HEADER PROTEIN TRANSPORT 06-FEB-11 2Y8F TITLE STRUCTURE OF THE RAN-BINDING DOMAIN FROM HUMAN RANBP3 (WILD TITLE 2 TYPE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAN-BINDING PROTEIN 3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RAN BINDING DOMAIN, RESIDUES 320-454; COMPND 5 SYNONYM: RANBP3-B; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ISOFORM3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS PROTEIN TRANSPORT, CRM1-MEDIATED NUCLEAR EXPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.LANGER,C.DIAN,V.RYBIN,C.W.MULLER,C.PETOSA REVDAT 2 16-MAR-11 2Y8F 1 JRNL REVDAT 1 16-FEB-11 2Y8F 0 JRNL AUTH K.LANGER,C.DIAN,V.RYBIN,C.W.MULLER,C.PETOSA JRNL TITL INSIGHTS INTO THE FUNCTION OF THE CRM1 COFACTOR RANBP3 FROM JRNL TITL 2 THE STRUCTURE OF ITS RAN-BINDING DOMAIN JRNL REF PLOS ONE V. 6 17011 2011 JRNL REFN ISSN 1932-6203 JRNL PMID 21364925 JRNL DOI 10.1371/JOURNAL.PONE.0017011 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.399 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.38 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.93 REMARK 3 NUMBER OF REFLECTIONS : 33231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1930 REMARK 3 R VALUE (WORKING SET) : 0.1914 REMARK 3 FREE R VALUE : 0.2236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4086 - 4.5230 0.99 3357 153 0.2000 0.2080 REMARK 3 2 4.5230 - 3.5905 1.00 3174 202 0.1638 0.2027 REMARK 3 3 3.5905 - 3.1368 1.00 3189 149 0.1810 0.2020 REMARK 3 4 3.1368 - 2.8500 1.00 3150 158 0.1921 0.2368 REMARK 3 5 2.8500 - 2.6458 1.00 3144 172 0.2024 0.2409 REMARK 3 6 2.6458 - 2.4898 1.00 3129 163 0.1975 0.2568 REMARK 3 7 2.4898 - 2.3651 1.00 3136 161 0.2016 0.2295 REMARK 3 8 2.3651 - 2.2622 1.00 3094 164 0.1964 0.2649 REMARK 3 9 2.2622 - 2.1751 1.00 3096 171 0.2026 0.2575 REMARK 3 10 2.1751 - 2.1000 1.00 3083 186 0.2096 0.2393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.385 REMARK 3 B_SOL : 58.181 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.31 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.7089 REMARK 3 B22 (A**2) : 2.0225 REMARK 3 B33 (A**2) : 0.6864 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3853 REMARK 3 ANGLE : 0.693 5164 REMARK 3 CHIRALITY : 0.053 614 REMARK 3 PLANARITY : 0.001 643 REMARK 3 DIHEDRAL : 15.497 1444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -10.5232 2.2218 -17.4080 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0490 REMARK 3 T33: 0.0430 T12: -0.0117 REMARK 3 T13: -0.0047 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.9322 L22: 1.9838 REMARK 3 L33: 0.1104 L12: -0.5017 REMARK 3 L13: -0.4715 L23: 0.0220 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.1099 S13: 0.0668 REMARK 3 S21: 0.0881 S22: -0.0637 S23: -0.0042 REMARK 3 S31: -0.0170 S32: 0.0402 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -40.5712 -10.4059 -21.6403 REMARK 