data_2YQE # _entry.id 2YQE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YQE pdb_00002yqe 10.2210/pdb2yqe/pdb RCSB RCSB027002 ? ? WWPDB D_1000027002 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001234.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YQE _pdbx_database_status.recvd_initial_deposition_date 2007-03-30 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tanabe, W.' 1 'Suzuki, S.' 2 'Muto, Y.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Terada, T.' 6 'Shirouzu, M.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of the ARID domain of JARID1D protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tanabe, W.' 1 ? primary 'Suzuki, S.' 2 ? primary 'Muto, Y.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Terada, T.' 6 ? primary 'Shirouzu, M.' 7 ? primary 'Yokoyama, S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Jumonji/ARID domain-containing protein 1D' _entity.formula_weight 11466.117 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'ARID domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein SmcY, Histocompatibility Y antigen, H-Y' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGS LLRSHYERIIYPYEMFQSGA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGS LLRSHYERIIYPYEMFQSGA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001234.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 THR n 1 9 ARG n 1 10 VAL n 1 11 LYS n 1 12 LEU n 1 13 ASN n 1 14 TYR n 1 15 LEU n 1 16 ASP n 1 17 GLN n 1 18 ILE n 1 19 ALA n 1 20 LYS n 1 21 PHE n 1 22 TRP n 1 23 GLU n 1 24 ILE n 1 25 GLN n 1 26 GLY n 1 27 SER n 1 28 SER n 1 29 LEU n 1 30 LYS n 1 31 ILE n 1 32 PRO n 1 33 ASN n 1 34 VAL n 1 35 GLU n 1 36 ARG n 1 37 LYS n 1 38 ILE n 1 39 LEU n 1 40 ASP n 1 41 LEU n 1 42 TYR n 1 43 SER n 1 44 LEU n 1 45 SER n 1 46 LYS n 1 47 ILE n 1 48 VAL n 1 49 ILE n 1 50 GLU n 1 51 GLU n 1 52 GLY n 1 53 GLY n 1 54 TYR n 1 55 GLU n 1 56 ALA n 1 57 ILE n 1 58 CYS n 1 59 LYS n 1 60 ASP n 1 61 ARG n 1 62 ARG n 1 63 TRP n 1 64 ALA n 1 65 ARG n 1 66 VAL n 1 67 ALA n 1 68 GLN n 1 69 ARG n 1 70 LEU n 1 71 HIS n 1 72 TYR n 1 73 PRO n 1 74 PRO n 1 75 GLY n 1 76 LYS n 1 77 ASN n 1 78 ILE n 1 79 GLY n 1 80 SER n 1 81 LEU n 1 82 LEU n 1 83 ARG n 1 84 SER n 1 85 HIS n 1 86 TYR n 1 87 GLU n 1 88 ARG n 1 89 ILE n 1 90 ILE n 1 91 TYR n 1 92 PRO n 1 93 TYR n 1 94 GLU n 1 95 MET n 1 96 PHE n 1 97 GLN n 1 98 SER n 1 99 GLY n 1 100 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'SMCY, HY, HYA, JARID1D, KIAA0234' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060731-15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code