HEADER HYDROLASE 26-NOV-10 2XZP TITLE UPF1 HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF NONSENSE TRANSCRIPTS 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICASE DOMAIN, RESIDUES 295-914; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE RENT1, NONSENSE MRNA REDUCING FACTOR COMPND 6 1, NORF1, UP-FRAMESHIFT SUPPRESSOR 1 HOMOLOG, HUPF1, UP FRAMESHIFT COMPND 7 FACTOR 1; COMPND 8 EC: 3.6.4.13; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS HYDROLASE, NMD, RNA DEGRADATION, ALLOSTERIC REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR S.CHAKRABARTI,U.JAYACHANDRAN,F.BONNEAU,F.FIORINI,C.BASQUIN,S.DOMCKE, AUTHOR 2 H.LE HIR,E.CONTI REVDAT 2 20-DEC-23 2XZP 1 REMARK REVDAT 1 30-MAR-11 2XZP 0 JRNL AUTH S.CHAKRABARTI,U.JAYACHANDRAN,F.BONNEAU,F.FIORINI,C.BASQUIN, JRNL AUTH 2 S.DOMCKE,H.LE HIR,E.CONTI JRNL TITL MOLECULAR MECHANISMS FOR THE RNA-DEPENDENT ATPASE ACTIVITY JRNL TITL 2 OF UPF1 AND ITS REGULATION BY UPF2. JRNL REF MOL.CELL V. 41 693 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 21419344 JRNL DOI 10.1016/J.MOLCEL.2011.02.010 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 84.4029 - 5.8624 1.00 2799 148 0.1769 0.1991 REMARK 3 2 5.8624 - 4.6533 1.00 2715 143 0.1472 0.1538 REMARK 3 3 4.6533 - 4.0651 1.00 2665 140 0.1285 0.1658 REMARK 3 4 4.0651 - 3.6934 1.00 2669 140 0.1523 0.2100 REMARK 3 5 3.6934 - 3.4287 1.00 2667 141 0.1826 0.2346 REMARK 3 6 3.4287 - 3.2265 1.00 2638 139 0.1960 0.2783 REMARK 3 7 3.2265 - 3.0649 1.00 2643 139 0.2093 0.2691 REMARK 3 8 3.0649 - 2.9315 1.00 2674 141 0.2214 0.3057 REMARK 3 9 2.9315 - 2.8186 1.00 2612 137 0.2452 0.3112 REMARK 3 10 2.8186 - 2.7214 0.98 2603 137 0.2960 0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 46.22 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5024 REMARK 3 ANGLE : 0.785 6595 REMARK 3 CHIRALITY : 0.056 756 REMARK 3 PLANARITY : 0.003 861 REMARK 3 DIHEDRAL : 13.270 1757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290046378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : LN2-COOLED FIXED-EXIT SI(III) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : LN2-COOLED DYNAMICALLY BENDABLE REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28118 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 84.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WJV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM CITRATE PH 6.0, 1.5M REMARK 280 SODIUM MALONATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 73.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 73.06000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 73.06000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 73.06000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 73.06000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 73.06000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 73.06000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 73.06000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 73.06000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 73.06000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 73.06000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 73.06000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 73.06000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 