data_2YK5 # _entry.id 2YK5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YK5 PDBE EBI-48404 WWPDB D_1290048404 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2YK4 unspecified 'STRUCTURE OF NEISSERIA LOS-SPECIFIC SIALYLTRANSFERASE (NST).' PDB 2YK7 unspecified 'STRUCTURE OF NEISSERIA LOS-SPECIFIC SIALYLTRANSFERASE (NST), IN COMPLEX WITH CMP-3F-NEU5AC.' PDB 2YK6 unspecified 'STRUCTURE OF NEISSERIA LOS-SPECIFIC SIALYLTRANSFERASE (NST), IN COMPLEX WITH CDP.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YK5 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-05-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lin, L.Y.C.' 1 'Rakic, B.' 2 'Chiu, C.P.C.' 3 'Lameignere, E.' 4 'Wakarchuk, W.W.' 5 'Withers, S.G.' 6 'Strynadka, N.C.J.' 7 # _citation.id primary _citation.title 'Structure and Mechanism of the Lipooligosaccharide Sialyltransferase from Neisseria Meningitidis' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 37237 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21880735 _citation.pdbx_database_id_DOI 10.1074/JBC.M111.249920 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, L.Y.C.' 1 ? primary 'Rakic, B.' 2 ? primary 'Chiu, C.P.C.' 3 ? primary 'Lameignere, E.' 4 ? primary 'Wakarchuk, W.W.' 5 ? primary 'Withers, S.G.' 6 ? primary 'Strynadka, N.C.J.' 7 ? # _cell.entry_id 2YK5 _cell.length_a 85.747 _cell.length_b 124.137 _cell.length_c 41.930 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YK5 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE 38081.039 1 2.4.99.- ? 'DELTA29NST, RESIDUES 49-370' ? 2 non-polymer syn "CYTIDINE-5'-MONOPHOSPHATE" 323.197 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 6 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 7 water nat water 18.015 220 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ALPHA 2\,3-ST, BETA-GALACTOSIDE ALPHA-2\,3-SIALYL TRANSFERASE, LIPOOLIGOSACCHARIDE SIALYLTRANSFERASE, LOS-SPECIFIC SIALYLTRANSFERASE ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PVNLIFCYTILQ(MSE)KVAERI(MSE)AQHPGERFYVVL(MSE)SENRNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSF NFIPT(MSE)AELKVKA(MSE)LLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTINLIQSSSYLGDEFSVNGTIK RNFAR(MSE)(MSE)IGDWSIAKTRNASDEHYTIFKGLKNI(MSE)DDGRRK(MSE)TYLPLFDASELKAGDETGGTVRI LLGSPDKE(MSE)KEISEKAAKNFNIQYVAPHPRQTYGLSGVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALT (MSE)KDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKLVPR ; _entity_poly.pdbx_seq_one_letter_code_can ;PVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSFNFIPTMAELKVK AMLLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTINLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNAS DEHYTIFKGLKNIMDDGRRKMTYLPLFDASELKAGDETGGTVRILLGSPDKEMKEISEKAAKNFNIQYVAPHPRQTYGLS GVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFD DKLVPR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 VAL n 1 3 ASN n 1 4 LEU n 1 5 ILE n 1 6 PHE n 1 7 CYS n 1 8 TYR n 1 9 THR n 1 10 ILE n 1 11 LEU n 1 12 GLN n 1 13 MSE n 1 14 LYS n 1 15 VAL n 1 16 ALA n 1 17 GLU n 1 18 ARG n 1 19 ILE n 1 20 MSE n 1 21 ALA n 1 22 GLN n 1 23 HIS n 1 24 PRO n 1 25 GLY n 1 26 GLU n 1 27 ARG n 1 28 PHE n 1 29 TYR n 1 30 VAL n 1 31 VAL n 1 32 LEU n 1 33 MSE n 1 34 SER n 1 35 GLU n 1 36 ASN n 1 37 ARG n 1 38 ASN n 1 39 GLU n 1 40 LYS n 1 41 TYR n 1 42 ASP n 1 43 TYR n 1 44 TYR n 1 45 PHE n 1 46 ASN n 1 47 GLN n 1 48 ILE n 1 49 LYS n 1 50 ASP n 1 51 LYS n 1 52 ALA n 1 53 GLU n 1 54 TRP n 1 55 ALA n 1 56 TYR n 1 57 PHE n 1 58 PHE n 1 59 HIS n 1 60 LEU n 1 61 PRO n 1 62 TYR n 1 63 GLY n 1 64 LEU n 1 65 ASN n 1 66 LYS n 1 67 SER n 1 68 PHE n 1 69 ASN n 1 70 PHE n 1 71 ILE n 1 72 PRO n 1 73 THR n 1 74 MSE n 1 75 ALA n 1 76 GLU n 1 77 LEU n 1 78 LYS n 1 79 VAL n 1 80 LYS n 1 81 ALA n 1 82 MSE n 1 83 LEU n 1 84 LEU n 1 85 PRO n 1 86 LYS n 1 87 VAL n 1 88 LYS n 1 89 ARG n 1 90 ILE n 1 91 TYR n 1 92 LEU n 1 93 ALA n 1 94 SER n 1 95 LEU n 1 96 GLU n 1 97 LYS n 1 98 VAL n 1 99 SER n 1 100 ILE n 1 101 ALA n 1 102 ALA n 1 103 PHE n 1 104 LEU n 1 105 SER n 1 106 THR n 1 107 TYR n 1 108 PRO n 1 109 ASP n 1 110 ALA n 1 111 GLU n 1 112 ILE n 1 113 LYS n 1 114 THR n 1 115 PHE n 1 116 ASP n 1 117 ASP n 1 118 GLY n 1 119 THR n 1 120 ILE n 1 121 ASN n 1 122 LEU n 1 123 ILE n 1 124 GLN n 1 125 SER n 1 126 SER n 1 127 SER n 1 128 TYR n 1 129 LEU n 1 130 GLY n 1 131 ASP n 1 132 GLU n 1 133 PHE n 1 134 SER n 1 135 VAL n 1 136 ASN n 1 137 GLY n 1 138 THR n 1 139 ILE n 1 140 LYS n 1 141 ARG n 1 142 ASN n 1 143 PHE n 1 144 ALA n 1 145 ARG n 1 146 MSE n 1 147 MSE n 1 148 ILE n 1 149 GLY n 1 150 ASP n 1 151 TRP n 1 152 SER n 1 153 ILE n 1 154 ALA n 1 155 LYS n 1 156 THR n 1 157 ARG n 1 158 ASN n 1 159 ALA n 1 160 SER n 1 161 ASP n 1 162 GLU n 1 163 HIS n 1 164 TYR n 1 165 THR n 1 166 ILE n 1 167 PHE n 1 168 LYS n 1 169 GLY n 1 170 LEU n 1 171 LYS n 1 172 ASN n 1 173 ILE n 1 174 MSE n 1 175 ASP n 1 176 ASP n 1 177 GLY n 1 178 ARG n 1 179 ARG n 1 180 LYS n 1 181 MSE n 1 182 THR n 1 183 TYR n 1 184 LEU n 1 185 PRO n 1 186 LEU n 1 187 PHE n 1 188 ASP n 1 189 ALA n 1 190 SER n 1 191 GLU n 1 192 LEU n 1 193 LYS n 1 194 ALA n 1 195 GLY n 1 196 ASP n 1 197 GLU n 1 198 THR n 1 199 GLY n 1 200 GLY n 1 201 THR n 1 202 VAL n 1 203 ARG n 1 204 ILE n 1 205 LEU n 1 206 LEU n 1 207 GLY n 1 208 SER