data_2YMY # _entry.id 2YMY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YMY PDBE EBI-54195 WWPDB D_1290054195 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2FNF _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'C1 DOMAIN OF NORE1' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YMY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-10-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Makbul, C.' 1 'Schwarz, D.' 2 'Aruxandei, D.C.' 3 'Wolf, E.' 4 'Hofmann, E.' 5 'Herrmann, C.' 6 # _citation.id primary _citation.title 'Structural and Thermodynamic Characterization of Nore1-Sarah: A Small, Helical Module Important in Signal Transduction Networks.' _citation.journal_abbrev Biochemistry _citation.journal_volume 52 _citation.page_first 1045 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23331050 _citation.pdbx_database_id_DOI 10.1021/BI3014642 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Makbul, C.' 1 primary 'Constantinescu Aruxandei, D.' 2 primary 'Hofmann, E.' 3 primary 'Schwarz, D.' 4 primary 'Wolf, E.' 5 primary 'Herrmann, C.' 6 # _cell.entry_id 2YMY _cell.length_a 70.820 _cell.length_b 84.410 _cell.length_c 39.240 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YMY _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RAS ASSOCIATION DOMAIN-CONTAINING PROTEIN 5' 5465.176 2 ? ? 'SARAH DOMAIN, RESIDUES 370-413' ? 2 non-polymer syn 'CADMIUM ION' 112.411 3 ? ? ? ? 3 water nat water 18.015 88 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NEW RAS EFFECTOR 1, REGULATOR FOR CELL ADHESION AND POLARIZATION ENRICHED IN LYMPHOID TISSUES, RAPL, NORE1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSPELQNFLTILEKEEQDKIHQLQKKYNKFRQKLEEALRESQGKPG _entity_poly.pdbx_seq_one_letter_code_can GSPELQNFLTILEKEEQDKIHQLQKKYNKFRQKLEEALRESQGKPG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLU n 1 5 LEU n 1 6 GLN n 1 7 ASN n 1 8 PHE n 1 9 LEU n 1 10 THR n 1 11 ILE n 1 12 LEU n 1 13 GLU n 1 14 LYS n 1 15 GLU n 1 16 GLU n 1 17 GLN n 1 18 ASP n 1 19 LYS n 1 20 ILE n 1 21 HIS n 1 22 GLN n 1 23 LEU n 1 24 GLN n 1 25 LYS n 1 26 LYS n 1 27 TYR n 1 28 ASN n 1 29 LYS n 1 30 PHE n 1 31 ARG n 1 32 GLN n 1 33 LYS n 1 34 LEU n 1 35 GLU n 1 36 GLU n 1 37 ALA n 1 38 LEU n 1 39 ARG n 1 40 GLU n 1 41 SER n 1 42 GLN n 1 43 GLY n 1 44 LYS n 1 45 PRO n 1 46 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PGEX-4T _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASF5_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q5EBH1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YMY A 3 ? 46 ? Q5EBH1 370 ? 413 ? 370 413 2 1 2YMY B 3 ? 46 ? Q5EBH1 370 ? 413 ? 370 413 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YMY GLY A 1 ? UNP Q5EBH1 ? ? 'expression tag' 368 1 1 2YMY SER A 2 ? UNP Q5EBH1 ? ? 'expression tag' 369 2 2 2YMY GLY B 1 ? UNP Q5EBH1 ? ? 'expression tag' 368 3 2 2YMY SER B 2 ? UNP Q5EBH1 ? ? 'expression tag' 369 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 2YMY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 54.15 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25-26 % (V/V) PEG 400, 100 MM SODIUM ACETATE (PH 4.6), 45-50 MM CADMIUM CHLORIDE.