data_2YWA # _entry.id 2YWA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YWA pdb_00002ywa 10.2210/pdb2ywa/pdb RCSB RCSB027214 ? ? WWPDB D_1000027214 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1WTY 'other space group sturucture' unspecified TargetDB ttk003001902.2 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YWA _pdbx_database_status.recvd_initial_deposition_date 2007-04-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kitamura, Y.' 1 'Yokoyama, S.' 2 'Kuramitsu, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title ;Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kitamura, Y.' 1 ? primary 'Yokoyama, S.' 2 ? primary 'Kuramitsu, S.' 3 ? # _cell.entry_id 2YWA _cell.length_a 121.760 _cell.length_b 121.760 _cell.length_c 322.560 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YWA _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Hypothetical protein TTHA0048' _entity.formula_weight 14045.812 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'uncharacterized conserved protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWL E(MSE)LELRNLTNHTYDEALAERIYAELPKALERFQELLRRLEEPA ; _entity_poly.pdbx_seq_one_letter_code_can ;MASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLE LRNLTNHTYDEALAERIYAELPKALERFQELLRRLEEPA ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ttk003001902.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ALA n 1 3 SER n 1 4 LEU n 1 5 ALA n 1 6 ARG n 1 7 ALA n 1 8 VAL n 1 9 GLU n 1 10 ARG n 1 11 LEU n 1 12 LYS n 1 13 ALA n 1 14 ALA n 1 15 LEU n 1 16 GLU n 1 17 ARG n 1 18 PRO n 1 19 LYS n 1 20 ASP n 1 21 GLU n 1 22 PHE n 1 23 ILE n 1 24 ARG n 1 25 ASP n 1 26 SER n 1 27 ALA n 1 28 ILE n 1 29 GLN n 1 30 ARG n 1 31 PHE n 1 32 GLU n 1 33 PHE n 1 34 THR n 1 35 PHE n 1 36 GLU n 1 37 LEU n 1 38 ALA n 1 39 TRP n 1 40 LYS n 1 41 THR n 1 42 LEU n 1 43 LYS n 1 44 THR n 1 45 PHE n 1 46 LEU n 1 47 GLU n 1 48 LEU n 1 49 GLN n 1 50 GLY n 1 51 LEU n 1 52 GLU n 1 53 ALA n 1 54 ARG n 1 55 SER n 1 56 PRO n 1 57 ARG n 1 58 ALA n 1 59 ALA n 1 60 ILE n 1 61 ARG n 1 62 GLY n 1 63 ALA n 1 64 PHE n 1 65 GLN n 1 66 VAL n 1 67 GLY n 1 68 LEU n 1 69 LEU n 1 70 PRO n 1 71 GLU n 1 72 ASP n 1 73 PRO n 1 74 PHE n 1 75 TRP n 1 76 LEU n 1 77 GLU n 1 78 MSE n 1 79 LEU n 1 80 GLU n 1 81 LEU n 1 82 ARG n 1 83 ASN n 1 84 LEU n 1 85 THR n 1 86 ASN n 1 87 HIS n 1 88 THR n 1 89 TYR n 1 90 ASP n 1 91 GLU n 1 92 ALA n 1 93 LEU n 1 94 ALA n 1 95 GLU n 1 96 ARG n 1 97 ILE n 1 98 TYR n 1 99 ALA n 1 100 GLU n 1 101 LEU n 1 102 PRO n 1 103 LYS n 1 104 ALA n 1 105 LEU n 1 106 GLU n 1 107 ARG n 1 108 PHE n 1 109 GLN n 1 110 GLU n 1 111 LEU n 1 112 LEU n 1 113 ARG n 1 114 ARG n 1 115 LEU n 1 116 GLU n 1 117 GLU n 1 118 PRO n 1 119 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SM95_THET8 _struct_ref.pdbx_db_accession Q5SM95 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLE LRNLTNHTYDEALAERIYAELPKALERFQELLRRLEEPA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YWA A 1 ? 