 C N N 343 LEU OXT O N N 344 LEU H H N N 345 LEU H2 H N N 346 LEU HA H N N 347 LEU HB2 H N N 348 LEU HB3 H N N 349 LEU HG H N N 350 LEU HD11 H N N 351 LEU HD12 H N N 352 LEU HD13 H N N 353 LEU HD21 H N N 354 LEU HD22 H N N 355 LEU HD23 H N N 356 LEU HXT H N N 357 LYS N N N N 358 LYS CA C N S 359 LYS C C N N 360 LYS O O N N 361 LYS CB C N N 362 LYS CG C N N 363 LYS CD C N N 364 LYS CE C N N 365 LYS NZ N N N 366 LYS OXT O N N 367 LYS H H N N 368 LYS H2 H N N 369 LYS HA H N N 370 LYS HB2 H N N 371 LYS HB3 H N N 372 LYS HG2 H N N 373 LYS HG3 H N N 374 LYS HD2 H N N 375 LYS HD3 H N N 376 LYS HE2 H N N 377 LYS HE3 H N N 378 LYS HZ1 H N N 379 LYS HZ2 H N N 380 LYS HZ3 H N N 381 LYS HXT H N N 382 MET N N N N 383 MET CA C N S 384 MET C C N N 385 MET O O N N 386 MET CB C N N 387 MET CG C N N 388 MET SD S N N 389 MET CE C N N 390 MET OXT O N N 391 MET H H N N 392 MET H2 H N N 393 MET HA H N N 394 MET HB2 H N N 395 MET HB3 H N N 396 MET HG2 H N N 397 MET HG3 H N N 398 MET HE1 H N N 399 MET HE2 H N N 400 MET HE3 H N N 401 MET HXT H N N 402 PHE N N N N 403 PHE CA C N S 404 PHE C C N N 405 PHE O O N N 406 PHE CB C N N 407 PHE CG C Y N 408 PHE CD1 C Y N 409 PHE CD2 C Y N 410 PHE CE1 C Y N 411 PHE CE2 C Y N 412 PHE CZ C Y N 413 PHE OXT O N N 414 PHE H H N N 415 PHE H2 H N N 416 PHE HA H N N 417 PHE HB2 H N N 418 PHE HB3 H N N 419 PHE HD1 H N N 420 PHE HD2 H N N 421 PHE HE1 H N N 422 PHE HE2 H N N 423 PHE HZ H N N 424 PHE HXT H N N 425 PRO N N N N 426 PRO CA C N S 427 PRO C C N N 428 PRO O O N N 429 PRO CB C N N 430 PRO CG C N N 431 PRO CD C N N 432 PRO OXT O N N 433 PRO H H N N 434 PRO HA H N N 435 PRO HB2 H N N 436 PRO HB3 H N N 437 PRO HG2 H N N 438 PRO HG3 H N N 439 PRO HD2 H N N 440 PRO HD3 H N N 441 PRO HXT H N N 442 SER N N N N 443 SER CA C N S 444 SER C C N N 445 SER O O N N 446 SER CB C N N 447 SER OG O N N 448 SER OXT O N N 449 SER H H N N 450 SER H2 H N N 451 SER HA H N N 452 SER HB2 H N N 453 SER HB3 H N N 454 SER HG H N N 455 SER HXT H N N 456 THR N N N N 457 THR CA C N S 458 THR C C N N 459 THR O O N N 460 THR CB C N R 461 THR OG1 O N N 462 THR CG2 C N N 463 THR OXT O N N 464 THR H H N N 465 THR H2 H N N 466 THR HA H N N 467 THR HB H N N 468 THR HG1 H N N 469 THR HG21 H N N 470 THR HG22 H N N 471 THR HG23 H N N 472 THR HXT H N N 473 TRP N N N N 474 TRP CA C N S 475 TRP C C N N 476 TRP O O N N 477 TRP CB C N N 478 TRP CG C Y N 479 TRP CD1 C Y N 480 TRP CD2 C Y N 481 TRP NE1 N Y N 482 TRP CE2 C Y N 483 TRP CE3 C Y N 484 TRP CZ2 C Y N 485 TRP CZ3 C Y N 486 TRP CH2 C Y N 487 TRP OXT O N N 488 TRP H H N N 489 TRP H2 H N N 490 TRP HA H N N 491 TRP HB2 H N N 492 TRP HB3 H N N 493 TRP HD1 H N N 494 TRP HE1 H N N 495 TRP HE3 H N N 496 TRP HZ2 H N N 497 TRP HZ3 H N N 498 TRP HH2 H N N 499 TRP HXT H N N 500 TYR N N N N 501 TYR