data_2YGI # _entry.id 2YGI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YGI pdb_00002ygi 10.2210/pdb2ygi/pdb PDBE EBI-48028 ? ? WWPDB D_1290048028 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2YGJ _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'METHANOBACTIN MB4' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YGI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-04-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ghazouani, A.' 1 'Basle, A.' 2 'Firbank, S.J.' 3 'Gray, J.' 4 'Dennison, C.' 5 # _citation.id primary _citation.title 'Variations in Methanobactin Structure Influences Copper Utilization by Methane-Oxidizing Bacteria.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 8400 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22582172 _citation.pdbx_database_id_DOI 10.1073/PNAS.1112921109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'El Ghazouani, A.' 1 ? primary 'Basle, A.' 2 ? primary 'Gray, J.' 3 ? primary 'Graham, D.W.' 4 ? primary 'Firbank, S.J.' 5 ? primary 'Dennison, C.' 6 ? # _cell.entry_id 2YGI _cell.length_a 9.072 _cell.length_b 22.535 _cell.length_c 23.572 _cell.angle_alpha 64.79 _cell.angle_beta 86.06 _cell.angle_gamma 91.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YGI _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'METHANOBACTIN HM1' 826.897 4 ? ? ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 4 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(HM7)AS(HM8)AA' _entity_poly.pdbx_seq_one_letter_code_can XASXAA _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HM7 n 1 2 ALA n 1 3 SER n 1 4 HM8 n 1 5 ALA n 1 6 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'METHYLOCYSTIS HIRSUTA' _entity_src_nat.pdbx_ncbi_taxonomy_id 369798 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain CSC1 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2YGI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 2YGI _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YGI A 1 ? 6 ? 2YGI 1 ? 6 ? 1 6 2 1 2YGI B 1 ? 6 ? 2YGI 1 ? 6 ? 1 6 3 1 2YGI C 1 ? 6 ? 2YGI 1 ? 6 ? 1 6 4 1 2YGI D 1 ? 6 ? 2YGI 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 HM7 non-polymer . 3-methylthioethane-pyrazinedione ? 'C8 H10 N2 O3 S2' 246.307 HM8 'L-peptide linking' . '2-[(1S,2R)-1-amino-2-(sulfooxy)propyl]-5-hydroxy-1,3-oxazole-4-carbothioic O-acid' ? 'C7 H10 N2 O7 S2' 298.294 HOH non-polymer . WATER ? 'H2 O' 18.015 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # _exptl.entry_id 2YGI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.02 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '3.8 AMMONIUM SULFATE, 100 MM SODIUM CITRATE PH 5.6.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2011-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.8 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YGI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.44 _reflns.d_resolution_high 0.80 _reflns.number_obs 12760 _reflns.number_all ? _reflns.percent_possible_obs 75.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.30 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.80 _reflns_shell.d_res_low 0.84 _reflns_shell.percent_possible_all 20.2 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.30 _reflns_shell.pdbx_redundancy 3.