119 ? Q5SM95 1 ? 119 ? 1 119 2 1 2YWA B 1 ? 119 ? Q5SM95 1 ? 119 ? 1 119 3 1 2YWA C 1 ? 119 ? Q5SM95 1 ? 119 ? 1 119 4 1 2YWA D 1 ? 119 ? Q5SM95 1 ? 119 ? 1 119 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YWA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 6.14 _exptl_crystal.density_percent_sol 79.97 _exptl_crystal.description 'the file contains Friedel pairs' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.7 _exptl_crystal_grow.pdbx_details ;1.5M NaFormate 0.1M Tris-HCl pH8.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS V' _diffrn_detector.pdbx_collection_date 2004-02-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9000 # _reflns.entry_id 2YWA _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.28 _reflns.d_resolution_high 3.2 _reflns.number_obs 44105 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.123 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 3.31 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.451 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.2 _reflns_shell.pdbx_redundancy 19.37 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2340 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2YWA _refine.ls_number_reflns_obs 44078 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 216963.24 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.13 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2218 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.7 _refine.aniso_B[1][1] 5.02 _refine.aniso_B[2][2] 5.02 _refine.aniso_B[3][3] -10.04 _refine.aniso_B[1][2] 21.68 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.383684 _refine.solvent_model_param_bsol 30.7125 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'the file contains Friedel pairs' _refine.pdbx_starting_model 'PDB ENTRY 1WTY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2YWA _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.43 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.39 _refine_analyze.Luzzati_sigma_a_free 0.43 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3815 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3815 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 44.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.89 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.40 _refine_ls_shell.number_reflns_R_work 6981 _refine_ls_shell.R_factor_R_work 0.272 _refine_ls_shell.percent_reflns_obs 99.8 _refine_ls_shell.R_factor_R_free 0.288 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free 354 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file protein_rep.param _pdbx_xplor_file.topol_file protein.top _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2YWA _struct.title 'Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YWA _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;uncharacterized conserved protein, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? ARG A 17 ? SER A 3 ARG A 17 1 ? 