data_2YRY # _entry.id 2YRY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YRY pdb_00002yry 10.2210/pdb2yry/pdb RCSB RCSB027058 ? ? WWPDB D_1000027058 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002000946.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YRY _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Sato, M.' 2 'Koshiba, S.' 3 'Watanabe, S.' 4 'Harada, T.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the PH domain of Pleckstrin homology domain-containing family A member 6 from human' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Sato, M.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Watanabe, S.' 4 ? primary 'Harada, T.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _cell.entry_id 2YRY _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YRY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Pleckstrin homology domain-containing family A member 6' _entity.formula_weight 13730.462 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PH domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Phosphoinositol 3-phosphate-binding protein 3, PEPP-3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGGKRSHSMKRNPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSD NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGGKRSHSMKRNPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSD NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002000946.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLY n 1 9 LYS n 1 10 ARG n 1 11 SER n 1 12 HIS n 1 13 SER n 1 14 MET n 1 15 LYS n 1 16 ARG n 1 17 ASN n 1 18 PRO n 1 19 ASN n 1 20 ALA n 1 21 PRO n 1 22 VAL n 1 23 THR n 1 24 LYS n 1 25 ALA n 1 26 GLY n 1 27 TRP n 1 28 LEU n 1 29 PHE n 1 30 LYS n 1 31 GLN n 1 32 ALA n 1 33 SER n 1 34 SER n 1 35 GLY n 1 36 VAL n 1 37 LYS n 1 38 GLN n 1 39 TRP n 1 40 ASN n 1 41 LYS n 1 42 ARG n 1 43 TRP n 1 44 PHE n 1 45 VAL n 1 46 LEU n 1 47 VAL n 1 48 ASP n 1 49 ARG n 1 50 CYS n 1 51 LEU n 1 52 PHE n 1 53 TYR n 1 54 TYR n 1 55 LYS n 1 56 ASP n 1 57 GLU n 1 58 LYS n 1 59 GLU n 1 60 GLU n 1 61 SER n 1 62 ILE n 1 63 LEU n 1 64 GLY n 1 65 SER n 1 66 ILE n 1 67 PRO n 1 68 LEU n 1 69 LEU n 1 70 SER n 1 71 PHE n 1 72 ARG n 1 73 VAL n 1 74 ALA n 1 75 ALA n 1 76 VAL n 1 77 GLN n 1 78 PRO n 1 79 SER n 1 80 ASP n 1 81 ASN n 1 82 ILE n 1 83 SER n 1 84 ARG n 1 85 LYS n 1 86 HIS n 1 87 THR n 1 88 PHE n 1 89 LYS n 1 90 ALA n 1 91 GLU n 1 92 HIS n 1 93 ALA n 1 94 GLY n 1 95 VAL n 1 96 ARG n 1 97 THR n 1 98 TYR n 1 99 PHE n 1 100 PHE n 1 101 SER n 1 102 ALA n 1 103 GLU n 1 104 SER n 1 105 PRO n 1 106 GLU n 1 107 GLU n 1 108 GLN n 1 109 GLU n 1 110 ALA n 1 111 TRP n 1 112 ILE n 1 113 GLN n 1 114 ALA n 1 115 MET n 1 116 GLY n 1 117 GLU n 1 118 ALA n 1 119 ALA n 1 120 ARG n 1 121 VAL n 1 122 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PLEKHA6 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060515-01 