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2002-03-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRROR _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9393 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.9393 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YMY _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.21 _reflns.d_resolution_high 1.69 _reflns.number_obs 13449 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.30 _reflns.B_iso_Wilson_estimate 21.33 _reflns.pdbx_redundancy 6.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.69 _reflns_shell.d_res_low 1.73 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs 0.76 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 4.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YMY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13436 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.205 _refine.ls_d_res_high 1.690 _refine.ls_percent_reflns_obs 99.14 _refine.ls_R_factor_obs 0.1963 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1943 _refine.ls_R_factor_R_free 0.2353 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 663 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.8 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0 _refine.solvent_model_param_bsol 0 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.20 _refine.pdbx_overall_phase_error 26.72 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 698 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 789 _refine_hist.d_res_high 1.690 _refine_hist.d_res_low 42.205 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.013 ? ? 740 'X-RAY DIFFRACTION' ? f_angle_d 1.406 ? ? 986 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.114 ? ? 312 'X-RAY DIFFRACTION' ? f_chiral_restr 0.072 ? ? 101 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 132 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.6900 1.8205 2451 0.2426 97.00 0.2837 . . 125 . . 'X-RAY DIFFRACTION' . 1.8205 2.0037 2531 0.2076 100.00 0.2364 . . 120 . . 'X-RAY DIFFRACTION' . 2.0037 2.2937 2561 0.1727 100.00 0.2410 . . 138 . . 'X-RAY DIFFRACTION' . 2.2937 2.8897 2562 0.1891 100.00 0.2035 . . 140 . . 'X-RAY DIFFRACTION' . 2.8897 42.2181 2668 0.1947 99.00 0.2425 . . 140 . . # _struct.entry_id 2YMY _struct.title 'Structure of the murine Nore1-Sarah domain' _struct.pdbx_descriptor 'RAS ASSOCIATION DOMAIN-CONTAINING PROTEIN 5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YMY _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'APOPTOSIS, TUMOR SUPPRESSOR, COILED-COIL, RAS ASSOCIATION DOMAIN FAMILY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? ARG A 39 ? SER A 369 ARG A 406 1 ? 38 HELX_P HELX_P2 2 SER B 2 ? GLU B 40 ? SER B 369 GLU B 407 1 ? 39 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C CD . CD ? ? ? 1_555 B GLU 36 OE2 ? ? A CD 1409 B GLU 403 5_545 ? ? ? ? ? ? ? 2.136 ? metalc2 metalc ? ? C CD . CD ? ? ? 