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YGI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 13445 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 0.80 _refine.ls_percent_reflns_obs 75.8 _refine.ls_R_factor_obs 0.0652 _refine.ls_R_factor_all 0.0763 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.0894 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 685 _refine.ls_number_parameters 2267 _refine.ls_number_restraints 1929 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2YGI _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 5 _refine_analyze.occupancy_sum_hydrogen 117.76 _refine_analyze.occupancy_sum_non_hydrogen 241.00 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 212 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 241 _refine_hist.d_res_high 0.80 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.020 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 2YGI _pdbx_refine.R_factor_all_no_cutoff 0.0763 _pdbx_refine.R_factor_obs_no_cutoff 0.0652 _pdbx_refine.free_R_factor_no_cutoff 0.0894 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 685 _pdbx_refine.R_factor_all_4sig_cutoff 0.0656 _pdbx_refine.R_factor_obs_4sig_cutoff 0.0652 _pdbx_refine.free_R_factor_4sig_cutoff 0.0798 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 11933 # _struct.entry_id 2YGI _struct.title 'Methanobactin HM1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YGI _struct_keywords.pdbx_keywords 'METAL TRANSPORT' _struct_keywords.text 'METAL TRANSPORT, METHANOTROPHS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HM7 1 C ? ? ? 1_555 A ALA 2 N ? ? A HM7 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale2 covale both ? A SER 3 C ? ? ? 1_555 A HM8 4 N ? ? A SER 3 A HM8 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A HM8 4 C ? ? ? 1_555 A ALA 5 N ? ? A HM8 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale4 covale both ? B HM7 1 C ? ? ? 1_555 B ALA 2 N ? ? B HM7 1 B ALA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? B SER 3 C ? ? ? 1_555 B HM8 4 N ? ? B SER 3 B HM8 4 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale6 covale both ? B HM8 4 C ? ? ? 1_555 B ALA 5 N ? ? B HM8 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? C HM7 1 C ? ? ? 1_555 C ALA 2 N ? ? C HM7 1 C ALA 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale8 covale both ? C SER 3 C ? ? ? 1_555 C HM8 4 N ? ? C SER 3 C HM8 4 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale9 covale both ? C HM8 4 C ? ? ? 1_555 C ALA 5 N ? ? C HM8 4 C ALA 5 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? D HM7 1 C ? ? ? 1_555 D ALA 2 N ? ? D HM7 1 D ALA 2 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale11 covale both ? D SER 3 C ? ? ? 1_555 D HM8 4 N ? ? D SER 3 D HM8 4 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale12 covale both ? D HM8 4 C ? ? ? 1_555 D ALA 5 N ? ? D HM8 4 D ALA 5 1_555 ? ? ? ? ? ? ? 1.335 ? ? metalc1 metalc ? ? A HM7 1 NAB ? ? ? 1_555 E CU . CU ? ? A HM7 1 A CU 7 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc2 metalc ? ? A HM7 1 SAE ? ? ? 