data_2YOZ # _entry.id 2YOZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YOZ pdb_00002yoz 10.2210/pdb2yoz/pdb PDBE EBI-54615 ? ? WWPDB D_1290054615 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XMI unspecified ;CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- PHOSPHODIESTERASE, COMPLEXED WITH CITRATE ; PDB 2Y1P unspecified ;CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- PHOSPHODIESTERASE, COMPLEXED WITH CITRATE ; PDB 2Y3X unspecified ;CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- PHOSPHODIESTERASE, COMPLEXED WITH SULFATE ; PDB 2YDB unspecified ;CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC NADP ; PDB 2YDC unspecified ;CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- PHOSPHODIESTERASE, SOAKED WITH GTP ; PDB 2YDD unspecified ;CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC AMP ; PDB 2YP0 unspecified ;CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- PHOSPHODIESTERASE, CRYSTALLIZED WITH 2'-AMPS ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YOZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-10-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Myllykoski, M.' 1 'Raasakka, A.' 2 'Lehtimaki, M.' 3 'Han, H.' 4 'Kursula, P.' 5 # _citation.id primary _citation.title ;Crystallographic Analysis of the Reaction Cycle of 2',3'-Cyclic Nucleotide 3'-Phosphodiesterase, a Unique Member of the 2H Phosphoesterase Family ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 425 _citation.page_first 4307 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23831225 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2013.06.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Myllykoski, M.' 1 ? primary 'Raasakka, A.' 2 ? primary 'Lehtimaki, M.' 3 ? primary 'Han, H.' 4 ? primary 'Kursula, I.' 5 ? primary 'Kursula, P.' 6 ? # _cell.entry_id 2YOZ _cell.length_a 38.400 _cell.length_b 47.880 _cell.length_c 51.150 _cell.angle_alpha 90.00 _cell.angle_beta 94.45 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YOZ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;2,3-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE ; 24293.928 1 3.1.4.37 ? 'C-TERMINAL CATALYTIC DOMAIN, RESIDUES 159-378' ? 2 non-polymer syn "2'-O-(sulfidophosphinato)adenosine" 363.287 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 4 ? ? ? ? 6 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 7 water nat water 18.015 97 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CNP, CNPASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCD YGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAAD VQPVQTGLDLLDILQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCD YGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAAD VQPVQTGLDLLDILQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 LEU n 1 4 GLU n 1 5 LYS n 1 6 ASP n 1 7 PHE n 1 8 LEU n 1 9 PRO n 1 10 LEU n 1 11 TYR n 1 12 PHE n 1 13 GLY n 1 14 TRP n 1 15 PHE n 1 16 LEU n 1 17 THR n 1 18 LYS n 1 19 LYS n 1 20 SER n 1 21 SER n 1 22 GLU n 1 23 THR n 1 24 LEU n 1 25 ARG n 1 26 LYS n 1 27 ALA n 1 28 GLY n 1 29 GLN n 1 30 VAL n 1 31 PHE n 1 32 LEU n 1 33 GLU n 1 34 GLU n 1 35 LEU n 1 36 GLY n 1 37 ASN n 1 38 HIS n 1 39 LYS n 1 40 ALA n 1 41 PHE n 1 42 LYS n 1 43 LYS n 1 44 GLU n 1 45 LEU n 1 46 ARG n 1 47 HIS n 1 48 PHE n 1 49 ILE n 1 50 SER n 1 51 GLY n 1 52 ASP n 1 53 GLU n 1 54 PRO n 1 55 LYS n 1 56 GLU n 1 57 LYS n 1 58 LEU n 1 59 GLU n 1 60 LEU n 1 61 VAL n 1 62 SER n 1 63 TYR n 1 64 PHE n 1 65 GLY n 1 66 LYS n 1 67 ARG n 1 68 PRO n 1 69 PRO n 1 70 GLY n 1 71 VAL n 1 72 LEU n 1 73 HIS n 1 74 CYS n 1 75 THR n 1 76 THR n 1 77 LYS n 1 78 PHE n 1 79 CYS n 1 80 ASP n 1 81 TYR n 1 82 GLY n 1 83 LYS n 1 84 ALA n 1 85 ALA n 1 86 GLY n 1 87 ALA n 1 88 GLU n 1 89 GLU n 1 90 TYR n 1 91 ALA n 1 92 GLN n 1 93 GLN n 1 94 GLU n 1 95 VAL n 1 96 VAL n 1 97 LYS n 1 98 ARG n 1 99 SER n 1 100 TYR n 1 101 GLY n 1 102 LYS n 1 103 ALA n 1 104 PHE n 1 105 LYS n 1 106 LEU n 1 107 SER n 1 108 ILE n 1 109 SER n 1 110 ALA n 1 111 LEU n 1 112 PHE n 1 113 VAL n 1 114 THR n 1 115 PRO n 1 116 LYS n 1 117 THR n 1 118 ALA n 1 119 GLY n 1 120 ALA n 1 121 GLN n 1 122 VAL n 1 123 VAL n 1 124 LEU n 1 125 THR n 1 126 ASP n 1 127 GLN n 1 128 GLU n 1 129 LEU n 1 130 GLN n 1 131 LEU n 1 132 TRP n 1 133 PRO n 1 134 SER n 1 135 ASP n 1 136 LEU n 1 137 ASP n 1 138 LYS n 1 139 PRO n 1 140 SER n 1 141 ALA n 1 142 SER n 1 143 GLU n 1 144 GLY n 1 145 LEU n 1 146 PRO n 1 147 PRO n 1 148 GLY n 1 149 SER n 1 150 ARG n 1 151 ALA n 1 152 HIS n 1 153 VAL n 1 154 THR n 1 155 LEU n 1 156 GLY n 1 157 CYS n 1 158 ALA n 1 159 ALA n 1 160 ASP n 1 161 VAL n 1 162 GLN n 1 163 PRO n 1 164 VAL n 1 165 GLN n 1 166 THR n 1 167 GLY n 1 168 LEU n 1 169 ASP n 1 170 LEU n 1 171 LEU n 1 172 ASP n 1 173 ILE n 1 174 LEU n 1 175 GLN n 1 176 GLN n 1 177 VAL n 1 178 LYS n 1 179 GLY n 1 180 GLY n 1 181 SER n 1 182 GLN n 1 183 GLY n 1 184 GLU n 1 185 ALA n 1 186 VAL n 1 187 GLY n 1 188 GLU n 1 189 LEU n 1 190 PRO n 1 191 ARG n 1 192 GLY n 1 193 LYS n 1 194 LEU n 1 195 TYR n 1 196 SER n 1 197 LEU n 1 198 GLY n 1 199 LYS n 1 200 GLY n 1 201 ARG n 1 202 TRP n 1 203 MET n 1 204 LEU n 1 205 SER n 1 206 LEU n 1 207 THR n 1 208 LYS n 1 209 LYS n 1 210 MET n 1 211 GLU n 1 212 VAL n 1 213 LYS n 1 214 ALA n 1 215 ILE n 1 216 PHE n 1 217 THR n 1 218 GLY n 1 219 TYR n 1 220 TYR n 1 221 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ROSETTA _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PTH 27' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CN37_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P16330 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YOZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 221 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P16330 _struct_ref_seq.db_align_beg 159 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 378 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 159 _struct_ref_seq.pdbx_auth_seq_align_end 378 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2YOZ _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P16330 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 158 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OVE non-polymer . "2'-O-(sulfidophosphinato)adenosine" "ADENOSINE-2'-MONOPHOSPHOROTHIOATE" 'C10 H14 N5 O6 P S' 363.287 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YOZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.9 _exptl_crystal.density_percent_sol 35.1 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;250 UM PROTEIN AND 10 MM 2, 3(SP)-CYCLIC-AMPS MIXED IN 0.5 PLUS 0.5 DROPS WITH 30% PEG4000 AND 50 MM ACETATE (1:1 MIX OF PH 3 AND PH 5) IN 4C TEMP ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR555 FLAT PANEL' _diffrn_detector.pdbx_collection_date 2012-04-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.815000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength 0.815000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YOZ _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.10 _reflns.d_resolution_high 2.10 _reflns.number_obs 10896 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.70 _reflns.B_iso_Wilson_estimate 28.21 _reflns.pdbx_redundancy 3.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs 0.52 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.00 _reflns_shell.pdbx_redundancy 2.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YOZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10872 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 16.999 _refine.ls_d_res_high 2.100 _refine.ls_percent_reflns_obs 99.44 _refine.ls_R_factor_obs 0.1773 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1748 _refine.ls_R_factor_R_free 0.2222 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 543 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 33.9 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'HYDROGENS WERE INCLUDED IN RIDING POSITION. RESIDUES 158-160 AND 206-212 WERE EXCLUDED DUE TO INSUFFICIENT ELECTRON DENSITY.' _refine.pdbx_starting_model 'PDB ENTRY 2XMI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.pdbx_overall_phase_error 24.59 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1646 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 60 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1803 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 16.999 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 1737 'X-RAY DIFFRACTION' ? f_angle_d 0.817 ? ? 2331 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.293 ? ? 639 'X-RAY DIFFRACTION' ? f_chiral_restr 0.046 ? ? 248 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 293 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.0999 2.3108 2549 0.2210 99.00 0.3067 . . 134 . . 'X-RAY DIFFRACTION' . 2.3108 2.6441 2585 0.2092 100.00 0.2688 . . 136 . . 'X-RAY DIFFRACTION' . 2.6441 3.3272 2583 0.1712 100.00 0.2638 . . 136 . . 'X-RAY DIFFRACTION' . 3.3272 16.9991 2612 0.1548 99.00 0.1709 . . 137 . . # _struct.entry_id 2YOZ _struct.title ;Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, crystallized with 2'-AMPS ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YOZ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, MYELIN, NERVOUS SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 5 ? J N N 7 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 17 ? HIS A 38 ? THR A 174 HIS A 195 1 ? 22 HELX_P HELX_P2 2 HIS A 38 ? ARG A 46 ? HIS A 195 ARG A 203 1 ? 9 HELX_P HELX_P3 3 GLU A 59 ? PHE A 64 ? GLU A 216 PHE A 221 1 ? 6 HELX_P HELX_P4 4 ASP A 80 ? LYS A 83 ? ASP A 237 LYS A 240 5 ? 4 HELX_P HELX_P5 5 GLY A 86 ? GLN A 92 ? GLY A 243 GLN A 249 1 ? 7 HELX_P HELX_P6 6 GLN A 93 ? SER A 99 ? GLN A 250 SER A 256 1 ? 7 HELX_P HELX_P7 7 THR A 125 ? GLN A 130 ? THR A 282 GLN A 287 1 ? 6 HELX_P HELX_P8 8 PRO A 139 ? GLY A 144 ? PRO A 296 GLY A 301 5 ? 6 HELX_P HELX_P9 9 VAL A 164 ? GLY A 180 ? VAL A 321 GLY A 337 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 73 ? PHE A 78 ? HIS A 230 PHE A 235 AA 2 TYR A 11 ? LEU A 16 ? TYR A 168 LEU A 173 AA 3 ARG A 201 ? TYR A 219 ? ARG A 358 TYR A 376 AA 4 GLY A 192 ? GLY A 198 ? GLY A 349 GLY A 355 AA 5 GLY A 187 ? LEU A 189 ? GLY A 344 LEU A 346 AB 1 HIS A 73 ? PHE A 78 ? HIS A 230 PHE A 235 AB 2 TYR A 11 ? LEU A 16 ? TYR A 168 LEU A 173 AB 3 ARG A 201 ? TYR A 219 ? ARG A 358 TYR A 376 AB 4 LYS A 102 ? VAL A 113 ? LYS A 259 VAL A 270 AB 5 THR A 117 ? VAL A 123 ? THR A 274 VAL A 280 AB 6 HIS A 152 ? CYS A 157 ? HIS A 309 CYS A 314 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 76 ? N THR A 233 O PHE A 12 ? O PHE A 169 AA 2 3 N PHE A 15 ? N PHE A 172 O ILE A 215 ? O ILE A 372 AA 3 4 N SER A 205 ? N SER A 362 O LYS A 193 ? O LYS A 350 AA 4 5 N LEU A 194 ? N LEU A 351 O GLY A 187 ? O GLY A 344 AB 1 2 N THR A 76 ? N THR A 233 O PHE A 12 ? O PHE A 169 AB 2 3 N PHE A 15 ? N PHE A 172 O ILE A 215 ? O ILE A 372 AB 3 4 N PHE A 216 ? N PHE A 373 O LYS A 102 ? O LYS A 259 AB 4 5 N PHE A 112 ? N PHE A 269 O GLY A 119 ? O GLY A 276 AB 5 6 N ALA A 120 ? N ALA A 277 O VAL A 153 ? O VAL A 310 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A OVE 1379 ? 12 'BINDING SITE FOR RESIDUE OVE A 1379' AC2 Software A GOL 1380 ? 2 'BINDING SITE FOR RESIDUE GOL A 1380' AC3 Software A 1PE 1381 ? 3 'BINDING SITE FOR RESIDUE 1PE A 1381' AC4 Software A ACT 1382 ? 4 'BINDING SITE FOR RESIDUE ACT A 1382' AC5 Software A ACT 1383 ? 4 'BINDING SITE FOR RESIDUE ACT A 1383' AC6 Software A ACT 1384 ? 1 'BINDING SITE FOR RESIDUE ACT A 1384' AC7 Software A CL 1385 ? 3 'BINDING SITE FOR RESIDUE CL A 1385' AC8 Software A ACT 1386 ? 2 'BINDING SITE FOR RESIDUE ACT A 1386' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 TYR A 11 ? TYR A 168 . ? 1_555 ? 2 AC1 12 HIS A 73 ? HIS A 230 . ? 1_555 ? 3 AC1 12 THR A 75 ? THR A 232 . ? 1_555 ? 4 AC1 12 PHE A 78 ? PHE A 235 . ? 1_555 ? 5 AC1 12 HIS A 152 ? HIS A 309 . ? 1_555 ? 6 AC1 12 THR A 154 ? THR A 311 . ? 1_555 ? 7 AC1 12 PRO A 163 ? PRO A 320 . ? 1_555 ? 8 AC1 12 VAL A 164 ? VAL A 321 . ? 1_555 ? 9 AC1 12 THR A 166 ? THR A 323 . ? 1_555 ? 10 AC1 12 HOH J . ? HOH A 2033 . ? 1_555 ? 11 AC1 12 HOH J . ? HOH A 2071 . ? 1_555 ? 12 AC1 12 HOH J . ? HOH A 2074 . ? 1_555 ? 13 AC2 2 ARG A 191 ? ARG A 348 . ? 1_555 ? 14 AC2 2 LYS A 209 ? LYS A 366 . ? 1_555 ? 15 AC3 3 ALA A 40 ? ALA A 197 . ? 1_555 ? 16 AC3 3 LYS A 43 ? LYS A 200 . ? 1_555 ? 17 AC3 3 SER A 196 ? SER A 353 . ? 1_555 ? 18 AC4 4 PHE A 41 ? PHE A 198 . ? 1_555 ? 