JAD1D_HUMAN _struct_ref.pdbx_db_accession Q9BY66 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGSLLRSHYE RIIYPYEMFQSGA ; _struct_ref.pdbx_align_begin 79 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YQE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 100 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BY66 _struct_ref_seq.db_align_beg 79 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 171 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 79 _struct_ref_seq.pdbx_auth_seq_align_end 171 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YQE GLY A 1 ? UNP Q9BY66 ? ? 'expression tag' 72 1 1 2YQE SER A 2 ? UNP Q9BY66 ? ? 'expression tag' 73 2 1 2YQE SER A 3 ? UNP Q9BY66 ? ? 'expression tag' 74 3 1 2YQE GLY A 4 ? UNP Q9BY66 ? ? 'expression tag' 75 4 1 2YQE SER A 5 ? UNP Q9BY66 ? ? 'expression tag' 76 5 1 2YQE SER A 6 ? UNP Q9BY66 ? ? 'expression tag' 77 6 1 2YQE GLY A 7 ? UNP Q9BY66 ? ? 'expression tag' 78 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2YQE _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2YQE _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2YQE _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20060702 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.1 'Guntert, P.' 5 refinement CYANA 2.1 'Guntert, P.' 6 # _exptl.entry_id 2YQE _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2YQE _struct.title 'Solution structure of the ARID domain of JARID1D protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YQE _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;ARID domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 9 ? GLY A 26 ? ARG A 80 GLY A 97 1 ? 18 HELX_P HELX_P2 2 ASP A 40 ? GLY A 52 ? ASP A 111 GLY A 123 1 ? 13 HELX_P HELX_P3 3 GLY A 53 ? ASP A 60 ? GLY A 124 ASP A 131 1 ? 8 HELX_P HELX_P4 4 ARG A 62 ? LEU A 70 ? ARG A 133 LEU A 141 1 ? 9 HELX_P HELX_P5 5 ASN A 77 ? ILE A 89 ? ASN A 148 ILE A 160 1 ? 13 HELX_P HELX_P6 6 ILE A 89 ? GLN A 97 ? ILE A 160 GLN A 168 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2YQE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YQE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 72 72 GLY GLY A . n A 1 2 SER 2 73 73 SER SER A . n A 1 3 SER 3 74 74 SER SER A . n A 1 4 GLY 4 75 75 GLY GLY A . n A 1 5 SER 5 76 76 SER SER A . n A 1 6 SER 6 77 77 SER SER A . n A 1 7 GLY 7 78 78 GLY GLY A . n A 1 8 THR 8 79 79 THR THR A . n A 1 9 ARG 9 80 80 ARG ARG A . n A 1 10 VAL 10 81 81 VAL VAL A . n A 1 11 LYS 11 82 82 LYS LYS A . n A 1 12 LEU 12 83 83 LEU LEU A . n A 1 13 ASN 13 84 84 ASN ASN A . n A 1 14 TYR 14 85 85 TYR