n 1 209 PRO n 1 210 ASP n 1 211 LYS n 1 212 GLU n 1 213 MSE n 1 214 LYS n 1 215 GLU n 1 216 ILE n 1 217 SER n 1 218 GLU n 1 219 LYS n 1 220 ALA n 1 221 ALA n 1 222 LYS n 1 223 ASN n 1 224 PHE n 1 225 ASN n 1 226 ILE n 1 227 GLN n 1 228 TYR n 1 229 VAL n 1 230 ALA n 1 231 PRO n 1 232 HIS n 1 233 PRO n 1 234 ARG n 1 235 GLN n 1 236 THR n 1 237 TYR n 1 238 GLY n 1 239 LEU n 1 240 SER n 1 241 GLY n 1 242 VAL n 1 243 THR n 1 244 THR n 1 245 LEU n 1 246 ASN n 1 247 SER n 1 248 PRO n 1 249 TYR n 1 250 VAL n 1 251 ILE n 1 252 GLU n 1 253 ASP n 1 254 TYR n 1 255 ILE n 1 256 LEU n 1 257 ARG n 1 258 GLU n 1 259 ILE n 1 260 LYS n 1 261 LYS n 1 262 ASN n 1 263 PRO n 1 264 HIS n 1 265 THR n 1 266 ARG n 1 267 TYR n 1 268 GLU n 1 269 ILE n 1 270 TYR n 1 271 THR n 1 272 PHE n 1 273 PHE n 1 274 SER n 1 275 GLY n 1 276 ALA n 1 277 ALA n 1 278 LEU n 1 279 THR n 1 280 MSE n 1 281 LYS n 1 282 ASP n 1 283 PHE n 1 284 PRO n 1 285 ASN n 1 286 VAL n 1 287 HIS n 1 288 VAL n 1 289 TYR n 1 290 ALA n 1 291 LEU n 1 292 LYS n 1 293 PRO n 1 294 ALA n 1 295 SER n 1 296 LEU n 1 297 PRO n 1 298 GLU n 1 299 ASP n 1 300 TYR n 1 301 TRP n 1 302 LEU n 1 303 LYS n 1 304 PRO n 1 305 VAL n 1 306 TYR n 1 307 ALA n 1 308 LEU n 1 309 PHE n 1 310 THR n 1 311 GLN n 1 312 SER n 1 313 GLY n 1 314 ILE n 1 315 PRO n 1 316 ILE n 1 317 LEU n 1 318 THR n 1 319 PHE n 1 320 ASP n 1 321 ASP n 1 322 LYS n 1 323 LEU n 1 324 VAL n 1 325 PRO n 1 326 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain '126E / NRCC4010' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'NEISSERIA MENINGITIDIS SEROGROUP B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 491 _entity_src_gen.pdbx_gene_src_variant 'L1 IMMUNOTYPE' _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET-41B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LST_NEIMB _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P72097 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YK5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 322 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P72097 _struct_ref_seq.db_align_beg 49 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 370 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 49 _struct_ref_seq.pdbx_auth_seq_align_end 370 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YK5 LEU A 323 ? UNP P72097 ? ? 'expression tag' 371 1 1 2YK5 VAL A 324 ? UNP P72097 ? ? 'expression tag' 372 2 1 2YK5 PRO A 325 ? UNP P72097 ? ? 'expression tag' 373 3 1 2YK5 ARG A 326 ? UNP P72097 ? ? 'expression tag' 374 4 1 2YK5 TRP A 54 ? UNP P72097 ARG 102 variant 102 5 1 2YK5 ALA A 81 ? UNP P72097 SER 129 variant 129 6 1 2YK5 ILE A 120 ? UNP P72097 GLY 168 variant 168 7 1 2YK5 ALA A 194 ? UNP P72097 THR 242 variant 242 8 1 2YK5 ASN A 225 ? UNP P72097 LYS 273 variant 273 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YK5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PROTEIN WAS CRYSTALLIZED BY VAPOR DIFFUSION METHODS USING DROPS OF PROTEIN MIXED WITH AN EQUAL VOLUME OF PRECIPITANT: 100 MM SODIUM ACETATE (PH 4.2 - 4.4) 1.7 M DI-AMMONIUM SULFATE ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL, SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.980 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength 0.980 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YK5 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 70.53 _reflns.d_resolution_high 2.33 _reflns.number_obs 19839 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.01 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.33 _reflns_shell.d_res_low 2.41 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.04 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.89 _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YK5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 18879 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 70.53 _refine.ls_d_res_high 2.32 _refine.ls_percent_reflns_obs 99.03 _refine.ls_R_factor_obs 0.17881 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17645 _refine.ls_R_factor_R_free 0.22334 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1013 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.919 _refine.B_iso_mean 19.863 _refine.aniso_B[1][1] -0.28 _refine.aniso_B[2][2] 0.16 _refine.aniso_B[3][3] 0.12 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.266 _refine.pdbx_overall_ESU_R_Free 0.208 _refine.overall_SU_ML 0.122 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.898 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2648 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 65 _refine_hist.number_atoms_solvent 220 _refine_hist.number_atoms_total 2933 _refine_hist.d_res_high 2.32 _refine_hist.d_res_low 70.53 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 2776 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.681 1.991 ? 3751 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.256 5.000 ? 325 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.498 23.740 ? 123 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.721 15.000 ? 479 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.688 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.122 0.200 ? 403 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 2054 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.953 1.500 ? 