1_555 E CU . CU ? ? A HM7 1 A CU 7 1_555 ? ? ? ? ? ? ? 2.243 ? ? metalc3 metalc ? ? A HM8 4 NBA ? ? ? 1_555 E CU . CU ? ? A HM8 4 A CU 7 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc4 metalc ? ? A HM8 4 SBG ? ? ? 1_555 E CU . CU ? ? A HM8 4 A CU 7 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc5 metalc ? ? B HM7 1 NAB ? ? ? 1_555 F CU . CU ? ? B HM7 1 B CU 7 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc6 metalc ? ? B HM7 1 SAE ? ? ? 1_555 F CU . CU ? ? B HM7 1 B CU 7 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc7 metalc ? ? B HM8 4 NBA ? ? ? 1_555 F CU . CU ? ? B HM8 4 B CU 7 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc8 metalc ? ? B HM8 4 SBG ? ? ? 1_555 F CU . CU ? ? B HM8 4 B CU 7 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc9 metalc ? ? C HM7 1 NAB ? ? ? 1_555 G CU . CU ? ? C HM7 1 C CU 7 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc10 metalc ? ? C HM7 1 SAE ? ? ? 1_555 G CU . CU ? ? C HM7 1 C CU 7 1_555 ? ? ? ? ? ? ? 2.254 ? ? metalc11 metalc ? ? C HM8 4 NBA ? ? ? 1_555 G CU . CU ? ? C HM8 4 C CU 7 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc12 metalc ? ? C HM8 4 SBG ? ? ? 1_555 G CU . CU ? ? C HM8 4 C CU 7 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc13 metalc ? ? D HM7 1 SAE ? ? ? 1_555 H CU . CU ? ? D HM7 1 D CU 7 1_555 ? ? ? ? ? ? ? 2.243 ? ? metalc14 metalc ? ? D HM7 1 NAB ? ? ? 1_555 H CU . CU ? ? D HM7 1 D CU 7 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc15 metalc ? ? D HM8 4 NBA ? ? ? 1_555 H CU . CU ? ? D HM8 4 D CU 7 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc16 metalc ? ? D HM8 4 SBG ? ? ? 1_555 H CU . CU ? ? D HM8 4 D CU 7 1_555 ? ? ? ? ? ? ? 2.301 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CU 7 ? 2 'BINDING SITE FOR RESIDUE CU A 7' AC2 Software B CU 7 ? 2 'BINDING SITE FOR RESIDUE CU B 7' AC3 Software C CU 7 ? 2 'BINDING SITE FOR RESIDUE CU C 7' AC4 Software D CU 7 ? 2 'BINDING SITE FOR RESIDUE CU D 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HM7 A 1 ? HM7 A 1 . ? 1_555 ? 2 AC1 2 HM8 A 4 ? HM8 A 4 . ? 1_555 ? 3 AC2 2 HM7 B 1 ? HM7 B 1 . ? 1_555 ? 4 AC2 2 HM8 B 4 ? HM8 B 4 . ? 1_555 ? 5 AC3 2 HM7 C 1 ? HM7 C 1 . ? 1_555 ? 6 AC3 2 HM8 C 4 ? HM8 C 4 . ? 1_555 ? 7 AC4 2 HM7 D 1 ? HM7 D 1 . ? 1_555 ? 8 AC4 2 HM8 D 4 ? HM8 D 4 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YGI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YGI _atom_sites.fract_transf_matrix[1][1] 0.110229 _atom_sites.fract_transf_matrix[1][2] 0.003406 _atom_sites.fract_transf_matrix[1][3] -0.010025 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.044397 _atom_sites.fract_transf_matrix[2][3] -0.021102 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.047083 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HM7 1 1 1 HM7 HM7 A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 HM8 4 4 4 HM8 HM8 A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ALA 6 6 6 ALA ALA A . n B 1 1 HM7 1 1 1 HM7 HM7 B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 HM8 4 4 4 HM8 HM8 B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 ALA 6 6 6 ALA ALA B . n C 1 1 HM7 1 1 1 HM7 HM7 C . n C 1 2 ALA 2 2 2 ALA ALA C . n C 1 3 SER 