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PKHA6_HUMAN _struct_ref.pdbx_db_accession Q9Y2H5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKRSHSMKRNPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHT FKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQ ; _struct_ref.pdbx_align_begin 46 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YRY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 122 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y2H5 _struct_ref_seq.db_align_beg 46 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 160 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 122 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YRY GLY A 1 ? UNP Q9Y2H5 ? ? 'expression tag' 1 1 1 2YRY SER A 2 ? UNP Q9Y2H5 ? ? 'expression tag' 2 2 1 2YRY SER A 3 ? UNP Q9Y2H5 ? ? 'expression tag' 3 3 1 2YRY GLY A 4 ? UNP Q9Y2H5 ? ? 'expression tag' 4 4 1 2YRY SER A 5 ? UNP Q9Y2H5 ? ? 'expression tag' 5 5 1 2YRY SER A 6 ? UNP Q9Y2H5 ? ? 'expression tag' 6 6 1 2YRY GLY A 7 ? UNP Q9Y2H5 ? ? 'expression tag' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.21mM PH domain U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YRY _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,target function' _pdbx_nmr_ensemble.entry_id 2YRY _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YRY # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 2YRY _exptl.crystals_number ? # _struct.entry_id 2YRY _struct.title 'Solution structure of the PH domain of Pleckstrin homology domain-containing family A member 6 from human' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YRY _struct_keywords.text ;PH domain, PEPP-3, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 105 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 119 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 105 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 119 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 64 ? PRO A 67 ? GLY A 64 PRO A 67 A 2 CYS A 50 ? TYR A 54 ? CYS A 50 TYR A 54 A 3 TRP A 39 ? VAL A 47 ? TRP A 39 VAL A 47 A 4 VAL A 22 ? GLN A 31 ? VAL A 22 GLN A 31 A 5 THR A 97 ? SER A 101 ? THR A 97 SER A 101 A 6 THR A 87 ? GLU A 91 ? THR A 87 GLU A 91 A 7 ARG A 72 ? ALA A 75 ? ARG A 72 ALA A 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 66 ? O ILE A 66 N LEU A 51 ? N LEU A 51 A 2 3 O PHE A 52 ? O PHE A 52 N VAL A 45 ? N VAL A 45 A 3 4 O LEU A 46 ? O LEU A 46 N LYS A 24 ? N LYS A 24 A 4 5 N PHE A 29 ? N PHE A 29 O SER A 101 ? O SER A 101 A 5 6 O PHE A 100 ? O PHE A 100 N PHE A 88 ? N PHE A 88 A 6 7 O LYS A 89 ? O LYS A 89 N ALA A 74 ? N ALA A 74 # _atom_sites.entry_id 2YRY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 TRP 27 27 27 TRP TRP A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 MET 115 115 115 MET MET A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 GLN 122 122 122 GLN GLN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 9 ? ? -173.92 143.01 2 1 ARG A 49 ? ? 