3 T TENSOR REMARK 3 T11: 0.1285 T22: 0.1697 REMARK 3 T33: 0.1199 T12: 0.0555 REMARK 3 T13: -0.0108 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.7591 L22: 0.8508 REMARK 3 L33: 1.2908 L12: -0.4864 REMARK 3 L13: 0.7051 L23: -0.0869 REMARK 3 S TENSOR REMARK 3 S11: 0.1924 S12: 0.0653 S13: 0.0078 REMARK 3 S21: -0.0536 S22: -0.1060 S23: -0.0659 REMARK 3 S31: 0.1699 S32: 0.3559 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -33.7292 7.4782 1.0053 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.2217 REMARK 3 T33: 0.1029 T12: -0.0264 REMARK 3 T13: 0.0261 T23: -0.0864 REMARK 3 L TENSOR REMARK 3 L11: 0.8567 L22: 0.9146 REMARK 3 L33: 0.9547 L12: 0.5123 REMARK 3 L13: 0.0161 L23: 0.1401 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: -0.3232 S13: 0.1924 REMARK 3 S21: -0.0495 S22: -0.0966 S23: -0.0132 REMARK 3 S31: -0.0301 S32: -0.0598 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -10.0737 -21.4506 -28.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0641 REMARK 3 T33: 0.0935 T12: 0.0097 REMARK 3 T13: 0.0128 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.1784 L22: 0.8217 REMARK 3 L33: 0.7668 L12: 0.3041 REMARK 3 L13: 0.2780 L23: 0.6000 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: -0.0169 S13: -0.0573 REMARK 3 S21: -0.0265 S22: -0.0745 S23: -0.0370 REMARK 3 S31: -0.0314 S32: -0.0897 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Y8F COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-11. REMARK 100 THE PDBE ID CODE IS EBI-47290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 48.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.6 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.7 REMARK 200 R MERGE FOR SHELL (I) : 0.38 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 50 MM TRIS PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.45100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.20500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.70300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.20500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.45100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.70300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 317 REMARK 465 ALA A 318 REMARK 465 MET A 319 REMARK 465 LYS A 320 REMARK 465 VAL A 321 REMARK 465 GLN A 449 REMARK 465 GLU A 450 REMARK 465 GLN A 451 REMARK 465 GLU A 452 REMARK 465 ALA A 453 REMARK 465 LYS A 454 REMARK 465 GLY B 317 REMARK 465 ALA B 318 REMARK 465 MET B 319 REMARK 465 LYS B 320 REMARK 465 VAL B 321 REMARK 465 GLU B 322 REMARK 465 VAL B 323 REMARK 465 ILE B 324 REMARK 465 THR B 325 REMARK 465 GLY B 326 REMARK 465 GLU B 327 REMARK 465 GLU B 328 REMARK 465 ALA B 329 REMARK 465 ALA B 364 REMARK 465 SER B 365 REMARK 465 THR B 366 REMARK 465 ASP B 367 REMARK 465 ASP B 368 REMARK 465 GLY B 369 REMARK 465 THR B 370 REMARK 465 GLU B 413 REMARK 