HEADER HYDROLASE 20-JAN-11 2Y6D TITLE THE DISCOVERY OF MMP7 INHIBITORS EXPLOITING A NOVEL SELECTIVITY TITLE 2 TRIGGER COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRILYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MATRIN, MATRIX METALLOPROTEINASE-7, MMP-7, PUMP-1 COMPND 5 PROTEASE, UTERINE METALLOPROTEINASE, MMP7; COMPND 6 EC: 3.4.24.23; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.EDMAN,M.FURBER,P.HEMSLEY,C.JOHANSSON,G.PAIRAUDEAU,J.PETERSEN, AUTHOR 2 M.STOCKS,A.TERVO,A.WARD,E.WELLS,L.WISSLER REVDAT 1 04-MAY-11 2Y6D 0 JRNL AUTH K.EDMAN,M.FURBER,P.HEMSLEY,C.JOHANSSON,G.PAIRAUDEAU, JRNL AUTH 2 J.PETERSEN,M.STOCKS,A.TERVO,A.WARD,E.WELLS,L.WISSLER JRNL TITL THE DISCOVERY OF MMP7 INHIBITORS EXPLOITING A NOVEL JRNL TITL 2 SELECTIVITY TRIGGER. JRNL REF CHEMMEDCHEM V. 6 769 2011 JRNL REFN ISSN 1860-7179 JRNL PMID 21520417 JRNL DOI 10.1002/CMDC.201000550 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.21 REMARK 3 NUMBER OF REFLECTIONS : 21912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.19745 REMARK 3 R VALUE (WORKING SET) : 0.19644 REMARK 3 FREE R VALUE : 0.21610 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 FREE R VALUE TEST SET COUNT : 1190 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.600 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.642 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.273 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.247 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.761 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01 REMARK 3 B22 (A**2) : -0.01 REMARK 3 B33 (A**2) : 0.02 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.645 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1322 ; 0.004 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1801 ; 1.194 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 161 ; 2.715 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;27.555 ;23.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 187 ; 7.220 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.203 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 181 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1042 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 795 ; 0.506 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1273 ; 0.985 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 527 ; 1.453 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 528 ; 2.336 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2Y6D COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-11. REMARK 100 THE PDBE ID CODE IS EBI-47069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21912 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.60 REMARK 200 RESOLUTION RANGE LOW (A) : 54.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.4 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.1 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.29500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.29500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.46200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.29500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.29500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.46200 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 