HEADER IMMUNE SYSTEM 06-APR-07 2YUZ TITLE SOLUTION STRUCTURE OF 4TH IMMUNOGLOBULIN DOMAIN OF SLOW TYPE MYOSIN- TITLE 2 BINDING PROTEIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-BINDING PROTEIN C, SLOW-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IMMUNOGLOBULIN DOMAIN; COMPND 5 SYNONYM: SLOW MYBP-C, C-PROTEIN, SKELETAL MUSCLE SLOW ISOFORM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYBPC1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050322-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS IMMUNOGLOBULIN DOMAIN, SLOW-TYPE MYOSIN-BINDING PROTEIN C, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.N.NIRAULA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YUZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YUZ 1 VERSN REVDAT 1 08-APR-08 2YUZ 0 JRNL AUTH T.N.NIRAULA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF 4TH IMMUNOGLOBULIN DOMAIN OF SLOW TYPE JRNL TITL 2 MYOSIN-BINDING PROTEIN C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YUZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027167. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.34MM SAMPLE U-15N, 13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -51.11 -123.62 REMARK 500 1 LYS A 23 158.40 -43.11 REMARK 500 1 SER A 32 46.00 -80.30 REMARK 500 1 ARG A 59 44.01 -108.13 REMARK 500 1 ALA A 68 96.04 -60.83 REMARK 500 2 LEU A 21 142.82 -35.73 REMARK 500 2 LYS A 23 164.47 -45.44 REMARK 500 2 ASN A 34 75.93 -109.72 REMARK 500 2 ASP A 50 -33.91 -35.56 REMARK 500 2 SER A 95 114.30 -164.22 REMARK 500 2 PRO A 97 97.44 -69.80 REMARK 500 3 LYS A 23 177.69 -53.73 REMARK 500 3 SER A 32 46.35 -93.95 REMARK 500 3 ASN A 42 42.68 36.12 REMARK 500 3 SER A 99 112.29 -163.89 REMARK 500 4 SER A 2 -62.69 -108.98 REMARK 500 4 SER A 5 39.03 -87.18 REMARK 500 4 LYS A 23 178.45 -56.53 REMARK 500 4 ASP A 50 -36.97 -35.72 REMARK 500 5 LEU A 21 132.15 -35.03 REMARK 500 5 ASN A 34 75.39 -117.03 REMARK 500 5 ALA A 68 79.81 -68.14 REMARK 500 5 VAL A 85 150.28 -35.34 REMARK 500 5 PRO A 97 1.77 -69.78 REMARK 500 6 SER A 3 39.91 -86.24 REMARK 500 6 LEU A 11 -61.46 -95.46 REMARK 500 6 ASP A 16 142.47 -34.57 REMARK 500 6 LYS A 23 171.31 -55.83 REMARK 500 6 ASN A 34 78.92 -108.00 REMARK 500 6 ASN A 42 40.04 37.23 REMARK 500 6 ASP A 50 -30.07 -37.43 REMARK 500 7 LYS A 9 77.97 -112.84 REMARK 500 7 LEU A 11 -64.02 -94.43 REMARK 500 7 LEU A 14 173.23 -52.43 REMARK 500 7 ASP A 16 131.04 -38.27 REMARK 500 7 SER A 32 36.32 -97.24 REMARK 500 7 ASN A 34 53.93 -104.91 REMARK 500 7 ASN A 42 35.64 38.88 REMARK 500 7 PRO A 45 95.93 -69.77 REMARK 500 7 SER A 98 147.80 -36.72 REMARK 500 8 ASP A 16 134.53 -37.08 REMARK 500 8 ASN A 20 174.86 -58.31 REMARK 500 8 SER A 32 45.69 -93.05 REMARK 500 8 ASN A 34 51.21 -115.10 REMARK 500 8 ASN A 42 40.22 35.88 REMARK 500 8 ASN A 84 50.41 -113.32 REMARK 500 9 SER A 32 48.54 -83.54 REMARK 500 9 ASN A 42 40.22 37.14 REMARK 500 9 GLU A 73 109.99 -58.76 REMARK 500 9 ASN A 84 67.32 -114.47 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000567.5 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SWISSPROT IS VARIANT AT THIS POSITION DBREF 2YUZ A 8 94 UNP Q00872 MYPC1_HUMAN 433 519 SEQADV 2YUZ GLY A 1 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 2 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 3 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLY A 4 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 5 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 6 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLY A 7 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLN A 56 UNP Q00872 HIS 481 SEE REMARK 999 SEQADV 2YUZ SER A 95 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLY A 96 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ PRO A 97 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 98 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 99 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLY A 100 UNP Q00872 EXPRESSION TAG SEQRES 1 A 100 GLY SER SER GLY SER SER GLY LEU LYS ILE LEU THR PRO SEQRES 2 A 100 LEU THR ASP GLN THR VAL ASN LEU GLY LYS GLU ILE CYS SEQRES 3 A 100 LEU LYS CYS GLU ILE SER GLU ASN ILE PRO GLY LYS TRP SEQRES 4 A 100 THR LYS ASN GLY LEU PRO VAL GLN GLU SER ASP ARG LEU SEQRES 5 A 100 LYS VAL VAL GLN LYS GLY ARG ILE HIS LYS LEU VAL ILE SEQRES 6 A 100 ALA ASN ALA LEU THR GLU ASP GLU GLY ASP TYR VAL PHE SEQRES 7 A 100 ALA PRO ASP ALA TYR ASN VAL THR LEU PRO ALA LYS VAL SEQRES 8 A 100 HIS VAL ILE SER GLY PRO SER SER GLY HELIX 1 1 LEU A 69 GLU A 73 5 5 SHEET 1 A 5 GLN A 17 ASN A 20 0 SHEET 2 A 5 LEU A 87 ILE A 94 1 O LYS A 90 N GLN A 17 SHEET 3 A 5 ASP A 75 PRO A 80 -1 N PHE A 78 O LEU A 87 SHEET 4 A 5 GLY A 37 LYS A 41 -1 N LYS A 38 O ALA A 79 SHEET 5 A 5 LEU A 44 PRO A 45 -1 O LEU A 44 N LYS A 41 SHEET 1 B 3 LEU A 27 GLU A 30 0 SHEET 2 B 3 ILE A 60 ILE A 65 -1 O HIS A 61 N CYS A 29 SHEET 3 B 3 LEU A 52 GLN A 56 -1 N VAL A 55 O LYS A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1