15 HELX_P HELX_P2 2 ASP A 20 ? GLN A 49 ? ASP A 20 GLN A 49 1 ? 30 HELX_P HELX_P3 3 SER A 55 ? VAL A 66 ? SER A 55 VAL A 66 1 ? 12 HELX_P HELX_P4 4 PRO A 73 ? ASN A 83 ? PRO A 73 ASN A 83 1 ? 11 HELX_P HELX_P5 5 LEU A 84 ? THR A 88 ? LEU A 84 THR A 88 5 ? 5 HELX_P HELX_P6 6 ASP A 90 ? ALA A 99 ? ASP A 90 ALA A 99 1 ? 10 HELX_P HELX_P7 7 GLU A 100 ? LEU A 115 ? GLU A 100 LEU A 115 1 ? 16 HELX_P HELX_P8 8 SER B 3 ? ARG B 17 ? SER B 3 ARG B 17 1 ? 15 HELX_P HELX_P9 9 ASP B 20 ? GLY B 50 ? ASP B 20 GLY B 50 1 ? 31 HELX_P HELX_P10 10 SER B 55 ? VAL B 66 ? SER B 55 VAL B 66 1 ? 12 HELX_P HELX_P11 11 PRO B 73 ? ASN B 83 ? PRO B 73 ASN B 83 1 ? 11 HELX_P HELX_P12 12 LEU B 84 ? THR B 88 ? LEU B 84 THR B 88 5 ? 5 HELX_P HELX_P13 13 ASP B 90 ? LEU B 115 ? ASP B 90 LEU B 115 1 ? 26 HELX_P HELX_P14 14 SER C 3 ? ARG C 17 ? SER C 3 ARG C 17 1 ? 15 HELX_P HELX_P15 15 ASP C 20 ? GLY C 50 ? ASP C 20 GLY C 50 1 ? 31 HELX_P HELX_P16 16 SER C 55 ? VAL C 66 ? SER C 55 VAL C 66 1 ? 12 HELX_P HELX_P17 17 PRO C 73 ? THR C 85 ? PRO C 73 THR C 85 1 ? 13 HELX_P HELX_P18 18 ASN C 86 ? THR C 88 ? ASN C 86 THR C 88 5 ? 3 HELX_P HELX_P19 19 ASP C 90 ? ALA C 99 ? ASP C 90 ALA C 99 1 ? 10 HELX_P HELX_P20 20 GLU C 100 ? LEU C 115 ? GLU C 100 LEU C 115 1 ? 16 HELX_P HELX_P21 21 SER D 3 ? ARG D 17 ? SER D 3 ARG D 17 1 ? 15 HELX_P HELX_P22 22 ASP D 20 ? GLU D 47 ? ASP D 20 GLU D 47 1 ? 28 HELX_P HELX_P23 23 SER D 55 ? VAL D 66 ? SER D 55 VAL D 66 1 ? 12 HELX_P HELX_P24 24 PRO D 73 ? ASN D 83 ? PRO D 73 ASN D 83 1 ? 11 HELX_P HELX_P25 25 LEU D 84 ? THR D 88 ? LEU D 84 THR D 88 5 ? 5 HELX_P HELX_P26 26 ASP D 90 ? ALA D 99 ? ASP D 90 ALA D 99 1 ? 10 HELX_P HELX_P27 27 GLU D 100 ? LEU D 115 ? GLU D 100 LEU D 115 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 77 C ? ? ? 1_555 A MSE 78 N ? ? A GLU 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 78 C ? ? ? 1_555 A LEU 79 N ? ? A MSE 78 A LEU 79 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? B GLU 77 C ? ? ? 1_555 B MSE 78 N ? ? B GLU 77 B MSE 78 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? B MSE 78 C ? ? ? 1_555 B LEU 79 N ? ? B MSE 78 B LEU 79 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? C GLU 77 C ? ? ? 1_555 C MSE 78 N ? ? C GLU 77 C MSE 78 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? C MSE 78 C ? ? ? 1_555 C LEU 79 N ? ? C MSE 78 C LEU 79 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? D GLU 77 C ? ? ? 1_555 D MSE 78 N ? ? D GLU 77 D MSE 78 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? D MSE 78 C ? ? ? 