CA C N S 502 TYR C C N N 503 TYR O O N N 504 TYR CB C N N 505 TYR CG C Y N 506 TYR CD1 C Y N 507 TYR CD2 C Y N 508 TYR CE1 C Y N 509 TYR CE2 C Y N 510 TYR CZ C Y N 511 TYR OH O N N 512 TYR OXT O N N 513 TYR H H N N 514 TYR H2 H N N 515 TYR HA H N N 516 TYR HB2 H N N 517 TYR HB3 H N N 518 TYR HD1 H N N 519 TYR HD2 H N N 520 TYR HE1 H N N 521 TYR HE2 H N N 522 TYR HH H N N 523 TYR HXT H N N 524 VAL N N N N 525 VAL CA C N S 526 VAL C C N N 527 VAL O O N N 528 VAL CB C N N 529 VAL CG1 C N N 530 VAL CG2 C N N 531 VAL OXT O N N 532 VAL H H N N 533 VAL H2 H N N 534 VAL HA H N N 535 VAL HB H N N 536 VAL HG11 H N N 537 VAL HG12 H N N 538 VAL HG13 H N N 539 VAL HG21 H N N 540 VAL HG22 H N N 541 VAL HG23 H N N 542 VAL HXT H N N 543 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 EDO C1 O1 sing N N 232 EDO C1 C2 sing N N 233 EDO C1 H11 sing N N 234 EDO C1 H12 sing N N 235 EDO O1 HO1 sing N N 236 EDO C2 O2 sing N N 237 EDO C2 H21 sing N N 238 EDO C2 H22 sing N N 239 EDO O2 HO2 sing N N 240 GLN N CA sing N N 241 GLN N H sing N N 242 GLN N H2 sing N N 243 GLN CA C sing N N 244 GLN CA CB sing N N 245 GLN CA HA sing N N 246 GLN C O doub N N 247 GLN C OXT sing N N 248 GLN CB CG sing N N 249 GLN CB HB2 sing N N 250 GLN CB HB3 sing N N 251 GLN CG CD sing N N 252 GLN CG HG2 sing N N 253 GLN CG HG3 sing N N 254 GLN CD OE1 doub N N 255 GLN CD NE2 sing N N 256 GLN NE2 HE21 sing N N 257 GLN NE2 HE22 sing N N 258 GLN OXT HXT sing N N 259 GLU N CA sing N N 260 GLU N H sing N N 261 GLU N H2 sing N N 262 GLU CA C sing N N 263 GLU CA CB sing N N 264 GLU CA HA sing N N 265 GLU C O doub N N 266 GLU C OXT sing N N 267 GLU CB CG sing N N 268 GLU CB HB2 sing N N 269 GLU CB HB3 sing N N 270 GLU CG CD sing N N 271 GLU CG HG2 sing N N 272 GLU CG HG3 sing N N 273 GLU CD OE1 doub N N 274 GLU CD OE2 sing N N 275 GLU OE2 HE2 sing N N 276 GLU OXT HXT sing N N 277 GLY N CA sing N N 278 GLY N H sing N N 279 GLY N H2 sing N N 280 GLY CA C sing N N 281 GLY CA HA2 sing N N 282 GLY CA HA3 sing N N 283 GLY C O doub N N 284 GLY C OXT sing N N 285 GLY OXT HXT sing N N 286 HIS N CA sing N N 287 HIS N H sing N N 288 HIS N H2 sing N N 289 HIS CA C sing N N 290 HIS CA CB sing N N 291 HIS CA HA sing N N 292 HIS C O doub N N 293 HIS C OXT sing N N 294 HIS CB CG sing N N 295 HIS CB HB2 sing N N 296 HIS CB HB3 sing N N 297 HIS CG ND1 sing Y N 298 HIS CG CD2 doub Y N 299 HIS ND1 CE1 doub Y N 300 HIS ND1 HD1 sing N N 301 HIS CD2 NE2 sing Y N 302 HIS CD2 HD2 sing N N 303 HIS CE1 NE2 sing Y N 304 HIS CE1 HE1 sing N N 305 HIS NE2 HE2 sing N N 306 HIS OXT HXT sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 ILE N CA sing N N 310 ILE N H sing N N 311 ILE N H2 sing N N 312 ILE CA C sing N N 313 ILE CA CB sing N N 314 ILE CA HA sing N N 315 ILE C O doub N N 316 ILE C