38.29500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 38.29500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 30.46200 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 38.29500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 38.29500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 30.46200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 242 REMARK 465 ASN A 243 REMARK 465 GLY A 244 REMARK 465 ASP A 245 REMARK 465 PRO A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 265 REMARK 465 ARG A 266 REMARK 465 SER A 267 REMARK 465 ASN A 268 REMARK 465 SER A 269 REMARK 465 ARG A 270 REMARK 465 LYS A 271 REMARK 465 LYS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 123 CD NE CZ NH1 NH2 REMARK 470 LYS A 136 NZ REMARK 470 ARG A 165 CZ NH1 NH2 REMARK 470 ASN A 248 N CA CB CG OD1 ND2 REMARK 470 LYS A 250 CD CE NZ REMARK 470 GLY A 264 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 220 O21 TQJ A 1271 2.07 REMARK 500 O2 SO4 A 1270 O HOH A 2102 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 102 -161.00 -117.54 REMARK 500 ASN A 105 2.00 82.26 REMARK 500 HIS A 168 28.87 -145.58 REMARK 500 ASN A 179 -127.79 53.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1267 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 170 OD2 REMARK 620 2 HIS A 196 ND1 95.4 REMARK 620 3 HIS A 183 NE2 118.2 110.8 REMARK 620 4 HIS A 168 NE2 105.2 107.2 117.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1268 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 TQJ A1271 O17 127.8 REMARK 620 3 TQJ A1271 O21 85.6 71.0 REMARK 620 4 HIS A 229 NE2 101.3 87.4 156.6 REMARK 620 5 HIS A 219 NE2 102.8 122.4 89.8 110.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1265 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD1 REMARK 620 2 ASP A 198 OD2 92.5 REMARK 620 3 GLY A 178 O 86.4 178.2 REMARK 620 4 THR A 180 O 89.3 94.2 87.2 REMARK 620 5 GLU A 201 OE2 176.6 90.2 90.9 92.6 REMARK 620 6 GLY A 176 O 83.4 90.6 87.8 171.4 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1266 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 190 O REMARK 620 2 HOH A2043 O 83.3 REMARK 620 3 HOH A2061 O 91.1 89.9 REMARK 620 4 ASP A 158 O 167.7 86.4 82.1 REMARK 620 5 GLY A 192 O 95.5 171.0 81.3 93.6 REMARK 620 6 ASP A 194 OD1 101.3 100.1 164.8 87.1 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TQJ A1271 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y6C RELATED DB: PDB REMARK 900 THE DISCOVERY OF MMP7 INHIBITORS EXPLOITING REMARK 900 A NOVEL SELECTIVITY TRIGGER REMARK 900 RELATED ID: 1MMP RELATED DB: PDB REMARK 900 MATRILYSIN COMPLEXED WITH CARBOXYLATE INHIBITOR REMARK 900 RELATED ID: 1MMR RELATED DB: PDB REMARK 900 MATRILYSIN COMPLEXED WITH SULFODIIMINE INHIBITOR REMARK 900 RELATED ID: 1MMQ RELATED DB: PDB REMARK 900 MATRILYSIN COMPLEXED WITH HYDROXAMATE INHIBITOR DBREF 2Y6D A 100 272 UNP P09237 MMP7_HUMAN 95 267 SEQADV 2Y6D GLY A 99 UNP P09237 EXPRESSION TAG SEQRES 1 A 174 GLY TYR SER LEU PHE PRO ASN SER PRO LYS TRP THR SER SEQRES 2 A 174 LYS VAL VAL THR TYR ARG ILE VAL SER TYR THR ARG ASP SEQRES 3 A 174 LEU PRO HIS ILE THR VAL ASP ARG LEU VAL SER LYS ALA SEQRES 4 A 174 LEU ASN MET TRP GLY LYS GLU ILE PRO LEU HIS PHE ARG SEQRES 5 A 174 LYS VAL VAL TRP GLY THR ALA ASP