3 3 3 SER SER C . n C 1 4 HM8 4 4 4 HM8 HM8 C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 ALA 6 6 6 ALA ALA C . n D 1 1 HM7 1 1 1 HM7 HM7 D . n D 1 2 ALA 2 2 2 ALA ALA D . n D 1 3 SER 3 3 3 SER SER D . n D 1 4 HM8 4 4 4 HM8 HM8 D . n D 1 5 ALA 5 5 5 ALA ALA D . n D 1 6 ALA 6 6 6 ALA ALA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CU 1 7 7 CU CU A . F 2 CU 1 7 7 CU CU B . G 2 CU 1 7 7 CU CU C . H 2 CU 1 7 7 CU CU D . I 3 HOH 1 2001 2001 HOH HOH A . I 3 HOH 2 2002 2002 HOH HOH A . I 3 HOH 3 2003 2003 HOH HOH A . I 3 HOH 4 2004 2004 HOH HOH A . I 3 HOH 5 2005 2005 HOH HOH A . I 3 HOH 6 2006 2006 HOH HOH A . I 3 HOH 7 2007 2007 HOH HOH A . I 3 HOH 8 2008 2008 HOH HOH A . I 3 HOH 9 2009 2009 HOH HOH A . I 3 HOH 10 2010 2010 HOH HOH A . I 3 HOH 11 2011 2011 HOH HOH A . J 3 HOH 1 2001 2001 HOH HOH B . J 3 HOH 2 2002 2002 HOH HOH B . J 3 HOH 3 2003 2003 HOH HOH B . J 3 HOH 4 2004 2004 HOH HOH B . J 3 HOH 5 2005 2005 HOH HOH B . J 3 HOH 6 2006 2006 HOH HOH B . J 3 HOH 7 2007 2007 HOH HOH B . J 3 HOH 8 2008 2008 HOH HOH B . K 3 HOH 1 2001 2001 HOH HOH C . K 3 HOH 2 2002 2002 HOH HOH C . K 3 HOH 3 2003 2003 HOH HOH C . K 3 HOH 4 2004 2004 HOH HOH C . L 3 HOH 1 2001 2001 HOH HOH D . L 3 HOH 2 2002 2002 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 4 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,I 2 1 B,F,J 3 1 C,G,K 4 1 D,H,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NAB ? A HM7 1 ? A HM7 1 ? 1_555 CU ? E CU . ? A CU 7 ? 1_555 SAE ? A HM7 1 ? A HM7 1 ? 1_555 86.8 ? 2 NAB ? A HM7 1 ? A HM7 1 ? 1_555 CU ? E CU . ? A CU 7 ? 1_555 NBA ? A HM8 4 ? A HM8 4 ? 1_555 110.1 ? 3 SAE ? A HM7 1 ? A HM7 1 ? 1_555 CU ? E CU . ? A CU 7 ? 1_555 NBA ? A HM8 4 ? A HM8 4 ? 1_555 118.5 ? 4 NAB ? A HM7 1 ? A HM7 1 ? 1_555 CU ? E CU . ? A CU 7 ? 1_555 SBG ? A HM8 4 ? A HM8 4 ? 1_555 127.0 ? 5 SAE ? A HM7 1 ? A HM7 1 ? 1_555 CU ? E CU . ? A CU 7 ? 1_555 SBG ? A HM8 4 ? A HM8 4 ? 1_555 128.5 ? 6 NBA ? A HM8 4 ? A HM8 4 ? 1_555 CU ? E CU . ? A CU 7 ? 1_555 SBG ? A HM8 4 ? A HM8 4 ? 1_555 87.9 ? 7 NAB ? B HM7 1 ? B HM7 1 ? 1_555 CU ? F CU . ? B CU 7 ? 1_555 SAE ? B HM7 1 ? B HM7 1 ? 1_555 87.4 ? 8 NAB ? B HM7 1 ? B HM7 1 ? 1_555 CU ? F CU . ? B CU 7 ? 1_555 NBA ? B HM8 4 ? B HM8 4 ? 1_555 109.3 ? 9 SAE ? B HM7 1 ? B HM7 1 ? 1_555 CU ? F CU . ? B CU 7 ? 1_555 NBA ? B HM8 4 ? B HM8 4 ? 1_555 120.0 ? 10 NAB ? B HM7 1 ? B HM7 1 ? 1_555 CU ? F CU . ? B CU 7 ? 1_555 SBG ? B HM8 4 ? B HM8 4 ? 1_555 124.9 ? 11 SAE ? B HM7 1 ? B HM7 1 ? 1_555 CU ? F CU . ? B CU 7 ? 1_555 SBG ? B HM8 4 ? B HM8 4 ? 1_555 129.5 ? 12 NBA ? B HM8 4 ? B HM8 4 ? 1_555 CU ? F CU . ? B CU 7 ? 1_555 SBG ? B HM8 4 ? B HM8 4 ? 1_555 87.6 ? 13 NAB ? C HM7 1 ? C HM7 1 ? 1_555 CU ? G CU . ? C CU 7 ? 1_555 SAE ? C HM7 1 ? C HM7 1 ? 1_555 86.6 ? 14 NAB ? C HM7 1 ? C HM7 1 ? 1_555 CU ? G CU . ? C CU 7 ? 1_555 NBA ? C HM8 4 ? C HM8 4 ? 1_555 110.6 ? 15 SAE ? C HM7 1 ? C HM7 1 ? 1_555 CU ? G CU . ? C CU 7 ? 1_555 NBA ? C HM8 4 ? C HM8 4 ? 1_555 120.1 ? 16 NAB ? C HM7 1 ? C HM7 1 ? 1_555 CU ? G CU . ? C CU 7 ? 1_555 SBG ? C HM8 4 ? C HM8 4 ? 1_555 124.9 ? 17 SAE ? C HM7 1 ? C HM7 1 ? 1_555 CU ? G CU . ? C CU 7 ? 1_555 SBG ? C HM8 4 ? C HM8 4 ? 1_555 129.1 ? 