OXT sing N N 317 ILE CB CG1 sing N N 318 ILE CB CG2 sing N N 319 ILE CB HB sing N N 320 ILE CG1 CD1 sing N N 321 ILE CG1 HG12 sing N N 322 ILE CG1 HG13 sing N N 323 ILE CG2 HG21 sing N N 324 ILE CG2 HG22 sing N N 325 ILE CG2 HG23 sing N N 326 ILE CD1 HD11 sing N N 327 ILE CD1 HD12 sing N N 328 ILE CD1 HD13 sing N N 329 ILE OXT HXT sing N N 330 LEU N CA sing N N 331 LEU N H sing N N 332 LEU N H2 sing N N 333 LEU CA C sing N N 334 LEU CA CB sing N N 335 LEU CA HA sing N N 336 LEU C O doub N N 337 LEU C OXT sing N N 338 LEU CB CG sing N N 339 LEU CB HB2 sing N N 340 LEU CB HB3 sing N N 341 LEU CG CD1 sing N N 342 LEU CG CD2 sing N N 343 LEU CG HG sing N N 344 LEU CD1 HD11 sing N N 345 LEU CD1 HD12 sing N N 346 LEU CD1 HD13 sing N N 347 LEU CD2 HD21 sing N N 348 LEU CD2 HD22 sing N N 349 LEU CD2 HD23 sing N N 350 LEU OXT HXT sing N N 351 LYS N CA sing N N 352 LYS N H sing N N 353 LYS N H2 sing N N 354 LYS CA C sing N N 355 LYS CA CB sing N N 356 LYS CA HA sing N N 357 LYS C O doub N N 358 LYS C OXT sing N N 359 LYS CB CG sing N N 360 LYS CB HB2 sing N N 361 LYS CB HB3 sing N N 362 LYS CG CD sing N N 363 LYS CG HG2 sing N N 364 LYS CG HG3 sing N N 365 LYS CD CE sing N N 366 LYS CD HD2 sing N N 367 LYS CD HD3 sing N N 368 LYS CE NZ sing N N 369 LYS CE HE2 sing N N 370 LYS CE HE3 sing N N 371 LYS NZ HZ1 sing N N 372 LYS NZ HZ2 sing N N 373 LYS NZ HZ3 sing N N 374 LYS OXT HXT sing N N 375 MET N CA sing N N 376 MET N H sing N N 377 MET N H2 sing N N 378 MET CA C sing N N 379 MET CA CB sing N N 380 MET CA HA sing N N 381 MET C O doub N N 382 MET C OXT sing N N 383 MET CB CG sing N N 384 MET CB HB2 sing N N 385 MET CB HB3 sing N N 386 MET CG SD sing N N 387 MET CG HG2 sing N N 388 MET CG HG3 sing N N 389 MET SD CE sing N N 390 MET CE HE1 sing N N 391 MET CE HE2 sing N N 392 MET CE HE3 sing N N 393 MET OXT HXT sing N N 394 PHE N CA sing N N 395 PHE N H sing N N 396 PHE N H2 sing N N 397 PHE CA C sing N N 398 PHE CA CB sing N N 399 PHE CA HA sing N N 400 PHE C O doub N N 401 PHE C OXT sing N N 402 PHE CB CG sing N N 403 PHE CB HB2 sing N N 404 PHE CB HB3 sing N N 405 PHE CG CD1 doub Y N 406 PHE CG CD2 sing Y N 407 PHE CD1 CE1 sing Y N 408 PHE CD1 HD1 sing N N 409 PHE CD2 CE2 doub Y N 410 PHE CD2 HD2 sing N N 411 PHE CE1 CZ doub Y N 412 PHE CE1 HE1 sing N N 413 PHE CE2 CZ sing Y N 414 PHE CE2 HE2 sing N N 415 PHE CZ HZ sing N N 416 PHE OXT HXT sing N N 417 PRO N CA sing N N 418 PRO N CD sing N N 419 PRO N H sing N N 420 PRO CA C sing N N 421 PRO CA CB sing N N 422 PRO CA HA sing N N 423 PRO C O doub N N 424 PRO C OXT sing N N 425 PRO CB CG sing N N 426 PRO CB HB2 sing N N 427 PRO CB HB3 sing N N 428 PRO CG CD sing N N 429 PRO CG HG2 sing N N 430 PRO CG HG3 sing N N 431 PRO CD HD2 sing N N 432 PRO CD HD3 sing N N 433 PRO OXT HXT