HEADER HYDROLASE 25-OCT-12 2YOK TITLE CELLOBIOHYDROLASE I CEL7A FROM TRICHODERMA HARZIANUM AT 1.7 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOGLUCANASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN, RESIDUES 18-443; COMPND 5 SYNONYM: 1\,4-BETA-CELLOBIOHYDROLASE, EXOCELLOBIOHYDROLASE I, CBHI, COMPND 6 EXOGLUCANASE I, CELLOBIOHYDROLASE I; COMPND 7 EC: 3.2.1.91; COMPND 8 OTHER_DETAILS: COVALENT LINK BETWEEN N 397 AND NAG 903 COVALENT LINK COMPND 9 BETWEEN N 126 AND NAG 902 COVALENT LINK BETWEEN N 283 AND NAG 901 COMPND 10 COVALENT LINK BETWEEN C 274 AND C 344 COVALENT LINK BETWEEN C 66 AND COMPND 11 C 87 COVALENT LINK BETWEEN C 77 AND C 83 COVALENT LINK BETWEEN C 189 COMPND 12 AND C 222 COVALENT LINK BETWEEN C 251 AND C 256 COVALENT LINK BETWEEN COMPND 13 C 21 AND C 88 COVALENT LINK BETWEEN C 36 AND C 41 COVALENT LINK COMPND 14 BETWEEN C 151 AND C 410 COVALENT LINK BETWEEN C 185 AND C 223 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA LIXII; SOURCE 3 ORGANISM_TAXID: 5544 KEYWDS HYDROLASE, ENZYMATIC HYDROLYSIS, BIOMASS, DEPOLYMERIZATION, KEYWDS 2 CELLULOSIC ETHANOL EXPDTA X-RAY DIFFRACTION AUTHOR L.C.TEXTOR,F.COLUSSI,V.SERPA,F.M.SQUINA,N.PEREIRA JR,I.POLIKARPOV REVDAT 5 20-DEC-23 2YOK 1 HETSYN REVDAT 4 29-JUL-20 2YOK 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 11-MAR-20 2YOK 1 SEQRES LINK REVDAT 2 16-JAN-13 2YOK 1 JRNL REVDAT 1 14-NOV-12 2YOK 0 SPRSDE 14-NOV-12 2YOK 2Y9L JRNL AUTH L.C.TEXTOR,F.COLUSSI,R.L.SILVEIRA,V.SERPA,B.L.DE MELLO, JRNL AUTH 2 J.R.C.MUNIZ,F.M.SQUINA,N.J.PEREIRA,M.S.SKAF,I.POLIKARPOV JRNL TITL JOINT X-RAY CRYSTALLOGRAPHIC AND MOLECULAR DYNAMICS STUDY OF JRNL TITL 2 CELLOBIOHYDROLASE I FROM TRICHODERMA HARZIANUM: DECIPHERING JRNL TITL 3 THE STRUCTURAL FEATURES OF CELLOBIOHYDROLASE CATALYTIC JRNL TITL 4 ACTIVITY. JRNL REF FEBS J. V. 280 56 2013 JRNL REFN ISSN 1742-464X JRNL PMID 23114223 JRNL DOI 10.1111/FEBS.12049 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2115 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3158 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 681 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3454 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3021 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4740 ; 1.483 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6986 ; 0.834 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 6.471 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;36.522 ;25.806 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 504 ;11.790 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.140 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4091 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 796 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4894 -3.3218 -16.1599 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0350 REMARK 3 T33: 0.0343 T12: 0.0026 REMARK 3 T13: 0.0015 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.3346 L22: 0.1403 REMARK 3 L33: 0.0155 L12: -0.0090 REMARK 3 L13: -0.0258 L23: -0.0262 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0119 S13: -0.0273 REMARK 3 S21: -0.0053 S22: -0.0109 S23: 0.0190 REMARK 3 S31: -0.0109 S32: -0.0041 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7190 0.0778 -8.