1631 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.776 2.000 ? 2646 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.831 3.000 ? 1145 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.464 4.500 ? 1105 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.321 _refine_ls_shell.d_res_low 2.381 _refine_ls_shell.number_reflns_R_work 1203 _refine_ls_shell.R_factor_R_work 0.195 _refine_ls_shell.percent_reflns_obs 86.74 _refine_ls_shell.R_factor_R_free 0.254 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 2YK5 _struct.title 'Structure of Neisseria LOS-specific sialyltransferase (NST), in complex with CMP.' _struct.pdbx_descriptor 'CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE (E.C.2.4.99.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YK5 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 9 ? GLN A 22 ? THR A 57 GLN A 70 1 ? 14 HELX_P HELX_P2 2 ASN A 38 ? ALA A 52 ? ASN A 86 ALA A 100 1 ? 15 HELX_P HELX_P3 3 THR A 73 ? MSE A 82 ? THR A 121 MSE A 130 1 ? 10 HELX_P HELX_P4 4 LEU A 95 ? ILE A 100 ? LEU A 143 ILE A 148 1 ? 6 HELX_P HELX_P5 5 ILE A 100 ? SER A 105 ? ILE A 148 SER A 153 1 ? 6 HELX_P HELX_P6 6 GLY A 118 ? ILE A 123 ? GLY A 166 ILE A 171 5 ? 6 HELX_P HELX_P7 7 GLN A 124 ? GLY A 130 ? GLN A 172 GLY A 178 5 ? 7 HELX_P HELX_P8 8 GLY A 130 ? SER A 134 ? GLY A 178 SER A 182 5 ? 5 HELX_P HELX_P9 9 THR A 138 ? ARG A 157 ? THR A 186 ARG A 205 1 ? 20 HELX_P HELX_P10 10 ASP A 210 ? GLU A 212 ? ASP A 258 GLU A 260 5 ? 3 HELX_P HELX_P11 11 MSE A 213 ? PHE A 224 ? MSE A 261 PHE A 272 1 ? 12 HELX_P HELX_P12 12 VAL A 250 ? ASN A 262 ? VAL A 298 ASN A 310 1 ? 13 HELX_P HELX_P13 13 GLY A 275 ? LYS A 281 ? GLY A 323 LYS A 329 1 ? 7 HELX_P HELX_P14 14 PRO A 297 ? TRP A 301 ? PRO A 345 TRP A 349 5 ? 5 HELX_P HELX_P15 15 LEU A 302 ? SER A 312 ? LEU A 350 SER A 360 1 ? 11 HELX_P HELX_P16 16 ASP A 320 ? VAL A 324 ? ASP A 368 VAL A 372 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A GLN 12 C ? ? ? 1_555 A MSE 13 N ? ? A GLN 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.341 ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A LYS 14 N ? ? A MSE 61 A LYS 62 1_555 ? ? ? ? ? ? ? 1.347 ? covale3 covale both ? A ILE 19 C ? ? ? 1_555 A MSE 20 N ? ? A ILE 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.340 ? covale4 covale both ? A MSE 20 C ? ? ? 1_555 A ALA 21 N ? ? A MSE 68 A ALA 69 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale both ? A LEU 32 C ? ? ? 1_555 A MSE 33 N ? ? A LEU 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.322 ? covale6 covale both ? A MSE 33 C ? ? ? 1_555 A SER 34 N ? ? A MSE 81 A SER 82 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale both ? A THR 73 C ? ? ? 1_555 A MSE 74 N ? ? A THR 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale both ? A MSE 74 C ? ? ? 1_555 A ALA 75 N ? ? A MSE 122 A ALA 123 1_555 ? ? ? ? ? ? ? 1.326 ? covale9 covale both ? A ALA 81 C ? ? ? 1_555 A MSE 82 N ? ? A ALA 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.335 ? covale10 covale both ? A MSE 82 C ? ? ? 1_555 A LEU 83 N ? ? A MSE 130 A LEU 131 1_555 ? ? ? ? ? ? ? 1.318 ? covale11 covale both ? A ARG 145 C ? ? ? 1_555 A MSE 146 N ? ? A ARG 193 A MSE 194 1_555 ? ? ? ? ? ? ? 1.335 ? covale12 covale both ? A MSE 146 C ? ? ? 1_555 A MSE 147 N ? ? A MSE 194 A MSE 195 1_555 ? ? ? ? ? ? ? 1.341 ? covale13 covale both ? A MSE 147 C ? ? ? 1_555 A ILE 148 N ? ? A MSE 195 A ILE 196 1_555 ? ? ? ? ? ? ? 1.345 ? covale14 covale both ? A ILE 173 C ? ? ? 1_555 A MSE 174 N ? ? A ILE 221 A MSE 222 1_555 ? ? ? ? ? ? ? 1.345 ? covale15 covale both ? A MSE 174 C ? ? ? 1_555 A ASP 175 N ? ? A MSE 222 A ASP 223 1_555 ? ? ? ? ? ? ? 1.343 ? covale16 covale both ? A LYS 180 C ? ? ? 1_555 A MSE 181 N ? ? A LYS 228 A MSE 229 1_555 ? ? ? ? ? ? ? 1.338 ? covale17 covale both ? A MSE 181 C ? ? ? 1_555 A THR 182 N ? ? A MSE 229 A THR 230 1_555 ? ? ? ? ? ? ? 1.325 ? covale18 covale both ? A GLU 212 C ? ? ? 1_555 A MSE 213 N ? ? A GLU 260 A MSE 261 1_555 ? ? ? ? ? ? ? 1.335 ? covale19 covale both ? A MSE 213 C ? ? ? 1_555 A LYS 214 N ? ? A MSE 261 A LYS 262 1_555 ? ? ? ? ? ? ? 1.339 ? covale20 covale both ? A THR 279 C ? ? ? 1_555 A MSE 280 N ? ? A THR 327 A MSE 328 1_555 ? ? ? ? ? ? ? 1.339 ? covale21 covale both ? A MSE 280 C ? ? ? 1_555 A LYS 281 N ? ? A MSE 328 A LYS 329 1_555 ? ? ? ? ? ? ? 1.326 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 4 ? AC ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AB 1 2 ? parallel AB 2 3 ? parallel AB 3 4 ? parallel AC 1 2 ? parallel AC 2 3 ? parallel AC 3 4 ? parallel AC 4 5 ? parallel AC 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ASN A 3 ? CYS A 7 ? ASN A 51 CYS A 55 AA 2 PHE A 28 ? SER A 34 ? PHE A 76 SER A 82 AA 3 TRP A 54 ? HIS A 59 ? TRP A 102 HIS A 107 AB 1 ARG A 89 ? ALA A 93 ? ARG A 137 ALA A 141 AB 2 GLU A 111 ? PHE A 115 ? GLU A 159 PHE A 163 AB 3 GLU A 162 ? THR A 165 ? GLU A 210 THR A 213 AB 4 LYS A 180 ? TYR A 183 ? LYS A 228 TYR A 231 AC 1 THR A 243 ? THR A 244 ? THR A 291 THR A 292 AC 2 TYR A 228 ? ALA A 230 ? TYR A 276 ALA A 278 AC 3 THR A 201 ? LEU A 206 ? THR A 249 LEU A 254 AC 4 ARG A 266 ? THR A 271 ? ARG A 314 THR A 319 AC 5 VAL A 286 ? PRO A 293 ? VAL A 334 PRO A 341 AC 6 ILE A 316 ? PHE A 319 ? ILE A 364 PHE