19 AC4 4 THR A 114 ? THR A 271 . ? 1_555 ? 20 AC4 4 PRO A 115 ? PRO A 272 . ? 1_555 ? 21 AC4 4 GLY A 200 ? GLY A 357 . ? 1_555 ? 22 AC5 4 LYS A 66 ? LYS A 223 . ? 1_555 ? 23 AC5 4 ARG A 67 ? ARG A 224 . ? 1_555 ? 24 AC5 4 PRO A 68 ? PRO A 225 . ? 1_555 ? 25 AC5 4 HOH J . ? HOH A 2073 . ? 1_555 ? 26 AC6 1 LYS A 105 ? LYS A 262 . ? 1_555 ? 27 AC7 3 TRP A 132 ? TRP A 289 . ? 1_555 ? 28 AC7 3 SER A 140 ? SER A 297 . ? 1_555 ? 29 AC7 3 GLY A 148 ? GLY A 305 . ? 1_555 ? 30 AC8 2 LYS A 213 ? LYS A 370 . ? 1_555 ? 31 AC8 2 HOH J . ? HOH A 2094 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YOZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YOZ _atom_sites.fract_transf_matrix[1][1] 0.026042 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002027 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020886 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019609 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 158 ? ? ? A . n A 1 2 GLY 2 159 ? ? ? A . n A 1 3 LEU 3 160 ? ? ? A . n A 1 4 GLU 4 161 161 GLU GLU A . n A 1 5 LYS 5 162 162 LYS LYS A . n A 1 6 ASP 6 163 163 ASP ASP A . n A 1 7 PHE 7 164 164 PHE PHE A . n A 1 8 LEU 8 165 165 LEU LEU A . n A 1 9 PRO 9 166 166 PRO PRO A . n A 1 10 LEU 10 167 167 LEU LEU A . n A 1 11 TYR 11 168 168 TYR TYR A . n A 1 12 PHE 12 169 169 PHE PHE A . n A 1 13 GLY 13 170 170 GLY GLY A . n A 1 14 TRP 14 171 171 TRP TRP A . n A 1 15 PHE 15 172 172 PHE PHE A . n A 1 16 LEU 16 173 173 LEU LEU A . n A 1 17 THR 17 174 174 THR THR A . n A 1 18 LYS 18 175 175 LYS LYS A . n A 1 19 LYS 19 176 176 LYS LYS A . n A 1 20 SER 20 177 177 SER SER A . n A 1 21 SER 21 178 178 SER SER A . n A 1 22 GLU 22 179 179 GLU GLU A . n A 1 23 THR 23 180 180 THR THR A . n A 1 24 LEU 24 181 181 LEU LEU A . n A 1 25 ARG 25 182 182 ARG ARG A . n A 1 26 LYS 26 183 183 LYS LYS A . n A 1 27 ALA 27 184 184 ALA ALA A . n A 1 28 GLY 28 185 185 GLY GLY A . n A 1 29 GLN 29 186 186 GLN GLN A . n A 1 30 VAL 30 187 187 VAL VAL A . n A 1 31 PHE 31 188 188 PHE PHE A . n A 1 32 LEU 32 189 189 LEU LEU A . n A 1 33 GLU 33 190 190 GLU GLU A . n A 1 34 GLU 34 191 191 GLU GLU A . n A 1 35 LEU 35 192 192 LEU LEU A . n A 1 36 GLY 36 193 193 GLY GLY A . n A 1 37 ASN 37 194 194 ASN ASN A . n A 1 38 HIS 38 195 195 HIS HIS A . n A 1 39 LYS 39 196 196 LYS LYS A . n A 1 40 ALA 40 197 197 ALA ALA A . n A 1 41 PHE 41 198 198 PHE PHE A . n A 1 42 LYS 42 199 199 LYS LYS A . n A 1 43 LYS 43 200 200 LYS LYS A . n A 1 44 GLU 44 201 201 GLU GLU A . n A 1 45 LEU 45 202 202 LEU LEU A . n A 1 46 ARG 46 203 203 ARG ARG A . n A 1 47 HIS 47 204 204 HIS HIS A . n A 1 48 PHE 48 205 205 PHE PHE A . n A 1 49 ILE 49 206 ? ? ? A . n A 1 50 SER 50 207 ? ? ? A . n A 1 51 GLY 51 208 ? ? ? A . n A 1 52 ASP 52 209 ? ? ? A . n A 1 53 GLU 53 210 ? ? ? A . n A 1 54 PRO 54 211 ? ? ? A . n A 1 55 LYS 55 212 ? ? ? A . n A 1 56 GLU 56 213 213 GLU GLU A . n A 1 57 LYS 57 214 214 LYS LYS A . n A 1 58 LEU 58 215 215 LEU LEU A . n A 1 59 GLU 59 216 216 GLU GLU A . n A 1 60 LEU 60 217 217 LEU LEU A . n A 1 61 VAL 61 218 218 VAL VAL A . n A 1 62 SER 62 219 219 SER SER A . n A 1 63 TYR 63 220 220 TYR TYR A . n A 1 64 PHE 64 221 221 PHE PHE A . n A 1 65 GLY 65 222 222 GLY GLY A . n A 1 66 LYS 66 223 223 LYS LYS A . n A 1 67 ARG 67 224 224 ARG ARG A . n A 1 68 PRO 68 225 225 PRO PRO A . n A 1 69 PRO 69 226 226 PRO PRO A . n A 1 70 GLY 70 227 227 GLY GLY A . n A 1 71 VAL 71 228 228 VAL VAL A . n A 1 72 LEU 72 229 229 LEU LEU A . n A 1 73 HIS 73 230 230 HIS HIS A . n A 1 74 CYS 74 231 231 CYS CYS A . n A 1 75 THR 75 232 232 THR THR A . n A 1 76 THR 76 233 233 THR THR A . n A 1 77 LYS 77 234 234 LYS LYS A . n A 1 78 PHE 78 235 235 PHE PHE A . n A 1 79 CYS 79 236 236 CYS CYS A . n A 1 80 ASP 80 237 237 ASP ASP A . n A 1 81 TYR 81 238 238 TYR TYR A . n A 1 82 GLY 82 239 239 GLY GLY A . n A 1 83 LYS 83 240 240 LYS LYS A . n A 1 84 ALA 84 241 241 ALA ALA A . n A 1 85 ALA 85 242 242 ALA ALA A . n A 1 86 GLY 86 243 243 GLY GLY A . n A 1 87 ALA 87 244 244 ALA ALA A . n A 1 88 GLU 88 245 245 GLU GLU A . n A 1 89 GLU 89 246 246 GLU GLU A . n A 1 90 TYR 90 247 247 TYR TYR A . n A 1 91 ALA 91 248 248 ALA ALA A . n A 1 92 GLN 92 249 249 GLN GLN A . n A 1 93 GLN 93 250 250 GLN GLN A . n A 1 94 GLU 94 251 251 GLU GLU A . n A 1 95 VAL 95 252 252 VAL VAL A . n A 1 96 VAL 96 253 253 VAL VAL A . n A 1 97 LYS 97 254 254 LYS LYS A . n A 1 98 ARG 98 255 255 ARG ARG A . n A 1 99 SER 99 256 256 SER SER A . n A 1 100 TYR 100 257 257 TYR TYR A . n A 1 101 GLY 101 258 258 GLY GLY A . n A 1 102 LYS 102 259 259 LYS LYS A . n A 1 103 ALA 103 260 260 ALA ALA A . n A 1 104 PHE 104 261 261 PHE PHE A . n A 1 105 LYS 105 262 262 LYS LYS A . n A 1 106 LEU 106 263 263 LEU LEU A . n A 1 107 SER 107 264 264 SER SER A . n A 1 108 ILE 108 265 265 ILE ILE A . n A 1 109 SER 109 266 266 SER SER A . n A 1 110 ALA 110 267 267 ALA ALA A . n A 1 111 LEU 111 268 268 LEU LEU A . n A 1 112 PHE 112 269 269 PHE PHE A . n A 1 113 VAL 113 270 270 VAL VAL A . n A 1 114 THR 114 271 271 THR THR A . n A 1 115 PRO 115 272 272 PRO PRO A . n A 1 116 LYS 116 273 273 LYS LYS A . n A 1 117 THR 117 274 274 THR THR A . n A 1 118 ALA 118 275 275 ALA ALA A . n A 1 119 GLY 119 276 276 GLY GLY A . n A 1 120 ALA 120 277 277 ALA ALA A . n A 1 121 GLN 121 278 278 GLN GLN A . n A 1 122 VAL 122 279 279 VAL VAL A . n A 1 123 VAL 123 280 280 VAL VAL A . n A 1 124 LEU 124 281 281 LEU LEU A . n A 1 125 THR 125 282 282 THR THR A . n A 1 126 ASP 126 283 283 ASP ASP A . n A 1 127 GLN 127 284 284 GLN GLN A . n A 1 128 GLU 128 285 285 GLU GLU A . n A 1 129 LEU 129 286 286 LEU LEU A . n A 1 130 GLN 130 287 287 GLN GLN A . n A 1 131 LEU 131 288 288 LEU LEU A . n A 1 132 TRP 132 289 289 TRP TRP A . n A 1 133 PRO 133 290 290 PRO PRO A . n A 1 134 SER 134 291 291 SER SER A . n A 1 135 ASP 135 292 292 ASP ASP A . n A 1 136 LEU 136 293 293 LEU LEU A . n A 1 137 ASP 137 294 294 ASP ASP A . n A 1 138 LYS 138 295 295 LYS LYS A . n A 1 139 PRO 139 296 296 PRO PRO A . n A 1 140 SER 140 297 297 SER SER A . n A 1 141 ALA 141 298 298 ALA ALA A . n A 1 142 SER 142 299 299 SER SER A . n A 1 143 GLU 143 300 300 GLU GLU A . n A 1 144 GLY 144 301 301 GLY GLY A . n A 1 145 LEU 145 302 302 LEU LEU A . n A 1 146 PRO 146 303 303 PRO PRO