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0341 REMARK 3 T33: 0.0336 T12: -0.0023 REMARK 3 T13: 0.0010 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1526 L22: 0.4183 REMARK 3 L33: 0.1643 L12: -0.0571 REMARK 3 L13: 0.0400 L23: -0.0554 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0102 S13: 0.0025 REMARK 3 S21: 0.0236 S22: -0.0144 S23: -0.0359 REMARK 3 S31: -0.0021 S32: 0.0130 S33: 0.0059 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 379 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7123 4.2434 2.6407 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.0487 REMARK 3 T33: 0.0395 T12: 0.0102 REMARK 3 T13: 0.0087 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.6145 L22: 0.1678 REMARK 3 L33: 1.1431 L12: -0.5135 REMARK 3 L13: 0.5558 L23: -0.2353 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: -0.0928 S13: -0.0564 REMARK 3 S21: 0.0057 S22: 0.0231 S23: 0.0218 REMARK 3 S31: 0.0637 S32: 0.0935 S33: 0.0099 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 403 A 443 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8929 9.4376 -9.7319 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0206 REMARK 3 T33: 0.0298 T12: -0.0063 REMARK 3 T13: 0.0050 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.4475 L22: 0.3320 REMARK 3 L33: 0.3750 L12: -0.2282 REMARK 3 L13: -0.2176 L23: 0.1173 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: 0.0055 S13: 0.0438 REMARK 3 S21: 0.0029 S22: -0.0101 S23: 0.0102 REMARK 3 S31: -0.0384 S32: -0.0017 S33: 0.0061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.46 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42070 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 45.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1CEL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000 AND 5 MM CACL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.36700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.28450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.59350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.28450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.36700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.59350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2054 O HOH A 2095 1.88 REMARK 500 O HOH A 2096 O HOH A 2373 2.06 REMARK 500 OG SER A 255 O HOH A 2441 2.07 REMARK 500 O HOH A 2585 O HOH A 2586 2.13 REMARK 500 O HOH A 2286 O HOH A 2287 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 111 -70.60 -74.41 REMARK 500 ALA A 114 -120.41 49.30 REMARK 500 ASP A 263 79.97 -162.02 REMARK 500 ALA A 384 -61.01 -95.43 REMARK 500 SER A 392 -156.37 -138.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2023 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2183 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2243 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A2292 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A2331 DISTANCE = 6.29 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 A 1444 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y9N RELATED DB: PDB REMARK 900 CELLOBIOHYDROLASE I CEL7A FROM TRICHODERMA HARZIANUM AT 2.9 A REMARK 900 RESOLUTION DBREF 2YOK A 18 443 UNP Q9P8P3 GUX1_TRIHA 18 443 SEQRES 1 A 426 PCA GLN VAL CYS THR GLN GLN ALA GLU THR HIS PRO PRO SEQRES 2 A 426 LEU THR TRP GLN LYS CYS THR ALA SER GLY CYS THR PRO SEQRES 3 A 426 GLN GLN GLY SER VAL VAL LEU ASP ALA ASN TRP ARG TRP