A 367 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 5 ? N ILE A 53 O TYR A 29 ? O TYR A 77 AA 2 3 N VAL A 30 ? N VAL A 78 O TRP A 54 ? O TRP A 102 AB 1 2 N ILE A 90 ? N ILE A 138 O GLU A 111 ? O GLU A 159 AB 2 3 N THR A 114 ? N THR A 162 O GLU A 162 ? O GLU A 210 AB 3 4 N HIS A 163 ? N HIS A 211 O LYS A 180 ? O LYS A 228 AC 1 2 O THR A 243 ? O THR A 291 N VAL A 229 ? N VAL A 277 AC 2 3 N TYR A 228 ? N TYR A 276 O ARG A 203 ? O ARG A 251 AC 3 4 N VAL A 202 ? N VAL A 250 O ARG A 266 ? O ARG A 314 AC 4 5 N ILE A 269 ? N ILE A 317 O HIS A 287 ? O HIS A 335 AC 5 6 N LYS A 292 ? N LYS A 340 O LEU A 317 ? O LEU A 365 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 18 'BINDING SITE FOR RESIDUE C A 1375' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE PO4 A 1376' AC3 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE 1PE A 1377' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1378' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 1379' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1380' AC7 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 1381' AC8 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE EDO A 1382' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 LEU A 11 ? LEU A 59 . ? 2_665 ? 2 AC1 18 LEU A 206 ? LEU A 254 . ? 1_555 ? 3 AC1 18 GLY A 207 ? GLY A 255 . ? 1_555 ? 4 AC1 18 ALA A 230 ? ALA A 278 . ? 1_555 ? 5 AC1 18 HIS A 232 ? HIS A 280 . ? 1_555 ? 6 AC1 18 PRO A 233 ? PRO A 281 . ? 1_555 ? 7 AC1 18 VAL A 250 ? VAL A 298 . ? 1_555 ? 8 AC1 18 ILE A 251 ? ILE A 299 . ? 1_555 ? 9 AC1 18 GLU A 252 ? GLU A 300 . ? 1_555 ? 10 AC1 18 SER A 274 ? SER A 322 . ? 1_555 ? 11 AC1 18 GLY A 275 ? GLY A 323 . ? 1_555 ? 12 AC1 18 ALA A 276 ? ALA A 324 . ? 1_555 ? 13 AC1 18 PO4 C . ? PO4 A 1376 . ? 1_555 ? 14 AC1 18 HOH J . ? HOH A 2083 . ? 1_555 ? 15 AC1 18 HOH J . ? HOH A 2174 . ? 1_555 ? 16 AC1 18 HOH J . ? HOH A 2198 . ? 1_555 ? 17 AC1 18 HOH J . ? HOH A 2216 . ? 1_555 ? 18 AC1 18 HOH J . ? HOH A 2217 . ? 1_555 ? 19 AC2 9 ASN A 69 ? ASN A 117 . ? 2_665 ? 20 AC2 9 PHE A 70 ? PHE A 118 . ? 2_665 ? 21 AC2 9 HIS A 232 ? HIS A 280 . ? 1_555 ? 22 AC2 9 ARG A 234 ? ARG A 282 . ? 1_555 ? 23 AC2 9 C B . ? C A 1375 . ? 1_555 ? 24 AC2 9 HOH J . ? HOH A 2006 . ? 2_665 ? 25 AC2 9 HOH J . ? HOH A 2217 . ? 1_555 ? 26 AC2 9 HOH J . ? HOH A 2218 . ? 1_555 ? 27 AC2 9 HOH J . ? HOH A 2219 . ? 1_555 ? 28 AC3 9 ASN A 65 ? ASN A 113 . ? 1_555 ? 29 AC3 9 SER A 67 ? SER A 115 . ? 1_555 ? 30 AC3 9 LEU A 95 ? LEU A 143 . ? 2_665 ? 31 AC3 9 GLU A 96 ? GLU A 144 . ? 2_665 ? 32 AC3 9 VAL A 98 ? VAL A 146 . ? 2_665 ? 33 AC3 9 SER A 99 ? SER A 147 . ? 2_665 ? 34 AC3 9 ALA A 102 ? ALA A 150 . ? 1_555 ? 35 AC3 9 THR A 106 ? THR A 154 . ? 1_555 ? 36 AC3 9 HOH J . ? HOH A 2047 . ? 1_555 ? 37 AC4 4 ASN A 38 ? ASN A 86 . ? 1_555 ? 38 AC4 4 GLU A 39 ? GLU A 87 . ? 1_555 ? 39 AC4 4 LYS A 155 ? LYS A 203 . ? 2_664 ? 40 AC4 4 ARG A 178 ? ARG A 226 . ? 2_664 ? 41 AC5 6 HIS A 23 ? HIS A 71 . ? 3_645 ? 42 AC5 6 GLU A 26 ? GLU A 74 . ? 3_645 ? 43 AC5 6 ARG A 89 ? ARG A 137 . ? 4_555 ? 44 AC5 6 ARG A 203 ? ARG A 251 . ? 1_555 ? 45 AC5 6 ASN A 225 ? ASN A 273 . ? 1_555 ? 46 AC5 6 HOH J . ? HOH A 2220 . ? 1_555 ? 47 AC6 4 GLY A 130 ? GLY A 178 . ? 1_555 ? 48 AC6 4 ASP A 131 ? ASP A 179 . ? 1_555 ? 49 AC6 4 GLU A 132 ? GLU A 180 . ? 1_555 ? 50 AC6 4 SER A 240 ? SER A 288 . ? 1_556 ? 51 AC7 6 LEU A 11 ? LEU A 59 . ? 2_665 ? 52 AC7 6 VAL A 15 ? VAL A 63 . ? 2_665 ? 53 AC7 6 ASP A 116 ? ASP A 164 . ? 1_555 ? 54 AC7 6 GLY A 118 ? GLY A 166 . ? 1_555 ? 55 AC7 6 HOH J . ? HOH A 2005 . ? 2_665 ? 56 AC7 6 HOH J . ? HOH A 2084 . ? 1_555 ? 57 AC8 8 LYS A 40 ? LYS A 88 . ? 2_665 ? 58 AC8 8 PRO A 231 ? PRO A 279 . ? 1_555 ? 59 AC8 8 LEU A 245 ? LEU A 293 . ? 1_555 ? 60 AC8 8 TYR A 249 ? TYR A 297 . ? 1_555 ? 61 AC8 8 VAL A 250 ? VAL A 298 . ? 1_555 ? 62 AC8 8 ILE A 251 ? ILE A 299 . ? 1_555 ? 63 AC8 8 TYR A 254 ? TYR A 302 . ? 1_555 ? 64 AC8 8 HOH J . ? HOH A 2174 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YK5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YK5 _atom_sites.fract_transf_matrix[1][1] 0.011662 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008056 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023849 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 49 49 PRO PRO A . n A 1 2 VAL 2 50 50 VAL VAL A . n A 1 3 ASN 3 51 51 ASN ASN A . n A 1 4 LEU 4 52 52 LEU LEU A . n A 1 5 ILE 5 53 53 ILE ILE A . n A 1 6 PHE 6 54 54 PHE PHE A . n A 1 7 CYS 7 55 55 CYS CYS A . n A 1 8 TYR 8 56 56 TYR TYR A . n A 1 9 THR 9 57 57 THR THR A . n A 1 10 ILE 10 58 58 ILE ILE A . n A 1 11 LEU 11 59 59 LEU LEU A . n A 1 12 GLN 12 60 60 GLN GLN A . n A 1 13 MSE 13 61 61 MSE MSE A . n A 1 14 LYS 14 62 62 LYS LYS A . n A 1 15 VAL 15 63 63 VAL VAL A . n A 1 16 ALA 16 64 64 ALA ALA A . n A 1 17 GLU 17 65 65 GLU GLU A . n A 1 18 ARG 18 66 66 ARG ARG A . n A 1 19 ILE 19 67 67 ILE ILE A . n A 1 20 MSE 20 68 68 MSE MSE A . n A 1 21 ALA 21 69 69 ALA ALA A . n A 1 22 GLN 22 70 70 GLN GLN A . n A 1 23 HIS 23 71 71 HIS HIS A . n A 1 24 PRO 24 72 72 PRO PRO A . n A 1 25 GLY 25 73 73 GLY GLY A . n A 1 26 GLU 26 74 74 GLU GLU A . n A 1 27 ARG 27 75 75 ARG ARG A . n A 1 28 PHE 28 76 76 PHE PHE A . n A 1 29 TYR 29 77 77 TYR TYR A . n A 1 30 VAL 30 78 78 VAL VAL A . n A 1 31 VAL 31 79 