18 NBA ? C HM8 4 ? C HM8 4 ? 1_555 CU ? G CU . ? C CU 7 ? 1_555 SBG ? C HM8 4 ? C HM8 4 ? 1_555 87.8 ? 19 SAE ? D HM7 1 ? D HM7 1 ? 1_555 CU ? H CU . ? D CU 7 ? 1_555 NAB ? D HM7 1 ? D HM7 1 ? 1_555 87.7 ? 20 SAE ? D HM7 1 ? D HM7 1 ? 1_555 CU ? H CU . ? D CU 7 ? 1_555 NBA ? D HM8 4 ? D HM8 4 ? 1_555 118.3 ? 21 NAB ? D HM7 1 ? D HM7 1 ? 1_555 CU ? H CU . ? D CU 7 ? 1_555 NBA ? D HM8 4 ? D HM8 4 ? 1_555 110.2 ? 22 SAE ? D HM7 1 ? D HM7 1 ? 1_555 CU ? H CU . ? D CU 7 ? 1_555 SBG ? D HM8 4 ? D HM8 4 ? 1_555 128.2 ? 23 NAB ? D HM7 1 ? D HM7 1 ? 1_555 CU ? H CU . ? D CU 7 ? 1_555 SBG ? D HM8 4 ? D HM8 4 ? 1_555 126.2 ? 24 NBA ? D HM8 4 ? D HM8 4 ? 1_555 CU ? H CU . ? D CU 7 ? 1_555 SBG ? D HM8 4 ? D HM8 4 ? 1_555 88.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2012-05-23 3 'Structure model' 1 2 2012-10-03 4 'Structure model' 1 3 2016-12-14 5 'Structure model' 1 4 2019-05-22 6 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' Other 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Atomic model' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' pdbx_database_proc 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' refine 4 5 'Structure model' struct_conn 5 6 'Structure model' atom_site 6 6 'Structure model' atom_site_anisotrop 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' database_2 10 6 'Structure model' pdbx_database_status 11 6 'Structure model' pdbx_validate_rmsd_angle 12 6 'Structure model' struct_conn 13 6 'Structure model' struct_conn_type 14 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_pdbx_database_status.recvd_author_approval' 2 5 'Structure model' '_refine.pdbx_ls_cross_valid_method' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_atom_site.auth_atom_id' 5 6 'Structure model' '_atom_site.label_atom_id' 6 6 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 7 6 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 8 6 'Structure model' '_database_2.pdbx_DOI' 9 6 'Structure model' '_database_2.pdbx_database_accession' 10 6 'Structure model' '_pdbx_database_status.status_code_sf' 11 6 'Structure model' '_struct_conn.conn_type_id' 12 6 'Structure model' '_struct_conn.id' 13 6 'Structure model' '_struct_conn.pdbx_dist_value' 14 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 15 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 16 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 6 'Structure model' '_struct_conn_type.id' 30 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHELX phasing . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N A ALA 6 ? ? CA A ALA 6 ? B 1.618 1.459 0.159 0.020 N 2 1 C A ALA 6 ? ? OXT A ALA 6 ? B 1.431 1.229 0.202 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A HM8 4 ? ? C A HM8 4 ? ? N A ALA 5 ? ? 136.27 117.20 19.07 2.20 Y 2 1 N A ALA 6 ? ? CA A ALA 6 ? B CB A ALA 6 ? B 101.43 110.10 -8.67 1.40 N 3 1 CA B HM8 4 ? ? C B HM8 4 ? ? N B ALA 5 ? ? 138.22 117.20 21.02 2.20 Y 4 1 CA C HM8 4 ? ? C C HM8 4 ? ? N C ALA 5 ? ? 138.09 117.20 20.89 2.20 Y 5 1 CB D SER 3 ? B CA D SER 3 ? B C D SER 3 ? ? 121.54 110.10 11.44 1.90 N 6 1 N D SER 3 ? ? CA D SER 3 ? A CB D SER 3 ? A 121.57 110.50 11.07 1.50 N 7 1 N D SER 3 ? ? CA D SER 3 ? B CB D SER 3 ? B 99.79 110.50 -10.71 1.50 N 8 1 CA D HM8 4 ? ? C D HM8 4 ? ? N D ALA 5 ? ? 