1_555 D LEU 79 N ? ? D MSE 78 D LEU 79 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2YWA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YWA _atom_sites.fract_transf_matrix[1][1] 0.008213 _atom_sites.fract_transf_matrix[1][2] 0.004742 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009483 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003100 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 TRP 75 75 75 TRP TRP A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 MSE 78 78 78 MSE MSE A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 HIS 87 87 87 HIS HIS A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 GLU 117 117 ? ? ? A . n A 1 118 PRO 118 118 ? ? ? A . n A 1 119 ALA 119 119 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 ARG 6 6 6 ARG ARG B . n B 1 7 ALA 7 7 7 ALA ALA B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 PRO 18 18 18 PRO PRO B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 SER 26 26 26 SER SER B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 GLN 29 29 29 GLN GLN B . n B 1 30 ARG 30 30 30 ARG ARG B . n B 1 31 PHE 31 31 31 PHE PHE B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 PHE 33 33 33 PHE PHE B . n B 1 34 THR 34 34 34 THR THR B . n B 1 35 PHE 35 35 35 PHE PHE B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 LEU 37 37 37 LEU LEU B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 TRP 39 39 39 TRP TRP B . n B 1 40 LYS 40 40 40 LYS LYS B . n B 1 41 THR 41 41 41 THR THR B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 THR 44 44 44 THR THR B . n B 1 45 PHE 45 45 45 PHE PHE B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 GLU 47 47 47 GLU GLU B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 GLN 49 49 49 GLN GLN B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 ARG 54 54 54 ARG ARG B . n B 1 55 SER 55 55 55 SER SER B . n B 1 56 PRO 56 56 56 PRO PRO B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 ALA 58 58 58 ALA ALA B . n B 1 59 ALA 59 59 59 ALA ALA B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 ALA 63 63 63 ALA ALA B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 GLN 65 65 65 GLN GLN B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 LEU 69 69 69 LEU LEU B . n B 1 70 PRO 70 70 70 PRO PRO B . n B 1 71 GLU 71 71 71 GLU GLU B . n B 1 72 ASP 72 72 72 ASP ASP B . n B 1 73 PRO 73 73 73 PRO PRO B . n B 1 74 PHE 74 74 74 PHE PHE B . n B 1 75 TRP 75 75 75 TRP TRP B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 GLU 77 77 77 GLU GLU B . n B 1 78 MSE 78 78 78 MSE MSE B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 GLU 80 80 80 GLU GLU B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 ARG 82 82 82 ARG ARG B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 THR 85 85 85 THR THR B . n B 1 86 ASN 86 86 86 ASN ASN B . n B 1 87 HIS 87 87 87 HIS HIS B . n B 1 88 THR 88 88 88 THR THR B . n B 1 89 TYR 89 89 89 TYR TYR B . n B 1 90 ASP 90 90 90 ASP ASP B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 ALA 92 92 92 ALA ALA B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 GLU 95 95 95 GLU GLU