data_2YRC # _entry.id 2YRC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YRC pdb_00002yrc 10.2210/pdb2yrc/pdb RCSB RCSB027036 ? ? WWPDB D_1000027036 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002022249.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YRC _pdbx_database_status.recvd_initial_deposition_date 2007-04-02 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagashima, T.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the zf-Sec23_Sec24 from human Sec23A' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagashima, T.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein transport protein Sec23A' 6461.266 1 ? ? zf-Sec23_Sec24 ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SEC23-related protein A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002022249.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 PRO n 1 10 VAL n 1 11 LEU n 1 12 CYS n 1 13 SER n 1 14 ARG n 1 15 THR n 1 16 THR n 1 17 CYS n 1 18 ARG n 1 19 ALA n 1 20 VAL n 1 21 LEU n 1 22 ASN n 1 23 PRO n 1 24 LEU n 1 25 CYS n 1 26 GLN n 1 27 VAL n 1 28 ASP n 1 29 TYR n 1 30 ARG n 1 31 ALA n 1 32 LYS n 1 33 LEU n 1 34 TRP n 1 35 ALA n 1 36 CYS n 1 37 ASN n 1 38 PHE n 1 39 CYS n 1 40 TYR n 1 41 GLN n 1 42 ARG n 1 43 ASN n 1 44 GLN n 1 45 PHE n 1 46 PRO n 1 47 PRO n 1 48 SER n 1 49 TYR n 1 50 ALA n 1 51 GLY n 1 52 ILE n 1 53 SER n 1 54 GLU n 1 55 LEU n 1 56 ASN n 1 57 GLN n 1 58 PRO n 1 59 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060613-07 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SC23A_HUMAN _struct_ref.pdbx_db_accession Q15436 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA _struct_ref.pdbx_align_begin 57 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YRC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 59 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15436 _struct_ref_seq.db_align_beg 57 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 108 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 57 _struct_ref_seq.pdbx_auth_seq_align_end 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YRC GLY A 1 ? UNP Q15436 ? ? 'expression tag' 50 1 1 2YRC SER A 2 ? UNP Q15436 ? ? 'expression tag' 51 2 1 2YRC SER A 3 ? UNP Q15436 ? ? 'expression tag' 52 3 1 2YRC GLY A 4 ? UNP Q15436 ? ? 'expression tag' 53 4 1 2YRC SER A 5 ? UNP Q15436 ? ? 'expression tag' 54 5 1 2YRC SER A 6 ? UNP Q15436 ? ? 'expression tag' 55 6 1 2YRC GLY A 7 ? UNP Q15436 ? ? 'expression tag' 56 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.12mM uniformly 13C, 15N-labeled protein; 20mM TrisHCl, 100mM NaCl, 1mM DTT, 0.02%NaN3, 0.05mM ZnCl2, 1mM IDA, 10% D2O, 90% H2O' _pdbx_nmr_sample_details.solvent_system '10% D2O / 90% H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2YRC _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2YRC _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2YRC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20020425 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9822 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2YRC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2YRC _struct.title 'Solution structure of the zf-Sec23_Sec24 from human Sec23A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YRC _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;zinc binding, COPII, coat protein complex-II, endoplasmic reticulum, Golgi, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 29 ? ALA A 31 ? TYR A 78 ALA A 80 5 ? 