1_555 B GLU 36 OE2 ? ? A CD 1409 B GLU 403 8_555 ? ? ? ? ? ? ? 2.290 ? metalc3 metalc ? ? C CD . CD ? ? ? 1_555 A GLU 40 OE2 ? ? A CD 1409 A GLU 407 4_555 ? ? ? ? ? ? ? 2.953 ? metalc4 metalc ? ? C CD . CD ? ? ? 1_555 A GLU 40 OE1 ? ? A CD 1409 A GLU 407 1_555 ? ? ? ? ? ? ? 2.051 ? metalc5 metalc ? ? C CD . CD ? ? ? 1_555 A GLU 40 OE1 ? ? A CD 1409 A GLU 407 4_555 ? ? ? ? ? ? ? 2.568 ? metalc6 metalc ? ? C CD . CD ? ? ? 1_555 A GLU 40 OE2 ? ? A CD 1409 A GLU 407 1_555 ? ? ? ? ? ? ? 2.054 ? metalc7 metalc ? ? C CD . CD ? ? ? 1_555 B GLU 36 OE1 ? ? A CD 1409 B GLU 403 5_545 ? ? ? ? ? ? ? 2.455 ? metalc8 metalc ? ? C CD . CD ? ? ? 1_555 B GLU 36 OE1 ? ? A CD 1409 B GLU 403 8_555 ? ? ? ? ? ? ? 2.848 ? metalc9 metalc ? ? D CD . CD ? ? ? 1_555 G HOH . O ? ? B CD 1409 B HOH 2044 3_655 ? ? ? ? ? ? ? 2.487 ? metalc10 metalc ? ? D CD . CD ? ? ? 1_555 G HOH . O ? ? B CD 1409 B HOH 2024 3_655 ? ? ? ? ? ? ? 2.268 ? metalc11 metalc ? ? D CD . CD ? ? ? 1_555 B HIS 21 NE2 ? ? B CD 1409 B HIS 388 3_655 ? ? ? ? ? ? ? 2.623 ? metalc12 metalc ? ? D CD . CD ? ? ? 1_555 G HOH . O ? ? B CD 1409 B HOH 2024 1_555 ? ? ? ? ? ? ? 2.268 ? metalc13 metalc ? ? D CD . CD ? ? ? 1_555 G HOH . O ? ? B CD 1409 B HOH 2044 1_555 ? ? ? ? ? ? ? 2.487 ? metalc14 metalc ? ? D CD . CD ? ? ? 1_555 B HIS 21 NE2 ? ? B CD 1409 B HIS 388 1_555 ? ? ? ? ? ? ? 2.623 ? metalc15 metalc ? ? E CD . CD ? ? ? 1_555 B GLU 40 OE1 ? ? B CD 1410 B GLU 407 4_565 ? ? ? ? ? ? ? 2.395 ? metalc16 metalc ? ? E CD . CD ? ? ? 1_555 B GLU 40 OE2 ? ? B CD 1410 B GLU 407 1_555 ? ? ? ? ? ? ? 2.089 ? metalc17 metalc ? ? E CD . CD ? ? ? 1_555 B GLU 40 OE2 ? ? B CD 1410 B GLU 407 4_565 ? ? ? ? ? ? ? 2.914 ? metalc18 metalc ? ? E CD . CD ? ? ? 1_555 G HOH . O ? ? B CD 1410 B HOH 2042 1_555 ? ? ? ? ? ? ? 2.294 ? metalc19 metalc ? ? E CD . CD ? ? ? 1_555 B GLU 36 OE2 ? ? B CD 1410 B GLU 403 1_555 ? ? ? ? ? ? ? 2.284 ? metalc20 metalc ? ? E CD . CD ? ? ? 1_555 B GLU 36 OE2 ? ? B CD 1410 B GLU 403 4_565 ? ? ? ? ? ? ? 2.327 ? metalc21 metalc ? ? E CD . CD ? ? ? 1_555 B GLU 40 OE1 ? ? B CD 1410 B GLU 407 1_555 ? ? ? ? ? ? ? 2.569 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 1 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 368 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 2 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 369 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.69 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CD B 1409' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CD B 1410' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CD A 1409' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS B 21 ? HIS B 388 . ? 1_555 ? 2 AC1 6 HIS B 21 ? HIS B 388 . ? 3_655 ? 3 AC1 6 HOH G . ? HOH B 2024 . ? 3_655 ? 4 AC1 6 HOH G . ? HOH B 2024 . ? 1_555 ? 5 AC1 6 HOH G . ? HOH B 2044 . ? 3_655 ? 6 AC1 6 HOH G . ? HOH B 2044 . ? 1_555 ? 7 AC2 6 CD C . ? CD A 1409 . ? 5_455 ? 8 AC2 6 GLU B 36 ? GLU B 403 . ? 1_555 ? 9 AC2 6 GLU B 36 ? GLU B 403 . ? 4_565 ? 10 AC2 6 GLU B 40 ? GLU B 407 . ? 1_555 ? 11 AC2 6 GLU B 40 ? GLU B 407 . ? 