A . n A 1 147 PRO 147 304 304 PRO PRO A . n A 1 148 GLY 148 305 305 GLY GLY A . n A 1 149 SER 149 306 306 SER SER A . n A 1 150 ARG 150 307 307 ARG ARG A . n A 1 151 ALA 151 308 308 ALA ALA A . n A 1 152 HIS 152 309 309 HIS HIS A . n A 1 153 VAL 153 310 310 VAL VAL A . n A 1 154 THR 154 311 311 THR THR A . n A 1 155 LEU 155 312 312 LEU LEU A . n A 1 156 GLY 156 313 313 GLY GLY A . n A 1 157 CYS 157 314 314 CYS CYS A . n A 1 158 ALA 158 315 315 ALA ALA A . n A 1 159 ALA 159 316 316 ALA ALA A . n A 1 160 ASP 160 317 317 ASP ASP A . n A 1 161 VAL 161 318 318 VAL VAL A . n A 1 162 GLN 162 319 319 GLN GLN A . n A 1 163 PRO 163 320 320 PRO PRO A . n A 1 164 VAL 164 321 321 VAL VAL A . n A 1 165 GLN 165 322 322 GLN GLN A . n A 1 166 THR 166 323 323 THR THR A . n A 1 167 GLY 167 324 324 GLY GLY A . n A 1 168 LEU 168 325 325 LEU LEU A . n A 1 169 ASP 169 326 326 ASP ASP A . n A 1 170 LEU 170 327 327 LEU LEU A . n A 1 171 LEU 171 328 328 LEU LEU A . n A 1 172 ASP 172 329 329 ASP ASP A . n A 1 173 ILE 173 330 330 ILE ILE A . n A 1 174 LEU 174 331 331 LEU LEU A . n A 1 175 GLN 175 332 332 GLN GLN A . n A 1 176 GLN 176 333 333 GLN GLN A . n A 1 177 VAL 177 334 334 VAL VAL A . n A 1 178 LYS 178 335 335 LYS LYS A . n A 1 179 GLY 179 336 336 GLY GLY A . n A 1 180 GLY 180 337 337 GLY GLY A . n A 1 181 SER 181 338 338 SER SER A . n A 1 182 GLN 182 339 339 GLN GLN A . n A 1 183 GLY 183 340 340 GLY GLY A . n A 1 184 GLU 184 341 341 GLU GLU A . n A 1 185 ALA 185 342 342 ALA ALA A . n A 1 186 VAL 186 343 343 VAL VAL A . n A 1 187 GLY 187 344 344 GLY GLY A . n A 1 188 GLU 188 345 345 GLU GLU A . n A 1 189 LEU 189 346 346 LEU LEU A . n A 1 190 PRO 190 347 347 PRO PRO A . n A 1 191 ARG 191 348 348 ARG ARG A . n A 1 192 GLY 192 349 349 GLY GLY A . n A 1 193 LYS 193 350 350 LYS LYS A . n A 1 194 LEU 194 351 351 LEU LEU A . n A 1 195 TYR 195 352 352 TYR TYR A . n A 1 196 SER 196 353 353 SER SER A . n A 1 197 LEU 197 354 354 LEU LEU A . n A 1 198 GLY 198 355 355 GLY GLY A . n A 1 199 LYS 199 356 356 LYS LYS A . n A 1 200 GLY 200 357 357 GLY GLY A . n A 1 201 ARG 201 358 358 ARG ARG A . n A 1 202 TRP 202 359 359 TRP TRP A . n A 1 203 MET 203 360 360 MET MET A . n A 1 204 LEU 204 361 361 LEU LEU A . n A 1 205 SER 205 362 362 SER SER A . n A 1 206 LEU 206 363 363 LEU LEU A . n A 1 207 THR 207 364 364 THR THR A . n A 1 208 LYS 208 365 365 LYS LYS A . n A 1 209 LYS 209 366 366 LYS LYS A . n A 1 210 MET 210 367 367 MET MET A . n A 1 211 GLU 211 368 368 GLU GLU A . n A 1 212 VAL 212 369 369 VAL VAL A . n A 1 213 LYS 213 370 370 LYS LYS A . n A 1 214 ALA 214 371 371 ALA ALA A . n A 1 215 ILE 215 372 372 ILE ILE A . n A 1 216 PHE 216 373 373 PHE PHE A . n A 1 217 THR 217 374 374 THR THR A . n A 1 218 GLY 218 375 375 GLY GLY A . n A 1 219 TYR 219 376 376 TYR TYR A . n A 1 220 TYR 220 377 377 TYR TYR A . n A 1 221 GLY 221 378 378 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OVE 1 1379 1379 OVE OVE A . C 3 GOL 1 1380 1380 GOL GOL A . D 4 1PE 1 1381 1381 1PE 1PE A . E 5 ACT 1 1382 1382 ACT ACT A . F 5 ACT 1 1383 1383 ACT ACT A . G 5 ACT 1 1384 1384 ACT ACT A . H 6 CL 1 1385 1385 CL CL A . I 5 ACT 1 1386 1386 ACT ACT A . J 7 HOH 1 2001 2001 HOH HOH A . J 7 HOH 2 2002 2002 HOH HOH A . J 7 HOH 3 2003 2003 HOH HOH A . J 7 HOH 4 2004 2004 HOH HOH A . J 7 HOH 5 2005 2005 HOH HOH A . J 7 HOH 6 2006 2006 HOH HOH A . J 7 HOH 7 2007 2007 HOH HOH A . J 7 HOH 8 2008 2008 HOH HOH A . J 7 HOH 9 2009 2009 HOH HOH A . J 7 HOH 10 2010 2010 HOH HOH A . J 7 HOH 11 2011 2011 HOH HOH A . J 7 HOH 12 2012 2012 HOH HOH A . J 7 HOH 13 2013 2013 HOH HOH A . J 7 HOH 14 2014 2014 HOH HOH A . J 7 HOH 15 2015 2015 HOH HOH A . J 7 HOH 16 2016 2016 HOH HOH A . J 7 HOH 17 2017 2017 HOH HOH A . J 7 HOH 18 2018 2018 HOH HOH A . J 7 HOH 19 2019 2019 HOH HOH A . J 7 HOH 20 2020 2020 HOH HOH A . J 7 HOH 21 2021 2021 HOH HOH A . J 7 HOH 22 2022 2022 HOH HOH A . J 7 HOH 23 2023 2023 HOH HOH A . J 7 HOH 24 2024 2024 HOH HOH A . J 7 HOH 25 2025 2025 HOH HOH A . J 7 HOH 26 2026 2026 HOH HOH A . J 7 HOH 27 2027 2027 HOH HOH A . J 7 HOH 28 2028 2028 HOH HOH A . J 7 HOH 29 2029 2029 HOH HOH A . J 7 HOH 30 2030 2030 HOH HOH A . J 7 HOH 31 2031 2031 HOH HOH A . J 7 HOH 32 2032 2032 HOH HOH A . J 7 HOH 33 2033 2033 HOH HOH A . J 7 HOH 34 2034 2034 HOH HOH A . J 7 HOH 35 2035 2035 HOH HOH A . J 7 HOH 36 2036 2036 HOH HOH A . J 7 HOH 37 2037 2037 HOH HOH A . J 7 HOH 38 2038 2038 HOH HOH A . J 7 HOH 39 2039 2039 HOH HOH A . J 7 HOH 40 2040 2040 HOH HOH A . J 7 HOH 41 2041 2041 HOH HOH A . J 7 HOH 42 2042 2042 HOH HOH A . J 7 HOH 43 2043 2043 HOH HOH A . J 7 HOH 44 2044 2044 HOH HOH A . J 7 HOH 45 2045 2045 HOH HOH A . J 7 HOH 46 2046 2046 HOH HOH A . J 7 HOH 47 2047 2047 HOH HOH A . J 7 HOH 48 2048 2048 HOH HOH A . J 7 HOH 49 2049 2049 HOH HOH A . J 7 HOH 50 2050 2050 HOH HOH A . J 7 HOH 51 2051 2051 HOH HOH A . J 7 HOH 52 2052 2052 HOH HOH A . J 7 HOH 53 2053 2053 HOH HOH A . J 7 HOH 54 2054 2054 HOH HOH A . J 7 HOH 55 2055 2055 HOH HOH A . J 7 HOH 56 2056 2056 HOH HOH A . J 7 HOH 57 2057 2057 HOH HOH A . J 7 HOH 58 2058 2058 HOH HOH A . J 7 HOH 59 2059 2059 HOH HOH A . J 7 HOH 60 2060 2060 HOH HOH A . J 7 HOH 61 2061 2061 HOH HOH A . J 7 HOH 62 2062 2062 HOH HOH A . J 7 HOH 63 2063 2063 HOH HOH A . J 7 HOH 64 2064 2064 HOH HOH A . J 7 HOH 65 2065 2065 HOH HOH A . J 7 HOH 66 2066 2066 HOH HOH A . J 7 HOH 67 2067 2067 HOH HOH A . J 7 HOH 68 2068 2068 HOH HOH A . J 7 HOH 69 2069 2069 HOH HOH A . J 7 HOH 70 2070 2070 HOH HOH A . J 7 HOH 71 2071 2071 HOH HOH A . J 7 HOH 72 2072 2072 HOH HOH A . J 7 HOH 73 2073 2073 HOH HOH A . J 7 HOH 74 2074 2074 HOH HOH A . J 7 HOH 75 2075 2075 HOH HOH A . J 7 HOH 76 2076 2076 HOH HOH A . J 7 HOH 77 2077 2077 HOH HOH A . J 7 HOH 78 2078 2078 HOH HOH A . J 7 HOH 79 2079 2079 HOH HOH A . J 7 HOH 80 2080 2080 HOH HOH A . J 7 HOH 81 2081 2081 HOH HOH A . J 7 HOH 82 2082 2082 HOH HOH A . J 7 HOH 83 2083 2083 HOH HOH A . J 7 HOH 84 2084 2084 HOH HOH A . J 7 HOH 85 2085 2085 HOH HOH A . J 7 HOH 86 2086 2086 HOH HOH A . J 7 HOH 87 2087 2087 HOH HOH A . J 7 HOH 88 2088 2088 HOH HOH A . J 7 HOH 89 2089 2089 HOH HOH A . J 7 HOH 90 2090 2090 HOH HOH A . J 7 HOH 91 2091 2091 HOH HOH A . J 7 HOH 92 2092 2092 HOH HOH A . J 7 HOH 93 