3 HELX_P HELX_P2 2 ILE A 52 ? GLN A 57 ? ILE A 101 GLN A 106 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 12 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 61 A ZN 200 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc2 metalc ? ? A CYS 17 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 66 A ZN 200 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc3 metalc ? ? A CYS 36 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 85 A ZN 200 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc4 metalc ? ? A CYS 39 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 88 A ZN 200 1_555 ? ? ? ? ? ? ? 2.347 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 26 ? ASP A 28 ? GLN A 75 ASP A 77 A 2 LEU A 33 ? ALA A 35 ? LEU A 82 ALA A 84 A 3 ARG A 42 ? GLN A 44 ? ARG A 91 GLN A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 26 ? N GLN A 75 O ALA A 35 ? O ALA A 84 A 2 3 N TRP A 34 ? N TRP A 83 O ASN A 43 ? O ASN A 92 # _database_PDB_matrix.entry_id 2YRC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YRC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 50 50 GLY GLY A . n A 1 2 SER 2 51 51 SER SER A . n A 1 3 SER 3 52 52 SER SER A . n A 1 4 GLY 4 53 53 GLY GLY A . n A 1 5 SER 5 54 54 SER SER A . n A 1 6 SER 6 55 55 SER SER A . n A 1 7 GLY 7 56 56 GLY GLY A . n A 1 8 GLU 8 57 57 GLU GLU A . n A 1 9 PRO 9 58 58 PRO PRO A . n A 1 10 VAL 10 59 59 VAL VAL A . n A 1 11 LEU 11 60 60 LEU LEU A . n A 1 12 CYS 12 61 61 CYS CYS A . n A 1 13 SER 13 62 62 SER SER A . n A 1 14 ARG 14 63 63 ARG ARG A . n A 1 15 THR 15 64 64 THR THR A . n A 1 16 THR 16 65 65 THR THR A . n A 1 17 CYS 17 66 66 CYS CYS A . n A 1 18 ARG 18 67 67 ARG ARG A . n A 1 19 ALA 19 68 68 ALA ALA A . n A 1 20 VAL 20 69 69 VAL VAL A . n A 1 21 LEU 21 70 70 LEU LEU A . n A 1 22 ASN 22 71 71 ASN ASN A . n A 1 23 PRO 23 72 72 PRO PRO A . n A 1 24 LEU 24 73 73 LEU LEU A . n A 1 25 CYS 25 74 74 CYS CYS A . n A 1 26 GLN 26 75 75 GLN GLN A . n A 1 27 VAL 27 76 76 VAL VAL A . n A 1 28 ASP 28 77 77 ASP ASP A . n A 1 29 TYR 29 78 78 TYR TYR A . n A 1 30 ARG 30 79 79 ARG ARG A . n A 1 31 ALA 31 80 80 ALA ALA A . n A 1 32 LYS 32 81 81 LYS LYS A . n A 1 33 LEU 33 82 82 LEU LEU A . n A 1 34 TRP 34 83 83 TRP TRP A . n A 1 35 ALA 35 84 84 ALA ALA A . n A 1 36 CYS 36 85 85 CYS CYS A . n A 1 37 ASN 37 86 86 ASN ASN A . n A 1 38 PHE 38 87 87 PHE PHE A . n A 1 39 CYS 39 88 88 CYS CYS A . n A 1 40 TYR 40 89 89 TYR TYR A . n A 1 41 GLN 41 90 90 GLN GLN A . n A 1 42 ARG 42 91 91 ARG ARG A . n A 1 43 ASN 43 92 92 ASN ASN A . n A 1 44 GLN 44 93 93 GLN GLN A . n A 1 45 PHE 45 94 94 PHE