465 ASP B 414 REMARK 465 GLN B 451 REMARK 465 GLU B 452 REMARK 465 ALA B 453 REMARK 465 LYS B 454 REMARK 465 GLY C 317 REMARK 465 ALA C 318 REMARK 465 MET C 319 REMARK 465 LYS C 320 REMARK 465 VAL C 321 REMARK 465 GLU C 322 REMARK 465 VAL C 323 REMARK 465 ILE C 324 REMARK 465 THR C 325 REMARK 465 GLY C 326 REMARK 465 GLU C 327 REMARK 465 GLU C 328 REMARK 465 ALA C 329 REMARK 465 SER C 365 REMARK 465 THR C 366 REMARK 465 ASP C 367 REMARK 465 ASP C 368 REMARK 465 GLU C 448 REMARK 465 GLN C 449 REMARK 465 GLU C 450 REMARK 465 GLN C 451 REMARK 465 GLU C 452 REMARK 465 ALA C 453 REMARK 465 LYS C 454 REMARK 465 SER D 365 REMARK 465 THR D 366 REMARK 465 ASP D 367 REMARK 465 ASP D 368 REMARK 465 GLY D 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 GLU A 448 CG CD OE1 OE2 REMARK 470 LYS B 345 CG CD CE NZ REMARK 470 LYS B 390 CG CD CE NZ REMARK 470 GLU B 402 CG CD OE1 OE2 REMARK 470 MET B 410 CG SD CE REMARK 470 THR B 412 OG1 CG2 REMARK 470 GLN B 415 CG CD OE1 NE2 REMARK 470 GLU B 448 CG CD OE1 OE2 REMARK 470 GLN B 449 CG CD OE1 NE2 REMARK 470 GLU B 450 CG CD OE1 OE2 REMARK 470 MET C 363 CG SD CE REMARK 470 GLN C 372 CG CD OE1 NE2 REMARK 470 LYS C 390 CG CD CE NZ REMARK 470 GLU C 413 CG CD OE1 OE2 REMARK 470 GLN C 415 CG CD OE1 NE2 REMARK 470 LYS C 427 CE NZ REMARK 470 GLU D 328 CG CD OE1 OE2 REMARK 470 ARG D 384 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 454 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 388 81.83 -156.11 REMARK 500 GLU A 413 59.40 -113.59 REMARK 500 ASN B 388 89.86 -156.72 REMARK 500 THR C 412 -134.23 47.36 REMARK 500 GLU C 413 42.07 -86.88 REMARK 500 ASN D 388 87.46 -154.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C1448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D1455 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D1456 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CRF RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE RAN_BP1 DOMAIN OF RAN- REMARK 900 BINDINGPROTEIN-3 REMARK 900 RELATED ID: 2Y8G RELATED DB: PDB REMARK 900 STRUCTURE OF THE RAN-BINDING DOMAIN FROM HUMAN RANBP3 REMARK 900 (E352A-R353V DOUBLE MUTANT) REMARK 999 REMARK 999 SEQUENCE REMARK 999 GAM REMAINING RESIDUES FROM TEV CLEAVAGE SITE DBREF 2Y8F A 320 454 UNP Q9H6Z4 RANB3_HUMAN 320 454 DBREF 2Y8F B 320 454 UNP Q9H6Z4 RANB3_HUMAN 320 454 DBREF 2Y8F C 320 454 UNP Q9H6Z4 RANB3_HUMAN 320 454 DBREF 2Y8F D 320 454 UNP Q9H6Z4 RANB3_HUMAN 320 454 SEQADV 2Y8F GLY A 317 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F ALA A 318 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F MET A 319 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F GLY B 317 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F ALA B 318 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F MET B 319 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F GLY C 317 