2093 2093 HOH HOH A . J 7 HOH 94 2094 2094 HOH HOH A . J 7 HOH 95 2095 2095 HOH HOH A . J 7 HOH 96 2096 2096 HOH HOH A . J 7 HOH 97 2097 2097 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-10 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2013-11-13 4 'Structure model' 2 0 2019-05-15 5 'Structure model' 2 1 2019-07-10 6 'Structure model' 2 2 2019-07-17 7 'Structure model' 2 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 6 'Structure model' 'Data collection' 9 7 'Structure model' 'Data collection' 10 7 'Structure model' 'Database references' 11 7 'Structure model' 'Derived calculations' 12 7 'Structure model' Other 13 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' database_PDB_rev 3 4 'Structure model' database_PDB_rev_record 4 4 'Structure model' diffrn_source 5 4 'Structure model' exptl_crystal_grow 6 4 'Structure model' pdbx_database_proc 7 4 'Structure model' pdbx_database_status 8 5 'Structure model' diffrn_source 9 6 'Structure model' diffrn_source 10 7 'Structure model' chem_comp_atom 11 7 'Structure model' chem_comp_bond 12 7 'Structure model' database_2 13 7 'Structure model' pdbx_database_status 14 7 'Structure model' pdbx_initial_refinement_model 15 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_atom_id' 6 4 'Structure model' '_atom_site.label_atom_id' 7 4 'Structure model' '_atom_site.pdbx_auth_atom_name' 8 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 9 4 'Structure model' '_exptl_crystal_grow.temp' 10 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 11 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 12 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 13 7 'Structure model' '_database_2.pdbx_DOI' 14 7 'Structure model' '_database_2.pdbx_database_accession' 15 7 'Structure model' '_pdbx_database_status.status_code_sf' 16 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 43.6093 13.4895 80.2491 0.2841 0.2251 0.2564 0.0265 -0.1114 -0.0248 3.2792 1.2273 6.2814 0.6493 2.1526 -0.5920 0.0605 -0.4499 -0.1817 0.2775 0.0524 -0.6072 0.3890 0.5683 -0.1224 'X-RAY DIFFRACTION' 2 ? refined 22.7786 9.2279 64.4478 0.2314 0.2976 0.2744 0.0146 -0.0072 0.0034 4.6084 6.3072 3.6887 4.9380 3.8246 4.1839 -0.0450 -0.2346 0.2291 -0.7098 -0.1901 -0.0369 -0.4956 -0.2874 0.2826 'X-RAY DIFFRACTION' 3 ? refined 21.1044 -8.3727 57.4161 0.2939 0.3568 0.2805 -0.0549 0.0170 0.0358 1.5315 5.1939 6.0390 -0.3788 0.6411 5.0390 -0.2235 -0.1395 -0.2678 0.8608 -0.0970 0.7611 0.9510 -0.6508 0.1853 'X-RAY DIFFRACTION' 4 ? refined 40.9203 7.5593 75.7989 0.2102 0.1904 0.1863 0.0340 0.0481 -0.0076 1.6566 4.6631 2.5618 1.3509 0.6956 1.2382 -0.2441 -0.1775 -0.1909 0.3287 0.0568 -0.1545 0.1609 -0.0976 0.0914 'X-RAY DIFFRACTION' 5 ? refined 43.4684 11.8375 64.8976 0.2108 0.2440 0.1947 -0.0309 0.0397 0.0055 1.5984 2.9605 2.9639 0.9813 0.6176 1.6064 -0.0712 0.1239 -0.0770 -0.2261 0.1455 -0.3135 -0.2601 0.3570 -0.1186 'X-RAY DIFFRACTION' 6 ? refined 37.5669 -0.1414 63.9483 0.1531 0.2079 0.2003 -0.0081 -0.0203 0.0127 5.6100 6.9101 5.4789 0.0342 -2.9713 -1.2572 -0.2404 0.0008 -0.2148 -0.1338 -0.0324 -0.4525 0.5388 0.2088 0.3041 'X-RAY DIFFRACTION' 7 ? refined 31.4574 7.1804 56.8875 0.2038 0.2927 0.1616 0.0231 0.0265 0.0344 1.0407 2.8582 2.8814 0.0456 0.3288 1.0021 -0.1259 0.1572 0.0828 -0.6239 0.2019 0.1202 -0.3437 0.0478 -0.0761 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 161 THROUGH 174 )' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 175 THROUGH 194 )' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 195 THROUGH 220 )' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 221 THROUGH 248 )' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 249 THROUGH 308 )' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 309 THROUGH 335 )' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 336 THROUGH 378 )' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2YOZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;N-TERMINAL GLYCINE REMAINS FROM TEV-CLEAVAGE OF EXPRESSION TAG. RESIDUE NUMBERING IS ACCORDING TO CNPASE ISOFORM 1 ( P16330-2). ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2065 ? ? O A HOH 2066 ? ? 2.14 2 1 O A HOH 2063 ? ? O A HOH 2077 ? ? 2.17 3 1 O A HOH 2005 ? ? O A HOH 2006 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 221 ? ? -92.97 59.07 2 1 THR A 233 ? ? -96.52 -82.55 3 1 VAL A 321 ? ? 97.24 -18.43 4 1 THR A 374 ? ? -163.70 -167.60 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 1PE 1381 ? C14 ? D 1PE 1 C14 2 1 N 1 A 1PE 1381 ? C24 ? D 1PE 1 C24 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 158 ? A GLY 1 2 1 Y 1 A GLY 159 ? A GLY 2 3 1 Y 1 A LEU 160 ? A LEU 3 4 1 Y 1 A ILE 206 ? A ILE 49 5 1 Y 1 A SER 207 ? A SER 50 6 1 Y 1 A GLY 208 ? A GLY 51 7 1 Y 1 A ASP 209 ? A ASP 52 8 1 Y 1 A GLU 210 ? A GLU 53 9 1 Y 1 A PRO 211 ? A PRO 54 10 1 Y 1 A LYS 212 ? A LYS 55 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1PE OH2 O N N 1 1PE C12 C N N 2 1PE C22 C N N 3 1PE OH3 O N N 4 1PE C13 C N N 5 1PE C23 C N N 6 1PE OH4 O N N 7 1PE C14 C N N 8 1PE C24 C N N 9 1PE OH5 O N N 10 1PE C15 C N N 11 1PE C25 C N N 12 1PE OH6 O N N 13 1PE C16 C N N 14 1PE C26 C N N 15 1PE OH7 O N N 16 1PE HO2 H N N 17 1PE H121 H N N 18 1PE H122 H N N 19 1PE H221 H N N 20 1PE H222 H N N 21 1PE H131 H N N 22 1PE H132 H N N 23 1PE H231 H N N 24 1PE H232 H N N 25 1PE H141 H N N 26 1PE H142 H N N 27 1PE H241 H N N 28 1PE H242 H N N 29 1PE H151 H N N 30 1PE H152 H N N 31 1PE H251 H N N 32 1PE H252 H N N 33 1PE H161 H N N 34 1PE H162 H N N 35 1PE H261 H N N 36 1PE H262 H N N 37 1PE HO7 H N N 38 ACT C C N N 39 ACT O O N N 40 ACT OXT O N N 41 ACT CH3 C N N 42 ACT H1 H N N 43 ACT H2 H N N 44 ACT H3 H N N 45 ALA N N N N 46 ALA CA C N S 47 ALA C C N N 48 ALA O O N N 49 ALA CB C N N 50 ALA OXT O N N 51 ALA H H N N 52 ALA H2 H N N 53 ALA HA H N N 54 ALA HB1 H N N 55 ALA HB2 H N N 56 ALA HB3 H N N 57 ALA HXT H N N 58 ARG N N N N 59 ARG CA C N S 60 ARG C C N N 61 ARG O O N N 62 ARG CB C N N 63 ARG CG C N N 64 ARG CD C N N 65 ARG NE N N N 66 ARG CZ C N N 67 ARG NH1 N N N 68 ARG NH2 N N N 69 ARG OXT O N N 70 ARG H H N N 71 ARG H2 H N N 72 ARG HA H N N 73 ARG HB2 H N N 74 ARG HB3 H N N 75 ARG HG2 H N N 76 ARG HG3 H N N 77 ARG HD2 H N N 