73.06000 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 -73.06000 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -73.06000 REMARK 350 BIOMT3 3 0.000000 -1.000000 0.000000 -73.06000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 297 CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 LYS A 319 CD CE NZ REMARK 470 LYS A 321 CE NZ REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 LYS A 349 CE NZ REMARK 470 SER A 352 OG REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 LEU A 373 CG CD1 CD2 REMARK 470 LYS A 375 NZ REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 SER A 398 OG REMARK 470 VAL A 399 CG1 CG2 REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 LYS A 456 CE NZ REMARK 470 LYS A 461 CG CD CE NZ REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 540 NZ REMARK 470 LYS A 547 CD CE NZ REMARK 470 SER A 548 OG REMARK 470 ARG A 549 CD NE CZ NH1 NH2 REMARK 470 LYS A 576 CD CE NZ REMARK 470 LEU A 580 CG CD1 CD2 REMARK 470 LYS A 581 CE NZ REMARK 470 GLU A 583 CD OE1 OE2 REMARK 470 GLU A 586 CG CD OE1 OE2 REMARK 470 LYS A 593 CE NZ REMARK 470 ARG A 596 NE CZ NH1 NH2 REMARK 470 LYS A 599 CE NZ REMARK 470 ARG A 600 NE CZ NH1 NH2 REMARK 470 LYS A 627 CG CD CE NZ REMARK 470 GLN A 629 CD OE1 NE2 REMARK 470 LYS A 673 CG CD CE NZ REMARK 470 LYS A 674 CG CD CE NZ REMARK 470 LYS A 677 CD CE NZ REMARK 470 ARG A 694 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 732 CD CE NZ REMARK 470 LYS A 733 CG CD CE NZ REMARK 470 GLN A 738 CG CD OE1 NE2 REMARK 470 LYS A 744 CE NZ REMARK 470 SER A 760 OG REMARK 470 LYS A 779 CD CE NZ REMARK 470 LYS A 786 CG CD CE NZ REMARK 470 ASP A 788 OD1 OD2 REMARK 470 GLN A 789 CG CD OE1 NE2 REMARK 470 LYS A 816 CG CD CE NZ REMARK 470 GLU A 820 CG CD OE1 OE2 REMARK 470 ASN A 845 CG OD1 ND2 REMARK 470 GLU A 846 CG CD OE1 OE2 REMARK 470 LYS A 877 CD CE NZ REMARK 470 LYS A 881 CG CD CE NZ REMARK 470 LYS A 893 CD CE NZ REMARK 470 LYS A 896 CD CE NZ REMARK 470 ASN A 904 CG OD1 ND2 REMARK 470 GLN A 912 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 328 71.03 -117.69 REMARK 500 LYS A 339 -6.96 72.71 REMARK 500 LYS A 349 -0.28 85.40 REMARK 500 CYS A 457 31.00 70.06 REMARK 500 ASN A 514 -60.87 -91.21 REMARK 500 ASP A 662 103.09 -161.16 REMARK 500 GLU A 718 24.14 45.32 REMARK 500 ARG A 730 41.83 -104.94 REMARK 500 LEU A 813 -158.84 -91.69 REMARK 500 VAL A 842 -48.40 74.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1915 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1916 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1917 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1918 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1919 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XZO RELATED DB: PDB REMARK 900 UPF1 HELICASE - RNA COMPLEX REMARK 900 RELATED ID: 2WJV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN NONSENSE MEDIATED REMARK 900 DECAY FACTORS UPF1 AND UPF2 REMARK 900 RELATED ID: 2WJY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN NONSENSE MEDIATED REMARK 900 DECAY FACTORS UPF1 AND UPF2 ORTHORHOMBIC FORM REMARK 900 RELATED ID: 2IYK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE UPF2-INTERACTING DOMAIN OF NONSENSE REMARK 900 MEDIATED MRNA DECAY FACTOR UPF1 