79 VAL VAL A . n A 1 32 LEU 32 80 80 LEU LEU A . n A 1 33 MSE 33 81 81 MSE MSE A . n A 1 34 SER 34 82 82 SER SER A . n A 1 35 GLU 35 83 83 GLU GLU A . n A 1 36 ASN 36 84 84 ASN ASN A . n A 1 37 ARG 37 85 85 ARG ARG A . n A 1 38 ASN 38 86 86 ASN ASN A . n A 1 39 GLU 39 87 87 GLU GLU A . n A 1 40 LYS 40 88 88 LYS LYS A . n A 1 41 TYR 41 89 89 TYR TYR A . n A 1 42 ASP 42 90 90 ASP ASP A . n A 1 43 TYR 43 91 91 TYR TYR A . n A 1 44 TYR 44 92 92 TYR TYR A . n A 1 45 PHE 45 93 93 PHE PHE A . n A 1 46 ASN 46 94 94 ASN ASN A . n A 1 47 GLN 47 95 95 GLN GLN A . n A 1 48 ILE 48 96 96 ILE ILE A . n A 1 49 LYS 49 97 97 LYS LYS A . n A 1 50 ASP 50 98 98 ASP ASP A . n A 1 51 LYS 51 99 99 LYS LYS A . n A 1 52 ALA 52 100 100 ALA ALA A . n A 1 53 GLU 53 101 101 GLU GLU A . n A 1 54 TRP 54 102 102 TRP TRP A . n A 1 55 ALA 55 103 103 ALA ALA A . n A 1 56 TYR 56 104 104 TYR TYR A . n A 1 57 PHE 57 105 105 PHE PHE A . n A 1 58 PHE 58 106 106 PHE PHE A . n A 1 59 HIS 59 107 107 HIS HIS A . n A 1 60 LEU 60 108 108 LEU LEU A . n A 1 61 PRO 61 109 109 PRO PRO A . n A 1 62 TYR 62 110 110 TYR TYR A . n A 1 63 GLY 63 111 111 GLY GLY A . n A 1 64 LEU 64 112 112 LEU LEU A . n A 1 65 ASN 65 113 113 ASN ASN A . n A 1 66 LYS 66 114 114 LYS LYS A . n A 1 67 SER 67 115 115 SER SER A . n A 1 68 PHE 68 116 116 PHE PHE A . n A 1 69 ASN 69 117 117 ASN ASN A . n A 1 70 PHE 70 118 118 PHE PHE A . n A 1 71 ILE 71 119 119 ILE ILE A . n A 1 72 PRO 72 120 120 PRO PRO A . n A 1 73 THR 73 121 121 THR THR A . n A 1 74 MSE 74 122 122 MSE MSE A . n A 1 75 ALA 75 123 123 ALA ALA A . n A 1 76 GLU 76 124 124 GLU GLU A . n A 1 77 LEU 77 125 125 LEU LEU A . n A 1 78 LYS 78 126 126 LYS LYS A . n A 1 79 VAL 79 127 127 VAL VAL A . n A 1 80 LYS 80 128 128 LYS LYS A . n A 1 81 ALA 81 129 129 ALA ALA A . n A 1 82 MSE 82 130 130 MSE MSE A . n A 1 83 LEU 83 131 131 LEU LEU A . n A 1 84 LEU 84 132 132 LEU LEU A . n A 1 85 PRO 85 133 133 PRO PRO A . n A 1 86 LYS 86 134 134 LYS LYS A . n A 1 87 VAL 87 135 135 VAL VAL A . n A 1 88 LYS 88 136 136 LYS LYS A . n A 1 89 ARG 89 137 137 ARG ARG A . n A 1 90 ILE 90 138 138 ILE ILE A . n A 1 91 TYR 91 139 139 TYR TYR A . n A 1 92 LEU 92 140 140 LEU LEU A . n A 1 93 ALA 93 141 141 ALA ALA A . n A 1 94 SER 94 142 142 SER SER A . n A 1 95 LEU 95 143 143 LEU LEU A . n A 1 96 GLU 96 144 144 GLU GLU A . n A 1 97 LYS 97 145 145 LYS LYS A . n A 1 98 VAL 98 146 146 VAL VAL A . n A 1 99 SER 99 147 147 SER SER A . n A 1 100 ILE 100 148 148 ILE ILE A . n A 1 101 ALA 101 149 149 ALA ALA A . n A 1 102 ALA 102 150 150 ALA ALA A . n A 1 103 PHE 103 151 151 PHE PHE A . n A 1 104 LEU 104 152 152 LEU LEU A . n A 1 105 SER 105 153 153 SER SER A . n A 1 106 THR 106 154 154 THR THR A . n A 1 107 TYR 107 155 155 TYR TYR A . n A 1 108 PRO 108 156 156 PRO PRO A . n A 1 109 ASP 109 157 157 ASP ASP A . n A 1 110 ALA 110 158 158 ALA ALA A . n A 1 111 GLU 111 159 159 GLU GLU A . n A 1 112 ILE 112 160 160 ILE ILE A . n A 1 113 LYS 113 161 161 LYS LYS A . n A 1 114 THR 114 162 162 THR THR A . n A 1 115 PHE 115 163 163 PHE PHE A . n A 1 116 ASP 116 164 164 ASP ASP A . n A 1 117 ASP 117 165 165 ASP ASP A . n A 1 118 GLY 118 166 166 GLY GLY A . n A 1 119 THR 119 167 167 THR THR A . n A 1 120 ILE 120 168 168 ILE ILE A . n A 1 121 ASN 121 169 169 ASN ASN A . n A 1 122 LEU 122 170 170 LEU LEU A . n A 1 123 ILE 123 171 171 ILE ILE A . n A 1 124 GLN 124 172 172 GLN GLN A . n A 1 125 SER 125 173 173 SER SER A . n A 1 126 SER 126 174 174 SER SER A . n A 1 127 SER 127 175 175 SER SER A . n A 1 128 TYR 128 176 176 TYR TYR A . n A 1 129 LEU 129 177 177 LEU LEU A . n A 1 130 GLY 130 178 178 GLY GLY A . n A 1 131 ASP 131 179 179 ASP ASP A . n A 1 132 GLU 132 180 180 GLU GLU A . n A 1 133 PHE 133 181 181 PHE PHE A . n A 1 134 SER 134 182 182 SER SER A . n A 1 135 VAL 135 183 183 VAL VAL A . n A 1 136 ASN 136 184 184 ASN ASN A . n A 1 137 GLY 137 185 185 GLY GLY A . n A 1 138 THR 138 186 186 THR THR A . n A 1 139 ILE 139 187 187 ILE ILE A . n A 1 140 LYS 140 188 188 LYS LYS A . n A 1 141 ARG 141 189 189 ARG ARG A . n A 1 142 ASN 142 190 190 ASN ASN A . n A 1 143 PHE 143 191 191 PHE PHE A . n A 1 144 ALA 144 192 192 ALA ALA A . n A 1 145 ARG 145 193 193 ARG ARG A . n A 1 146 MSE 146 194 194 MSE MSE A . n A 1 147 MSE 147 195 195 MSE MSE A . n A 1 148 ILE 148 196 196 ILE ILE A . n A 1 149 GLY 149 197 197 GLY GLY A . n A 1 150 ASP 150 198 198 ASP ASP A . n A 1 151 TRP 151 199 199 TRP TRP A . n A 1 152 SER 152 200 200 SER SER A . n A 1 153 ILE 153 201 201 ILE ILE A . n A 1 154 ALA 154 202 202 ALA ALA A . n A 1 155 LYS 155 203 203 LYS LYS A . n A 1 156 THR 156 204 204 THR THR A . n A 1 157 ARG 157 205 205 ARG ARG A . n A 1 158 ASN 158 206 206 ASN ASN A . n A 1 159 ALA 159 207 207 ALA ALA A . n A 1 160 SER 160 208 208 SER SER A . n A 1 161 ASP 161 209 209 ASP ASP A . n A 1 162 GLU 162 210 210 GLU GLU A . n A 1 163 HIS 163 211 211 HIS HIS A . n A 1 164 TYR 164 212 212 TYR TYR A . n A 1 165 THR 165 213 213 THR THR A . n A 1 166 ILE 166 214 214 ILE ILE A . n A 1 167 PHE 167 215 215 PHE PHE A . n A 1 168 LYS 168 216 216 LYS LYS A . n A 1 169 GLY 169 217 217 GLY GLY A . n A 1 170 LEU 170 218 218 LEU LEU A . n A 1 171 LYS 171 219 219 LYS LYS A . n A 1 172 ASN 172 220 220 ASN ASN A . n A 1 173 ILE 173 221 221 ILE ILE A . n A 1 174 MSE 174 222 