TYR A . n A 1 15 LEU 15 86 86 LEU LEU A . n A 1 16 ASP 16 87 87 ASP ASP A . n A 1 17 GLN 17 88 88 GLN GLN A . n A 1 18 ILE 18 89 89 ILE ILE A . n A 1 19 ALA 19 90 90 ALA ALA A . n A 1 20 LYS 20 91 91 LYS LYS A . n A 1 21 PHE 21 92 92 PHE PHE A . n A 1 22 TRP 22 93 93 TRP TRP A . n A 1 23 GLU 23 94 94 GLU GLU A . n A 1 24 ILE 24 95 95 ILE ILE A . n A 1 25 GLN 25 96 96 GLN GLN A . n A 1 26 GLY 26 97 97 GLY GLY A . n A 1 27 SER 27 98 98 SER SER A . n A 1 28 SER 28 99 99 SER SER A . n A 1 29 LEU 29 100 100 LEU LEU A . n A 1 30 LYS 30 101 101 LYS LYS A . n A 1 31 ILE 31 102 102 ILE ILE A . n A 1 32 PRO 32 103 103 PRO PRO A . n A 1 33 ASN 33 104 104 ASN ASN A . n A 1 34 VAL 34 105 105 VAL VAL A . n A 1 35 GLU 35 106 106 GLU GLU A . n A 1 36 ARG 36 107 107 ARG ARG A . n A 1 37 LYS 37 108 108 LYS LYS A . n A 1 38 ILE 38 109 109 ILE ILE A . n A 1 39 LEU 39 110 110 LEU LEU A . n A 1 40 ASP 40 111 111 ASP ASP A . n A 1 41 LEU 41 112 112 LEU LEU A . n A 1 42 TYR 42 113 113 TYR TYR A . n A 1 43 SER 43 114 114 SER SER A . n A 1 44 LEU 44 115 115 LEU LEU A . n A 1 45 SER 45 116 116 SER SER A . n A 1 46 LYS 46 117 117 LYS LYS A . n A 1 47 ILE 47 118 118 ILE ILE A . n A 1 48 VAL 48 119 119 VAL VAL A . n A 1 49 ILE 49 120 120 ILE ILE A . n A 1 50 GLU 50 121 121 GLU GLU A . n A 1 51 GLU 51 122 122 GLU GLU A . n A 1 52 GLY 52 123 123 GLY GLY A . n A 1 53 GLY 53 124 124 GLY GLY A . n A 1 54 TYR 54 125 125 TYR TYR A . n A 1 55 GLU 55 126 126 GLU GLU A . n A 1 56 ALA 56 127 127 ALA ALA A . n A 1 57 ILE 57 128 128 ILE ILE A . n A 1 58 CYS 58 129 129 CYS CYS A . n A 1 59 LYS 59 130 130 LYS LYS A . n A 1 60 ASP 60 131 131 ASP ASP A . n A 1 61 ARG 61 132 132 ARG ARG A . n A 1 62 ARG 62 133 133 ARG ARG A . n A 1 63 TRP 63 134 134 TRP TRP A . n A 1 64 ALA 64 135 135 ALA ALA A . n A 1 65 ARG 65 136 136 ARG ARG A . n A 1 66 VAL 66 137 137 VAL VAL A . n A 1 67 ALA 67 138 138 ALA ALA A . n A 1 68 GLN 68 139 139 GLN GLN A . n A 1 69 ARG 69 140 140 ARG ARG A . n A 1 70 LEU 70 141 141 LEU LEU A . n A 1 71 HIS 71 142 142 HIS HIS A . n A 1 72 TYR 72 143 143 TYR TYR A . n A 1 73 PRO 73 144 144 PRO PRO A . n A 1 74 PRO 74 145 145 PRO PRO A . n A 1 75 GLY 75 146 146 GLY GLY A . n A 1 76 LYS 76 147 147 LYS LYS A . n A 1 77 ASN 77 148 148 ASN ASN A . n A 1 78 ILE 78 149 149 ILE ILE A . n A 1 79 GLY 79 150 150 GLY GLY A . n A 1 80 SER 80 151 151 SER SER A . n A 1 81 LEU 81 152 152 LEU LEU A . n A 1 82 LEU 82 153 153 LEU LEU A . n A 1 83 ARG 83 154 154 ARG ARG A . n A 1 84 SER 84 155 155 SER SER A . n A 1 85 HIS 85 156 156 HIS HIS A . n A 1 86 TYR 86 157 157 TYR TYR A . n A 1 87 GLU 87 