REMARK 900 RELATED ID: 2GJK RELATED DB: PDB REMARK 900 STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE HUMAN UPF1 HELICASE CORE REMARK 900 RELATED ID: 2GK7 RELATED DB: PDB REMARK 900 STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE HUMAN UPF1 HELICASE CORE REMARK 900 RELATED ID: 2GK6 RELATED DB: PDB REMARK 900 STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE HUMAN UPF1 HELICASE CORE DBREF 2XZP A 295 914 UNP Q92900 RENT1_HUMAN 295 914 SEQADV 2XZP GLY A -2 UNP Q92900 EXPRESSION TAG SEQADV 2XZP HIS A -1 UNP Q92900 EXPRESSION TAG SEQADV 2XZP MET A 0 UNP Q92900 EXPRESSION TAG SEQRES 1 A 623 GLY HIS MET ARG TYR GLU ASP ALA TYR GLN TYR GLN ASN SEQRES 2 A 623 ILE PHE GLY PRO LEU VAL LYS LEU GLU ALA ASP TYR ASP SEQRES 3 A 623 LYS LYS LEU LYS GLU SER GLN THR GLN ASP ASN ILE THR SEQRES 4 A 623 VAL ARG TRP ASP LEU GLY LEU ASN LYS LYS ARG ILE ALA SEQRES 5 A 623 TYR PHE THR LEU PRO LYS THR ASP SER ASP MET ARG LEU SEQRES 6 A 623 MET GLN GLY ASP GLU ILE CYS LEU ARG TYR LYS GLY ASP SEQRES 7 A 623 LEU ALA PRO LEU TRP LYS GLY ILE GLY HIS VAL ILE LYS SEQRES 8 A 623 VAL PRO ASP ASN TYR GLY ASP GLU ILE ALA ILE GLU LEU SEQRES 9 A 623 ARG SER SER VAL GLY ALA PRO VAL GLU VAL THR HIS ASN SEQRES 10 A 623 PHE GLN VAL ASP PHE VAL TRP LYS SER THR SER PHE ASP SEQRES 11 A 623 ARG MET GLN SER ALA LEU LYS THR PHE ALA VAL ASP GLU SEQRES 12 A 623 THR SER VAL SER GLY TYR ILE TYR HIS LYS LEU LEU GLY SEQRES 13 A 623 HIS GLU VAL GLU ASP VAL ILE ILE LYS CYS GLN LEU PRO SEQRES 14 A 623 LYS ARG PHE THR ALA GLN GLY LEU PRO ASP LEU ASN HIS SEQRES 15 A 623 SER GLN VAL TYR ALA VAL LYS THR VAL LEU GLN ARG PRO SEQRES 16 A 623 LEU SER LEU ILE GLN GLY PRO PRO GLY THR GLY LYS THR SEQRES 17 A 623 VAL THR SER ALA THR ILE VAL TYR HIS LEU ALA ARG GLN SEQRES 18 A 623 GLY ASN GLY PRO VAL LEU VAL CYS ALA PRO SER ASN ILE SEQRES 19 A 623 ALA VAL ASP GLN LEU THR GLU LYS ILE HIS GLN THR GLY SEQRES 20 A 623 LEU LYS VAL VAL ARG LEU CYS ALA LYS SER ARG GLU ALA SEQRES 21 A 623 ILE ASP SER PRO VAL SER PHE LEU ALA LEU HIS ASN GLN SEQRES 22 A 623 ILE ARG ASN MET ASP SER MET PRO GLU LEU GLN LYS LEU SEQRES 23 A 623 GLN GLN LEU LYS ASP GLU THR GLY GLU LEU SER SER ALA SEQRES 24 A 623 ASP GLU LYS ARG TYR ARG ALA LEU LYS ARG THR ALA GLU SEQRES 25 A 623 ARG GLU LEU LEU MET ASN ALA ASP VAL ILE CYS CYS THR SEQRES 26 A 623 CYS VAL GLY ALA GLY ASP PRO ARG LEU ALA LYS MET GLN SEQRES 27 A 623 PHE ARG SER ILE LEU ILE ASP GLU SER THR GLN ALA THR SEQRES 28 A 623 GLU PRO GLU CYS MET VAL PRO VAL VAL LEU GLY ALA LYS SEQRES 29 A 623 GLN LEU ILE LEU VAL GLY ASP HIS CYS GLN LEU GLY PRO SEQRES 30 A 623 VAL VAL MET CYS LYS LYS ALA ALA LYS ALA GLY LEU SER SEQRES 31 A 623 GLN SER LEU PHE GLU ARG LEU VAL VAL LEU GLY ILE ARG SEQRES 32 A 623 PRO ILE ARG LEU GLN VAL GLN TYR ARG MET HIS PRO ALA SEQRES 33 A 623 LEU SER ALA PHE PRO SER ASN ILE PHE TYR GLU GLY SER SEQRES 34 A 623 LEU GLN ASN GLY VAL THR ALA ALA ASP ARG VAL LYS LYS SEQRES 35 A 623 GLY PHE ASP PHE GLN TRP PRO GLN PRO ASP LYS PRO MET SEQRES 36 A 623 PHE PHE TYR VAL THR GLN GLY GLN GLU GLU ILE ALA SER SEQRES 37 A 623 SER GLY THR SER TYR LEU ASN ARG THR GLU ALA ALA ASN SEQRES 38 A 623 VAL GLU LYS ILE THR THR LYS LEU LEU LYS ALA GLY ALA SEQRES 39 A 623 LYS PRO ASP GLN ILE GLY ILE ILE THR PRO TYR GLU GLY