data_2YS0 # _entry.id 2YS0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YS0 pdb_00002ys0 10.2210/pdb2ys0/pdb RCSB RCSB027060 ? ? WWPDB D_1000027060 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002000477.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YS0 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, H.' 1 'Sasagawa, A.' 2 'Tochio, N.' 3 'Tomizawa, T.' 4 'Koshiba, S.' 5 'Inoue, M.' 6 'Kigawa, T.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of the Somatomedin B domain of human Ectonucleotide pyrophosphatase/phosphodiesterase family member' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, H.' 1 ? primary 'Sasagawa, A.' 2 ? primary 'Tochio, N.' 3 ? primary 'Tomizawa, T.' 4 ? primary 'Koshiba, S.' 5 ? primary 'Inoue, M.' 6 ? primary 'Kigawa, T.' 7 ? primary 'Yokoyama, S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Ectonucleotide pyrophosphatase/phosphodiesterase family member 1' _entity.formula_weight 5841.409 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec '3.1.4.1, 3.6.1.9' _entity.pdbx_mutation ? _entity.pdbx_fragment somatomedin_B _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;'Ectonucleotide pyrophosphatase/phosphodiesterase 1, E-NPP 1, Phosphodiesterase I/nucleotide pyrophosphatase 1, Plasma-cell membrane glycoprotein PC-1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGWTCNKFRCGEKRLTRSLCACSDDCKDQGDCCINYSSVCQGEKSSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGWTCNKFRCGEKRLTRSLCACSDDCKDQGDCCINYSSVCQGEKSSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002000477.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TRP n 1 9 THR n 1 10 CYS n 1 11 ASN n 1 12 LYS n 1 13 PHE n 1 14 ARG n 1 15 CYS n 1 16 GLY n 1 17 GLU n 1 18 LYS n 1 19 ARG n 1 20 LEU n 1 21 THR n 1 22 ARG n 1 23 SER n 1 24 LEU n 1 25 CYS n 1 26 ALA n 1 27 CYS n 1 28 SER n 1 29 ASP n 1 30 ASP n 1 31 CYS n 1 32 LYS n 1 33 ASP n 1 34 GLN n 1 35 GLY n 1 36 ASP n 1 37 CYS n 1 38 CYS n 1 39 ILE n 1 40 ASN n 1 41 TYR n 1 42 SER n 1 43 SER n 1 44 VAL n 1 45 CYS n 1 46 GLN n 1 47 GLY n 1 48 GLU n 1 49 LYS n 1 50 SER n 1 51 SER n 1 52 GLY n 1 53 PRO n 1 54 SER n 1 55 SER n 1 56 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ENPP1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050118-03 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENPP1_HUMAN _struct_ref.pdbx_db_accession P22413 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code WTCNKFRCGEKRLTRSLCACSDDCKDKGDCCINYSSVCQGEKS _struct_ref.pdbx_align_begin 147 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YS0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 50 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22413 _struct_ref_seq.db_align_beg 147 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 189 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 50 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YS0 GLY A 1 ? UNP P22413 ? ? 'expression tag' 1 1 1 2YS0 SER A 2 ? UNP P22413 ? ? 'expression tag' 2 2 1 2YS0 SER A 3 ? UNP P22413 ? ? 'expression tag' 3 3 1 2YS0 GLY A 4 ? UNP P22413 ? ? 'expression tag' 4 4 1 2YS0 SER A 5 ? UNP P22413 ? ? 'expression tag' 5 5 1 2YS0 SER A 6 ? UNP P22413 ? ? 'expression tag' 6 6 1 2YS0 GLY A 7 ? UNP P22413 ? ? 'expression tag' 7 7 1 2YS0 GLN A 34 ? UNP P22413 LYS 173 'SEE REMARK 999' 34 8 1 2YS0 SER A 51 ? UNP P22413 ? ? 'expression tag' 51 9 1 2YS0 GLY A 52 ? UNP P22413 ? ? 'expression tag' 52 10 1 2YS0 PRO A 53 ? UNP P22413 ? ? 