158 158 GLU GLU A . n A 1 88 ARG 88 159 159 ARG ARG A . n A 1 89 ILE 89 160 160 ILE ILE A . n A 1 90 ILE 90 161 161 ILE ILE A . n A 1 91 TYR 91 162 162 TYR TYR A . n A 1 92 PRO 92 163 163 PRO PRO A . n A 1 93 TYR 93 164 164 TYR TYR A . n A 1 94 GLU 94 165 165 GLU GLU A . n A 1 95 MET 95 166 166 MET MET A . n A 1 96 PHE 96 167 167 PHE PHE A . n A 1 97 GLN 97 168 168 GLN GLN A . n A 1 98 SER 98 169 169 SER SER A . n A 1 99 GLY 99 170 170 GLY GLY A . n A 1 100 ALA 100 171 171 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 76 ? ? -170.53 135.40 2 1 THR A 79 ? ? -94.84 38.58 3 1 ARG A 80 ? ? -79.29 -74.14 4 1 LYS A 82 ? ? -39.86 -27.87 5 1 GLU A 94 ? ? -39.31 -31.96 6 1 ARG A 107 ? ? 36.94 41.68 7 1 ARG A 132 ? ? 35.36 41.28 8 1 TRP A 134 ? ? -38.28 -37.44 9 1 ASN A 148 ? ? -66.53 72.93 10 1 HIS A 156 ? ? -36.96 -39.22 11 1 GLN A 168 ? ? -84.69 41.27 12 2 THR A 79 ? ? -49.42 95.87 13 2 TYR A 85 ? ? -39.53 -32.89 14 2 GLU A 94 ? ? -39.17 -36.91 15 2 ARG A 132 ? ? 39.07 50.87 16 2 LYS A 147 ? ? -59.85 179.99 17 2 ASN A 148 ? ? -93.97 42.22 18 3 ARG A 80 ? ? -124.87 -63.42 19 3 LYS A 82 ? ? -35.13 -31.92 20 3 SER A 99 ? ? -55.51 173.26 21 3 ALA A 127 ? ? -65.58 -70.46 22 3 ARG A 132 ? ? 36.04 37.99 23 3 PRO A 145 ? ? -69.77 96.68 24 3 ASN A 148 ? ? -62.87 75.99 25 3 TYR A 157 ? ? -68.57 -70.27 26 4 GLN A 88 ? ? -72.26 -71.03 27 4 SER A 98 ? ? -167.02 110.27 28 4 SER A 99 ? ? -43.84 163.28 29 4 ARG A 132 ? ? 36.98 44.56 30 4 ASN A 148 ? ? -66.68 81.39 31 4 SER A 169 ? ? -60.12 96.09 32 5 SER A 99 ? ? -49.88 166.68 33 5 ARG A 132 ? ? 34.39 35.92 34 5 HIS A 142 ? ? 71.91 35.82 35 5 SER A 155 ? ? -61.34 -71.93 36 5 HIS A 156 ? ? -37.37 -34.94 37 5 GLN A 168 ? ? -96.03 38.07 38 6 ARG A 80 ? ? -123.94 -53.69 39 6 LYS A 82 ? ? -36.93 -30.33 40 6 ARG A 132 ? ? 34.31 52.23 41 6 PRO A 145 ? ? -69.79 94.80 42 6 LYS A 147 ? ? -49.56 168.55 43 6 ASN A 148 ? ? -83.39 43.80 44 6 GLN A 168 ? ? -75.65 49.52 45 7 SER A 76 ? ? -56.71 91.69 46 7 LYS A 82 ? ? -35.90 -31.10 47 7 ARG A 132 ? ? 34.46 43.43 48 7 HIS A 142 ? ? 71.42 48.88 49 7 PRO A 145 ? ? -69.80 95.27 50 7 ASN A 148 ? ? -63.76 81.14 51 7 GLN A 168 ? ? -93.91 46.28 52 8 SER A 76 ? ? -40.70 105.31 53 8 ARG A 80 ? ? -130.82 -64.79 54 8 LYS A 82 ? ? -38.99 -27.83 55 8 GLN A 88 ? ? -78.74 -70.58 56 8 ARG A 132 ? ? 37.70 45.72 57 8 PRO A 145 ? ? -69.72 97.78 58 8 ASN A 148 ? ? -66.68 82.68 59 8 HIS A 156 ? ? -39.91 -36.16 60 8 GLN A 168 ? ? -93.52 41.98 61 9 LYS A 82 ? ? -37.22 -33.09 62 9 GLU A 94 ? ? -37.68 -39.34 63 9 SER A 99 ? ? -38.02 150.78 64 9 ALA A 127 ? ? -53.75 -71.29 65 9 ARG A 132 ? ? 