SEQRES 4 A 426 THR HIS ASP THR LYS SER THR THR ASN CYS TYR ASP GLY SEQRES 5 A 426 ASN THR TRP SER SER THR LEU CYS PRO ASP ASP ALA THR SEQRES 6 A 426 CYS ALA LYS ASN CYS CYS LEU ASP GLY ALA ASN TYR SER SEQRES 7 A 426 GLY THR TYR GLY VAL THR THR SER GLY ASP ALA LEU THR SEQRES 8 A 426 LEU GLN PHE VAL THR ALA SER ASN VAL GLY SER ARG LEU SEQRES 9 A 426 TYR LEU MET ALA ASN ASP SER THR TYR GLN GLU PHE THR SEQRES 10 A 426 LEU SER GLY ASN GLU PHE SER PHE ASP VAL ASP VAL SER SEQRES 11 A 426 GLN LEU PRO CYS GLY LEU ASN GLY ALA LEU TYR PHE VAL SEQRES 12 A 426 SER MET ASP ALA ASP GLY GLY GLN SER LYS TYR PRO GLY SEQRES 13 A 426 ASN ALA ALA GLY ALA LYS TYR GLY THR GLY TYR CYS ASP SEQRES 14 A 426 SER GLN CYS PRO ARG ASP LEU LYS PHE ILE ASN GLY GLN SEQRES 15 A 426 ALA ASN VAL GLU GLY TRP GLU PRO SER SER ASN ASN ALA SEQRES 16 A 426 ASN THR GLY VAL GLY GLY HIS GLY SER CYS CYS SER GLU SEQRES 17 A 426 MET ASP ILE TRP GLU ALA ASN SER ILE SER GLU ALA LEU SEQRES 18 A 426 THR PRO HIS PRO CYS GLU THR VAL GLY GLN THR MET CYS SEQRES 19 A 426 SER GLY ASP SER CYS GLY GLY THR TYR SER ASN ASP ARG SEQRES 20 A 426 TYR GLY GLY THR CYS ASP PRO ASP GLY CYS ASP TRP ASN SEQRES 21 A 426 PRO TYR ARG LEU GLY ASN THR SER PHE TYR GLY PRO GLY SEQRES 22 A 426 SER SER PHE ALA LEU ASP THR THR LYS LYS LEU THR VAL SEQRES 23 A 426 VAL THR GLN PHE ALA THR ASP GLY SER ILE SER ARG TYR SEQRES 24 A 426 TYR VAL GLN ASN GLY VAL LYS PHE GLN GLN PRO ASN ALA SEQRES 25 A 426 GLN VAL GLY SER TYR SER GLY ASN THR ILE ASN THR ASP SEQRES 26 A 426 TYR CYS ALA ALA GLU GLN THR ALA PHE GLY GLY THR SER SEQRES 27 A 426 PHE THR ASP LYS GLY GLY LEU ALA GLN ILE ASN LYS ALA SEQRES 28 A 426 PHE GLN GLY GLY MET VAL LEU VAL MET SER LEU TRP ASP SEQRES 29 A 426 ASP TYR ALA VAL ASN MET LEU TRP LEU ASP SER THR TYR SEQRES 30 A 426 PRO THR ASN ALA THR ALA SER THR PRO GLY ALA LYS ARG SEQRES 31 A 426 GLY SER CYS SER THR SER SER GLY VAL PRO ALA GLN VAL SEQRES 32 A 426 GLU ALA GLN SER PRO ASN SER LYS VAL ILE TYR SER ASN SEQRES 33 A 426 ILE ARG PHE GLY PRO ILE GLY SER THR GLY MODRES 2YOK ASN A 126 ASN GLYCOSYLATION SITE MODRES 2YOK ASN A 283 ASN GLYCOSYLATION SITE MODRES 2YOK ASN A 397 ASN GLYCOSYLATION SITE MODRES 2YOK PCA A 18 GLU PYROGLUTAMIC ACID HET PCA A 18 8 HET NAG A 901 14 HET NAG A 902 14 HET NAG A 903 14 HET PE4 A1444 17 HET PEG A1445 7 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 PE4 C16 H34 O8 FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *681(H2 O) HELIX 1 1 ALA A 52 ARG A 55 5 4 HELIX 2 2 ASP A 79 ASN A 86 1 8 HELIX 3 3 ASN A 93 GLY A 99 1 7 HELIX 4 4 ALA A 176 GLY A 181 5 6 HELIX 5 5 ASP A 254 GLY A 257 5 4 HELIX 6 6 ASN A 340 GLY A 352 1 13 HELIX 7 7 THR A 354 LYS A 359 1 6 HELIX 8 8 GLY A 360 GLY A 371 1 12 HELIX 9 9 MET A 387 SER A 392 1 6 HELIX 10 10 VAL A 416 SER A 424 1 9 SHEET 1 AA 3 GLN A 19 VAL A 20 0 SHEET 2 AA 3 CYS A 87 LEU A 89 1 O CYS A 87 N GLN A 19 SHEET 3 AA 3 THR A 57 ASP A 59 -1 O HIS A 58 N CYS A 88 SHEET 1 AB 7 VAL A 100 SER A 103 0 SHEET 2 AB 7 ALA A 106 GLN A 110 -1 O ALA A 106 N SER A 103 SHEET 3 AB 7 LYS A 428 PRO A 438 -1 O VAL A 429 N LEU A 109 SHEET 4 AB 7 ASN A 138 ASP A 145 -1 O GLU A 139 N GLY A 437 SHEET 5 AB 7 LEU A 301 PHE A 307 -1 O LEU A 301 N VAL A 144 SHEET 6 AB 7 ILE A 313 GLN A 319 -1 O SER A 314 N GLN A 306 SHEET 7 AB 7 VAL A 322 GLN A 325 -1 O VAL A 322 N GLN A 319 SHEET 1 AC 7 VAL