HEADER HYDROLASE 02-APR-07 2YRN TITLE SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN NEURON NAVIGATOR 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURON NAVIGATOR 2 ISOFORM 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CH DOMAIN; COMPND 5 SYNONYM: HELICASE APC DOWN-REGULATED 1, RETINOIC ACID INDUCIBLE IN COMPND 6 NEUROBLASTOMA 1, STEERIN-2, PORE MEMBRANE AND/OR FILAMENT- COMPND 7 INTERACTING-LIKE PROTEIN 2, UNC-53 HOMOLOG 2, UNC53H2; COMPND 8 EC: 3.6.1.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAV2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041004-11; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CALPONIN HOMOLGY DOMAIN, HELICASE, ALL ALPHA, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,Y.NAKAMURA,Y.FURUKAWA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 10-NOV-21 2YRN 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YRN 1 VERSN REVDAT 1 12-FEB-08 2YRN 0 JRNL AUTH T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,Y.NAKAMURA,Y.FURUKAWA, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN NEURON JRNL TITL 2 NAVIGATOR 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YRN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027047. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.30MM CH DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 20 -36.53 -35.05 REMARK 500 1 ASN A 28 -39.71 -38.70 REMARK 500 1 SER A 34 31.92 -90.85 REMARK 500 1 LYS A 37 -71.28 -37.59 REMARK 500 1 ARG A 38 150.54 -43.85 REMARK 500 1 ASP A 67 31.32 -87.54 REMARK 500 1 LEU A 99 -178.41 -62.88 REMARK 500 1 SER A 100 107.30 -162.95 REMARK 500 1 LYS A 110 -36.02 -34.32 REMARK 500 1 ALA A 111 -72.79 -78.00 REMARK 500 2 SER A 3 99.59 -49.09 REMARK 500 2 ARG A 9 -74.96 -99.93 REMARK 500 2 LYS A 37 -72.85 -94.00 REMARK 500 2 VAL A 51 -70.55 -54.55 REMARK 500 2 ASP A 67 34.98 -94.32 REMARK 500 2 ASN A 81 -72.29 -36.16 REMARK 500 2 GLN A 126 49.85 -81.77 REMARK 500 3 ASP A 67 35.10 -91.73 REMARK 500 3 ASN A 69 -70.88 -57.85 REMARK 500 3 ASN A 108 107.28 -52.69 REMARK 500 4 SER A 5 46.02 -108.09 REMARK 500 4 HIS A 14 79.92 -115.19 REMARK 500 4 ASN A 28 -35.71 -38.10 REMARK 500 4 HIS A 36 128.94 -35.23 REMARK 500 4 VAL A 51 -70.12 -68.11 REMARK 500 4 GLN A 55 -31.09 -38.06 REMARK 500 4 PRO A 72 98.62 -69.72 REMARK 500 4 ASN A 81 -72.61 -41.80 REMARK 500 4 ASN A 108 99.35 -54.23 REMARK 500 4 GLN A 126 75.89 -62.86 REMARK 500 5 HIS A 14 53.75 -119.52 REMARK 500 5 LEU A 16 -33.35 -39.10 REMARK 500 5 LYS A 37 47.82 -81.93 REMARK 500 5 VAL A 51 -70.54 -61.03 REMARK 500 5 ASP A 67 36.16 -92.11 REMARK 500 6 SER A 34 33.06 -91.76 REMARK 500 6 LYS A 37 -74.78 -38.25 REMARK 500 6 ARG A 38 150.21 -38.35 REMARK 500 6 ASP A 46 -19.02 -48.66 REMARK 500 6 GLN A 55 -29.57 -36.69 REMARK 500 6 ASP A 67 36.74 -86.82 REMARK 500 6 ASN A 81 -70.18 -36.56 REMARK 500 6 GLN A 97 116.46 -37.85 REMARK 500 7 ARG A 41 -64.77 -94.46 REMARK 500 7 VAL A 51 -70.35 -50.58 REMARK 500 7 ASP A 67 35.43 -89.14 REMARK 500 7 ASN A 81 -71.26 -39.51 REMARK 500 7 LEU A 99 170.09 -58.34 REMARK 500 7 GLN A 125 36.27 71.72 REMARK 500 8 SER A 3 157.86 -47.76 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE IS Q8IVL1-4, ISOFORM 4. DBREF 2YRN A 8 129 UNP Q8IVL1 NAV2_HUMAN 12 133 SEQADV 2YRN GLY A 1 UNP Q8IVL1 EXPRESSION TAG SEQADV 2YRN SER A 2 UNP Q8IVL1 EXPRESSION TAG SEQADV 2YRN SER A 3 UNP Q8IVL1 EXPRESSION TAG SEQADV 2YRN GLY A 4 UNP Q8IVL1 EXPRESSION TAG SEQADV 2YRN SER A 5 UNP Q8IVL1 EXPRESSION TAG SEQADV 2YRN SER A 6 UNP Q8IVL1 EXPRESSION TAG SEQADV 2YRN GLY A 7 UNP Q8IVL1 EXPRESSION TAG SEQADV 2YRN ALA A 32 UNP Q8IVL1 THR 36 ENGINEERED MUTATION SEQADV 2YRN ARG A 41 UNP Q8IVL1 LYS 45 ENGINEERED MUTATION SEQRES 1 A 129 GLY SER SER GLY SER SER GLY LYS ARG LYS PRO VAL ILE SEQRES 2 A 129 HIS GLY LEU GLU ASP GLN LYS ARG ILE TYR THR ASP TRP SEQRES 3 A 129 ALA ASN HIS TYR LEU ALA LYS SER GLY HIS LYS ARG LEU SEQRES 4 A 129 ILE ARG ASP LEU GLN GLN ASP VAL THR ASP GLY VAL LEU SEQRES 5 A 129 LEU ALA GLN ILE ILE GLN VAL VAL ALA ASN GLU LYS ILE SEQRES 6 A 129 GLU ASP ILE ASN GLY CYS PRO LYS ASN ARG SER GLN MET SEQRES 7 A 129 ILE GLU ASN ILE ASP ALA CYS LEU ASN PHE LEU ALA ALA SEQRES 8 A 129 LYS GLY ILE ASN ILE GLN GLY LEU SER ALA GLU GLU ILE SEQRES 9 A 129 ARG ASN GLY ASN LEU LYS ALA ILE LEU GLY LEU PHE PHE SEQRES 10 A 129 SER LEU SER ARG TYR LYS GLN GLN GLN GLN GLN PRO HELIX 1 1 GLY A 15 SER A 34 1 20 HELIX 2 2 ASP A 42 VAL A 47 1 6 HELIX 3 3 GLY A 50 ALA A 61 1 12 HELIX 4 4 SER A 76 LYS A 92 1 17 HELIX 5 5 SER A 100 GLY A 107 1 8 HELIX 6 6 ASN A 108 GLN A 124 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1