4_565 ? 12 AC2 6 HOH G . ? HOH B 2042 . ? 1_555 ? 13 AC3 5 GLU A 40 ? GLU A 407 . ? 4_555 ? 14 AC3 5 GLU A 40 ? GLU A 407 . ? 1_555 ? 15 AC3 5 GLU B 36 ? GLU B 403 . ? 5_545 ? 16 AC3 5 GLU B 36 ? GLU B 403 . ? 8_555 ? 17 AC3 5 CD E . ? CD B 1410 . ? 5_545 ? # _database_PDB_matrix.entry_id 2YMY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YMY _atom_sites.fract_transf_matrix[1][1] 0.014120 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011847 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025484 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 368 ? ? ? A . n A 1 2 SER 2 369 369 SER SER A . n A 1 3 PRO 3 370 370 PRO PRO A . n A 1 4 GLU 4 371 371 GLU GLU A . n A 1 5 LEU 5 372 372 LEU LEU A . n A 1 6 GLN 6 373 373 GLN GLN A . n A 1 7 ASN 7 374 374 ASN ASN A . n A 1 8 PHE 8 375 375 PHE PHE A . n A 1 9 LEU 9 376 376 LEU LEU A . n A 1 10 THR 10 377 377 THR THR A . n A 1 11 ILE 11 378 378 ILE ILE A . n A 1 12 LEU 12 379 379 LEU LEU A . n A 1 13 GLU 13 380 380 GLU GLU A . n A 1 14 LYS 14 381 381 LYS LYS A . n A 1 15 GLU 15 382 382 GLU GLU A . n A 1 16 GLU 16 383 383 GLU GLU A . n A 1 17 GLN 17 384 384 GLN GLN A . n A 1 18 ASP 18 385 385 ASP ASP A . n A 1 19 LYS 19 386 386 LYS LYS A . n A 1 20 ILE 20 387 387 ILE ILE A . n A 1 21 HIS 21 388 388 HIS HIS A . n A 1 22 GLN 22 389 389 GLN GLN A . n A 1 23 LEU 23 390 390 LEU LEU A . n A 1 24 GLN 24 391 391 GLN GLN A . n A 1 25 LYS 25 392 392 LYS LYS A . n A 1 26 LYS 26 393 393 LYS LYS A . n A 1 27 TYR 27 394 394 TYR TYR A . n A 1 28 ASN 28 395 395 ASN ASN A . n A 1 29 LYS 29 396 396 LYS LYS A . n A 1 30 PHE 30 397 397 PHE PHE A . n A 1 31 ARG 31 398 398 ARG ARG A . n A 1 32 GLN 32 399 399 GLN GLN A . n A 1 33 LYS 33 400 400 LYS LYS A . n A 1 34 LEU 34 401 401 LEU LEU A . n A 1 35 GLU 35 402 402 GLU GLU A . n A 1 36 GLU 36 403 403 GLU GLU A . n A 1 37 ALA 37 404 404 ALA ALA A . n A 1 38 LEU 38 405 405 LEU LEU A . n A 1 39 ARG 39 406 406 ARG ARG A . n A 1 40 GLU 40 407 407 GLU GLU A . n A 1 41 SER 41 408 408 SER SER A . n A 1 42 GLN 42 409 ? ? ? A . n A 1 43 GLY 43 410 ? ? ? A . n A 1 44 LYS 44 411 ? ? ? A . n A 1 45 PRO 45 412 ? ? ? A . n A 1 46 GLY 46 413 ? ? ? A . n B 1 1 GLY 1 368 368 GLY GLY B . n B 1 2 SER 2 369 369 SER SER B . n B 1 3 PRO 3 370 370 PRO PRO B . n B 1 4 GLU 4 371 371 GLU GLU B . n B 1 5 LEU 5 372 372 LEU LEU B . n B 1 6 GLN 6 373 373 GLN GLN B . n B 1 7 ASN 7 374 374 ASN ASN B . n B 1 8 PHE 8 375 375 PHE PHE B . n B 1 9 LEU 9 376 376 LEU LEU B . n B 1 10 THR 10 377 377 THR THR B . n B 1 11 ILE 11 378 378 ILE ILE B . n B 1 12 LEU 12 379 379 LEU LEU B . n B 1 13 GLU 13 380 380 GLU GLU B . n B 1 14 LYS 14 381 381 LYS LYS B . n B 1 15 GLU 15 382 382 GLU GLU B . n B 1 16 GLU 16 383 383 GLU GLU B . n B 1 17 GLN 17 384 384 GLN GLN B . n B 1 18 ASP 18 385 385 ASP ASP B . n B 1 19 LYS 19 386 386 LYS LYS B . n B 1 20 ILE 20 387 387 ILE ILE B . n B 1 21 HIS 21 388 388 HIS HIS B . n B 1 22 GLN 22 389 389 GLN GLN B . n B 1 23 LEU 23 390 390 LEU LEU B . n B 1 24 GLN 24 391 391 GLN GLN B . n B 1 25 LYS 