35.45 44.90 66 9 LYS A 147 ? ? -58.15 171.00 67 9 ASN A 148 ? ? -87.20 42.20 68 10 SER A 74 ? ? -45.34 158.04 69 10 ARG A 80 ? ? -131.48 -69.46 70 10 LYS A 82 ? ? -36.12 -33.25 71 10 GLU A 94 ? ? -36.96 -31.54 72 10 ARG A 132 ? ? 41.91 29.36 73 10 ASN A 148 ? ? -83.86 43.36 74 10 ARG A 154 ? ? -39.21 -39.97 75 10 SER A 155 ? ? -67.56 -70.01 76 10 HIS A 156 ? ? -37.17 -33.57 77 10 GLN A 168 ? ? -104.76 73.26 78 11 THR A 79 ? ? -104.59 41.69 79 11 GLU A 94 ? ? -36.91 -32.53 80 11 ASP A 111 ? ? -103.41 75.05 81 11 ALA A 127 ? ? -63.15 -70.96 82 11 ARG A 132 ? ? 35.47 51.92 83 11 SER A 155 ? ? -68.16 -71.15 84 11 HIS A 156 ? ? -37.03 -37.91 85 11 GLN A 168 ? ? -88.29 38.99 86 12 THR A 79 ? ? -60.83 92.64 87 12 LYS A 82 ? ? -35.24 -32.88 88 12 GLU A 94 ? ? -34.82 -33.15 89 12 SER A 99 ? ? -41.46 159.10 90 12 ARG A 132 ? ? 35.21 48.20 91 12 ASN A 148 ? ? -68.11 82.55 92 12 GLN A 168 ? ? -92.55 48.05 93 13 LYS A 82 ? ? -36.34 -31.39 94 13 ARG A 107 ? ? 37.09 39.13 95 13 ALA A 127 ? ? -72.06 -71.21 96 13 ARG A 132 ? ? 34.24 35.58 97 13 PRO A 145 ? ? -69.74 94.51 98 13 ASN A 148 ? ? -69.88 75.75 99 13 ARG A 154 ? ? -39.93 -38.77 100 13 SER A 169 ? ? -84.13 47.92 101 14 LYS A 82 ? ? -37.47 -28.27 102 14 ALA A 127 ? ? -62.09 -71.35 103 14 ARG A 132 ? ? 36.11 54.60 104 14 ASN A 148 ? ? -65.86 75.43 105 14 GLN A 168 ? ? -75.70 48.67 106 14 SER A 169 ? ? -127.22 -60.30 107 15 SER A 77 ? ? -57.07 104.57 108 15 ARG A 132 ? ? 34.63 43.93 109 15 GLN A 168 ? ? -91.02 41.50 110 16 SER A 77 ? ? -94.49 40.57 111 16 THR A 79 ? ? -43.50 105.89 112 16 ARG A 80 ? ? -127.19 -69.25 113 16 LYS A 82 ? ? -39.03 -30.70 114 16 ARG A 132 ? ? 34.45 46.74 115 16 PRO A 145 ? ? -69.79 89.18 116 16 LYS A 147 ? ? -45.38 166.00 117 16 GLN A 168 ? ? -87.59 38.72 118 17 ARG A 80 ? ? -123.47 -57.52 119 17 GLU A 94 ? ? -34.48 -37.97 120 17 SER A 99 ? ? -47.18 158.69 121 17 ASP A 111 ? ? -69.05 75.11 122 17 ALA A 127 ? ? -67.75 -71.26 123 17 ARG A 132 ? ? 33.48 40.25 124 17 ASN A 148 ? ? -64.58 76.52 125 17 GLN A 168 ? ? -98.52 38.08 126 18 THR A 79 ? ? -62.57 96.17 127 18 LYS A 82 ? ? -36.87 -32.96 128 18 GLU A 106 ? ? 39.80 53.21 129 18 ARG A 132 ? ? 35.53 50.76 130 18 PRO A 145 ? ? -69.77 99.99 131 18 ASN A 148 ? ? -65.00 75.51 132 19 SER A 73 ? ? 39.22 42.10 133 19 ARG A 107 ? ? 35.53 43.05 134 19 ALA A 127 ? ? -67.38 -71.36 135 19 ARG A 132 ? ? 34.23 38.87 136 19 TRP A 134 ? ? -35.54 -37.22 137 19 PRO A 145 ? ? -69.75 90.88 138 19 ASN A 148 ? ? -67.29 81.33 139 20 THR A 79 ? ? -89.89 41.12 140 20 GLU A 94 ? ? -39.41 -25.78 141 20 ARG A 107 ? ? 38.42 36.91 142 20 GLN A 168 ? ? -96.76 41.62 #