sing N N 434 SER N CA sing N N 435 SER N H sing N N 436 SER N H2 sing N N 437 SER CA C sing N N 438 SER CA CB sing N N 439 SER CA HA sing N N 440 SER C O doub N N 441 SER C OXT sing N N 442 SER CB OG sing N N 443 SER CB HB2 sing N N 444 SER CB HB3 sing N N 445 SER OG HG sing N N 446 SER OXT HXT sing N N 447 THR N CA sing N N 448 THR N H sing N N 449 THR N H2 sing N N 450 THR CA C sing N N 451 THR CA CB sing N N 452 THR CA HA sing N N 453 THR C O doub N N 454 THR C OXT sing N N 455 THR CB OG1 sing N N 456 THR CB CG2 sing N N 457 THR CB HB sing N N 458 THR OG1 HG1 sing N N 459 THR CG2 HG21 sing N N 460 THR CG2 HG22 sing N N 461 THR CG2 HG23 sing N N 462 THR OXT HXT sing N N 463 TRP N CA sing N N 464 TRP N H sing N N 465 TRP N H2 sing N N 466 TRP CA C sing N N 467 TRP CA CB sing N N 468 TRP CA HA sing N N 469 TRP C O doub N N 470 TRP C OXT sing N N 471 TRP CB CG sing N N 472 TRP CB HB2 sing N N 473 TRP CB HB3 sing N N 474 TRP CG CD1 doub Y N 475 TRP CG CD2 sing Y N 476 TRP CD1 NE1 sing Y N 477 TRP CD1 HD1 sing N N 478 TRP CD2 CE2 doub Y N 479 TRP CD2 CE3 sing Y N 480 TRP NE1 CE2 sing Y N 481 TRP NE1 HE1 sing N N 482 TRP CE2 CZ2 sing Y N 483 TRP CE3 CZ3 doub Y N 484 TRP CE3 HE3 sing N N 485 TRP CZ2 CH2 doub Y N 486 TRP CZ2 HZ2 sing N N 487 TRP CZ3 CH2 sing Y N 488 TRP CZ3 HZ3 sing N N 489 TRP CH2 HH2 sing N N 490 TRP OXT HXT sing N N 491 TYR N CA sing N N 492 TYR N H sing N N 493 TYR N H2 sing N N 494 TYR CA C sing N N 495 TYR CA CB sing N N 496 TYR CA HA sing N N 497 TYR C O doub N N 498 TYR C OXT sing N N 499 TYR CB CG sing N N 500 TYR CB HB2 sing N N 501 TYR CB HB3 sing N N 502 TYR CG CD1 doub Y N 503 TYR CG CD2 sing Y N 504 TYR CD1 CE1 sing Y N 505 TYR CD1 HD1 sing N N 506 TYR CD2 CE2 doub Y N 507 TYR CD2 HD2 sing N N 508 TYR CE1 CZ doub Y N 509 TYR CE1 HE1 sing N N 510 TYR CE2 CZ sing Y N 511 TYR CE2 HE2 sing N N 512 TYR CZ OH sing N N 513 TYR OH HH sing N N 514 TYR OXT HXT sing N N 515 VAL N CA sing N N 516 VAL N H sing N N 517 VAL N H2 sing N N 518 VAL CA C sing N N 519 VAL CA CB sing N N 520 VAL CA HA sing N N 521 VAL C O doub N N 522 VAL C OXT sing N N 523 VAL CB CG1 sing N N 524 VAL CB CG2 sing N N 525 VAL CB HB sing N N 526 VAL CG1 HG11 sing N N 527 VAL CG1 HG12 sing N N 528 VAL CG1 HG13 sing N N 529 VAL CG2 HG21 sing N N 530 VAL CG2 HG22 sing N N 531 VAL CG2 HG23 sing N N 532 VAL OXT HXT sing N N 533 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2XSD 'double helix' 2XSD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 10 1_555 0.175 -0.089 -0.006 -6.733 -12.689 7.602 1 A_DA201:DT211_B A 201 ? B 211 ? 20 1 1 A DT 2 1_555 B DA 9 1_555 0.049 -0.072 0.278 -7.515 -15.747 3.985 2 A_DT202:DA210_B A 202 ? B 210 ? 20 1 1 A DG 3 1_555 B DC 8 1_555 -0.003 -0.204 0.031 -17.330 -23.457 -6.058 3 A_DG203:DC209_B A 203 ? B 209 ? 