78 ARG HD3 H N N 79 ARG HE H N N 80 ARG HH11 H N N 81 ARG HH12 H N N 82 ARG HH21 H N N 83 ARG HH22 H N N 84 ARG HXT H N N 85 ASN N N N N 86 ASN CA C N S 87 ASN C C N N 88 ASN O O N N 89 ASN CB C N N 90 ASN CG C N N 91 ASN OD1 O N N 92 ASN ND2 N N N 93 ASN OXT O N N 94 ASN H H N N 95 ASN H2 H N N 96 ASN HA H N N 97 ASN HB2 H N N 98 ASN HB3 H N N 99 ASN HD21 H N N 100 ASN HD22 H N N 101 ASN HXT H N N 102 ASP N N N N 103 ASP CA C N S 104 ASP C C N N 105 ASP O O N N 106 ASP CB C N N 107 ASP CG C N N 108 ASP OD1 O N N 109 ASP OD2 O N N 110 ASP OXT O N N 111 ASP H H N N 112 ASP H2 H N N 113 ASP HA H N N 114 ASP HB2 H N N 115 ASP HB3 H N N 116 ASP HD2 H N N 117 ASP HXT H N N 118 CL CL CL N N 119 CYS N N N N 120 CYS CA C N R 121 CYS C C N N 122 CYS O O N N 123 CYS CB C N N 124 CYS SG S N N 125 CYS OXT O N N 126 CYS H H N N 127 CYS H2 H N N 128 CYS HA H N N 129 CYS HB2 H N N 130 CYS HB3 H N N 131 CYS HG H N N 132 CYS HXT H N N 133 GLN N N N N 134 GLN CA C N S 135 GLN C C N N 136 GLN O O N N 137 GLN CB C N N 138 GLN CG C N N 139 GLN CD C N N 140 GLN OE1 O N N 141 GLN NE2 N N N 142 GLN OXT O N N 143 GLN H H N N 144 GLN H2 H N N 145 GLN HA H N N 146 GLN HB2 H N N 147 GLN HB3 H N N 148 GLN HG2 H N N 149 GLN HG3 H N N 150 GLN HE21 H N N 151 GLN HE22 H N N 152 GLN HXT H N N 153 GLU N N N N 154 GLU CA C N S 155 GLU C C N N 156 GLU O O N N 157 GLU CB C N N 158 GLU CG C N N 159 GLU CD C N N 160 GLU OE1 O N N 161 GLU OE2 O N N 162 GLU OXT O N N 163 GLU H H N N 164 GLU H2 H N N 165 GLU HA H N N 166 GLU HB2 H N N 167 GLU HB3 H N N 168 GLU HG2 H N N 169 GLU HG3 H N N 170 GLU HE2 H N N 171 GLU HXT H N N 172 GLY N N N N 173 GLY CA C N N 174 GLY C C N N 175 GLY O O N N 176 GLY OXT O N N 177 GLY H H N N 178 GLY H2 H N N 179 GLY HA2 H N N 180 GLY HA3 H N N 181 GLY HXT H N N 182 GOL C1 C N N 183 GOL O1 O N N 184 GOL C2 C N N 185 GOL O2 O N N 186 GOL C3 C N N 187 GOL O3 O N N 188 GOL H11 H N N 189 GOL H12 H N N 190 GOL HO1 H N N 191 GOL H2 H N N 192 GOL HO2 H N N 193 GOL H31 H N N 194 GOL H32 H N N 195 GOL HO3 H N N 196 HIS N N N N 197 HIS CA C N S 198 HIS C C N N 199 HIS O O N N 200 HIS CB C N N 201 HIS CG C Y N 202 HIS ND1 N Y N 203 HIS CD2 C Y N 204 HIS CE1 C Y N 205 HIS NE2 N Y N 206 HIS OXT O N N 207 HIS H H N N 208 HIS H2 H N N 209 HIS HA H N N 210 HIS HB2 H N N 211 HIS HB3 H N N 212 HIS HD1 H N N 213 HIS HD2 H N N 214 HIS HE1 H N N 215 HIS HE2 H N N 216 HIS HXT H N N 217 HOH O O N N 218 HOH H1 H N N 219 HOH H2 H N N 220 ILE N N N N 221 ILE CA C N S 222 ILE C C N N 223 ILE O O N N 224 ILE CB C N S 225 ILE CG1 C N N 226 ILE CG2 C N N 227 ILE CD1 C N N 228 ILE OXT O N N 229 ILE H H N N 230 ILE H2 H N N 231 ILE HA H N N 232 ILE HB H N N 233 ILE HG12 H N N 234 ILE HG13 H N N 235 ILE HG21 H N N 236 ILE HG22 H N N 237 ILE HG23 H N N 238 ILE HD11 H N N 239 ILE HD12 H N N 240 ILE HD13 H N N 241 ILE HXT H N N 242 LEU N N N N 243 LEU CA C N S 244 LEU C C N N 245 LEU O O N N 246 LEU CB C N N 247 LEU CG C N N 248 LEU CD1 C N N 249 LEU CD2 C N N 250 LEU OXT O N N 251 LEU H H N N 252 LEU H2 H N N 253 LEU HA H N N 254 LEU HB2 H N N 255 LEU HB3 H N N 256 LEU HG H N N 257 LEU HD11 H N N 258 LEU HD12 H N N 259 LEU HD13 H N N 260 LEU HD21 H N N 261 LEU HD22 H N N 262 LEU HD23 H N N 263 LEU HXT H N N 264 LYS N N N N 265 LYS CA C N S 266 LYS C C N N 267 LYS O O N N 268 LYS CB C N N 269 LYS CG C N N 270 LYS CD C N N 271 LYS CE C N N 272 LYS NZ N N N 273 LYS OXT O N N 274 LYS H H N N 275 LYS H2 H N N 276 LYS HA H N N 277 LYS HB2 H N N 278 LYS HB3 H N N 279 LYS HG2 H N N 280 LYS HG3 H N N 281 LYS HD2 H N N 282 LYS HD3 H N N 283 LYS HE2 H N N 284 LYS HE3 H N N 285 LYS HZ1 H N N 286 LYS HZ2 H N N 287 LYS HZ3 H N N 288 LYS HXT H N N 289 MET N N N N 290 MET CA C N S 291 MET C C N N 292 MET O O N N 293 MET CB C N N 294 MET CG C N N 295 MET SD S N N 296 MET CE C N N 297 MET OXT O N N 298 MET H H N N 299 MET H2 H N N 300 MET HA H N N 301 MET HB2 H N N 302 MET HB3 H N N 303 MET HG2 H N N 304 MET HG3 H N N 305 MET HE1 H N N 306 MET HE2 H N N 307 MET HE3 H N N 308 MET HXT H N N 309 OVE O1P O N N 310 OVE P P N N 311 OVE S2P S N N 312 OVE O3P O N N 313 OVE "O2'" O N N 314 OVE "C2'" C N R 315 OVE "C3'" C N R 316 OVE "O3'" O N N 317 OVE "C1'" C N R 318 OVE "O4'" O N N 319 OVE "C4'" C N R 320 OVE "C5'" C N N 321 OVE "O5'" O N N 322 OVE N9 N Y N 323 OVE C8 C Y N 324 OVE N7 N Y N 325 OVE C5 C Y N 326 OVE C6 C Y N 327 OVE N6 N N N 328 OVE C4 C Y N 329 OVE N3 N Y N 330 OVE C2 C Y N 331 OVE N1 N Y N 332 OVE H1P H N N 333 OVE H2P H N N 334 OVE "H2'" H N N 335 OVE "H3'" H N N 336 OVE "H1'" H N N 337 OVE HA H N N 338 OVE "H4'" H N N 339 OVE "H5'1" H N N 340 OVE "H5'2" H N N 341 OVE "H5'" H N N 342 OVE H2 H N N 343 OVE H8 H N N 344 OVE H61N H N N 345 OVE H62N H N N 346 PHE N N N N 347 PHE CA C N S 348 PHE C C N N 349 PHE O O N N 350 PHE CB C N N 351 PHE CG C Y N 352 PHE CD1 C Y N 353 PHE CD2 C Y N 354 PHE CE1 C Y N 355 PHE CE2 C Y N 356 PHE CZ C Y N 357 PHE OXT O N N 358 PHE H H N N 359 PHE H2 H N N 360 PHE HA H N N 361 PHE HB2 H N N 362 PHE HB3 H N N 363 PHE HD1 H N N 364 PHE HD2 H N N 365 PHE HE1 H N N 366 PHE HE2 H N N 367 PHE HZ H N N 368 PHE HXT H N N 369 PRO N N N N 370 PRO CA C N S 371 PRO C C N N 372 PRO O O N N 373 PRO CB C N N 374 PRO CG C N N 375 PRO CD C N N 376 PRO OXT O N N 377 PRO H H N N 378 PRO HA H N N 379 PRO HB2 H N N 380 PRO HB3 H N N 381 PRO HG2 H N N 382 PRO HG3 H N N 383 PRO HD2 H N N 384 PRO HD3 H N N 385 PRO HXT H N N 386 SER N N N N 387 SER CA C N S 388 SER C C N N 389 SER O O N N 390 SER CB C N N 391 SER OG O N N 392 SER OXT O N N 393 SER H H N N 394 SER H2 H N N 395 SER HA H N N 396 SER HB2 H N N 397 SER HB3 H N N 398 SER HG H N N 399 SER HXT H N N 400 THR N N N N 401 THR CA C N S 402 THR C C N N 403 THR O O N N 404 THR CB C N R 405 THR OG1 O N N 406 THR CG2 C N N 407 THR OXT O N N 408 THR H H N N 409 THR H2 H N N 410 THR HA H N N 411 THR HB H N N 412 THR HG1 H N N 413 THR HG21 H N N 414 THR HG22 H N N 415 THR HG23 H N N 416 THR HXT H N N 417 TRP N N N N 418 TRP CA C N S 419 TRP C C N N 420 TRP O O N N 421 TRP CB C N N 422 TRP CG C Y N 423 TRP CD1 C Y N 424 TRP CD2 C Y N 425 TRP NE1 N Y N 426 TRP CE2 C Y N 427 TRP CE3 C Y N 428 TRP CZ2 C Y N 429 TRP CZ3 C Y N 430 TRP CH2 C Y N 431 TRP OXT O N N 432 TRP H H N