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F ALA C 318 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F MET C 319 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F GLY D 317 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F ALA D 318 UNP Q9H6Z4 EXPRESSION TAG SEQADV 2Y8F MET D 319 UNP Q9H6Z4 EXPRESSION TAG SEQRES 1 A 138 GLY ALA MET LYS VAL GLU VAL ILE THR GLY GLU GLU ALA SEQRES 2 A 138 GLU SER ASN VAL LEU GLN MET GLN CYS LYS LEU PHE VAL SEQRES 3 A 138 PHE ASP LYS THR SER GLN SER TRP VAL GLU ARG GLY ARG SEQRES 4 A 138 GLY LEU LEU ARG LEU ASN ASP MET ALA SER THR ASP ASP SEQRES 5 A 138 GLY THR LEU GLN SER ARG LEU VAL MET ARG THR GLN GLY SEQRES 6 A 138 SER LEU ARG LEU ILE LEU ASN THR LYS LEU TRP ALA GLN SEQRES 7 A 138 MET GLN ILE ASP LYS ALA SER GLU LYS SER ILE ARG ILE SEQRES 8 A 138 THR ALA MET ASP THR GLU ASP GLN GLY VAL LYS VAL PHE SEQRES 9 A 138 LEU ILE SER ALA SER SER LYS ASP THR GLY GLN LEU TYR SEQRES 10 A 138 ALA ALA LEU HIS HIS ARG ILE LEU ALA LEU ARG SER ARG SEQRES 11 A 138 VAL GLU GLN GLU GLN GLU ALA LYS SEQRES 1 B 138 GLY ALA MET LYS VAL GLU VAL ILE THR GLY GLU GLU ALA SEQRES 2 B 138 GLU SER ASN VAL LEU GLN MET GLN CYS LYS LEU PHE VAL SEQRES 3 B 138 PHE ASP LYS THR SER GLN SER TRP VAL GLU ARG GLY ARG SEQRES 4 B 138 GLY LEU LEU ARG LEU ASN ASP MET ALA SER THR ASP ASP SEQRES 5 B 138 GLY THR LEU GLN SER ARG LEU VAL MET ARG THR GLN GLY SEQRES 6 B 138 SER LEU ARG LEU ILE LEU ASN THR LYS LEU TRP ALA GLN SEQRES 7 B 138 MET GLN ILE ASP LYS ALA SER GLU LYS SER ILE ARG ILE SEQRES 8 B 138 THR ALA MET ASP THR GLU ASP GLN GLY VAL LYS VAL PHE SEQRES 9 B 138 LEU ILE SER ALA SER SER LYS ASP THR GLY GLN LEU TYR SEQRES 10 B 138 ALA ALA LEU HIS HIS ARG ILE LEU ALA LEU ARG SER ARG SEQRES 11 B 138 VAL GLU GLN GLU GLN GLU ALA LYS SEQRES 1 C 138 GLY ALA MET LYS VAL GLU VAL ILE THR GLY GLU GLU ALA SEQRES 2 C 138 GLU SER ASN VAL LEU GLN MET GLN CYS LYS LEU PHE VAL SEQRES 3 C 138 PHE ASP LYS THR SER GLN SER TRP VAL GLU ARG GLY ARG SEQRES 4 C 138 GLY LEU LEU ARG LEU ASN ASP MET ALA SER THR ASP ASP SEQRES 5 C 138 GLY THR LEU GLN SER ARG LEU VAL MET ARG THR GLN GLY SEQRES 6 C 138 SER LEU ARG LEU ILE LEU ASN THR LYS LEU TRP ALA GLN SEQRES 7 C 138 MET GLN ILE ASP LYS ALA SER GLU LYS SER ILE ARG ILE SEQRES 8 C 138 THR ALA MET ASP THR GLU ASP GLN GLY VAL LYS VAL PHE SEQRES 9 C 138 LEU ILE SER ALA SER SER LYS ASP THR GLY GLN LEU TYR SEQRES 10 C 138 ALA ALA LEU HIS HIS ARG ILE LEU ALA LEU ARG SER ARG SEQRES 11 C 138 VAL GLU GLN GLU GLN GLU ALA LYS SEQRES 1 D 138 GLY ALA MET LYS VAL GLU VAL ILE THR GLY GLU GLU ALA SEQRES 2 D 138 GLU SER ASN VAL LEU GLN MET GLN CYS LYS LEU PHE VAL SEQRES 3 D 138 PHE ASP LYS THR SER GLN SER TRP VAL GLU ARG GLY ARG SEQRES 4 D 138 GLY LEU LEU ARG LEU ASN ASP MET ALA SER THR ASP ASP SEQRES 5 D 138 GLY THR LEU GLN SER ARG LEU VAL MET ARG THR GLN GLY SEQRES 6 D 138 SER LEU ARG LEU ILE