45.64 29.07 3 1 ALA A 74 ? ? -171.65 138.55 4 1 PRO A 78 ? ? -69.78 0.28 5 1 VAL A 95 ? ? -100.34 -65.81 6 1 ARG A 96 ? ? -172.14 -178.42 7 1 ARG A 120 ? ? -38.51 144.45 8 2 ARG A 49 ? ? 46.07 25.57 9 2 GLU A 57 ? ? -83.37 41.14 10 2 PRO A 67 ? ? -69.77 96.81 11 2 VAL A 76 ? ? -57.41 -176.68 12 3 LYS A 37 ? ? -66.91 97.78 13 3 ARG A 49 ? ? 46.83 29.14 14 3 VAL A 73 ? ? -36.56 149.20 15 3 ALA A 74 ? ? -175.02 127.16 16 3 PRO A 78 ? ? -69.71 2.68 17 3 ASN A 81 ? ? -86.26 38.89 18 3 ALA A 93 ? ? -33.40 93.07 19 3 VAL A 95 ? ? -121.28 -75.14 20 3 ARG A 96 ? ? -171.83 -174.98 21 3 ARG A 120 ? ? -39.17 158.51 22 4 HIS A 12 ? ? -120.86 -56.79 23 4 ALA A 32 ? ? -70.41 -74.95 24 4 LYS A 37 ? ? 32.73 54.09 25 4 ARG A 49 ? ? 45.70 27.96 26 4 VAL A 76 ? ? -46.54 153.82 27 4 PRO A 78 ? ? -69.79 2.14 28 4 VAL A 95 ? ? -108.88 -70.30 29 4 ARG A 120 ? ? -34.55 129.42 30 5 ARG A 10 ? ? -35.54 146.02 31 5 ASN A 19 ? ? -97.55 41.16 32 5 ALA A 74 ? ? -170.99 130.68 33 5 ALA A 75 ? ? -43.73 167.62 34 5 PRO A 78 ? ? -69.72 0.41 35 5 ASN A 81 ? ? -88.18 48.47 36 5 VAL A 95 ? ? -91.93 -74.13 37 6 SER A 11 ? ? -167.05 116.93 38 6 ARG A 49 ? ? 45.73 27.40 39 6 LEU A 69 ? ? -58.93 -9.90 40 6 ARG A 72 ? ? -116.00 76.04 41 6 ASN A 81 ? ? -83.89 47.37 42 6 ARG A 84 ? ? -50.05 178.87 43 6 ALA A 93 ? ? 74.77 49.74 44 6 ARG A 120 ? ? -41.15 159.24 45 7 GLN A 38 ? ? -174.26 133.06 46 7 ALA A 74 ? ? -174.76 133.15 47 7 ALA A 75 ? ? -42.31 164.00 48 7 PRO A 78 ? ? -69.74 1.54 49 7 ARG A 84 ? ? -63.33 -178.02 50 7 LYS A 85 ? ? -127.04 -60.50 51 7 VAL A 95 ? ? -99.93 -64.00 52 7 ARG A 96 ? ? -174.13 -175.76 53 8 ARG A 49 ? ? 46.09 26.26 54 8 GLU A 57 ? ? -83.00 38.06 55 8 ALA A 75 ? ? -47.03 158.52 56 8 ASN A 81 ? ? -90.63 55.25 57 8 ARG A 96 ? ? -176.87 -179.89 58 8 ARG A 120 ? ? -44.02 162.98 59 9 VAL A 36 ? ? -48.09 171.06 60 9 ARG A 49 ? ? 45.70 27.28 61 9 GLU A 57 ? ? -79.76 44.10 62 9 PRO A 78 ? ? -69.78 3.19 63 9 ASN A 81 ? ? -85.78 46.45 64 9 ALA A 93 ? ? 73.57 41.98 65 9 VAL A 95 ? ? -109.91 -65.60 66 9 ARG A 96 ? ? -174.64 -178.36 67 9 ARG A 120 ? ? -36.52 151.07 68 10 SER A 6 ? ? -97.27 56.00 69 10 GLN A 31 ? ? -35.00 141.92 70 10 SER A 33 ? ? -124.77 -56.96 71 10 LYS A 37 ? ? -68.76 98.19 72 10 ARG A 49 ? ? 44.22 27.92 73 10 PRO A 67 ? ? -69.72 96.47 74 10 LEU A 69 ? ? -59.63 -9.42 75 10 ALA A 74 ? ? -171.73 132.35 76 10 ALA A 75 ? ? -40.95 156.53 77 10 ASN A 81 ? ? -96.19 35.23 78 10 SER A 83 ? ? -95.06 33.84 79 10 LYS A 85 ? ? -110.53 -73.96 80 10 ALA A 93 ? ? -31.52 92.99 81 10 VAL A 95 ? ? -131.58 -77.26 82 11 SER A 13 ? ? -46.08 106.14 83 11 LYS A 37 ? ? -64.57 83.66 84 11 LEU A 69 ? ? -47.81 -18.99 85 11 VAL A 76 ? ? -58.79 177.61 86 11 ARG A 96 ? ? -177.55 -178.51 87 11 ARG A 120 ? ? -57.53 -174.63 88 12 SER A 3 ? ? -171.83 147.65 89 12 SER A 6 ? ? -163.86 119.85 90 12 ARG A 10 ? ? -88.36 38.06 91 12 ALA A 32 ? ? -86.66 46.24 92 12 VAL A 36 ? ? -43.18 160.16 93 12 ARG A 49 ? ? 