19 1 1 A DC 4 1_555 B DG 7 1_555 0.270 -0.228 -0.205 -8.549 7.221 -1.934 4 A_DC204:DG208_B A 204 ? B 208 ? 19 1 1 A DA 5 1_555 B DT 6 1_555 0.019 -0.142 0.039 -5.940 -6.023 7.027 5 A_DA205:DT207_B A 205 ? B 207 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.190 0.029 -0.046 -0.084 -5.806 0.061 6 A_DT206:DA206_B A 206 ? B 206 ? 20 1 1 A DG 7 1_555 B DC 4 1_555 -0.314 -0.238 -0.146 7.866 -8.590 0.348 7 A_DG207:DC205_B A 207 ? B 205 ? 19 1 1 A DA 8 1_555 B DT 3 1_555 0.049 -0.048 -0.089 1.728 -11.804 0.012 8 A_DA208:DT204_B A 208 ? B 204 ? 20 1 1 A DG 9 1_555 B DC 2 1_555 -0.301 -0.186 0.313 1.489 -19.226 7.128 9 A_DG209:DC203_B A 209 ? B 203 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 0.172 -0.050 0.069 -3.451 -15.170 -0.542 10 A_DG210:DC202_B A 210 ? B 202 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 10 1_555 A DT 2 1_555 B DA 9 1_555 -0.352 -0.557 3.279 -1.061 3.128 29.294 -1.760 0.467 3.214 6.161 2.090 29.475 1 AA_DA201DT202:DA210DT211_BB A 201 ? B 211 ? A 202 ? B 210 ? 1 A DT 2 1_555 B DA 9 1_555 A DG 3 1_555 B DC 8 1_555 -1.378 0.484 3.501 -1.991 3.920 39.132 0.213 1.790 3.594 5.830 2.961 39.369 2 AA_DT202DG203:DC209DA210_BB A 202 ? B 210 ? A 203 ? B 209 ? 1 A DG 3 1_555 B DC 8 1_555 A DC 4 1_555 B DG 7 1_555 1.004 0.579 3.171 -0.166 -9.802 38.714 1.923 -1.490 2.940 -14.505 0.245 39.890 3 AA_DG203DC204:DG208DC209_BB A 203 ? B 209 ? A 204 ? B 208 ? 1 A DC 4 1_555 B DG 7 1_555 A DA 5 1_555 B DT 6 1_555 0.727 -0.746 3.305 -1.017 3.335 31.198 -2.002 -1.534 3.185 6.177 1.884 31.387 4 AA_DC204DA205:DT207DG208_BB A 204 ? B 208 ? A 205 ? B 207 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 -1.179 -0.743 3.120 2.083 5.102 28.019 -2.578 2.828 2.849 10.411 -4.250 28.545 5 AA_DA205DT206:DA206DT207_BB A 205 ? B 207 ? A 206 ? B 206 ? 1 A DT 6 1_555 B DA 5 1_555 A DG 7 1_555 B DC 4 1_555 0.212 0.625 3.229 0.125 7.972 29.587 -0.412 -0.377 3.283 15.264 -0.240 30.619 6 AA_DT206DG207:DC205DA206_BB A 206 ? B 206 ? A 207 ? B 205 ? 1 A DG 7 1_555 B DC 4 1_555 A DA 8 1_555 B DT 3 1_555 -0.828 0.215 3.350 -3.742 5.267 38.881 -0.330 0.767 3.411 7.846 5.575 39.393 7 AA_DG207DA208:DT204DC205_BB A 207 ? B 205 ? A 208 ? B 204 ? 1 A DA 8 1_555 B DT 3 1_555 A DG 9 1_555 B DC 2 1_555 0.661 -0.287 3.296 -4.037 7.181 32.030 -1.704 -1.838 3.058 12.753 7.168 33.045 8 AA_DA208DG209:DC203DT204_BB A 208 ? B 204 ? A 209 ? B 203 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.586 -0.456 3.333 -1.574 3.431 36.764 -1.190 0.709 3.300 5.422 2.488 36.950 9 AA_DG209DG210:DC202DC203_BB A 209 ? B 203 ? A 210 ? B 202 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 1,2-ETHANEDIOL EDO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1E3O _pdbx_initial_refinement_model.details 'PDB ENTRY 1E3O' #