PHE A . n A 1 46 PRO 46 95 95 PRO PRO A . n A 1 47 PRO 47 96 96 PRO PRO A . n A 1 48 SER 48 97 97 SER SER A . n A 1 49 TYR 49 98 98 TYR TYR A . n A 1 50 ALA 50 99 99 ALA ALA A . n A 1 51 GLY 51 100 100 GLY GLY A . n A 1 52 ILE 52 101 101 ILE ILE A . n A 1 53 SER 53 102 102 SER SER A . n A 1 54 GLU 54 103 103 GLU GLU A . n A 1 55 LEU 55 104 104 LEU LEU A . n A 1 56 ASN 56 105 105 ASN ASN A . n A 1 57 GLN 57 106 106 GLN GLN A . n A 1 58 PRO 58 107 107 PRO PRO A . n A 1 59 ALA 59 108 108 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 200 _pdbx_nonpoly_scheme.auth_seq_num 200 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 12 ? A CYS 61 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 17 ? A CYS 66 ? 1_555 117.4 ? 2 SG ? A CYS 12 ? A CYS 61 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 36 ? A CYS 85 ? 1_555 110.9 ? 3 SG ? A CYS 17 ? A CYS 66 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 36 ? A CYS 85 ? 1_555 106.1 ? 4 SG ? A CYS 12 ? A CYS 61 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 39 ? A CYS 88 ? 1_555 105.9 ? 5 SG ? A CYS 17 ? A CYS 66 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 39 ? A CYS 88 ? 1_555 113.5 ? 6 SG ? A CYS 36 ? A CYS 85 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 39 ? A CYS 88 ? 1_555 102.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 52 ? ? -52.76 177.36 2 1 ARG A 63 ? ? -34.60 122.12 3 1 ASP A 77 ? ? -102.83 63.21 4 1 TYR A 78 ? ? -37.01 -39.17 5 1 LYS A 81 ? ? 36.55 45.56 6 1 PHE A 87 ? ? -101.18 -75.07 7 2 ARG A 67 ? ? 34.38 51.10 8 2 LEU A 70 ? ? -36.13 127.74 9 2 LYS A 81 ? ? 34.56 40.96 10 2 PHE A 87 ? ? -97.99 -74.96 11 2 ASN A 105 ? ? -55.40 -70.01 12 3 SER A 51 ? ? -56.06 108.10 13 3 VAL A 59 ? ? -67.38 90.62 14 3 CYS A 61 ? ? -34.76 143.34 15 3 CYS A 66 ? ? -78.35 -72.80 16 3 PRO A 72 ? ? -69.82 2.98 17 3 LYS A 81 ? ? 35.03 47.82 18 3 PHE A 87 ? ? -86.07 -75.41 19 3 TYR A 89 ? ? 73.62 47.78 20 4 ARG A 67 ? ? 36.95 41.68 21 4 PRO A 72 ? ? -69.73 2.69 22 4 CYS A 74 ? ? -46.09 155.09 23 4 LYS A 81 ? ? 34.33 42.22 24 4 PHE A 87 ? ? -91.92 -75.67 25 4 TYR A 89 ? ? 70.99 48.94 26 4 ASN A 105 ? ? -60.83 86.59 27 5 VAL A 69 ? ? -37.15 144.10 28 5 CYS A 74 ? ? -46.49 153.83 29 5 ASP A 77 ? ? -107.74 55.75 30 5 LYS A 81 ? ? 34.32 45.49 31 5 PHE A 87 ? ? -95.55 -74.79 32 5 TYR A 98 ? ? -105.60 42.94 33 6 SER A 51 ? ? -35.00 120.27 34 6 CYS A 61 ? ? -43.40 156.90 35 6 CYS A 66 ? ? -68.88 -71.18 36 6 LEU A 70 ? ? -37.22 125.38 37 6 ASP A 77 ? ? -107.80 67.32 38 6 LYS A 81 ? ? 34.93 36.42 39 6 PHE A 87 ? ? -91.18 -75.33 40 6 TYR A 89 ? ? 70.72 47.65 41 6 ILE A 101 ? ? -33.70 110.09 42 7 SER A 51 ? ? -41.44 150.83 43 7 ASP A 77 ? ? -102.86 57.45 44 7 TYR A 78 ? ? -35.80 -38.46 45 7 LYS A 81 ? ? 34.40 43.80 46 7 PHE A 87 ? ? -108.67 -74.74 47 7 ALA A 99 ? ? -35.76 128.71 48 7 ILE A 101 ? ? -42.78 108.42 49 7 LEU A 104 ? ? -90.67 41.28 50 8 SER A 54 ? ? -47.34 168.85 51 8 CYS A 66 ? ? -64.53 -70.44 52 8 PRO A 72 ? ? -69.76 0.21 53 8 PHE A 87 ? ? -103.73 -74.86 54 8 PRO A 96 ? ? -69.80 2.97 55 8 SER A 97 ? ? -121.26 -58.88 56 8 TYR A 98 ? ? 