'expression tag' 53 11 1 2YS0 SER A 54 ? UNP P22413 ? ? 'expression tag' 54 12 1 2YS0 SER A 55 ? UNP P22413 ? ? 'expression tag' 55 13 1 2YS0 GLY A 56 ? UNP P22413 ? ? 'expression tag' 56 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.80mM sample U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YS0 _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.entry_id 2YS0 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YS0 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 2YS0 _exptl.crystals_number ? # _struct.entry_id 2YS0 _struct.title 'Solution structure of the Somatomedin B domain of human Ectonucleotide pyrophosphatase/phosphodiesterase family member' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YS0 _struct_keywords.text ;E-NPP 1, Phosphodiesterase I/nucleotide pyrophosphatase 1, Plasma-cell membrane glycoprotein PC-1, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 28 ? GLY A 35 ? SER A 28 GLY A 35 1 ? 8 HELX_P HELX_P2 2 ASN A 40 ? CYS A 45 ? ASN A 40 CYS A 45 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 27 SG ? ? A CYS 10 A CYS 27 1_555 ? ? ? ? ? ? ? 2.006 ? ? disulf2 disulf ? ? A CYS 15 SG ? ? ? 1_555 A CYS 45 SG ? ? A CYS 15 A CYS 45 1_555 ? ? ? ? ? ? ? 2.068 ? ? disulf3 disulf ? ? A CYS 25 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 25 A CYS 38 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf4 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 37 SG ? ? A CYS 31 A CYS 37 1_555 ? ? ? ? ? ? ? 2.073 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2YS0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 GLY 56 56 56 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE SWISSPROT shows that there is VARIANT AT THIS POSITION ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 10 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 SG _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 CYS _pdbx_validate_close_contact.auth_seq_id_2 38 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 8 ? ? -82.94 41.84 2 1 CYS A 27 ? ? -101.19 40.39 3 1 CYS A 38 ? ? -43.71 155.45 4 1 ASN A 40 ? ? -107.43 41.83 5 1 GLN A 46 ? ? -78.95 48.38 6 1 SER A 50 ? ? -164.55 119.02 7 1 SER A 55 ? ? -81.74 48.66 8 2 THR A 9 ? ? -47.70 164.21 9 2 CYS A 15 ? ? -44.25 99.35 10 2 CYS A 27 ? ? -96.84 42.74 11 3 TRP A 8 ? ? -96.08 40.95 12 3 CYS A 15 ? ? -42.09 107.93 13 3 CYS A 38 ? ? -41.54 159.61 14 3 GLN A 46 ? ? -79.87 43.73 15 3 SER A 54 ? ? -36.88 153.65 16 4 TRP A 8 ? ? -82.42 42.12 17 4 CYS A 15 ? ? -40.37 108.26 18 4 SER A 23 ? ? -39.55 159.57 19 4 ASP A 29 ? ? -80.30 44.32 20 4 ASP A 30 ? ? -131.48 -38.37 21 4 GLN A 46 ? ? -79.96 43.92 22 4 SER A 50 ? ? -174.95 105.70 23 5 CYS A 15 ? ? -36.13 101.65 24 5 ARG A 19 ? ? 35.77 46.28 25 5 LEU A 20 ? ? -102.84 66.06 26 5 SER A 23 ? ? -165.45 119.87 27 5 CYS A 27 ? ? -92.68 39.68 28 5 CYS A 38 ? ? -45.40 170.52 29 5 SER A 50 ? ? -98.63 41.30 30 5 PRO A 53 ? ? -69.73 2.01 31 6 SER A 3 ? ? -172.70 124.43 32 6 SER A 5 ? ? -111.31 79.47 33 6 SER A 6 ? ? -86.00 41.78 34 6 CYS A 15 ? ? -48.66 89.88 35 6 LYS A 18 ? ? -105.68 41.91 36 6 CYS A 27 ? ? -106.54 40.76 37 6 ASP A 30 ? ? -84.54 35.93 38 6 ASN A 40 ? ? -106.98 42.10 39 6 SER A 51 ? ? -39.94 141.14 40 6 PRO A 53 ? ? -69.72 85.99 41 7 CYS A 15 ? ? -45.76 105.49 42 7 ARG A 19 ? ? -37.64 125.18 43 7 CYS A 27 ? ? -91.36 42.72 44 7 ASP A 29 ? ? -80.76 42.87 45 7 ASP A 30 ? ? -133.11 -33.68 46 7 CYS A 38 ? ? -39.95 157.34 47 7 PRO A 53 ? ? -69.78 89.95 48 8 CYS A 15 ? ? -33.47 100.70 49 8 LYS A 18 ? ? -41.22 154.99 50 8 ARG A 22 ? ? -38.86 98.78 51 8 CYS A 27 ? ? -96.84 42.99 52 8 ASP A 30 ? ? -130.14 -33.16 53 8 CYS A 38 ? ? -39.26 137.78 54 8 ASN A 40 ? ? -103.10 43.56 55 8 PRO A 53 ? ? -69.78 91.21 56 9 THR A 9 ? ? -37.12 145.09 57 9 CYS A 15 ? ? -34.35 124.56 58 9 THR A 21 ? ? -39.90 -31.79 59 9 ARG A 22 ? ? -100.48 50.25 60 9 CYS A 37 ? ? -35.32 132.50 61 9 ASN A 40 ? ? -106.70 45.46 62 9 SER A 43 ? ? -36.96 -37.52 63 9 CYS A 45 ? ? -81.59 -73.86 64 9 GLN A 46 ? ? -80.05 44.28 65 9 SER A 50 ? ? -92.35 -60.69 66 10 SER A 2 ? ? -56.69 174.26 67 10 SER A 6 ? ? -34.61 135.58 68 10 CYS A 10 ? ? -49.61 164.40 69 10 CYS A 15 ? ? -34.15 98.31 70 10 THR A 21 ? ? -49.56 175.81 71 10 ARG A 22 ? ? -34.52 101.46 72 10 CYS A 27 ? ? -92.21 44.63 73 10 ASP A 29 ? ? -77.29 47.52 74 10 ASP A 30 ? ? -132.00 -37.76 75 10 CYS A 38 ? ? -48.40 150.17 76 10 SER A 50 ? ? -171.98 137.91 77 10 SER A 55 ? ? -35.14 126.15 78 11 TRP A 8 ? ? -108.73 41.95 79 11 CYS A 15 ? ? -34.14 103.56 80 11 CYS A 27 ? ? -89.80 40.29 81 11 CYS A 37 ? ? -34.49 119.24 82 11 CYS A 38 ? ? -43.78 154.84 83 11 SER A 50 ? ? -36.56 135.17 84 11 PRO A 53 ? ? -69.75 2.84 85 12 TRP A 8 ? ? -102.18 42.95 86 12 CYS A 15 ? ? -38.35 116.00 87 12 ARG A 19 ? ? -36.66 113.84 88 12 LEU A 20 ? ? -47.46 174.85 89 12 ARG A 22 ? ? 38.63 43.56 90 12 CYS A 27 ? ? -88.45 43.05 91 12 CYS A 38 ? ? -35.03 152.05 92 12 ASN A 40 ? ? -97.71 45.20 93 12 PRO A 53 ? ? -69.69 -175.69 94 13 SER A 6 ? ? -95.48 -62.32 95 13 CYS A 15 ? ? -32.37 93.59 96 13 CYS A 27 ? ? -92.88 44.46 97 13 ASP A 30 ? ? -87.89 36.15 98 13 CYS A 37 ? ? -33.92 115.21 99 13 ASN A 40 ? ? -95.31 35.47 100 13 CYS A 45 ? ? -72.30 -70.38 101 13 PRO A 53 ? ? -69.78 86.66 102 14 SER A 3 ? ? -106.07 -62.29 103 14 CYS A 15 ? ? -34.42 105.52 104 14 CYS A 27 ? ? -90.10 42.43 105 14 LYS A 49 ? ? -93.51 42.13 106 14 SER A 55 ? ? -34.74 135.03 107 15 SER A 6 ? ? -52.37 97.27 108 15 TRP A 8 ? ? -101.09 41.03 109 15 ARG A 22 ? ? 34.40 40.80 110 15 CYS A 27 ? ? -103.64 40.26 111 15 ASP A 29 ? ? -83.68 36.17 112 16 CYS A 15 ? ? -34.50 133.18 113 16 LEU A 20 ? ? -83.96 36.88 114 16 THR A 21 ? ? -51.99 101.76 115 16 CYS A 27 ? ? -82.17 40.01 116 16 ASP A 30 ? ? -37.92 -33.26 117 16 CYS A 38 ? ? -36.31 149.16 118 16 ASN A 40 ? ? -110.02 51.60 119 16 GLN A 46 ? ? -63.80 81.66 120 16 PRO A 53 ? ? -69.76 2.74 121 16 SER A 55 ? ? -90.73 42.19 122 17 CYS A 15 ? ? -44.03 99.30 123 17 ARG A 22 ? ? -81.50 43.79 124 17 CYS A 27 ? ? -88.16 37.40 125 17 CYS A 37 ? ? -36.57 129.19 126 17 CYS A 38 ? ? -43.97 168.56 127 17 ASN A 40 ? ? -115.02 55.39 128 17 GLU A 48 ? ? -59.02 100.23 129 17 SER A 51 ? ? -64.09 90.72 130 18 CYS A 15 ? ? -33.13 93.48 131 18 ARG A 19 ? ? -171.65 110.14 132 18 ASN A 40 ? ? -106.20 40.35 133 18 LYS A 49 ? ? -68.17 83.00 134 18 PRO A 53 ? ? -69.71 2.74 135 18 SER A 54 ? ? -34.37 109.03 136 19 SER A 5 ? ? 39.34 43.27 137 19 LYS A 12 ? ? -52.09 -70.52 138 19 CYS A 15 ? ? -33.29 94.70 139 19 ARG A 22 ? ? 30.72 39.12 140 19 CYS A 27 ? ? -85.24 41.76 141 19 CYS A 38 ? ? -59.55 172.26 142 20 CYS A 15 ? ? -34.45 109.34 143 20 ARG A 19 ? ? -34.57 144.86 144 20 THR A 21 ? ? -101.62 -62.50 145 20 ARG A 22 ? ? -69.97 81.31 146 20 SER A 23 ? ? -171.37 136.77 147 20 CYS A 27 ? ? -99.47 39.87 148 20 ASN A 40 ? ? -105.38 40.89 149 20 GLN A 46 ? ? -83.09 43.70 150 20 PRO A 53 ? ? -69.75 2.84 151 20 SER A 54 ? ? -59.42 101.28 #