25 392 392 LYS LYS B . n B 1 26 LYS 26 393 393 LYS LYS B . n B 1 27 TYR 27 394 394 TYR TYR B . n B 1 28 ASN 28 395 395 ASN ASN B . n B 1 29 LYS 29 396 396 LYS LYS B . n B 1 30 PHE 30 397 397 PHE PHE B . n B 1 31 ARG 31 398 398 ARG ARG B . n B 1 32 GLN 32 399 399 GLN GLN B . n B 1 33 LYS 33 400 400 LYS LYS B . n B 1 34 LEU 34 401 401 LEU LEU B . n B 1 35 GLU 35 402 402 GLU GLU B . n B 1 36 GLU 36 403 403 GLU GLU B . n B 1 37 ALA 37 404 404 ALA ALA B . n B 1 38 LEU 38 405 405 LEU LEU B . n B 1 39 ARG 39 406 406 ARG ARG B . n B 1 40 GLU 40 407 407 GLU GLU B . n B 1 41 SER 41 408 408 SER SER B . n B 1 42 GLN 42 409 ? ? ? B . n B 1 43 GLY 43 410 ? ? ? B . n B 1 44 LYS 44 411 ? ? ? B . n B 1 45 PRO 45 412 ? ? ? B . n B 1 46 GLY 46 413 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD 1 1409 1409 CD CD A . D 2 CD 1 1409 1409 CD CD B . E 2 CD 1 1410 1410 CD CD B . F 3 HOH 1 2001 2001 HOH HOH A . F 3 HOH 2 2002 2002 HOH HOH A . F 3 HOH 3 2003 2003 HOH HOH A . F 3 HOH 4 2004 2004 HOH HOH A . F 3 HOH 5 2005 2005 HOH HOH A . F 3 HOH 6 2006 2006 HOH HOH A . F 3 HOH 7 2007 2007 HOH HOH A . F 3 HOH 8 2008 2008 HOH HOH A . F 3 HOH 9 2009 2009 HOH HOH A . F 3 HOH 10 2010 2010 HOH HOH A . F 3 HOH 11 2011 2011 HOH HOH A . F 3 HOH 12 2012 2012 HOH HOH A . F 3 HOH 13 2013 2013 HOH HOH A . F 3 HOH 14 2014 2014 HOH HOH A . F 3 HOH 15 2015 2015 HOH HOH A . F 3 HOH 16 2016 2016 HOH HOH A . F 3 HOH 17 2017 2017 HOH HOH A . F 3 HOH 18 2018 2018 HOH HOH A . F 3 HOH 19 2019 2019 HOH HOH A . F 3 HOH 20 2020 2020 HOH HOH A . F 3 HOH 21 2021 2021 HOH HOH A . F 3 HOH 22 2022 2022 HOH HOH A . F 3 HOH 23 2023 2023 HOH HOH A . F 3 HOH 24 2024 2024 HOH HOH A . F 3 HOH 25 2025 2025 HOH HOH A . F 3 HOH 26 2026 2026 HOH HOH A . F 3 HOH 27 2027 2027 HOH HOH A . F 3 HOH 28 2028 2028 HOH HOH A . F 3 HOH 29 2029 2029 HOH HOH A . F 3 HOH 30 2030 2030 HOH HOH A . F 3 HOH 31 2031 2031 HOH HOH A . F 3 HOH 32 2032 2032 HOH HOH A . F 3 HOH 33 2033 2033 HOH HOH A . F 3 HOH 34 2034 2034 HOH HOH A . F 3 HOH 35 2035 2035 HOH HOH A . F 3 HOH 36 2036 2036 HOH HOH A . F 3 HOH 37 2037 2037 HOH HOH A . F 3 HOH 38 2038 2038 HOH HOH A . F 3 HOH 39 2039 2039 HOH HOH A . F 3 HOH 40 2040 2040 HOH HOH A . F 3 HOH 41 2041 2041 HOH HOH A . F 3 HOH 42 2042 2042 HOH HOH A . F 3 HOH 43 2043 2043 HOH HOH A . F 3 HOH 44 2044 2044 HOH HOH A . G 3 HOH 1 2001 2001 HOH HOH B . G 3 HOH 2 2002 2002 HOH HOH B . G 3 HOH 3 2003 2003 HOH HOH B . G 3 HOH 4 2004 2004 HOH HOH B . G 3 HOH 5 2005 2005 HOH HOH B . G 3 HOH 6 2006 2006 HOH HOH B . G 3 HOH 7 2007 2007 HOH HOH B . G 3 HOH 8 2008 2008 HOH HOH B . G 3 HOH 9 2009 2009 HOH HOH B . G 3 HOH 10 2010 2010 HOH HOH B . G 3 HOH 11 2011 2011 HOH HOH B . G 3 HOH 12 2012 2012 HOH HOH B . G 3 HOH 13 2013 2013 HOH HOH B . G 3 HOH 14 2014 2014 HOH HOH B . G 3 HOH 15 2015 2015 HOH HOH B . G 3 HOH 16 2016 2016 HOH HOH B . G 3 HOH 17 2017 2017 HOH HOH B . G 3 HOH 18 2018 2018 HOH HOH B . G 3 HOH 19 2019 2019 HOH HOH B . G 3 HOH 20 2020 2020 HOH HOH B . G 3 HOH 21 2021 2021 HOH HOH B . G 3 HOH 22 2022 2022 HOH HOH B . G 