B . n B 1 96 ARG 96 96 96 ARG ARG B . n B 1 97 ILE 97 97 97 ILE ILE B . n B 1 98 TYR 98 98 98 TYR TYR B . n B 1 99 ALA 99 99 99 ALA ALA B . n B 1 100 GLU 100 100 100 GLU GLU B . n B 1 101 LEU 101 101 101 LEU LEU B . n B 1 102 PRO 102 102 102 PRO PRO B . n B 1 103 LYS 103 103 103 LYS LYS B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 LEU 105 105 105 LEU LEU B . n B 1 106 GLU 106 106 106 GLU GLU B . n B 1 107 ARG 107 107 107 ARG ARG B . n B 1 108 PHE 108 108 108 PHE PHE B . n B 1 109 GLN 109 109 109 GLN GLN B . n B 1 110 GLU 110 110 110 GLU GLU B . n B 1 111 LEU 111 111 111 LEU LEU B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 ARG 113 113 113 ARG ARG B . n B 1 114 ARG 114 114 114 ARG ARG B . n B 1 115 LEU 115 115 115 LEU LEU B . n B 1 116 GLU 116 116 116 GLU GLU B . n B 1 117 GLU 117 117 ? ? ? B . n B 1 118 PRO 118 118 ? ? ? B . n B 1 119 ALA 119 119 ? ? ? B . n C 1 1 MSE 1 1 ? ? ? C . n C 1 2 ALA 2 2 ? ? ? C . n C 1 3 SER 3 3 3 SER SER C . n C 1 4 LEU 4 4 4 LEU LEU C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 ARG 6 6 6 ARG ARG C . n C 1 7 ALA 7 7 7 ALA ALA C . n C 1 8 VAL 8 8 8 VAL VAL C . n C 1 9 GLU 9 9 9 GLU GLU C . n C 1 10 ARG 10 10 10 ARG ARG C . n C 1 11 LEU 11 11 11 LEU LEU C . n C 1 12 LYS 12 12 12 LYS LYS C . n C 1 13 ALA 13 13 13 ALA ALA C . n C 1 14 ALA 14 14 14 ALA ALA C . n C 1 15 LEU 15 15 15 LEU LEU C . n C 1 16 GLU 16 16 16 GLU GLU C . n C 1 17 ARG 17 17 17 ARG ARG C . n C 1 18 PRO 18 18 18 PRO PRO C . n C 1 19 LYS 19 19 19 LYS LYS C . n C 1 20 ASP 20 20 20 ASP ASP C . n C 1 21 GLU 21 21 21 GLU GLU C . n C 1 22 PHE 22 22 22 PHE PHE C . n C 1 23 ILE 23 23 23 ILE ILE C . n C 1 24 ARG 24 24 24 ARG ARG C . n C 1 25 ASP 25 25 25 ASP ASP C . n C 1 26 SER 26 26 26 SER SER C . n C 1 27 ALA 27 27 27 ALA ALA C . n C 1 28 ILE 28 28 28 ILE ILE C . n C 1 29 GLN 29 29 29 GLN GLN C . n C 1 30 ARG 30 30 30 ARG ARG C . n C 1 31 PHE 31 31 31 PHE PHE C . n C 1 32 GLU 32 32 32 GLU GLU C . n C 1 33 PHE 33 33 33 PHE PHE C . n C 1 34 THR 34 34 34 THR THR C . n C 1 35 PHE 35 35 35 PHE PHE C . n C 1 36 GLU 36 36 36 GLU GLU C . n C 1 37 LEU 37 37 37 LEU LEU C . n C 1 38 ALA 38 38 38 ALA ALA C . n C 1 39 TRP 39 39 39 TRP TRP C . n C 1 40 LYS 40 40 40 LYS LYS C . n C 1 41 THR 41 41 41 THR THR C . n C 1 42 LEU 42 42 42 LEU LEU C . n C 1 43 LYS 43 43 43 LYS LYS C . n C 1 44 THR 44 44 44 THR THR C . n C 1 45 PHE 45 45 45 PHE PHE C . n C 1 46 LEU 46 46 46 LEU LEU C . n C 1 47 GLU 47 47 47 GLU GLU C . n C 1 48 LEU 48 48 48 LEU LEU C . n C 1 49 GLN 49 49 49 GLN GLN C . n C 1 50 GLY 50 50 50 GLY GLY C . n C 1 51 LEU 51 51 51 LEU LEU C . n C 1 52 GLU 52 52 52 GLU GLU C . n C 1 53 ALA 53 53 53 ALA ALA C . n C 1 54 ARG 54 54 54 ARG ARG C . n C 1 55 SER 55 55 55 SER SER C . n C 1 56 PRO 56 56 56 PRO PRO C . n C 1 57 ARG 57 57 57 ARG ARG C . n C 1 58 ALA 58 58 58 ALA ALA C . n C 1 59 ALA 59 59 59 ALA ALA C . n C 1 60 ILE 60 