A 100 SER A 103 0 SHEET 2 AC 7 ALA A 106 GLN A 110 -1 O ALA A 106 N SER A 103 SHEET 3 AC 7 LYS A 428 PRO A 438 -1 O VAL A 429 N LEU A 109 SHEET 4 AC 7 PRO A 30 THR A 37 1 O GLN A 34 N PHE A 436 SHEET 5 AC 7 GLY A 40 LEU A 50 -1 O GLY A 40 N THR A 37 SHEET 6 AC 7 SER A 119 ASN A 126 -1 O TYR A 122 N VAL A 49 SHEET 7 AC 7 THR A 129 TYR A 130 -1 O THR A 129 N ALA A 125 SHEET 1 AD10 VAL A 100 SER A 103 0 SHEET 2 AD10 ALA A 106 GLN A 110 -1 O ALA A 106 N SER A 103 SHEET 3 AD10 LYS A 428 PRO A 438 -1 O VAL A 429 N LEU A 109 SHEET 4 AD10 PRO A 30 THR A 37 1 O GLN A 34 N PHE A 436 SHEET 5 AD10 GLY A 40 LEU A 50 -1 O GLY A 40 N THR A 37 SHEET 6 AD10 SER A 119 ASN A 126 -1 O TYR A 122 N VAL A 49 SHEET 7 AD10 VAL A 374 TRP A 380 -1 O LEU A 375 N LEU A 123 SHEET 8 AD10 ASN A 154 VAL A 160 -1 O ASN A 154 N TRP A 380 SHEET 9 AD10 GLU A 225 ALA A 231 -1 O MET A 226 N PHE A 159 SHEET 10 AD10 GLU A 236 HIS A 241 -1 O ALA A 237 N GLU A 230 SHEET 1 AE 2 THR A 129 TYR A 130 0 SHEET 2 AE 2 SER A 119 ASN A 126 -1 N ALA A 125 O THR A 129 SHEET 1 AF 2 TYR A 67 ASP A 68 0 SHEET 2 AF 2 THR A 71 TRP A 72 -1 O THR A 71 N ASP A 68 SHEET 1 AG 2 VAL A 112 THR A 113 0 SHEET 2 AG 2 ASN A 116 VAL A 117 -1 O ASN A 116 N THR A 113 SHEET 1 AH 2 PHE A 195 ILE A 196 0 SHEET 2 AH 2 GLN A 199 ALA A 200 -1 O GLN A 199 N ILE A 196 SHEET 1 AI 2 GLU A 206 PRO A 207 0 SHEET 2 AI 2 GLY A 215 VAL A 216 -1 O VAL A 216 N GLU A 206 SHEET 1 AJ 2 HIS A 219 CYS A 222 0 SHEET 2 AJ 2 THR A 249 SER A 252 -1 O THR A 249 N CYS A 222 SHEET 1 AK 2 TYR A 287 GLY A 288 0 SHEET 2 AK 2 LEU A 295 ASP A 296 1 O LEU A 295 N GLY A 288 SHEET 1 AL 2 ALA A 329 VAL A 331 0 SHEET 2 AL 2 TYR A 334 GLY A 336 -1 O TYR A 334 N VAL A 331 SSBOND 1 CYS A 21 CYS A 88 1555 1555 2.06 SSBOND 2 CYS A 36 CYS A 41 1555 1555 2.06 SSBOND 3 CYS A 66 CYS A 87 1555 1555 2.02 SSBOND 4 CYS A 77 CYS A 83 1555 1555 2.04 SSBOND 5 CYS A 151 CYS A 410 1555 1555 2.08 SSBOND 6 CYS A 185 CYS A 223 1555 1555 2.06 SSBOND 7 CYS A 189 CYS A 222 1555 1555 2.05 SSBOND 8 CYS A 243 CYS A 269 1555 1555 2.07 SSBOND 9 CYS A 251 CYS A 256 1555 1555 2.05 SSBOND 10 CYS A 274 CYS A 344 1555 1555 2.02 LINK C PCA A 18 N GLN A 19 1555 1555 1.33 LINK ND2 ASN A 126 C1 NAG A 902 1555 1555 1.58 LINK ND2 ASN A 283 C1 NAG A 901 1555 1555 1.76 LINK ND2 ASN A 397 C1 NAG A 903 1555 1555 1.70 CISPEP 1 TYR A 394 PRO A 395 0 -4.45 CRYST1 56.734 69.187 90.569 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017626 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011041 0.00000 HETATM 1 N PCA A 18 2.716 -13.109 -18.196 1.00 8.78 N ANISOU 1 N PCA A 18 907 1083 1344 38 -30 -112 N HETATM 2 CA PCA A 18 1.625 -12.150 -18.400 1.00 8.84 C ANISOU 2 CA PCA A 18 919 1097 1343 41 -33 -111 C HETATM 3 CB PCA A 18 2.237 -10.825 -17.933 1.00 8.57 C ANISOU 3 CB PCA A 18 903 1073 1280 41 -25 -98 C HETATM 4 CG PCA A 18 3.755 -11.031 -17.981 1.00 8.55 C ANISOU 4 CG PCA A 18 907 1074 1267 39 -22 -98 C HETATM 5 CD PCA A 18 3.885 -12.532 -17.992 1.00 8.77 C ANISOU 5 CD PCA A 18 919 1089 1321 37 -24 -105 C HETATM 6 OE PCA A 18 4.950 -13.133 -17.843 1.00 9.23 O ANISOU 6 OE PCA A 18 977 1146 1384 34 -21 -104 O HETATM 7 C PCA A 18 1.217 -12.015 -19.855 1.00 9.15 C ANISOU 7 C PCA A 18 956 1143 1374 46 -46 -131 C HETATM 8 O PCA A 18 2.030 -12.271 -20.743 1.00 8.70 O ANISOU 8 O PCA A 18 902 1094 1309 46 -50 -145 O