46.02 28.86 94 12 ASN A 81 ? ? -85.14 46.32 95 12 VAL A 95 ? ? -104.97 -71.44 96 13 VAL A 36 ? ? -49.80 167.76 97 13 ARG A 49 ? ? 47.17 28.31 98 13 ALA A 74 ? ? -174.06 128.14 99 13 ALA A 75 ? ? -41.40 160.27 100 13 ASN A 81 ? ? -94.07 46.81 101 13 VAL A 95 ? ? -109.92 -70.67 102 14 ARG A 10 ? ? -44.23 165.01 103 14 LYS A 24 ? ? -173.76 132.24 104 14 GLN A 38 ? ? -170.42 135.28 105 14 VAL A 73 ? ? -33.69 144.12 106 14 ALA A 74 ? ? -174.92 129.74 107 14 ALA A 75 ? ? -39.45 152.73 108 14 VAL A 76 ? ? -66.22 -176.38 109 14 ASN A 81 ? ? -84.52 47.29 110 14 ALA A 93 ? ? 70.79 37.24 111 14 VAL A 95 ? ? -107.26 -63.89 112 15 SER A 2 ? ? 37.76 42.19 113 15 SER A 13 ? ? -173.38 147.33 114 15 VAL A 22 ? ? -52.82 109.49 115 15 GLN A 38 ? ? -174.98 121.50 116 15 ARG A 49 ? ? 44.65 29.02 117 15 GLU A 57 ? ? -80.88 41.87 118 15 GLU A 60 ? ? -106.23 -64.01 119 15 PRO A 67 ? ? -69.72 80.24 120 15 LEU A 69 ? ? -49.32 -18.14 121 15 PRO A 78 ? ? -69.72 2.11 122 15 ASN A 81 ? ? -83.92 38.52 123 15 SER A 83 ? ? -81.81 40.73 124 15 LYS A 85 ? ? -106.68 -66.45 125 15 VAL A 95 ? ? -103.68 -67.42 126 15 ARG A 96 ? ? -170.41 -177.22 127 15 ILE A 112 ? ? -39.84 -34.12 128 16 SER A 5 ? ? -167.55 119.60 129 16 VAL A 36 ? ? -33.98 149.99 130 16 ARG A 49 ? ? 44.59 29.79 131 16 LEU A 69 ? ? -46.80 -19.57 132 16 ALA A 74 ? ? -174.47 136.59 133 16 ALA A 75 ? ? -40.84 162.70 134 16 PRO A 78 ? ? -69.70 1.36 135 16 LYS A 85 ? ? -96.63 -69.24 136 16 HIS A 92 ? ? -103.98 -75.05 137 16 ALA A 93 ? ? -175.94 105.00 138 16 VAL A 95 ? ? -132.64 -57.94 139 17 ARG A 10 ? ? -85.03 41.62 140 17 LYS A 37 ? ? -67.85 94.30 141 17 ARG A 49 ? ? 45.92 28.50 142 17 LYS A 55 ? ? -38.43 -39.43 143 17 GLU A 57 ? ? -80.75 42.94 144 17 PRO A 78 ? ? -69.72 1.30 145 17 ASN A 81 ? ? -90.86 47.54 146 17 VAL A 95 ? ? -104.99 -69.31 147 17 ARG A 120 ? ? -37.64 150.04 148 18 LYS A 9 ? ? -66.80 83.23 149 18 ARG A 10 ? ? 37.17 42.31 150 18 HIS A 12 ? ? -121.95 -52.49 151 18 LYS A 37 ? ? -59.39 104.43 152 18 GLN A 38 ? ? -172.96 132.20 153 18 ARG A 49 ? ? 45.14 27.45 154 18 GLU A 57 ? ? -81.43 41.52 155 18 GLU A 60 ? ? -101.59 -64.86 156 18 ALA A 74 ? ? -175.03 143.83 157 18 PRO A 78 ? ? -69.78 2.86 158 18 SER A 83 ? ? -83.68 40.09 159 18 HIS A 86 ? ? 71.36 52.19 160 18 VAL A 95 ? ? -107.46 -64.48 161 18 ARG A 96 ? ? -172.92 -179.34 162 19 TRP A 39 ? ? -45.36 159.11 163 19 ARG A 49 ? ? 45.51 27.10 164 19 LYS A 55 ? ? -38.35 -37.20 165 19 VAL A 76 ? ? -48.46 178.48 166 19 SER A 79 ? ? 75.00 40.46 167 19 VAL A 95 ? ? -109.74 -65.20 168 19 ARG A 96 ? ? -175.24 -178.30 169 20 ARG A 49 ? ? 45.45 27.96 170 20 GLU A 59 ? ? 32.82 54.99 171 20 ASN A 81 ? ? -83.15 49.06 172 20 LYS A 85 ? ? -109.91 -66.96 173 20 ALA A 93 ? ? -34.97 93.43 174 20 VAL A 95 ? ? -127.61 -75.06 #