LEU ASN THR LYS LEU TRP ALA GLN SEQRES 7 D 138 MET GLN ILE ASP LYS ALA SER GLU LYS SER ILE ARG ILE SEQRES 8 D 138 THR ALA MET ASP THR GLU ASP GLN GLY VAL LYS VAL PHE SEQRES 9 D 138 LEU ILE SER ALA SER SER LYS ASP THR GLY GLN LEU TYR SEQRES 10 D 138 ALA ALA LEU HIS HIS ARG ILE LEU ALA LEU ARG SER ARG SEQRES 11 D 138 VAL GLU GLN GLU GLN GLU ALA LYS HET CL A1449 1 HET GOL A1450 6 HET GOL A1451 6 HET GOL A1452 6 HET GOL C1448 6 HET GOL D1455 6 HET GOL D1456 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL FORMUL 5 CL CL 1- FORMUL 6 GOL 6(C3 H8 O3) FORMUL 7 HOH *245(H2 O) HELIX 1 1 SER A 425 SER A 445 1 21 HELIX 2 2 SER B 425 GLU B 450 1 26 HELIX 3 3 SER C 425 SER C 445 1 21 HELIX 4 4 VAL D 321 GLY D 326 1 6 HELIX 5 5 SER D 425 LYS D 454 1 30 SHEET 1 AA 7 LEU A 385 LYS A 390 0 SHEET 2 AA 7 THR A 370 THR A 379 -1 O LEU A 375 N THR A 389 SHEET 3 AA 7 SER A 349 ALA A 364 -1 O LEU A 357 N ARG A 378 SHEET 4 AA 7 ALA A 329 ASP A 344 -1 O ALA A 329 N ALA A 364 SHEET 5 AA 7 VAL A 417 SER A 423 -1 O VAL A 419 N PHE A 343 SHEET 6 AA 7 SER A 404 MET A 410 -1 O ILE A 405 N ILE A 422 SHEET 7 AA 7 ILE A 397 SER A 401 -1 O ASP A 398 N ARG A 406 SHEET 1 BA 7 LEU B 385 LYS B 390 0 SHEET 2 BA 7 SER B 373 THR B 379 -1 O LEU B 375 N THR B 389 SHEET 3 BA 7 SER B 349 ASP B 362 -1 O LEU B 357 N ARG B 378 SHEET 4 BA 7 SER B 331 ASP B 344 -1 O SER B 331 N ASP B 362 SHEET 5 BA 7 VAL B 417 SER B 423 -1 O VAL B 419 N PHE B 343 SHEET 6 BA 7 SER B 404 MET B 410 -1 O ILE B 405 N ILE B 422 SHEET 7 BA 7 ILE B 397 SER B 401 -1 O ASP B 398 N ARG B 406 SHEET 1 CA 7 LEU C 385 LYS C 390 0 SHEET 2 CA 7 GLN C 372 THR C 379 -1 O LEU C 375 N THR C 389 SHEET 3 CA 7 SER C 349 MET C 363 -1 O LEU C 357 N ARG C 378 SHEET 4 CA 7 SER C 331 ASP C 344 -1 O SER C 331 N ASP C 362 SHEET 5 CA 7 VAL C 417 SER C 423 -1 O VAL C 419 N PHE C 343 SHEET 6 CA 7 SER C 404 MET C 410 -1 O ILE C 405 N ILE C 422 SHEET 7 CA 7 ILE C 397 SER C 401 -1 O ASP C 398 N ARG C 406 SHEET 1 DA 7 LEU D 385 LYS D 390 0 SHEET 2 DA 7 GLN D 372 THR D 379 -1 O LEU D 375 N THR D 389 SHEET 3 DA 7 SER D 349 MET D 363 -1 O LEU D 357 N ARG D 378 SHEET 4 DA 7 SER D 331 ASP D 344 -1 O SER D 331 N ASP D 362 SHEET 5 DA 7 GLY D 416 SER D 423 -1 O VAL D 419 N PHE D 343 SHEET 6 DA 7 SER D 404 ASP D 411 -1 O ILE D 405 N ILE D 422 SHEET 7 DA 7 ILE D 397 SER D 401 -1 O ASP D 398 N ARG D 406 SITE 1 AC1 2 LYS A 390 MET A 410 SITE 1 AC2 7 SER A 331 ASP A 362 THR A 370 ILE D 397 SITE 2 AC2 7 TYR D 433 HIS D 437 ARG D 444 SITE 1 AC3 3 HIS A 438 TRP D 392 HOH D2052 SITE 1 AC4 4 MET A 395 GLN A 396 ILE A 397 ARG A 444 SITE 1 AC5 4 PHE C 343 LYS C 345 LYS C 418 VAL C 419 SITE 1 AC6 4 SER A 445 VAL A 447 TRP D 350 ARG D 406 SITE 1 AC7 6 ARG A 359 ARG A 378 ASN D 332 VAL D 333 SITE 2 AC7 6 LEU D 334 GLN D 335 CRYST1 62.902 73.406 120.410 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008305 0.00000