60 60 ILE ILE C . n C 1 61 ARG 61 61 61 ARG ARG C . n C 1 62 GLY 62 62 62 GLY GLY C . n C 1 63 ALA 63 63 63 ALA ALA C . n C 1 64 PHE 64 64 64 PHE PHE C . n C 1 65 GLN 65 65 65 GLN GLN C . n C 1 66 VAL 66 66 66 VAL VAL C . n C 1 67 GLY 67 67 67 GLY GLY C . n C 1 68 LEU 68 68 68 LEU LEU C . n C 1 69 LEU 69 69 69 LEU LEU C . n C 1 70 PRO 70 70 70 PRO PRO C . n C 1 71 GLU 71 71 71 GLU GLU C . n C 1 72 ASP 72 72 72 ASP ASP C . n C 1 73 PRO 73 73 73 PRO PRO C . n C 1 74 PHE 74 74 74 PHE PHE C . n C 1 75 TRP 75 75 75 TRP TRP C . n C 1 76 LEU 76 76 76 LEU LEU C . n C 1 77 GLU 77 77 77 GLU GLU C . n C 1 78 MSE 78 78 78 MSE MSE C . n C 1 79 LEU 79 79 79 LEU LEU C . n C 1 80 GLU 80 80 80 GLU GLU C . n C 1 81 LEU 81 81 81 LEU LEU C . n C 1 82 ARG 82 82 82 ARG ARG C . n C 1 83 ASN 83 83 83 ASN ASN C . n C 1 84 LEU 84 84 84 LEU LEU C . n C 1 85 THR 85 85 85 THR THR C . n C 1 86 ASN 86 86 86 ASN ASN C . n C 1 87 HIS 87 87 87 HIS HIS C . n C 1 88 THR 88 88 88 THR THR C . n C 1 89 TYR 89 89 89 TYR TYR C . n C 1 90 ASP 90 90 90 ASP ASP C . n C 1 91 GLU 91 91 91 GLU GLU C . n C 1 92 ALA 92 92 92 ALA ALA C . n C 1 93 LEU 93 93 93 LEU LEU C . n C 1 94 ALA 94 94 94 ALA ALA C . n C 1 95 GLU 95 95 95 GLU GLU C . n C 1 96 ARG 96 96 96 ARG ARG C . n C 1 97 ILE 97 97 97 ILE ILE C . n C 1 98 TYR 98 98 98 TYR TYR C . n C 1 99 ALA 99 99 99 ALA ALA C . n C 1 100 GLU 100 100 100 GLU GLU C . n C 1 101 LEU 101 101 101 LEU LEU C . n C 1 102 PRO 102 102 102 PRO PRO C . n C 1 103 LYS 103 103 103 LYS LYS C . n C 1 104 ALA 104 104 104 ALA ALA C . n C 1 105 LEU 105 105 105 LEU LEU C . n C 1 106 GLU 106 106 106 GLU GLU C . n C 1 107 ARG 107 107 107 ARG ARG C . n C 1 108 PHE 108 108 108 PHE PHE C . n C 1 109 GLN 109 109 109 GLN GLN C . n C 1 110 GLU 110 110 110 GLU GLU C . n C 1 111 LEU 111 111 111 LEU LEU C . n C 1 112 LEU 112 112 112 LEU LEU C . n C 1 113 ARG 113 113 113 ARG ARG C . n C 1 114 ARG 114 114 114 ARG ARG C . n C 1 115 LEU 115 115 115 LEU LEU C . n C 1 116 GLU 116 116 116 GLU GLU C . n C 1 117 GLU 117 117 ? ? ? C . n C 1 118 PRO 118 118 ? ? ? C . n C 1 119 ALA 119 119 ? ? ? C . n D 1 1 MSE 1 1 ? ? ? D . n D 1 2 ALA 2 2 2 ALA ALA D . n D 1 3 SER 3 3 3 SER SER D . n D 1 4 LEU 4 4 4 LEU LEU D . n D 1 5 ALA 5 5 5 ALA ALA D . n D 1 6 ARG 6 6 6 ARG ARG D . n D 1 7 ALA 7 7 7 ALA ALA D . n D 1 8 VAL 8 8 8 VAL VAL D . n D 1 9 GLU 9 9 9 GLU GLU D . n D 1 10 ARG 10 10 10 ARG ARG D . n D 1 11 LEU 11 11 11 LEU LEU D . n D 1 12 LYS 12 12 12 LYS LYS D . n D 1 13 ALA 13 13 13 ALA ALA D . n D 1 14 ALA 14 14 14 ALA ALA D . n D 1 15 LEU 15 15 15 LEU LEU D . n D 1 16 GLU 16 16 16 GLU GLU D . n D 1 17 ARG 17 17 17 ARG ARG D . n D 1 18 PRO 18 18 18 PRO PRO D . n D 1 19 LYS 19 19 19 LYS LYS D . n D 1 20 ASP 20 20 20 ASP ASP D . n D 1 21 GLU 21 21 21 GLU GLU D . n D 1 22 PHE 22 22 22 PHE PHE D . n D 1 23 ILE 23 23 23 ILE ILE D . n D 1 24 ARG 24 24 24 ARG ARG D . n D 1 25 ASP 25 