222 MSE MSE A . n A 1 175 ASP 175 223 223 ASP ASP A . n A 1 176 ASP 176 224 224 ASP ASP A . n A 1 177 GLY 177 225 225 GLY GLY A . n A 1 178 ARG 178 226 226 ARG ARG A . n A 1 179 ARG 179 227 227 ARG ARG A . n A 1 180 LYS 180 228 228 LYS LYS A . n A 1 181 MSE 181 229 229 MSE MSE A . n A 1 182 THR 182 230 230 THR THR A . n A 1 183 TYR 183 231 231 TYR TYR A . n A 1 184 LEU 184 232 232 LEU LEU A . n A 1 185 PRO 185 233 233 PRO PRO A . n A 1 186 LEU 186 234 234 LEU LEU A . n A 1 187 PHE 187 235 235 PHE PHE A . n A 1 188 ASP 188 236 236 ASP ASP A . n A 1 189 ALA 189 237 237 ALA ALA A . n A 1 190 SER 190 238 238 SER SER A . n A 1 191 GLU 191 239 239 GLU GLU A . n A 1 192 LEU 192 240 240 LEU LEU A . n A 1 193 LYS 193 241 241 LYS LYS A . n A 1 194 ALA 194 242 242 ALA ALA A . n A 1 195 GLY 195 243 243 GLY GLY A . n A 1 196 ASP 196 244 244 ASP ASP A . n A 1 197 GLU 197 245 245 GLU GLU A . n A 1 198 THR 198 246 246 THR THR A . n A 1 199 GLY 199 247 247 GLY GLY A . n A 1 200 GLY 200 248 248 GLY GLY A . n A 1 201 THR 201 249 249 THR THR A . n A 1 202 VAL 202 250 250 VAL VAL A . n A 1 203 ARG 203 251 251 ARG ARG A . n A 1 204 ILE 204 252 252 ILE ILE A . n A 1 205 LEU 205 253 253 LEU LEU A . n A 1 206 LEU 206 254 254 LEU LEU A . n A 1 207 GLY 207 255 255 GLY GLY A . n A 1 208 SER 208 256 256 SER SER A . n A 1 209 PRO 209 257 257 PRO PRO A . n A 1 210 ASP 210 258 258 ASP ASP A . n A 1 211 LYS 211 259 259 LYS LYS A . n A 1 212 GLU 212 260 260 GLU GLU A . n A 1 213 MSE 213 261 261 MSE MSE A . n A 1 214 LYS 214 262 262 LYS LYS A . n A 1 215 GLU 215 263 263 GLU GLU A . n A 1 216 ILE 216 264 264 ILE ILE A . n A 1 217 SER 217 265 265 SER SER A . n A 1 218 GLU 218 266 266 GLU GLU A . n A 1 219 LYS 219 267 267 LYS LYS A . n A 1 220 ALA 220 268 268 ALA ALA A . n A 1 221 ALA 221 269 269 ALA ALA A . n A 1 222 LYS 222 270 270 LYS LYS A . n A 1 223 ASN 223 271 271 ASN ASN A . n A 1 224 PHE 224 272 272 PHE PHE A . n A 1 225 ASN 225 273 273 ASN ASN A . n A 1 226 ILE 226 274 274 ILE ILE A . n A 1 227 GLN 227 275 275 GLN GLN A . n A 1 228 TYR 228 276 276 TYR TYR A . n A 1 229 VAL 229 277 277 VAL VAL A . n A 1 230 ALA 230 278 278 ALA ALA A . n A 1 231 PRO 231 279 279 PRO PRO A . n A 1 232 HIS 232 280 280 HIS HIS A . n A 1 233 PRO 233 281 281 PRO PRO A . n A 1 234 ARG 234 282 282 ARG ARG A . n A 1 235 GLN 235 283 283 GLN GLN A . n A 1 236 THR 236 284 284 THR THR A . n A 1 237 TYR 237 285 285 TYR TYR A . n A 1 238 GLY 238 286 286 GLY GLY A . n A 1 239 LEU 239 287 287 LEU LEU A . n A 1 240 SER 240 288 288 SER SER A . n A 1 241 GLY 241 289 289 GLY GLY A . n A 1 242 VAL 242 290 290 VAL VAL A . n A 1 243 THR 243 291 291 THR THR A . n A 1 244 THR 244 292 292 THR THR A . n A 1 245 LEU 245 293 293 LEU LEU A . n A 1 246 ASN 246 294 294 ASN ASN A . n A 1 247 SER 247 295 295 SER SER A . n A 1 248 PRO 248 296 296 PRO PRO A . n A 1 249 TYR 249 297 297 TYR TYR A . n A 1 250 VAL 250 298 298 VAL VAL A . n A 1 251 ILE 251 299 299 ILE ILE A . n A 1 252 GLU 252 300 300 GLU GLU A . n A 1 253 ASP 253 301 301 ASP ASP A . n A 1 254 TYR 254 302 302 TYR TYR A . n A 1 255 ILE 255 303 303 ILE ILE A . n A 1 256 LEU 256 304 304 LEU LEU A . n A 1 257 ARG 257 305 305 ARG ARG A . n A 1 258 GLU 258 306 306 GLU GLU A . n A 1 259 ILE 259 307 307 ILE ILE A . n A 1 260 LYS 260 308 308 LYS LYS A . n A 1 261 LYS 261 309 309 LYS LYS A . n A 1 262 ASN 262 310 310 ASN ASN A . n A 1 263 PRO 263 311 311 PRO PRO A . n A 1 264 HIS 264 312 312 HIS HIS A . n A 1 265 THR 265 313 313 THR THR A . n A 1 266 ARG 266 314 314 ARG ARG A . n A 1 267 TYR 267 315 315 TYR TYR A . n A 1 268 GLU 268 316 316 GLU GLU A . n A 1 269 ILE 269 317 317 ILE ILE A . n A 1 270 TYR 270 318 318 TYR TYR A . n A 1 271 THR 271 319 319 THR THR A . n A 1 272 PHE 272 320 320 PHE PHE A . n A 1 273 PHE 273 321 321 PHE PHE A . n A 1 274 SER 274 322 322 SER SER A . n A 1 275 GLY 275 323 323 GLY GLY A . n A 1 276 ALA 276 324 324 ALA ALA A . n A 1 277 ALA 277 325 325 ALA ALA A . n A 1 278 LEU 278 326 326 LEU LEU A . n A 1 279 THR 279 327 327 THR THR A . n A 1 280 MSE 280 328 328 MSE MSE A . n A 1 281 LYS 281 329 329 LYS LYS A . n A 1 282 ASP 282 330 330 ASP ASP A . n A 1 283 PHE 283 331 331 PHE PHE A . n A 1 284 PRO 284 332 332 PRO PRO A . n A 1 285 ASN 285 333 333 ASN ASN A . n A 1 286 VAL 286 334 334 VAL VAL A . n A 1 287 HIS 287 335 335 HIS HIS A . n A 1 288 VAL 288 336 336 VAL VAL A . n A 1 289 TYR 289 337 337 TYR TYR A . n A 1 290 ALA 290 338 338 ALA ALA A . n A 1 291 LEU 291 339 339 LEU LEU A . n A 1 292 LYS 292 340 340 LYS LYS A . n A 1 293 PRO 293 341 341 PRO PRO A . n A 1 294 ALA 294 342 342 ALA ALA A . n A 1 295 SER 295 343 343 SER SER A . n A 1 296 LEU 296 344 344 LEU LEU A . n A 1 297 PRO 297 345 345 PRO PRO A . n A 1 298 GLU 298 346 346 GLU GLU A . n A 1 299 ASP 299 347 347 ASP ASP A . n A 1 300 TYR 300 348 348 TYR TYR A . n A 1 301 TRP 301 349 349 TRP TRP A . n A 1 302 LEU 302 350 350 LEU LEU A . n A 1 303 LYS 303 351 351 LYS LYS A . n A 1 304 PRO 304 352 352 PRO PRO A . n A 1 305 VAL 305 353 353 VAL VAL A . n A 1 306 TYR 306 354 354 TYR TYR A . n A 1 307 ALA 307 355 355 ALA ALA A . n A 1 308 LEU 308 356 356 LEU LEU A . n A 1 309 PHE 309 357 357 PHE PHE A . n A 1 310 THR 310 358 358 THR THR A . n A 1 311 GLN 311 359 359 GLN GLN A . n A 1 312 SER 312 360 360 SER