3 HOH 23 2023 2023 HOH HOH B . G 3 HOH 24 2024 2024 HOH HOH B . G 3 HOH 25 2025 2025 HOH HOH B . G 3 HOH 26 2026 2026 HOH HOH B . G 3 HOH 27 2027 2027 HOH HOH B . G 3 HOH 28 2028 2028 HOH HOH B . G 3 HOH 29 2029 2029 HOH HOH B . G 3 HOH 30 2030 2030 HOH HOH B . G 3 HOH 31 2031 2031 HOH HOH B . G 3 HOH 32 2032 2032 HOH HOH B . G 3 HOH 33 2033 2033 HOH HOH B . G 3 HOH 34 2034 2034 HOH HOH B . G 3 HOH 35 2035 2035 HOH HOH B . G 3 HOH 36 2036 2036 HOH HOH B . G 3 HOH 37 2037 2037 HOH HOH B . G 3 HOH 38 2038 2038 HOH HOH B . G 3 HOH 39 2039 2039 HOH HOH B . G 3 HOH 40 2040 2040 HOH HOH B . G 3 HOH 41 2041 2041 HOH HOH B . G 3 HOH 42 2042 2042 HOH HOH B . G 3 HOH 43 2043 2043 HOH HOH B . G 3 HOH 44 2044 2044 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1670 ? 1 MORE -13.7 ? 1 'SSA (A^2)' 6700 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B CD 1409 ? D CD . 2 1 A HOH 2005 ? F HOH . 3 1 A HOH 2031 ? F HOH . 4 1 A HOH 2036 ? F HOH . 5 1 B HOH 2023 ? G HOH . 6 1 B HOH 2041 ? G HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? B GLU 36 ? B GLU 403 ? 5_545 CD ? C CD . ? A CD 1409 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 8_555 68.5 ? 2 OE2 ? B GLU 36 ? B GLU 403 ? 5_545 CD ? C CD . ? A CD 1409 ? 1_555 OE2 ? A GLU 40 ? A GLU 407 ? 4_555 81.7 ? 3 OE2 ? B GLU 36 ? B GLU 403 ? 8_555 CD ? C CD . ? A CD 1409 ? 1_555 OE2 ? A GLU 40 ? A GLU 407 ? 4_555 71.3 ? 4 OE2 ? B GLU 36 ? B GLU 403 ? 5_545 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? A GLU 40 ? A GLU 407 ? 1_555 153.7 ? 5 OE2 ? B GLU 36 ? B GLU 403 ? 8_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? A GLU 40 ? A GLU 407 ? 1_555 130.8 ? 6 OE2 ? A GLU 40 ? A GLU 407 ? 4_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? A GLU 40 ? A GLU 407 ? 1_555 119.1 ? 7 OE2 ? B GLU 36 ? B GLU 403 ? 5_545 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? A GLU 40 ? A GLU 407 ? 4_555 113.8 ? 8 OE2 ? B GLU 36 ? B GLU 403 ? 8_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? A GLU 40 ? A GLU 407 ? 4_555 114.0 ? 9 OE2 ? A GLU 40 ? A GLU 407 ? 4_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? A GLU 40 ? A GLU 407 ? 4_555 46.6 ? 10 OE1 ? A GLU 40 ? A GLU 407 ? 1_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? A GLU 40 ? A GLU 407 ? 4_555 77.1 ? 11 OE2 ? B GLU 36 ? B GLU 403 ? 5_545 CD ? C CD . ? A CD 1409 ? 1_555 OE2 ? A GLU 40 ? A GLU 407 ? 1_555 95.6 ? 12 OE2 ? B GLU 36 ? B GLU 403 ? 8_555 CD ? C CD . ? A CD 1409 ? 1_555 OE2 ? A GLU 40 ? A GLU 407 ? 1_555 102.3 ? 13 OE2 ? A GLU 40 ? A GLU 407 ? 4_555 CD ? C CD . ? A CD 1409 ? 1_555 OE2 ? A GLU 40 ? A GLU 407 ? 1_555 173.6 ? 14 OE1 ? A GLU 40 ? A GLU 407 ? 1_555 CD ? C CD . ? A CD 1409 ? 1_555 OE2 ? A GLU 40 ? A GLU 407 ? 1_555 65.2 ? 15 OE1 ? A GLU 40 ? A GLU 407 ? 4_555 CD ? C CD . ? A CD 1409 ? 1_555 OE2 ? A GLU 40 ? A GLU 407 ? 1_555 139.4 ? 16 OE2 ? B GLU 36 ? B GLU 403 ? 5_545 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 5_545 56.4 ? 17 OE2 ? B GLU 36 ? B GLU 403 ? 8_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 5_545 124.9 ? 