N 433 TRP H2 H N N 434 TRP HA H N N 435 TRP HB2 H N N 436 TRP HB3 H N N 437 TRP HD1 H N N 438 TRP HE1 H N N 439 TRP HE3 H N N 440 TRP HZ2 H N N 441 TRP HZ3 H N N 442 TRP HH2 H N N 443 TRP HXT H N N 444 TYR N N N N 445 TYR CA C N S 446 TYR C C N N 447 TYR O O N N 448 TYR CB C N N 449 TYR CG C Y N 450 TYR CD1 C Y N 451 TYR CD2 C Y N 452 TYR CE1 C Y N 453 TYR CE2 C Y N 454 TYR CZ C Y N 455 TYR OH O N N 456 TYR OXT O N N 457 TYR H H N N 458 TYR H2 H N N 459 TYR HA H N N 460 TYR HB2 H N N 461 TYR HB3 H N N 462 TYR HD1 H N N 463 TYR HD2 H N N 464 TYR HE1 H N N 465 TYR HE2 H N N 466 TYR HH H N N 467 TYR HXT H N N 468 VAL N N N N 469 VAL CA C N S 470 VAL C C N N 471 VAL O O N N 472 VAL CB C N N 473 VAL CG1 C N N 474 VAL CG2 C N N 475 VAL OXT O N N 476 VAL H H N N 477 VAL H2 H N N 478 VAL HA H N N 479 VAL HB H N N 480 VAL HG11 H N N 481 VAL HG12 H N N 482 VAL HG13 H N N 483 VAL HG21 H N N 484 VAL HG22 H N N 485 VAL HG23 H N N 486 VAL HXT H N N 487 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1PE OH2 C12 sing N N 1 1PE OH2 HO2 sing N N 2 1PE C12 C22 sing N N 3 1PE C12 H121 sing N N 4 1PE C12 H122 sing N N 5 1PE C22 OH3 sing N N 6 1PE C22 H221 sing N N 7 1PE C22 H222 sing N N 8 1PE OH3 C23 sing N N 9 1PE C13 C23 sing N N 10 1PE C13 OH4 sing N N 11 1PE C13 H131 sing N N 12 1PE C13 H132 sing N N 13 1PE C23 H231 sing N N 14 1PE C23 H232 sing N N 15 1PE OH4 C24 sing N N 16 1PE C14 C24 sing N N 17 1PE C14 OH5 sing N N 18 1PE C14 H141 sing N N 19 1PE C14 H142 sing N N 20 1PE C24 H241 sing N N 21 1PE C24 H242 sing N N 22 1PE OH5 C25 sing N N 23 1PE C15 C25 sing N N 24 1PE C15 OH6 sing N N 25 1PE C15 H151 sing N N 26 1PE C15 H152 sing N N 27 1PE C25 H251 sing N N 28 1PE C25 H252 sing N N 29 1PE OH6 C26 sing N N 30 1PE C16 C26 sing N N 31 1PE C16 OH7 sing N N 32 1PE C16 H161 sing N N 33 1PE C16 H162 sing N N 34 1PE C26 H261 sing N N 35 1PE C26 H262 sing N N 36 1PE OH7 HO7 sing N N 37 ACT C O doub N N 38 ACT C OXT sing N N 39 ACT C CH3 sing N N 40 ACT CH3 H1 sing N N 41 ACT CH3 H2 sing N N 42 ACT CH3 H3 sing N N 43 ALA N CA sing N N 44 ALA N H sing N N 45 ALA N H2 sing N N 46 ALA CA C sing N N 47 ALA CA CB sing N N 48 ALA CA HA sing N N 49 ALA C O doub N N 50 ALA C OXT sing N N 51 ALA CB HB1 sing N N 52 ALA CB HB2 sing N N 53 ALA CB HB3 sing N N 54 ALA OXT HXT sing N N 55 ARG N CA sing N N 56 ARG N H sing N N 57 ARG N H2 sing N N 58 ARG CA C sing N N 59 ARG CA CB sing N N 60 ARG CA HA sing N N 61 ARG C O doub N N 62 ARG C OXT sing N N 63 ARG CB CG sing N N 64 ARG CB HB2 sing N N 65 ARG CB HB3 sing N N 66 ARG CG CD sing N N 67 ARG CG HG2 sing N N 68 ARG CG HG3 sing N N 69 ARG CD NE sing N N 70 ARG CD HD2 sing N N 71 ARG CD HD3 sing N N 72 ARG NE CZ sing N N 73 ARG NE HE sing N N 74 ARG CZ NH1 sing N N 75 ARG CZ NH2 doub N N 76 ARG NH1 HH11 sing N N 77 ARG NH1 HH12 sing N N 78 ARG NH2 HH21 sing N N 79 ARG NH2 HH22 sing N N 80 ARG OXT HXT sing N N 81 ASN N CA sing N N 82 ASN N H sing N N 83 ASN N H2 sing N N 84 ASN CA C sing N N 85 ASN CA CB sing N N 86 ASN CA HA sing N N 87 ASN C O doub N N 88 ASN C OXT sing N N 89 ASN CB CG sing N N 90 ASN CB HB2 sing N N 91 ASN CB HB3 sing N N 92 ASN CG OD1 doub N N 93 ASN CG ND2 sing N N 94 ASN ND2 HD21 sing N N 95 ASN ND2 HD22 sing N N 96 ASN OXT HXT sing N N 97 ASP N CA sing N N 98 ASP N H sing N N 99 ASP N H2 sing N N 100 ASP CA C sing N N 101 ASP CA CB sing N N 102 ASP CA HA sing N N 103 ASP C O doub N N 104 ASP C OXT sing N N 105 ASP CB CG sing N N 106 ASP CB HB2 sing N N 107 ASP CB HB3 sing N N 108 ASP CG OD1 doub N N 109 ASP CG OD2 sing N N 110 ASP OD2 HD2 sing N N 111 ASP OXT HXT sing N N 112 CYS N CA sing N N 113 CYS N H sing N N 114 CYS N H2 sing N N 115 CYS CA C sing N N 116 CYS CA CB sing N N 117 CYS CA HA sing N N 118 CYS C O doub N N 119 CYS C OXT sing N N 120 CYS CB SG sing N N 121 CYS CB HB2 sing N N 122 CYS CB HB3 sing N N 123 CYS SG HG sing N N 124 CYS OXT HXT sing N N 125 GLN N CA sing N N 126 GLN N H sing N N 127 GLN N H2 sing N N 128 GLN CA C sing N N 129 GLN CA CB sing N N 130 GLN CA HA sing N N 131 GLN C O doub N N 132 GLN C OXT sing N N 133 GLN CB CG sing N N 134 GLN CB HB2 sing N N 135 GLN CB HB3 sing N N 136 GLN CG CD sing N N 137 GLN CG HG2 sing N N 138 GLN CG HG3 sing N N 139 GLN CD OE1 doub N N 140 GLN CD NE2 sing N N 141 GLN NE2 HE21 sing N N 142 GLN NE2 HE22 sing N N 143 GLN OXT HXT sing N N 144 GLU N CA sing N N 145 GLU N H sing N N 146 GLU N H2 sing N N 147 GLU CA C sing N N 148 GLU CA CB sing N N 149 GLU CA HA sing N N 150 GLU C O doub N N 151 GLU C OXT sing N N 152 GLU CB CG sing N N 153 GLU CB HB2 sing N N 154 GLU CB HB3 sing N N 155 GLU CG CD sing N N 156 GLU CG HG2 sing N N 157 GLU CG HG3 sing N N 158 GLU CD OE1 doub N N 159 GLU CD OE2 sing N N 160 GLU OE2 HE2 sing N N 161 GLU OXT HXT sing N N 162 GLY N CA sing N N 163 GLY N H sing N N 164 GLY N H2 sing N N 165 GLY CA C sing N N 166 GLY CA HA2 sing N N 167 GLY CA HA3 sing N N 168 GLY C O doub N N 169 GLY C OXT sing N N 170 GLY OXT HXT sing N N 171 GOL C1 O1 sing N N 172 GOL C1 C2 sing N N 173 GOL C1 H11 sing N N 174 GOL C1 H12 sing N N 175 GOL O1 HO1 sing N N 176 GOL C2 O2 sing N N 177 GOL C2 C3 sing N N 178 GOL C2 H2 sing N N 179 GOL O2 HO2 sing N N 180 GOL C3 O3 sing N N 181 GOL C3 H31 sing N N 182 GOL C3 H32 sing N N 183 GOL O3 HO3 sing N N 184 HIS N CA sing N N 185 HIS N H sing N N 186 HIS N H2 sing N N 187 HIS CA C sing N N 188 HIS CA CB sing N N 189 HIS CA HA sing N N 190 HIS C O doub N N 191 HIS C OXT sing N N 192 HIS CB CG sing N N 193 HIS CB HB2 sing N N 194 HIS CB HB3 sing N N 195 HIS CG ND1 sing Y N 196 HIS CG CD2 doub Y N 197 HIS ND1 CE1 doub Y N 198 HIS ND1 HD1 sing N N 199 HIS CD2 NE2 sing Y N 200 HIS CD2 HD2 sing N N 201 HIS CE1 NE2 sing Y N 202 HIS CE1 HE1 sing N N 203 HIS NE2 HE2 sing N N 204 HIS OXT HXT sing N N 205 HOH O H1 sing N N 206 HOH O H2 sing N N 207 ILE N CA sing N N 208 ILE N H sing N N 209 ILE N H2 sing N N 210 ILE CA C sing N N 211 ILE CA CB sing N N 212 ILE CA HA sing N N 213 ILE C O doub N N 214 ILE C OXT sing N N 215 ILE CB CG1 sing N N 216 ILE CB CG2 sing N N 217 ILE CB HB sing N N 218 ILE CG1 CD1 sing N N 219 ILE CG1 HG12 sing N N 220 ILE CG1 HG13 sing N N 221 ILE CG2 HG21 sing N N 222 ILE CG2 HG22 sing N N 223 ILE CG2 HG23 