ILE MET ILE GLY PHE SEQRES 6 A 174 ALA ARG GLY ALA HIS GLY ASP SER TYR PRO PHE ASP GLY SEQRES 7 A 174 PRO GLY ASN THR LEU ALA HIS ALA PHE ALA PRO GLY THR SEQRES 8 A 174 GLY LEU GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU ARG SEQRES 9 A 174 TRP THR ASP GLY SER SER LEU GLY ILE ASN PHE LEU TYR SEQRES 10 A 174 ALA ALA THR HIS GLU LEU GLY HIS SER LEU GLY MET GLY SEQRES 11 A 174 HIS SER SER ASP PRO ASN ALA VAL MET TYR PRO THR TYR SEQRES 12 A 174 GLY ASN GLY ASP PRO GLN ASN PHE LYS LEU SER GLN ASP SEQRES 13 A 174 ASP ILE LYS GLY ILE GLN LYS LEU TYR GLY LYS ARG SER SEQRES 14 A 174 ASN SER ARG LYS LYS HET CA A1265 1 HET CA A1266 1 HET ZN A1267 1 HET ZN A1268 1 HET SO4 A1269 5 HET SO4 A1270 5 HET TQJ A1271 31 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM TQJ N-[(2S)-1-[4-(5-BROMOPYRIDIN-2-YL)PIPERAZIN- HETNAM 2 TQJ 1-YL]SULFONYL-5-PYRIMIDIN-2-YL-PENTAN-2-YL]-N- HETNAM 3 TQJ HYDROXY-METHANAMIDE FORMUL 2 CA 2(CA 2+) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 TQJ C19 H25 BR N6 O4 S FORMUL 6 HOH *104(H2 O) HELIX 1 1 PRO A 126 LYS A 143 1 18 HELIX 2 2 PHE A 213 LEU A 225 1 13 HELIX 3 3 SER A 252 TYR A 263 1 12 SHEET 1 AA 5 HIS A 148 LYS A 151 0 SHEET 2 AA 5 VAL A 113 ILE A 118 1 O VAL A 114 N ARG A 150 SHEET 3 AA 5 ILE A 159 ALA A 164 1 O ILE A 159 N ARG A 117 SHEET 4 AA 5 ALA A 195 ASP A 198 1 O ALA A 195 N GLY A 162 SHEET 5 AA 5 ALA A 182 ALA A 184 -1 O HIS A 183 N HIS A 196 SHEET 1 AB 2 TRP A 203 THR A 204 0 SHEET 2 AB 2 ILE A 211 ASN A 212 1 O ILE A 211 N THR A 204 LINK CA CA A1265 OD1 ASP A 175 1555 1555 2.51 LINK CA CA A1265 OD2 ASP A 198 1555 1555 2.26 LINK CA CA A1265 O GLY A 178 1555 1555 2.35 LINK CA CA A1265 O THR A 180 1555 1555 2.29 LINK CA CA A1265 OE2 GLU A 201 1555 1555 2.22 LINK CA CA A1265 O GLY A 176 1555 1555 2.34 LINK CA CA A1266 O ASP A 158 1555 1555 2.35 LINK CA CA A1266 O HOH A2061 1555 1555 2.34 LINK CA CA A1266 O HOH A2043 1555 1555 2.38 LINK CA CA A1266 OD1 ASP A 194 1555 1555 2.45 LINK CA CA A1266 O GLY A 192 1555 1555 2.29 LINK CA CA A1266 O GLY A 190 1555 1555 2.31 LINK ZN ZN A1267 NE2 HIS A 183 1555 1555 2.08 LINK ZN ZN A1267 ND1 HIS A 196 1555 1555 2.09 LINK ZN ZN A1267 OD2 ASP A 170 1555 1555 1.93 LINK ZN ZN A1267 NE2 HIS A 168 1555 1555 2.01 LINK ZN ZN A1268 NE2 HIS A 219 1555 1555 2.02 LINK ZN ZN A1268 NE2 HIS A 229 1555 1555 1.94 LINK ZN ZN A1268 NE2 HIS A 223 1555 1555 2.05 LINK ZN ZN A1268 O21 TQJ A1271 1555 1555 2.59 LINK ZN ZN A1268 O17 TQJ A1271 1555 1555 2.22 SITE 1 AC1 6 ASP A 175 GLY A 176 GLY A 178 THR A 180 SITE 2 AC1 6 ASP A 198 GLU A 201 SITE 1 AC2 6 ASP A 158 GLY A 190 GLY A 192 ASP A 194 SITE 2 AC2 6 HOH A2043 HOH A2061 SITE 1 AC3 4 HIS A 168 ASP A 170 HIS A 183 HIS A 196 SITE 1 AC4 4 HIS A 219 HIS A 223 HIS A 229 TQJ A1271 SITE 1 AC5 6 PRO A 126 HIS A 127 ILE A 128 ASN A 234 SITE 2 AC5 6 HOH A2100 HOH A2101 SITE 1 AC6 6 ASN A 234 SER A 252 GLN A 253 HOH A2087 SITE 2 AC6 6 HOH A2101 HOH A2102 SITE 1 AC7 18 TYR A 172 LEU A 181 ALA A 182 HIS A 183 SITE 2 AC7 18 TYR A 215 HIS A 219 GLU A 220 HIS A 223 SITE 3 AC7 18 HIS A 229 VAL A 236 TYR A 238 PRO A 239 SITE 4 AC7 18 THR A 240 TYR A 241 ZN A1268 HOH A2057 SITE 5 AC7 18 HOH A2103 HOH A2104 CRYST1 76.590 76.590 60.924 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016414 0.00000