136.37 117.20 19.17 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER B 3 ? ? -145.16 56.02 2 1 SER C 3 ? ? -144.40 54.20 3 1 SER D 3 ? ? -145.17 42.99 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 CU CU CU N N 14 HM7 CBS C N N 15 HM7 CBR C N N 16 HM7 CAA C N N 17 HM7 NAB N N N 18 HM7 CAI C N N 19 HM7 OAJ O N N 20 HM7 NAH N N N 21 HM7 CAF C N N 22 HM7 OAG O N N 23 HM7 CA C N N 24 HM7 C C N N 25 HM7 SAE S N N 26 HM7 CBU C N N 27 HM7 SBT S N N 28 HM7 OXT O N N 29 HM7 HBS1 H N N 30 HM7 HBS2 H N N 31 HM7 HBR1 H N N 32 HM7 HBR2 H N N 33 HM7 HAJ H N N 34 HM7 HAE H N N 35 HM7 HBU1 H N N 36 HM7 HBU2 H N N 37 HM7 HBU3 H N N 38 HM7 HXT H N N 39 HM8 N N N N 40 HM8 CA C N S 41 HM8 CAV C N R 42 HM8 CAW C N N 43 HM8 OBW O N N 44 HM8 SBV S N N 45 HM8 OBZ O N N 46 HM8 OBY O N N 47 HM8 OBX O N N 48 HM8 CAZ C Y N 49 HM8 NBA N Y N 50 HM8 OBB O Y N 51 HM8 CBC C Y N 52 HM8 OBD O N N 53 HM8 CAB C Y N 54 HM8 C C N N 55 HM8 SBG S N N 56 HM8 OXT O N N 57 HM8 H H N N 58 HM8 H2 H N N 59 HM8 HA H N N 60 HM8 HAV H N N 61 HM8 HAW1 H N N 62 HM8 HAW2 H N N 63 HM8 HAW3 H N N 64 HM8 HBX H N N 65 HM8 HBD H N N 66 HM8 HXT H N N 67 HOH O O N N 68 HOH H1 H N N 69 HOH H2 H N N 70 SER N N N N 71 SER CA C N S 72 SER C C N N 73 SER O O N N 74 SER CB C N N 75 SER OG O N N 76 SER OXT O N N 77 SER H H N N 78 SER H2 H N N 79 SER HA H N N 80 SER HB2 H N N 81 SER HB3 H N N 82 SER HG H N N 83 SER HXT H N N 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 HM7 CBS CBR sing N N 13 HM7 CBR CAA sing N N 14 HM7 CAA NAB doub N N 15 HM7 CAA CAI sing N N 16 HM7 NAB CA sing N N 17 HM7 CAI OAJ sing N N 18 HM7 CAI NAH doub N N 19 HM7 NAH CAF sing N N 20 HM7 CAF OAG doub N N 21 HM7 CAF CA sing N N 22 HM7 CA C doub N N 23 HM7 C SAE sing N N 24 HM7 C OXT sing N N 25 HM7 CBS SBT sing N N 26 HM7 CBU SBT sing N N 27 HM7 CBS HBS1 sing N N 28 HM7 CBS HBS2 sing N Z 29 HM7 CBR HBR1 sing N N 30 HM7 CBR HBR2 sing N N 31 HM7 OAJ HAJ sing N N 32 HM7 SAE HAE sing N N 33 HM7 CBU HBU1 sing N N 34 HM7 CBU HBU2 sing N N 35 HM7 CBU HBU3 sing N N 36 HM7 OXT HXT sing N N 37 HM8 N CA sing N N 38 HM8 CA CAV sing N N 39 HM8 CA CAZ sing N N 40 HM8 CAV CAW sing N N 41 HM8 CAV OBW sing N N 42 HM8 OBW SBV sing N N 43 HM8 SBV OBZ doub N N 44 HM8 SBV OBY doub N N 45 HM8 SBV OBX sing N N 46 HM8 CAZ NBA doub Y N 47 HM8 CAZ OBB sing Y N 48 HM8 NBA CAB sing Y N 49 HM8 OBB CBC sing Y N 50 HM8 CBC OBD sing N N 51 HM8 CBC CAB doub Y N 52 HM8 CAB C sing N N 53 HM8 C SBG doub N N 54 HM8 C OXT sing N N 55 HM8 N H sing N N 56 HM8 N H2 sing N N 57 HM8 CA HA sing N N 58 HM8 CAV HAV sing N N 59 HM8 CAW HAW1 sing N N 60 HM8 CAW HAW2 sing N N 61 HM8 CAW HAW3 sing N N 62 HM8 OBX HBX sing N N 63 HM8 OBD HBD sing N N 64 HM8 OXT HXT sing N N 65 HOH O H1 sing N N 66 HOH O H2 sing N N 67 SER N CA sing N N 68 SER N H sing N N 69 SER N H2 sing N N 70 SER CA C sing N N 71 SER CA CB sing N N 72 SER CA HA sing N N 73 SER C O doub N N 74 SER C OXT sing N N 75 SER CB OG sing N N 76 SER CB HB2 sing N N 77 SER CB HB3 sing N N 78 SER OG HG sing N N 79 SER OXT HXT sing N N 80 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 water HOH #