SEQRES 40 A 623 GLN ARG SER TYR LEU VAL GLN TYR MET GLN PHE SER GLY SEQRES 41 A 623 SER LEU HIS THR LYS LEU TYR GLN GLU VAL GLU ILE ALA SEQRES 42 A 623 SER VAL ASP ALA PHE GLN GLY ARG GLU LYS ASP PHE ILE SEQRES 43 A 623 ILE LEU SER CYS VAL ARG ALA ASN GLU HIS GLN GLY ILE SEQRES 44 A 623 GLY PHE LEU ASN ASP PRO ARG ARG LEU ASN VAL ALA LEU SEQRES 45 A 623 THR ARG ALA ARG TYR GLY VAL ILE ILE VAL GLY ASN PRO SEQRES 46 A 623 LYS ALA LEU SER LYS GLN PRO LEU TRP ASN HIS LEU LEU SEQRES 47 A 623 ASN TYR TYR LYS GLU GLN LYS VAL LEU VAL GLU GLY PRO SEQRES 48 A 623 LEU ASN ASN LEU ARG GLU SER LEU MET GLN PHE SER HET GOL A1915 6 HET GOL A1916 6 HET GOL A1917 6 HET MLI A1918 7 HET MLI A1919 7 HETNAM GOL GLYCEROL HETNAM MLI MALONATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 MLI 2(C3 H2 O4 2-) FORMUL 7 HOH *38(H2 O) HELIX 1 1 ASP A 298 SER A 323 1 26 HELIX 2 2 ASP A 351 LEU A 356 5 6 HELIX 3 3 SER A 417 VAL A 432 1 16 HELIX 4 4 GLY A 439 LEU A 446 1 8 HELIX 5 5 HIS A 473 GLN A 484 1 12 HELIX 6 6 LYS A 498 GLN A 512 1 15 HELIX 7 7 ASN A 524 THR A 537 1 14 HELIX 8 8 SER A 557 LEU A 559 5 3 HELIX 9 9 LEU A 561 ILE A 565 1 5 HELIX 10 10 PRO A 572 GLU A 583 1 12 HELIX 11 11 SER A 589 ASN A 609 1 21 HELIX 12 12 CYS A 617 GLY A 621 5 5 HELIX 13 13 SER A 638 GLN A 640 5 3 HELIX 14 14 GLU A 643 LEU A 652 1 10 HELIX 15 15 LYS A 673 ALA A 678 1 6 HELIX 16 16 LEU A 684 LEU A 691 1 8 HELIX 17 17 PRO A 706 PHE A 716 1 11 HELIX 18 18 ALA A 727 ASP A 729 5 3 HELIX 19 19 ARG A 767 ALA A 783 1 17 HELIX 20 20 PRO A 787 GLN A 789 5 3 HELIX 21 21 GLU A 797 SER A 810 1 14 HELIX 22 22 THR A 815 GLU A 820 1 6 HELIX 23 23 VAL A 826 PHE A 829 1 4 HELIX 24 24 PHE A 852 ASN A 854 5 3 HELIX 25 25 PRO A 856 LEU A 863 1 8 HELIX 26 26 PRO A 876 LYS A 881 1 6 HELIX 27 27 PRO A 883 GLN A 895 1 13 SHEET 1 AA 6 PHE A 409 PHE A 413 0 SHEET 2 AA 6 GLY A 359 TYR A 366 -1 O CYS A 363 N ASP A 412 SHEET 3 AA 6 TRP A 374 LYS A 382 -1 O TRP A 374 N TYR A 366 SHEET 4 AA 6 ILE A 391 LEU A 395 -1 O ALA A 392 N ILE A 381 SHEET 5 AA 6 ARG A 341 PHE A 345 -1 O ARG A 341 N LEU A 395 SHEET 6 AA 6 ARG A 332 GLY A 336 -1 O ARG A 332 N TYR A 344 SHEET 1 AB 6 VAL A 541 LEU A 544 0 SHEET 2 AB 6 VAL A 612 THR A 616 1 O VAL A 612 N VAL A 542 SHEET 3 AB 6 VAL A 517 ALA A 521 1 O VAL A 517 N ILE A 613 SHEET 4 AB 6 SER A 632 ILE A 635 1 O SER A 632 N LEU A 518 SHEET 5 AB 6 GLN A 656 GLY A 661 1 O GLN A 656 N ILE A 633 SHEET 6 AB 6 LEU A 487 GLN A 491 1 O SER A 488 N LEU A 659 SHEET 1 AC 5 GLU A 822 ALA A 824 0 SHEET 2 AC 5 ILE A 790 THR A 794 1 O ILE A 790 N GLU A 822 SHEET 3 AC 5 PHE A 836 SER A 840 1 O PHE A 836 N GLY A 791 SHEET 4 AC 5 GLY A 869 GLY A 874 1 O GLY A 869 N ILE A 837 SHEET 5 AC 5 MET A 746 VAL A 750 1 O PHE A 747 N ILE A 872 CISPEP 1 VAL A 399 GLY A 400 0 1.59 SITE 1 AC1 1 ARG A 422 SITE 1 AC2 9 LEU A 509 GLY A 513 ASN A 514 GLY A 515 SITE 2 AC2 9 PRO A 516 VAL A 517 ARG A 631 SER A 632 SITE 3 AC2 9 GOL A1917 SITE 1 AC3 3 ASN A 514 GLY A 515 GOL A1916 SITE 1 AC4 8 PRO A 493 PRO A 494 GLY A 495 THR A 496 SITE 2 AC4 8 GLN A 665 ARG A 703 GLY A 831 ARG A 865 SITE 1 AC5 2 GLY A 495 VAL A 500 CRYST1 146.120 146.120 146.120 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006844 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006844 0.00000