18 OE2 ? A GLU 40 ? A GLU 407 ? 4_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 5_545 98.6 ? 19 OE1 ? A GLU 40 ? A GLU 407 ? 1_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 5_545 102.0 ? 20 OE1 ? A GLU 40 ? A GLU 407 ? 4_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 5_545 89.0 ? 21 OE2 ? A GLU 40 ? A GLU 407 ? 1_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 5_545 84.6 ? 22 OE2 ? B GLU 36 ? B GLU 403 ? 5_545 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 8_555 114.4 ? 23 OE2 ? B GLU 36 ? B GLU 403 ? 8_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 8_555 48.9 ? 24 OE2 ? A GLU 40 ? A GLU 407 ? 4_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 8_555 63.4 ? 25 OE1 ? A GLU 40 ? A GLU 407 ? 1_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 8_555 90.4 ? 26 OE1 ? A GLU 40 ? A GLU 407 ? 4_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 8_555 80.6 ? 27 OE2 ? A GLU 40 ? A GLU 407 ? 1_555 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 8_555 113.1 ? 28 OE1 ? B GLU 36 ? B GLU 403 ? 5_545 CD ? C CD . ? A CD 1409 ? 1_555 OE1 ? B GLU 36 ? B GLU 403 ? 8_555 161.7 ? 29 O ? G HOH . ? B HOH 2044 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 O ? G HOH . ? B HOH 2024 ? 3_655 167.3 ? 30 O ? G HOH . ? B HOH 2044 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 NE2 ? B HIS 21 ? B HIS 388 ? 3_655 113.4 ? 31 O ? G HOH . ? B HOH 2024 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 NE2 ? B HIS 21 ? B HIS 388 ? 3_655 77.1 ? 32 O ? G HOH . ? B HOH 2044 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 O ? G HOH . ? B HOH 2024 ? 1_555 103.2 ? 33 O ? G HOH . ? B HOH 2024 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 O ? G HOH . ? B HOH 2024 ? 1_555 69.3 ? 34 NE2 ? B HIS 21 ? B HIS 388 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 O ? G HOH . ? B HOH 2024 ? 1_555 86.2 ? 35 O ? G HOH . ? B HOH 2044 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 O ? G HOH . ? B HOH 2044 ? 1_555 86.0 ? 36 O ? G HOH . ? B HOH 2024 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 O ? G HOH . ? B HOH 2044 ? 1_555 103.2 ? 37 NE2 ? B HIS 21 ? B HIS 388 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 O ? G HOH . ? B HOH 2044 ? 1_555 82.0 ? 38 O ? G HOH . ? B HOH 2024 ? 1_555 CD ? D CD . ? B CD 1409 ? 1_555 O ? G HOH . ? B HOH 2044 ? 1_555 167.3 ? 39 O ? G HOH . ? B HOH 2044 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 NE2 ? B HIS 21 ? B HIS 388 ? 1_555 82.0 ? 40 O ? G HOH . ? B HOH 2024 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 NE2 ? B HIS 21 ? B HIS 388 ? 1_555 86.2 ? 41 NE2 ? B HIS 21 ? B HIS 388 ? 3_655 CD ? D CD . ? B CD 1409 ? 1_555 NE2 ? B HIS 21 ? B HIS 388 ? 1_555 159.7 ? 42 O ? G HOH . ? B HOH 2024 ? 1_555 CD ? D CD . ? B CD 1409 ? 1_555 NE2 ? B HIS 21 ? B HIS 388 ? 1_555 77.1 ? 43 O ? G HOH . ? B HOH 2044 ? 1_555 CD ? D CD . ? B CD 1409 ? 1_555 NE2 ? B HIS 21 ? B HIS 388 ? 1_555 113.4 ? 44 OE1 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 40 ? B GLU 407 ? 1_555 92.2 ? 