25 25 ASP ASP D . n D 1 26 SER 26 26 26 SER SER D . n D 1 27 ALA 27 27 27 ALA ALA D . n D 1 28 ILE 28 28 28 ILE ILE D . n D 1 29 GLN 29 29 29 GLN GLN D . n D 1 30 ARG 30 30 30 ARG ARG D . n D 1 31 PHE 31 31 31 PHE PHE D . n D 1 32 GLU 32 32 32 GLU GLU D . n D 1 33 PHE 33 33 33 PHE PHE D . n D 1 34 THR 34 34 34 THR THR D . n D 1 35 PHE 35 35 35 PHE PHE D . n D 1 36 GLU 36 36 36 GLU GLU D . n D 1 37 LEU 37 37 37 LEU LEU D . n D 1 38 ALA 38 38 38 ALA ALA D . n D 1 39 TRP 39 39 39 TRP TRP D . n D 1 40 LYS 40 40 40 LYS LYS D . n D 1 41 THR 41 41 41 THR THR D . n D 1 42 LEU 42 42 42 LEU LEU D . n D 1 43 LYS 43 43 43 LYS LYS D . n D 1 44 THR 44 44 44 THR THR D . n D 1 45 PHE 45 45 45 PHE PHE D . n D 1 46 LEU 46 46 46 LEU LEU D . n D 1 47 GLU 47 47 47 GLU GLU D . n D 1 48 LEU 48 48 48 LEU LEU D . n D 1 49 GLN 49 49 49 GLN GLN D . n D 1 50 GLY 50 50 50 GLY GLY D . n D 1 51 LEU 51 51 51 LEU LEU D . n D 1 52 GLU 52 52 52 GLU GLU D . n D 1 53 ALA 53 53 53 ALA ALA D . n D 1 54 ARG 54 54 54 ARG ARG D . n D 1 55 SER 55 55 55 SER SER D . n D 1 56 PRO 56 56 56 PRO PRO D . n D 1 57 ARG 57 57 57 ARG ARG D . n D 1 58 ALA 58 58 58 ALA ALA D . n D 1 59 ALA 59 59 59 ALA ALA D . n D 1 60 ILE 60 60 60 ILE ILE D . n D 1 61 ARG 61 61 61 ARG ARG D . n D 1 62 GLY 62 62 62 GLY GLY D . n D 1 63 ALA 63 63 63 ALA ALA D . n D 1 64 PHE 64 64 64 PHE PHE D . n D 1 65 GLN 65 65 65 GLN GLN D . n D 1 66 VAL 66 66 66 VAL VAL D . n D 1 67 GLY 67 67 67 GLY GLY D . n D 1 68 LEU 68 68 68 LEU LEU D . n D 1 69 LEU 69 69 69 LEU LEU D . n D 1 70 PRO 70 70 70 PRO PRO D . n D 1 71 GLU 71 71 71 GLU GLU D . n D 1 72 ASP 72 72 72 ASP ASP D . n D 1 73 PRO 73 73 73 PRO PRO D . n D 1 74 PHE 74 74 74 PHE PHE D . n D 1 75 TRP 75 75 75 TRP TRP D . n D 1 76 LEU 76 76 76 LEU LEU D . n D 1 77 GLU 77 77 77 GLU GLU D . n D 1 78 MSE 78 78 78 MSE MSE D . n D 1 79 LEU 79 79 79 LEU LEU D . n D 1 80 GLU 80 80 80 GLU GLU D . n D 1 81 LEU 81 81 81 LEU LEU D . n D 1 82 ARG 82 82 82 ARG ARG D . n D 1 83 ASN 83 83 83 ASN ASN D . n D 1 84 LEU 84 84 84 LEU LEU D . n D 1 85 THR 85 85 85 THR THR D . n D 1 86 ASN 86 86 86 ASN ASN D . n D 1 87 HIS 87 87 87 HIS HIS D . n D 1 88 THR 88 88 88 THR THR D . n D 1 89 TYR 89 89 89 TYR TYR D . n D 1 90 ASP 90 90 90 ASP ASP D . n D 1 91 GLU 91 91 91 GLU GLU D . n D 1 92 ALA 92 92 92 ALA ALA D . n D 1 93 LEU 93 93 93 LEU LEU D . n D 1 94 ALA 94 94 94 ALA ALA D . n D 1 95 GLU 95 95 95 GLU GLU D . n D 1 96 ARG 96 96 96 ARG ARG D . n D 1 97 ILE 97 97 97 ILE ILE D . n D 1 98 TYR 98 98 98 TYR TYR D . n D 1 99 ALA 99 99 99 ALA ALA D . n D 1 100 GLU 100 100 100 GLU GLU D . n D 1 101 LEU 101 101 101 LEU LEU D . n D 1 102 PRO 102 102 102 PRO PRO D . n D 1 103 LYS 103 103 103 LYS LYS D . n D 1 104 ALA 104 104 104 ALA ALA D . n D 1 105 LEU 105 105 105 LEU LEU D . n D 1 106 GLU 106 106 106 GLU GLU D . n D 1 107 ARG 107 107 107 ARG ARG D . n D 1 108 PHE 108 108 108 PHE PHE D . n D 1 109 GLN 109 109 109 GLN GLN D . n D 1 110 GLU 110 110 110 GLU GLU D . n D 1 111 LEU 111 111 111 LEU LEU D . n D 1 112 LEU 112 112 112 LEU LEU D . n D 1 113 ARG 113 113 113 ARG ARG D . n D 1 114 ARG 114 114 114 ARG ARG D . n D 1 115 LEU 115 115 115 LEU LEU D . n D 1 116 GLU 116 116 116 GLU GLU D . n D 1 117 GLU 117 117 ? ? ? D . n D 1 118 PRO 118 118 ? ? ? D . n D 1 119 ALA 119 119 ? ? ? D . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 78 A MSE 78 ? MET SELENOMETHIONINE 2 B MSE 78 B MSE 78 ? MET SELENOMETHIONINE 3 C MSE 78 C MSE 78 ? MET SELENOMETHIONINE 4 D MSE 78 D MSE 78 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1 C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-11 4 'Structure model' 1 3 2023-10-25 5 'Structure model' 1 4 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_chem_comp_atom.atom_id' 5 5 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data reduction' . ? 2 CrystalClear 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 49 ? ? -100.03 62.19 2 1 LEU A 51 ? ? -40.27 159.89 3 1 VAL A 66 ? ? -65.97 21.94 4 1 LEU A 68 ? ? 10.26 -88.30 5 1 GLU A 71 ? ? -38.52 94.73 6 1 THR A 85 ? ? -39.33 -34.47 7 1 THR A 88 ? ? -68.49 14.93 8 1 LEU B 68 ? ? -67.96 -70.75 9 1 LEU B 115 ? ? -73.91 28.16 10 1 ALA C 53 ? ? -179.17 93.76 11 1 LEU C 68 ? ? -71.11 -70.01 12 1 GLU D 21 ? ? -37.16 -34.41 13 1 VAL D 66 ? ? -59.39 -1.64 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A GLU 117 ? A GLU 117 3 1 Y 1 A PRO 118 ? A PRO 118 4 1 Y 1 A ALA 119 ? A ALA 119 5 1 Y 1 B MSE 1 ? B MSE 1 6 1 Y 1 B GLU 117 ? B GLU 117 7 1 Y 1 B PRO 118 ? B PRO 118 8 1 Y 1 B ALA 119 ? B ALA 119 9 1 Y 1 C MSE 1 ? C MSE 1 10 1 Y 1 C ALA 2 ? C ALA 2 11 1 Y 1 C GLU 117 ? C GLU 117 12 1 Y 1 C PRO 118 ? C PRO 118 13 1 Y 1 C ALA 119 ? C ALA 119 14 1 Y 1 D MSE 1 ? D MSE 1 15 1 Y 1 D GLU 117 ? D GLU 117 16 1 Y 1 D PRO 118 ? D PRO 118 17 1 Y 1 D ALA 119 ? D ALA 119 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MSE N N N N 213 MSE CA C N S 214 MSE C C N N 215 MSE O O N N 216 MSE OXT O N N 217 MSE CB C N N 218 MSE CG C N N 219 MSE SE SE N N 220 MSE CE C N N 221 MSE H H N N 222 MSE H2 H N N 223 MSE HA H N N 224 MSE HXT H N N 225 MSE HB2 H N N 226 MSE HB3 H N N 227 MSE HG2 H N N 228 MSE HG3 H N N 229 MSE HE1 H N N 230 MSE HE2 H N N 231 MSE HE3 H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MSE N CA sing N N 203 MSE N H sing N N 204 MSE N H2 sing N N 205 MSE CA C sing N N 206 MSE CA CB sing N N 207 MSE CA HA sing N N 208 MSE C O doub N N 209 MSE C OXT sing N N 210 MSE OXT HXT sing N N 211 MSE CB CG sing N N 212 MSE CB HB2 sing N N 213 MSE CB HB3 sing N N 214 MSE CG SE sing N N 215 MSE CG HG2 sing N N 216 MSE CG HG3 sing N N 217 MSE SE CE sing N N 218 MSE CE HE1 sing N N 219 MSE CE HE2 sing N N 220 MSE CE HE3 sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1WTY _pdbx_initial_refinement_model.details 'PDB ENTRY 1WTY' #