SER A . n A 1 313 GLY 313 361 361 GLY GLY A . n A 1 314 ILE 314 362 362 ILE ILE A . n A 1 315 PRO 315 363 363 PRO PRO A . n A 1 316 ILE 316 364 364 ILE ILE A . n A 1 317 LEU 317 365 365 LEU LEU A . n A 1 318 THR 318 366 366 THR THR A . n A 1 319 PHE 319 367 367 PHE PHE A . n A 1 320 ASP 320 368 368 ASP ASP A . n A 1 321 ASP 321 369 369 ASP ASP A . n A 1 322 LYS 322 370 370 LYS LYS A . n A 1 323 LEU 323 371 371 LEU LEU A . n A 1 324 VAL 324 372 372 VAL VAL A . n A 1 325 PRO 325 373 373 PRO PRO A . n A 1 326 ARG 326 374 374 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C 1 1375 1375 C C A . C 3 PO4 1 1376 1376 PO4 PO4 A . D 4 1PE 1 1377 1377 1PE 1PE A . E 5 SO4 1 1378 1378 SO4 SO4 A . F 5 SO4 1 1379 1379 SO4 SO4 A . G 5 SO4 1 1380 1380 SO4 SO4 A . H 6 EDO 1 1381 1381 EDO EDO A . I 6 EDO 1 1382 1382 EDO EDO A . J 7 HOH 1 2001 2001 HOH HOH A . J 7 HOH 2 2002 2002 HOH HOH A . J 7 HOH 3 2003 2003 HOH HOH A . J 7 HOH 4 2004 2004 HOH HOH A . J 7 HOH 5 2005 2005 HOH HOH A . J 7 HOH 6 2006 2006 HOH HOH A . J 7 HOH 7 2007 2007 HOH HOH A . J 7 HOH 8 2008 2008 HOH HOH A . J 7 HOH 9 2009 2009 HOH HOH A . J 7 HOH 10 2010 2010 HOH HOH A . J 7 HOH 11 2011 2011 HOH HOH A . J 7 HOH 12 2012 2012 HOH HOH A . J 7 HOH 13 2013 2013 HOH HOH A . J 7 HOH 14 2014 2014 HOH HOH A . J 7 HOH 15 2015 2015 HOH HOH A . J 7 HOH 16 2016 2016 HOH HOH A . J 7 HOH 17 2017 2017 HOH HOH A . J 7 HOH 18 2018 2018 HOH HOH A . J 7 HOH 19 2019 2019 HOH HOH A . J 7 HOH 20 2020 2020 HOH HOH A . J 7 HOH 21 2021 2021 HOH HOH A . J 7 HOH 22 2022 2022 HOH HOH A . J 7 HOH 23 2023 2023 HOH HOH A . J 7 HOH 24 2024 2024 HOH HOH A . J 7 HOH 25 2025 2025 HOH HOH A . J 7 HOH 26 2026 2026 HOH HOH A . J 7 HOH 27 2027 2027 HOH HOH A . J 7 HOH 28 2028 2028 HOH HOH A . J 7 HOH 29 2029 2029 HOH HOH A . J 7 HOH 30 2030 2030 HOH HOH A . J 7 HOH 31 2031 2031 HOH HOH A . J 7 HOH 32 2032 2032 HOH HOH A . J 7 HOH 33 2033 2033 HOH HOH A . J 7 HOH 34 2034 2034 HOH HOH A . J 7 HOH 35 2035 2035 HOH HOH A . J 7 HOH 36 2036 2036 HOH HOH A . J 7 HOH 37 2037 2037 HOH HOH A . J 7 HOH 38 2038 2038 HOH HOH A . J 7 HOH 39 2039 2039 HOH HOH A . J 7 HOH 40 2040 2040 HOH HOH A . J 7 HOH 41 2041 2041 HOH HOH A . J 7 HOH 42 2042 2042 HOH HOH A . J 7 HOH 43 2043 2043 HOH HOH A . J 7 HOH 44 2044 2044 HOH HOH A . J 7 HOH 45 2045 2045 HOH HOH A . J 7 HOH 46 2046 2046 HOH HOH A . J 7 HOH 47 2047 2047 HOH HOH A . J 7 HOH 48 2048 2048 HOH HOH A . J 7 HOH 49 2049 2049 HOH HOH A . J 7 HOH 50 2050 2050 HOH HOH A . J 7 HOH 51 2051 2051 HOH HOH A . J 7 HOH 52 2052 2052 HOH HOH A . J 7 HOH 53 2053 2053 HOH HOH A . J 7 HOH 54 2054 2054 HOH HOH A . J 7 HOH 55 2055 2055 HOH HOH A . J 7 HOH 56 2056 2056 HOH HOH A . J 7 HOH 57 2057 2057 HOH HOH A . J 7 HOH 58 2058 2058 HOH HOH A . J 7 HOH 59 2059 2059 HOH HOH A . J 7 HOH 60 2060 2060 HOH HOH A . J 7 HOH 61 2061 2061 HOH HOH A . J 7 HOH 62 2062 2062 HOH HOH A . J 7 HOH 63 2063 2063 HOH HOH A . J 7 HOH 64 2064 2064 HOH HOH A . J 7 HOH 65 2065 2065 HOH HOH A . J 7 HOH 66 2066 2066 HOH HOH A . J 7 HOH 67 2067 2067 HOH HOH A . J 7 HOH 68 2068 2068 HOH HOH A . J 7 HOH 69 2069 2069 HOH HOH A . J 7 HOH 70 2070 2070 HOH HOH A . J 7 HOH 71 2071 2071 HOH HOH A . J 7 HOH 72 2072 2072 HOH HOH A . J 7 HOH 73 2073 2073 HOH HOH A . J 7 HOH 74 2074 2074 HOH HOH A . J 7 HOH 75 2075 2075 HOH HOH A . J 7 HOH 76 2076 2076 HOH HOH A . J 7 HOH 77 2077 2077 HOH HOH A . J 7 HOH 78 2078 2078 HOH HOH A . J 7 HOH 79 2079 2079 HOH HOH A . J 7 HOH 80 2080 2080 HOH HOH A . J 7 HOH 81 2081 2081 HOH HOH A . J 7 HOH 82 2082 2082 HOH HOH A . J 7 HOH 83 2083 2083 HOH HOH A . J 7 HOH 84 2084 2084 HOH HOH A . J 7 HOH 85 2085 2085 HOH HOH A . J 7 HOH 86 2086 2086 HOH HOH A . J 7 HOH 87 2087 2087 HOH HOH A . J 7 HOH 88 2088 2088 HOH HOH A . J 7 HOH 89 2089 2089 HOH HOH A . J 7 HOH 90 2090 2090 HOH HOH A . J 7 HOH 91 2091 2091 HOH HOH A . J 7 HOH 92 2092 2092 HOH HOH A . J 7 HOH 93 2093 2093 HOH HOH A . J 7 HOH 94 2094 2094 HOH HOH A . J 7 HOH 95 2095 2095 HOH HOH A . J 7 HOH 96 2096 2096 HOH HOH A . J 7 HOH 97 2097 2097 HOH HOH A . J 7 HOH 98 2098 2098 HOH HOH A . J 7 HOH 99 2099 2099 HOH HOH A . J 7 HOH 100 2100 2100 HOH HOH A . J 7 HOH 101 2101 2101 HOH HOH A . J 7 HOH 102 2102 2102 HOH HOH A . J 7 HOH 103 2103 2103 HOH HOH A . J 7 HOH 104 2104 2104 HOH HOH A . J 7 HOH 105 2105 2105 HOH HOH A . J 7 HOH 106 2106 2106 HOH HOH A . J 7 HOH 107 2107 2107 HOH HOH A . J 7 HOH 108 2108 2108 HOH HOH A . J 7 HOH 109 2109 2109 HOH HOH A . J 7 HOH 110 2110 2110 HOH HOH A . J 7 HOH 111 2111 2111 HOH HOH A . J 7 HOH 112 2112 2112 HOH HOH A . J 7 HOH 113 2113 2113 HOH HOH A . J 7 HOH 114 2114 2114 HOH HOH A . J 7 HOH 115 2115 2115 HOH HOH A . J 7 HOH 116 2116 2116 HOH HOH A . J 7 HOH 117 2117 2117 HOH HOH A . J 7 HOH 118 2118 2118 HOH HOH A . J 7 HOH 119 2119 2119 HOH HOH A . J 7 HOH 120 2120 2120 HOH HOH A . J 7 HOH 121 2121 2121 HOH HOH A . J 7 HOH 122 2122 2122 HOH HOH A . J 7 HOH 123 2123 2123 HOH HOH A . J 7 HOH 124 2124 2124 HOH HOH A . J 7 HOH 125 2125 2125 HOH HOH A . J 7 HOH 126 2126 2126 HOH HOH A . J 7 HOH 127 2127 2127 HOH HOH A . J 7 HOH 128 2128 2128 HOH HOH A . J 7 HOH 129 2129 2129 HOH HOH A . J 7 HOH 130 2130 2130 HOH HOH A . J 7 HOH 131 2131 2131 HOH HOH A . J 7 HOH 132 2132 2132 HOH HOH A . J 7 HOH 133 2133 2133 HOH HOH A . J 7 HOH 134 2134 