45 OE1 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 40 ? B GLU 407 ? 4_565 47.9 ? 46 OE2 ? B GLU 40 ? B GLU 407 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 40 ? B GLU 407 ? 4_565 116.3 ? 47 OE1 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 O ? G HOH . ? B HOH 2042 ? 1_555 100.2 ? 48 OE2 ? B GLU 40 ? B GLU 407 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 O ? G HOH . ? B HOH 2042 ? 1_555 78.6 ? 49 OE2 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 O ? G HOH . ? B HOH 2042 ? 1_555 142.3 ? 50 OE1 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 1_555 159.2 ? 51 OE2 ? B GLU 40 ? B GLU 407 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 1_555 106.2 ? 52 OE2 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 1_555 113.2 ? 53 O ? G HOH . ? B HOH 2042 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 1_555 93.1 ? 54 OE1 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 4_565 99.7 ? 55 OE2 ? B GLU 40 ? B GLU 407 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 4_565 160.6 ? 56 OE2 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 4_565 83.0 ? 57 O ? G HOH . ? B HOH 2042 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 4_565 84.3 ? 58 OE2 ? B GLU 36 ? B GLU 403 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE2 ? B GLU 36 ? B GLU 403 ? 4_565 65.5 ? 59 OE1 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE1 ? B GLU 40 ? B GLU 407 ? 1_555 86.4 ? 60 OE2 ? B GLU 40 ? B GLU 407 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE1 ? B GLU 40 ? B GLU 407 ? 1_555 55.4 ? 61 OE2 ? B GLU 40 ? B GLU 407 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE1 ? B GLU 40 ? B GLU 407 ? 1_555 72.1 ? 62 O ? G HOH . ? B HOH 2042 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE1 ? B GLU 40 ? B GLU 407 ? 1_555 133.8 ? 63 OE2 ? B GLU 36 ? B GLU 403 ? 1_555 CD ? E CD . ? B CD 1410 ? 1_555 OE1 ? B GLU 40 ? B GLU 407 ? 1_555 96.0 ? 64 OE2 ? B GLU 36 ? B GLU 403 ? 4_565 CD ? E CD . ? B CD 1410 ? 1_555 OE1 ? B GLU 40 ? B GLU 407 ? 1_555 140.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-20 2 'Structure model' 1 1 2014-04-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ1 A LYS 386 ? ? O A HOH 2025 ? ? 1.58 2 1 O A HOH 2019 ? ? O B HOH 2032 ? ? 2.00 3 1 OE2 A GLU 402 ? ? O A HOH 2043 ? ? 2.07 4 1 OE2 A GLU 371 ? ? O A HOH 2008 ? ? 2.08 5 1 OD1 B ASP 385 ? ? O B HOH 2020 ? ? 2.09 6 1 OE2 B GLU 382 ? ? O B HOH 2022 ? ? 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2026 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2019 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 1.80 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 368 ? A GLY 1 2 1 Y 1 A GLN 409 ? A GLN 42 3 1 Y 1 A GLY 410 ? A GLY 43 4 1 Y 1 A LYS 411 ? A LYS 44 5 1 Y 1 A PRO 412 ? A PRO 45 6 1 Y 1 A GLY 413 ? A GLY 46 7 1 Y 1 B GLN 409 ? B GLN 42 8 1 Y 1 B GLY 410 ? B GLY 43 9 1 Y 1 B LYS 411 ? B LYS 44 10 1 Y 1 B PRO 412 ? B PRO 45 11 1 Y 1 B GLY 413 ? B GLY 46 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 water HOH #