36.90 36.68 57 9 SER A 54 ? ? -82.73 44.96 58 9 ARG A 63 ? ? -46.02 106.37 59 9 CYS A 66 ? ? -79.06 -70.80 60 9 TYR A 78 ? ? -37.04 -28.77 61 9 LYS A 81 ? ? 39.82 45.71 62 9 PHE A 87 ? ? -112.19 -72.45 63 10 PRO A 72 ? ? -69.74 1.67 64 10 PHE A 87 ? ? -100.50 -75.01 65 10 TYR A 98 ? ? -104.07 44.91 66 11 VAL A 59 ? ? -67.46 89.00 67 11 CYS A 61 ? ? -37.58 150.28 68 11 ARG A 63 ? ? -45.41 109.14 69 11 PRO A 72 ? ? -69.77 2.08 70 11 PHE A 87 ? ? -98.96 -75.12 71 11 ILE A 101 ? ? -48.59 108.40 72 12 ARG A 63 ? ? -43.64 160.11 73 12 THR A 65 ? ? -89.64 37.86 74 12 CYS A 66 ? ? -133.39 -61.91 75 12 ARG A 67 ? ? 37.64 37.79 76 12 LEU A 70 ? ? -39.23 122.00 77 12 PRO A 72 ? ? -69.84 2.53 78 12 ASP A 77 ? ? -111.50 78.51 79 12 LYS A 81 ? ? 35.00 45.13 80 12 PHE A 87 ? ? -98.50 -75.25 81 12 SER A 97 ? ? -112.35 78.90 82 12 TYR A 98 ? ? -83.45 39.39 83 12 LEU A 104 ? ? -99.30 -62.59 84 13 VAL A 59 ? ? -67.70 98.08 85 13 CYS A 66 ? ? -91.94 -65.57 86 13 TYR A 78 ? ? -38.11 -27.10 87 13 LYS A 81 ? ? 36.27 48.53 88 13 PHE A 87 ? ? -104.58 -74.79 89 13 ILE A 101 ? ? -38.94 121.16 90 14 VAL A 59 ? ? -67.15 89.68 91 14 ARG A 63 ? ? -44.93 151.27 92 14 PRO A 72 ? ? -69.79 2.66 93 14 ASP A 77 ? ? -106.95 73.64 94 14 PHE A 87 ? ? -103.06 -75.19 95 14 SER A 97 ? ? -107.44 -63.59 96 14 TYR A 98 ? ? 36.37 35.72 97 14 ILE A 101 ? ? -34.47 103.96 98 15 SER A 51 ? ? -86.82 42.31 99 15 SER A 52 ? ? 38.15 41.89 100 15 CYS A 66 ? ? -63.81 -70.96 101 15 PRO A 72 ? ? -69.76 1.36 102 15 ASP A 77 ? ? -109.62 78.12 103 15 PHE A 87 ? ? -96.96 -75.29 104 15 ALA A 99 ? ? -37.36 110.45 105 16 ARG A 67 ? ? 39.19 41.61 106 16 PRO A 72 ? ? -69.75 2.93 107 16 LYS A 81 ? ? 34.96 42.52 108 16 PHE A 87 ? ? -93.11 -75.27 109 16 SER A 97 ? ? -94.09 42.36 110 16 TYR A 98 ? ? -92.64 40.00 111 17 CYS A 61 ? ? -34.71 151.47 112 17 ARG A 67 ? ? 37.57 42.61 113 17 VAL A 69 ? ? -33.64 119.11 114 17 LEU A 70 ? ? -34.34 139.73 115 17 PRO A 72 ? ? -69.69 0.65 116 17 CYS A 74 ? ? -49.91 164.26 117 17 ASP A 77 ? ? -95.25 56.57 118 17 LYS A 81 ? ? 34.64 44.12 119 17 PHE A 87 ? ? -102.69 -75.02 120 17 ILE A 101 ? ? -36.02 112.39 121 17 LEU A 104 ? ? -92.98 49.25 122 18 SER A 52 ? ? -48.65 154.04 123 18 LEU A 70 ? ? -35.99 119.55 124 18 PRO A 72 ? ? -69.73 2.66 125 18 ASP A 77 ? ? -108.53 70.59 126 18 LYS A 81 ? ? 35.10 34.13 127 18 PHE A 87 ? ? -90.01 -76.04 128 19 SER A 55 ? ? -168.25 111.79 129 19 VAL A 59 ? ? -69.20 89.50 130 19 ARG A 67 ? ? 39.85 43.84 131 19 PRO A 72 ? ? -69.79 3.26 132 19 TYR A 78 ? ? -35.89 -30.47 133 19 LYS A 81 ? ? 34.25 45.86 134 19 PHE A 87 ? ? -102.62 -75.25 135 19 LEU A 104 ? ? -82.95 40.35 136 20 CYS A 66 ? ? -88.45 -70.20 137 20 ARG A 67 ? ? 37.45 44.08 138 20 VAL A 69 ? ? -32.63 148.62 139 20 PRO A 72 ? ? -69.75 1.97 140 20 ASP A 77 ? ? -115.37 77.24 141 20 TYR A 78 ? ? -35.04 -31.51 142 20 LYS A 81 ? ? 34.33 50.99 143 20 PHE A 87 ? ? -105.90 -75.16 144 20 ILE A 101 ? ? -39.99 144.30 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #