data_2YU6 # _entry.id 2YU6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YU6 pdb_00002yu6 10.2210/pdb2yu6/pdb RCSB RCSB027138 ? ? WWPDB D_1000027138 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001001522.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YU6 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-04-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Endo, R.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Shirouzu, M.' 5 'Tarada, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the YTH domain in YTH domain-containing protein 2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Endo, R.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Shirouzu, M.' 5 ? primary 'Tarada, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'YTH domain-containing protein 2' _entity.formula_weight 16138.065 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'YTH domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDW GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDW GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001001522.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 VAL n 1 9 ARG n 1 10 TYR n 1 11 PHE n 1 12 ILE n 1 13 MET n 1 14 LYS n 1 15 SER n 1 16 SER n 1 17 ASN n 1 18 LEU n 1 19 ARG n 1 20 ASN n 1 21 LEU n 1 22 GLU n 1 23 ILE n 1 24 SER n 1 25 GLN n 1 26 GLN n 1 27 LYS n 1 28 GLY n 1 29 ILE n 1 30 TRP n 1 31 SER n 1 32 THR n 1 33 THR n 1 34 PRO n 1 35 SER n 1 36 ASN n 1 37 GLU n 1 38 ARG n 1 39 LYS n 1 40 LEU n 1 41 ASN n 1 42 ARG n 1 43 ALA n 1 44 PHE n 1 45 TRP n 1 46 GLU n 1 47 SER n 1 48 SER n 1 49 ILE n 1 50 VAL n 1 51 TYR n 1 52 LEU n 1 53 VAL n 1 54 PHE n 1 55 SER n 1 56 VAL n 1 57 GLN n 1 58 GLY n 1 59 SER n 1 60 GLY n 1 61 HIS n 1 62 PHE n 1 63 GLN n 1 64 GLY n 1 65 PHE n 1 66 SER n 1 67 ARG n 1 68 MET n 1 69 SER n 1 70 SER n 1 71 GLU n 1 72 ILE n 1 73 GLY n 1 74 ARG n 1 75 GLU n 1 76 LYS n 1 77 SER n 1 78 GLN n 1 79 ASP n 1 80 TRP n 1 81 GLY n 1 82 SER n 1 83 ALA n 1 84 GLY n 1 85 LEU n 1 86 GLY n 1 87 GLY n 1 88 VAL n 1 89 PHE n 1 90 LYS n 1 91 VAL n 1 92 GLU n 1 93 TRP n 1 94 ILE n 1 95 ARG n 1 96 LYS n 1 97 GLU n 1 98 SER n 1 99 LEU n 1 100 PRO n 1 101 PHE n 1 102 GLN n 1 103 PHE n 1 104 ALA n 1 105 HIS n 1 106 HIS n 1 107 LEU n 1 108 LEU n 1 109 ASN n 1 110 PRO n 1 111 TRP n 1 112 ASN n 1 113 ASP n 1 114 ASN n 1 115 LYS n 1 116 LYS n 1 117 VAL n 1 118 GLN n 1 119 ILE n 1 120 SER n 1 121 ARG n 1 122 ASP n 1 123 GLY n 1 124 GLN n 1 125 GLU n 1 126 LEU n 1 127 GLU n 1 128 PRO n 1 129 GLN n 1 130 VAL n 1 131 GLY n 1 132 GLU n 1 133 GLN n 1 134 LEU n 1 135 LEU n 1 136 GLN n 1 137 LEU n 1 138 TRP n 1 139 GLU n 1 140 ARG n 1 141 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene YTHDC2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060508-16 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YTDC2_HUMAN _struct_ref.pdbx_db_accession Q9H6S0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGG VFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL ; _struct_ref.pdbx_align_begin 529 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YU6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 141 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9H6S0 _struct_ref_seq.db_align_beg 529 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 662 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YU6 GLY A 1 ? UNP Q9H6S0 ? ? 'expression tag' 1 1 1 2YU6 SER A 2 ? UNP Q9H6S0 ? ? 'expression tag' 2 2 1 2YU6 SER A 3 ? UNP Q9H6S0 ? ? 'expression tag' 3 3 1 2YU6 GLY A 4 ? UNP Q9H6S0 ? ? 'expression tag' 4 4 1 2YU6 SER A 5 ? UNP Q9H6S0 ? ? 'expression tag' 5 5 1 2YU6 SER A 6 ? UNP Q9H6S0 ? ? 'expression tag' 6 6 1 2YU6 GLY A 7 ? UNP Q9H6S0 ? ? 'expression tag' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.0mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YU6 _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.entry_id 2YU6 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YU6 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 2YU6 _exptl.crystals_number ? # _struct.entry_id 2YU6 _struct.title 'Solution structure of the YTH domain in YTH domain-containing protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YU6 _struct_keywords.text ;YTH domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 19 ? GLN A 26 ? ARG A 19 GLN A 26 1 ? 8 HELX_P HELX_P2 2 GLU A 37 ? GLU A 46 ? GLU A 37 GLU A 46 1 ? 10 HELX_P HELX_P3 3 PHE A 101 ? ALA A 104 ? PHE A 101 ALA A 104 1 ? 4 HELX_P HELX_P4 4 VAL A 130 ? ARG A 140 ? VAL A 130 ARG A 140 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 29 ? SER A 31 ? ILE A 29 SER A 31 A 2 VAL A 88 ? ARG A 95 ? VAL A 88 ARG A 95 A 3 GLY A 64 ? MET A 68 ? GLY A 64 MET A 68 A 4 VAL A 50 ? VAL A 56 ? VAL A 50 VAL A 56 A 5 ARG A 9 ? SER A 15 ? ARG A 9 SER A 15 A 6 GLN A 124 ? LEU A 126 ? GLN A 124 LEU A 126 B 1 HIS A 61 ? PHE A 62 ? HIS A 61 PHE A 62 B 2 LEU A 99 ? PRO A 100 ? LEU A 99 PRO A 100 C 1 LEU A 108 ? ASN A 109 ? LEU A 108 ASN A 109 C 2 LYS A 115 ? LYS A 116 ? LYS A 115 LYS A 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 30 ? N TRP A 30 O PHE A 89 ? O PHE A 89 A 2 3 O GLU A 92 ? O GLU A 92 N ARG A 67 ? N ARG A 67 A 3 4 O MET A 68 ? O MET A 68 N VAL A 50 ? N VAL A 50 A 4 5 O SER A 55 ? O SER A 55 N SER A 15 ? N SER A 15 A 5 6 N TYR A 10 ? N TYR A 10 O LEU A 126 ? O LEU A 126 B 1 2 N PHE A 62 ? N PHE A 62 O LEU A 99 ? O LEU A 99 C 1 2 N ASN A 109 ? N ASN A 109 O LYS A 115 ? O LYS A 115 # _atom_sites.entry_id 2YU6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 HIS 61 61 61 HIS HIS A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 TRP 80 80 80 TRP TRP A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 TRP 93 93 93 TRP TRP A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 PRO 128 128 128 PRO PRO A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 GLN 136 136 136 GLN GLN A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 TRP 138 138 138 TRP TRP A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 LEU 141 141 141 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 34 ? ? -69.80 3.56 2 1 SER A 59 ? ? -38.56 134.30 3 1 GLN A 63 ? ? -47.82 -19.90 4 1 ARG A 74 ? ? -38.08 -38.58 5 1 GLN A 102 ? ? -37.49 -36.68 6 1 PRO A 110 ? ? -69.68 3.95 7 1 ASN A 114 ? ? 32.96 49.44 8 1 LYS A 116 ? ? -37.44 142.62 9 1 GLN A 118 ? ? -37.22 -39.37 10 1 ILE A 119 ? ? -68.40 71.81 11 2 ASN A 20 ? ? -38.28 -38.85 12 2 PRO A 34 ? ? -69.77 4.32 13 2 PRO A 110 ? ? -69.74 1.15 14 2 ASN A 114 ? ? 37.19 33.06 15 3 PRO A 34 ? ? -69.77 3.49 16 3 GLN A 63 ? ? -48.18 -19.46 17 3 GLN A 78 ? ? -103.33 -61.06 18 3 PRO A 110 ? ? -69.75 3.17 19 3 ASP A 113 ? ? 74.85 46.56 20 3 ASN A 114 ? ? 34.21 34.07 21 3 LYS A 116 ? ? -36.63 147.30 22 3 GLN A 118 ? ? -39.46 -31.95 23 4 PRO A 34 ? ? -69.79 2.28 24 4 LYS A 39 ? ? -64.23 -72.15 25 4 LEU A 40 ? ? -39.84 -39.14 26 4 SER A 59 ? ? -34.39 150.63 27 4 TRP A 80 ? ? -171.06 137.29 28 4 ILE A 94 ? ? -93.97 -61.87 29 4 GLN A 118 ? ? -34.61 -39.78 30 5 SER A 5 ? ? -39.11 156.77 31 5 SER A 6 ? ? -161.23 106.12 32 5 PRO A 34 ? ? -69.79 5.24 33 5 ARG A 38 ? ? -34.23 -39.13 34 5 TRP A 80 ? ? -170.45 136.80 35 5 ASN A 114 ? ? 35.84 37.73 36 5 ILE A 119 ? ? -66.70 72.36 37 6 SER A 6 ? ? -99.32 37.26 38 6 PRO A 34 ? ? -69.77 2.81 39 6 LYS A 39 ? ? -69.90 -72.98 40 6 SER A 59 ? ? -34.59 141.03 41 6 ILE A 94 ? ? -106.67 -60.87 42 6 GLN A 102 ? ? -39.02 -34.67 43 6 ASN A 112 ? ? -102.66 58.60 44 7 SER A 2 ? ? 35.09 52.95 45 7 SER A 5 ? ? -57.15 83.48 46 7 PRO A 34 ? ? -69.75 2.66 47 7 ARG A 38 ? ? -43.73 -72.80 48 7 GLU A 75 ? ? -39.77 119.48 49 7 ILE A 94 ? ? -100.83 -60.11 50 7 PRO A 110 ? ? -69.74 1.55 51 7 LYS A 116 ? ? -38.77 148.30 52 7 GLN A 118 ? ? -34.53 -34.31 53 7 PRO A 128 ? ? -69.75 5.97 54 7 GLN A 136 ? ? -48.80 -18.89 55 8 ASN A 20 ? ? -39.44 -39.77 56 8 SER A 59 ? ? -34.57 150.95 57 8 GLU A 75 ? ? -35.83 124.73 58 8 ASP A 79 ? ? -48.12 96.63 59 8 ASP A 113 ? ? 70.57 44.02 60 8 ASN A 114 ? ? 35.52 32.10 61 9 GLN A 26 ? ? -91.79 -60.45 62 9 PRO A 34 ? ? -69.81 1.40 63 9 PRO A 110 ? ? -69.76 1.83 64 9 ASN A 114 ? ? 41.47 29.68 65 9 GLN A 118 ? ? -39.52 -35.08 66 10 GLN A 26 ? ? -97.81 -62.56 67 10 PRO A 34 ? ? -69.76 4.48 68 10 ARG A 38 ? ? -34.29 -34.85 69 10 ASP A 79 ? ? -47.63 105.30 70 10 LEU A 85 ? ? -41.45 160.85 71 10 ILE A 94 ? ? -92.94 -62.13 72 10 ASN A 114 ? ? 36.61 35.98 73 10 GLN A 118 ? ? -39.96 -30.36 74 11 PRO A 34 ? ? -69.74 0.20 75 11 PHE A 101 ? ? -36.55 -35.46 76 11 ASN A 114 ? ? 35.95 37.04 77 11 GLN A 118 ? ? -36.29 -39.99 78 11 ILE A 119 ? ? -67.84 72.55 79 12 PRO A 34 ? ? -69.78 4.39 80 12 ARG A 38 ? ? -35.62 -72.68 81 12 SER A 77 ? ? -56.92 177.76 82 12 ASP A 79 ? ? -39.73 113.66 83 12 ASN A 114 ? ? 36.83 30.46 84 13 GLN A 26 ? ? -99.50 -60.47 85 13 PRO A 34 ? ? -69.81 4.77 86 13 ARG A 38 ? ? -35.39 -36.07 87 13 SER A 59 ? ? -171.94 133.64 88 13 GLN A 63 ? ? -49.72 -18.29 89 13 ARG A 74 ? ? -33.48 -35.18 90 13 GLN A 78 ? ? -121.52 -57.18 91 13 LEU A 85 ? ? -41.31 160.60 92 13 ASN A 114 ? ? 34.91 32.38 93 14 SER A 2 ? ? 38.49 41.11 94 14 ARG A 38 ? ? -42.20 -73.67 95 14 GLN A 63 ? ? -48.06 -19.59 96 14 LEU A 85 ? ? -42.09 163.87 97 14 PRO A 110 ? ? -69.74 3.45 98 14 ASN A 114 ? ? 33.73 45.60 99 15 SER A 2 ? ? -51.19 104.15 100 15 SER A 3 ? ? -68.64 82.75 101 15 SER A 5 ? ? -91.61 45.44 102 15 PRO A 34 ? ? -69.78 4.42 103 15 PRO A 110 ? ? -69.73 4.23 104 15 ASN A 114 ? ? 34.31 39.53 105 15 LYS A 116 ? ? -39.56 132.86 106 15 ILE A 119 ? ? -68.78 70.31 107 16 GLN A 26 ? ? -98.76 -61.16 108 16 PRO A 34 ? ? -69.73 1.19 109 16 ARG A 38 ? ? -33.28 -34.63 110 16 SER A 59 ? ? -35.46 137.34 111 16 GLU A 92 ? ? -101.75 77.29 112 16 ILE A 94 ? ? -104.89 -60.29 113 16 ASN A 112 ? ? -111.93 51.38 114 16 ASN A 114 ? ? 36.56 37.35 115 17 ASN A 20 ? ? -38.68 -34.13 116 17 PRO A 34 ? ? -69.78 4.76 117 17 ARG A 38 ? ? -33.40 -36.07 118 17 LYS A 39 ? ? -72.88 -70.04 119 17 ARG A 74 ? ? -37.87 -36.26 120 17 PRO A 110 ? ? -69.77 3.14 121 17 ASN A 112 ? ? -117.41 70.25 122 17 LYS A 116 ? ? -44.78 157.30 123 18 GLN A 26 ? ? -98.87 -61.01 124 18 PRO A 34 ? ? -69.80 4.34 125 18 GLN A 57 ? ? 32.42 36.02 126 18 GLN A 63 ? ? -39.38 -26.38 127 18 MET A 68 ? ? -39.98 122.64 128 18 ARG A 74 ? ? -37.16 -31.83 129 18 ASP A 79 ? ? -52.41 107.17 130 18 LEU A 85 ? ? -41.24 152.49 131 18 PRO A 110 ? ? -69.77 3.49 132 18 ASN A 114 ? ? 40.64 24.99 133 18 LYS A 116 ? ? -34.89 152.47 134 19 PRO A 34 ? ? -69.79 0.93 135 19 SER A 59 ? ? -38.68 109.32 136 19 ASP A 79 ? ? -42.35 106.15 137 19 LEU A 85 ? ? -44.85 159.72 138 19 PRO A 110 ? ? -69.74 2.47 139 19 ASN A 112 ? ? -117.90 61.72 140 20 PRO A 34 ? ? -69.73 3.26 141 20 ARG A 38 ? ? -38.59 -34.95 142 20 MET A 68 ? ? -39.29 125.61 143 20 ASP A 79 ? ? -52.32 108.74 144 20 GLN A 102 ? ? -48.76 -19.91 145 20 PRO A 110 ? ? -69.79 4.02 146 20 ASN A 114 ? ? 33.74 50.79 147 20 ILE A 119 ? ? -65.91 72.77 #