2134 HOH HOH A . J 7 HOH 135 2135 2135 HOH HOH A . J 7 HOH 136 2136 2136 HOH HOH A . J 7 HOH 137 2137 2137 HOH HOH A . J 7 HOH 138 2138 2138 HOH HOH A . J 7 HOH 139 2139 2139 HOH HOH A . J 7 HOH 140 2140 2140 HOH HOH A . J 7 HOH 141 2141 2141 HOH HOH A . J 7 HOH 142 2142 2142 HOH HOH A . J 7 HOH 143 2143 2143 HOH HOH A . J 7 HOH 144 2144 2144 HOH HOH A . J 7 HOH 145 2145 2145 HOH HOH A . J 7 HOH 146 2146 2146 HOH HOH A . J 7 HOH 147 2147 2147 HOH HOH A . J 7 HOH 148 2148 2148 HOH HOH A . J 7 HOH 149 2149 2149 HOH HOH A . J 7 HOH 150 2150 2150 HOH HOH A . J 7 HOH 151 2151 2151 HOH HOH A . J 7 HOH 152 2152 2152 HOH HOH A . J 7 HOH 153 2153 2153 HOH HOH A . J 7 HOH 154 2154 2154 HOH HOH A . J 7 HOH 155 2155 2155 HOH HOH A . J 7 HOH 156 2156 2156 HOH HOH A . J 7 HOH 157 2157 2157 HOH HOH A . J 7 HOH 158 2158 2158 HOH HOH A . J 7 HOH 159 2159 2159 HOH HOH A . J 7 HOH 160 2160 2160 HOH HOH A . J 7 HOH 161 2161 2161 HOH HOH A . J 7 HOH 162 2162 2162 HOH HOH A . J 7 HOH 163 2163 2163 HOH HOH A . J 7 HOH 164 2164 2164 HOH HOH A . J 7 HOH 165 2165 2165 HOH HOH A . J 7 HOH 166 2166 2166 HOH HOH A . J 7 HOH 167 2167 2167 HOH HOH A . J 7 HOH 168 2168 2168 HOH HOH A . J 7 HOH 169 2169 2169 HOH HOH A . J 7 HOH 170 2170 2170 HOH HOH A . J 7 HOH 171 2171 2171 HOH HOH A . J 7 HOH 172 2172 2172 HOH HOH A . J 7 HOH 173 2173 2173 HOH HOH A . J 7 HOH 174 2174 2174 HOH HOH A . J 7 HOH 175 2175 2175 HOH HOH A . J 7 HOH 176 2176 2176 HOH HOH A . J 7 HOH 177 2177 2177 HOH HOH A . J 7 HOH 178 2178 2178 HOH HOH A . J 7 HOH 179 2179 2179 HOH HOH A . J 7 HOH 180 2180 2180 HOH HOH A . J 7 HOH 181 2181 2181 HOH HOH A . J 7 HOH 182 2182 2182 HOH HOH A . J 7 HOH 183 2183 2183 HOH HOH A . J 7 HOH 184 2184 2184 HOH HOH A . J 7 HOH 185 2185 2185 HOH HOH A . J 7 HOH 186 2186 2186 HOH HOH A . J 7 HOH 187 2187 2187 HOH HOH A . J 7 HOH 188 2188 2188 HOH HOH A . J 7 HOH 189 2189 2189 HOH HOH A . J 7 HOH 190 2190 2190 HOH HOH A . J 7 HOH 191 2191 2191 HOH HOH A . J 7 HOH 192 2192 2192 HOH HOH A . J 7 HOH 193 2193 2193 HOH HOH A . J 7 HOH 194 2194 2194 HOH HOH A . J 7 HOH 195 2195 2195 HOH HOH A . J 7 HOH 196 2196 2196 HOH HOH A . J 7 HOH 197 2197 2197 HOH HOH A . J 7 HOH 198 2198 2198 HOH HOH A . J 7 HOH 199 2199 2199 HOH HOH A . J 7 HOH 200 2200 2200 HOH HOH A . J 7 HOH 201 2201 2201 HOH HOH A . J 7 HOH 202 2202 2202 HOH HOH A . J 7 HOH 203 2203 2203 HOH HOH A . J 7 HOH 204 2204 2204 HOH HOH A . J 7 HOH 205 2205 2205 HOH HOH A . J 7 HOH 206 2206 2206 HOH HOH A . J 7 HOH 207 2207 2207 HOH HOH A . J 7 HOH 208 2208 2208 HOH HOH A . J 7 HOH 209 2209 2209 HOH HOH A . J 7 HOH 210 2210 2210 HOH HOH A . J 7 HOH 211 2211 2211 HOH HOH A . J 7 HOH 212 2212 2212 HOH HOH A . J 7 HOH 213 2213 2213 HOH HOH A . J 7 HOH 214 2214 2214 HOH HOH A . J 7 HOH 215 2215 2215 HOH HOH A . J 7 HOH 216 2216 2216 HOH HOH A . J 7 HOH 217 2217 2217 HOH HOH A . J 7 HOH 218 2218 2218 HOH HOH A . J 7 HOH 219 2219 2219 HOH HOH A . J 7 HOH 220 2220 2220 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 61 ? MET SELENOMETHIONINE 2 A MSE 20 A MSE 68 ? MET SELENOMETHIONINE 3 A MSE 33 A MSE 81 ? MET SELENOMETHIONINE 4 A MSE 74 A MSE 122 ? MET SELENOMETHIONINE 5 A MSE 82 A MSE 130 ? MET SELENOMETHIONINE 6 A MSE 146 A MSE 194 ? MET SELENOMETHIONINE 7 A MSE 147 A MSE 195 ? MET SELENOMETHIONINE 8 A MSE 174 A MSE 222 ? MET SELENOMETHIONINE 9 A MSE 181 A MSE 229 ? MET SELENOMETHIONINE 10 A MSE 213 A MSE 261 ? MET SELENOMETHIONINE 11 A MSE 280 A MSE 328 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 14290 ? 1 MORE -145.3 ? 1 'SSA (A^2)' 28450 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 85.7470000000 0.0000000000 -1.0000000000 0.0000000000 124.1370000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-31 2 'Structure model' 1 1 2011-11-02 3 'Structure model' 1 2 2017-07-05 4 'Structure model' 1 3 2019-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' exptl_crystal_grow 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_exptl_crystal_grow.method' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.5.0110 ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? PHENIX phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2YK5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;E40D, R102W, G168I, T242A, AND K273N ARE NATURAL VARIANTS IN THE STRAIN N. MENINGITIDIS SEROTYPE B 126E / NRCC4010. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 2194 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2195 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.04 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NH1 A ARG 66 ? ? 1_555 O A PRO 233 ? ? 2_665 1.97 2 1 O A HOH 2038 ? ? 1_555 O A HOH 2071 ? ? 2_665 2.07 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 226 ? ? CZ A ARG 226 ? ? NH1 A ARG 226 ? ? 123.95 120.30 3.65 0.50 N 2 1 NE A ARG 226 ? ? CZ A ARG 226 ? ? NH2 A ARG 226 ? ? 116.37 120.30 -3.93 0.50 N 3 1 CG1 A ILE 303 ? ? CB A ILE 303 ? ? CG2 A ILE 303 ? ? 95.02 111.40 -16.38 2.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 86 ? ? -170.60 -171.27 2 1 ASN A 206 ? ? 38.51 60.55 3 1 ALA A 207 ? ? -32.18 125.85 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "CYTIDINE-5'-MONOPHOSPHATE" C 3 'PHOSPHATE ION' PO4 4 'PENTAETHYLENE GLYCOL' 1PE 5 'SULFATE ION' SO4 6 1,2-ETHANEDIOL EDO 7 water HOH #