sing N N 224 ILE CD1 HD11 sing N N 225 ILE CD1 HD12 sing N N 226 ILE CD1 HD13 sing N N 227 ILE OXT HXT sing N N 228 LEU N CA sing N N 229 LEU N H sing N N 230 LEU N H2 sing N N 231 LEU CA C sing N N 232 LEU CA CB sing N N 233 LEU CA HA sing N N 234 LEU C O doub N N 235 LEU C OXT sing N N 236 LEU CB CG sing N N 237 LEU CB HB2 sing N N 238 LEU CB HB3 sing N N 239 LEU CG CD1 sing N N 240 LEU CG CD2 sing N N 241 LEU CG HG sing N N 242 LEU CD1 HD11 sing N N 243 LEU CD1 HD12 sing N N 244 LEU CD1 HD13 sing N N 245 LEU CD2 HD21 sing N N 246 LEU CD2 HD22 sing N N 247 LEU CD2 HD23 sing N N 248 LEU OXT HXT sing N N 249 LYS N CA sing N N 250 LYS N H sing N N 251 LYS N H2 sing N N 252 LYS CA C sing N N 253 LYS CA CB sing N N 254 LYS CA HA sing N N 255 LYS C O doub N N 256 LYS C OXT sing N N 257 LYS CB CG sing N N 258 LYS CB HB2 sing N N 259 LYS CB HB3 sing N N 260 LYS CG CD sing N N 261 LYS CG HG2 sing N N 262 LYS CG HG3 sing N N 263 LYS CD CE sing N N 264 LYS CD HD2 sing N N 265 LYS CD HD3 sing N N 266 LYS CE NZ sing N N 267 LYS CE HE2 sing N N 268 LYS CE HE3 sing N N 269 LYS NZ HZ1 sing N N 270 LYS NZ HZ2 sing N N 271 LYS NZ HZ3 sing N N 272 LYS OXT HXT sing N N 273 MET N CA sing N N 274 MET N H sing N N 275 MET N H2 sing N N 276 MET CA C sing N N 277 MET CA CB sing N N 278 MET CA HA sing N N 279 MET C O doub N N 280 MET C OXT sing N N 281 MET CB CG sing N N 282 MET CB HB2 sing N N 283 MET CB HB3 sing N N 284 MET CG SD sing N N 285 MET CG HG2 sing N N 286 MET CG HG3 sing N N 287 MET SD CE sing N N 288 MET CE HE1 sing N N 289 MET CE HE2 sing N N 290 MET CE HE3 sing N N 291 MET OXT HXT sing N N 292 OVE O1P P sing N N 293 OVE P S2P sing N N 294 OVE P O3P doub N N 295 OVE P "O2'" sing N N 296 OVE "O2'" "C2'" sing N N 297 OVE "C2'" "C3'" sing N N 298 OVE "C2'" "C1'" sing N N 299 OVE "C3'" "O3'" sing N N 300 OVE "C3'" "C4'" sing N N 301 OVE "C1'" "O4'" sing N N 302 OVE "C1'" N9 sing N N 303 OVE "O4'" "C4'" sing N N 304 OVE "C4'" "C5'" sing N N 305 OVE "C5'" "O5'" sing N N 306 OVE N9 C8 sing Y N 307 OVE N9 C4 sing Y N 308 OVE C8 N7 doub Y N 309 OVE N7 C5 sing Y N 310 OVE C5 C6 doub Y N 311 OVE C5 C4 sing Y N 312 OVE C6 N6 sing N N 313 OVE C6 N1 sing Y N 314 OVE C4 N3 doub Y N 315 OVE N3 C2 sing Y N 316 OVE H2 C2 sing N N 317 OVE N1 C2 doub Y N 318 OVE O1P H1P sing N N 319 OVE S2P H2P sing N N 320 OVE "C2'" "H2'" sing N N 321 OVE "C3'" "H3'" sing N N 322 OVE "C1'" "H1'" sing N N 323 OVE "O3'" HA sing N N 324 OVE "C4'" "H4'" sing N N 325 OVE "C5'" "H5'1" sing N N 326 OVE "C5'" "H5'2" sing N N 327 OVE "O5'" "H5'" sing N N 328 OVE C8 H8 sing N N 329 OVE N6 H61N sing N N 330 OVE N6 H62N sing N N 331 PHE N CA sing N N 332 PHE N H sing N N 333 PHE N H2 sing N N 334 PHE CA C sing N N 335 PHE CA CB sing N N 336 PHE CA HA sing N N 337 PHE C O doub N N 338 PHE C OXT sing N N 339 PHE CB CG sing N N 340 PHE CB HB2 sing N N 341 PHE CB HB3 sing N N 342 PHE CG CD1 doub Y N 343 PHE CG CD2 sing Y N 344 PHE CD1 CE1 sing Y N 345 PHE CD1 HD1 sing N N 346 PHE CD2 CE2 doub Y N 347 PHE CD2 HD2 sing N N 348 PHE CE1 CZ doub Y N 349 PHE CE1 HE1 sing N N 350 PHE CE2 CZ sing Y N 351 PHE CE2 HE2 sing N N 352 PHE CZ HZ sing N N 353 PHE OXT HXT sing N N 354 PRO N CA sing N N 355 PRO N CD sing N N 356 PRO N H sing N N 357 PRO CA C sing N N 358 PRO CA CB sing N N 359 PRO CA HA sing N N 360 PRO C O doub N N 361 PRO C OXT sing N N 362 PRO CB CG sing N N 363 PRO CB HB2 sing N N 364 PRO CB HB3 sing N N 365 PRO CG CD sing N N 366 PRO CG HG2 sing N N 367 PRO CG HG3 sing N N 368 PRO CD HD2 sing N N 369 PRO CD HD3 sing N N 370 PRO OXT HXT sing N N 371 SER N CA sing N N 372 SER N H sing N N 373 SER N H2 sing N N 374 SER CA C sing N N 375 SER CA CB sing N N 376 SER CA HA sing N N 377 SER C O doub N N 378 SER C OXT sing N N 379 SER CB OG sing N N 380 SER CB HB2 sing N N 381 SER CB HB3 sing N N 382 SER OG HG sing N N 383 SER OXT HXT sing N N 384 THR N CA sing N N 385 THR N H sing N N 386 THR N H2 sing N N 387 THR CA C sing N N 388 THR CA CB sing N N 389 THR CA HA sing N N 390 THR C O doub N N 391 THR C OXT sing N N 392 THR CB OG1 sing N N 393 THR CB CG2 sing N N 394 THR CB HB sing N N 395 THR OG1 HG1 sing N N 396 THR CG2 HG21 sing N N 397 THR CG2 HG22 sing N N 398 THR CG2 HG23 sing N N 399 THR OXT HXT sing N N 400 TRP N CA sing N N 401 TRP N H sing N N 402 TRP N H2 sing N N 403 TRP CA C sing N N 404 TRP CA CB sing N N 405 TRP CA HA sing N N 406 TRP C O doub N N 407 TRP C OXT sing N N 408 TRP CB CG sing N N 409 TRP CB HB2 sing N N 410 TRP CB HB3 sing N N 411 TRP CG CD1 doub Y N 412 TRP CG CD2 sing Y N 413 TRP CD1 NE1 sing Y N 414 TRP CD1 HD1 sing N N 415 TRP CD2 CE2 doub Y N 416 TRP CD2 CE3 sing Y N 417 TRP NE1 CE2 sing Y N 418 TRP NE1 HE1 sing N N 419 TRP CE2 CZ2 sing Y N 420 TRP CE3 CZ3 doub Y N 421 TRP CE3 HE3 sing N N 422 TRP CZ2 CH2 doub Y N 423 TRP CZ2 HZ2 sing N N 424 TRP CZ3 CH2 sing Y N 425 TRP CZ3 HZ3 sing N N 426 TRP CH2 HH2 sing N N 427 TRP OXT HXT sing N N 428 TYR N CA sing N N 429 TYR N H sing N N 430 TYR N H2 sing N N 431 TYR CA C sing N N 432 TYR CA CB sing N N 433 TYR CA HA sing N N 434 TYR C O doub N N 435 TYR C OXT sing N N 436 TYR CB CG sing N N 437 TYR CB HB2 sing N N 438 TYR CB HB3 sing N N 439 TYR CG CD1 doub Y N 440 TYR CG CD2 sing Y N 441 TYR CD1 CE1 sing Y N 442 TYR CD1 HD1 sing N N 443 TYR CD2 CE2 doub Y N 444 TYR CD2 HD2 sing N N 445 TYR CE1 CZ doub Y N 446 TYR CE1 HE1 sing N N 447 TYR CE2 CZ sing Y N 448 TYR CE2 HE2 sing N N 449 TYR CZ OH sing N N 450 TYR OH HH sing N N 451 TYR OXT HXT sing N N 452 VAL N CA sing N N 453 VAL N H sing N N 454 VAL N H2 sing N N 455 VAL CA C sing N N 456 VAL CA CB sing N N 457 VAL CA HA sing N N 458 VAL C O doub N N 459 VAL C OXT sing N N 460 VAL CB CG1 sing N N 461 VAL CB CG2 sing N N 462 VAL CB HB sing N N 463 VAL CG1 HG11 sing N N 464 VAL CG1 HG12 sing N N 465 VAL CG1 HG13 sing N N 466 VAL CG2 HG21 sing N N 467 VAL CG2 HG22 sing N N 468 VAL CG2 HG23 sing N N 469 VAL OXT HXT sing N N 470 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-O-(sulfidophosphinato)adenosine" OVE 3 GLYCEROL GOL 4 'PENTAETHYLENE GLYCOL' 1PE 5 'ACETATE ION' ACT 6 'CHLORIDE ION' CL 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2XMI _pdbx_initial_refinement_model.details 'PDB ENTRY 2XMI' #