data_2YXH # _entry.id 2YXH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YXH pdb_00002yxh 10.2210/pdb2yxh/pdb RCSB RCSB027257 ? ? WWPDB D_1000027257 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id tma001000360.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YXH _pdbx_database_status.recvd_initial_deposition_date 2007-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Padmanabhan, B.' 1 'Bessho, Y.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title ;Crystal structure of mazG-related protein from Thermotoga maritima ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Padmanabhan, B.' 1 ? primary 'Bessho, Y.' 2 ? primary 'Yokoyama, S.' 3 ? # _cell.entry_id 2YXH _cell.length_a 74.829 _cell.length_b 56.788 _cell.length_c 61.615 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YXH _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MazG-related protein' 13705.542 2 ? L57MSE ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 water nat water 18.015 229 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)VERLLEIIERSLRKCPWLEKQSIETLLEALASEIEEVAEAVKKNDLANLEEEIGD(MSE)IYDALLVAAVAQRDY GIDLESAIQKVVEKISHRKPWLFWEEKISLEEAEKIWKERKKKI ; _entity_poly.pdbx_seq_one_letter_code_can ;MVERLLEIIERSLRKCPWLEKQSIETLLEALASEIEEVAEAVKKNDLANLEEEIGDMIYDALLVAAVAQRDYGIDLESAI QKVVEKISHRKPWLFWEEKISLEEAEKIWKERKKKI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier tma001000360.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 VAL n 1 3 GLU n 1 4 ARG n 1 5 LEU n 1 6 LEU n 1 7 GLU n 1 8 ILE n 1 9 ILE n 1 10 GLU n 1 11 ARG n 1 12 SER n 1 13 LEU n 1 14 ARG n 1 15 LYS n 1 16 CYS n 1 17 PRO n 1 18 TRP n 1 19 LEU n 1 20 GLU n 1 21 LYS n 1 22 GLN n 1 23 SER n 1 24 ILE n 1 25 GLU n 1 26 THR n 1 27 LEU n 1 28 LEU n 1 29 GLU n 1 30 ALA n 1 31 LEU n 1 32 ALA n 1 33 SER n 1 34 GLU n 1 35 ILE n 1 36 GLU n 1 37 GLU n 1 38 VAL n 1 39 ALA n 1 40 GLU n 1 41 ALA n 1 42 VAL n 1 43 LYS n 1 44 LYS n 1 45 ASN n 1 46 ASP n 1 47 LEU n 1 48 ALA n 1 49 ASN n 1 50 LEU n 1 51 GLU n 1 52 GLU n 1 53 GLU n 1 54 ILE n 1 55 GLY n 1 56 ASP n 1 57 MSE n 1 58 ILE n 1 59 TYR n 1 60 ASP n 1 61 ALA n 1 62 LEU n 1 63 LEU n 1 64 VAL n 1 65 ALA n 1 66 ALA n 1 67 VAL n 1 68 ALA n 1 69 GLN n 1 70 ARG n 1 71 ASP n 1 72 TYR n 1 73 GLY n 1 74 ILE n 1 75 ASP n 1 76 LEU n 1 77 GLU n 1 78 SER n 1 79 ALA n 1 80 ILE n 1 81 GLN n 1 82 LYS n 1 83 VAL n 1 84 VAL n 1 85 GLU n 1 86 LYS n 1 87 ILE n 1 88 SER n 1 89 HIS n 1 90 ARG n 1 91 LYS n 1 92 PRO n 1 93 TRP n 1 94 LEU n 1 95 PHE n 1 96 TRP n 1 97 GLU n 1 98 GLU n 1 99 LYS n 1 100 ILE n 1 101 SER n 1 102 LEU n 1 103 GLU n 1 104 GLU n 1 105 ALA n 1 106 GLU n 1 107 LYS n 1 108 ILE n 1 109 TRP n 1 110 LYS n 1 111 GLU n 1 112 ARG n 1 113 LYS n 1 114 LYS n 1 115 LYS n 1 116 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermotoga maritima' _entity_src_gen.gene_src_strain MSB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus (DE3)-RIL-X' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9WYJ5_THEMA _struct_ref.pdbx_db_accession Q9WYJ5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVERLLEIIERSLRKCPWLEKQSIETLLEALASEIEEVAEAVKKNDLANLEEEIGDLIYDALLVAAVAQRDYGIDLESAI QKVVEKISHRKPWLFWEEKISLEEAEKIWKERKKKI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YXH A 1 ? 116 ? Q9WYJ5 1 ? 116 ? 1 116 2 1 2YXH B 1 ? 116 ? Q9WYJ5 1 ? 116 ? 1 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YXH MSE A 57 ? UNP Q9WYJ5 LEU 57 'engineered mutation' 57 1 2 2YXH MSE B 57 ? UNP Q9WYJ5 LEU 57 'engineered mutation' 57 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YXH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.4 _exptl_crystal_grow.pdbx_details '25% PEG3350, 0.2M MgAcetate, 0.1M Tris-HCl, pH8.4, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97905 1.0 2 0.90000 1.0 3 0.97945 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97905, 0.90000, 0.97945' # _reflns.entry_id 2YXH _reflns.observed_criterion_sigma_F -3 _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50.0 _reflns.number_all 18461 _reflns.number_obs 18408 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.258 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1765 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2YXH _refine.ls_number_reflns_obs 17330 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.74 _refine.ls_R_factor_obs 0.21472 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21205 _refine.ls_R_factor_R_free 0.26312 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 930 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 37.630 _refine.aniso_B[1][1] -3.66 _refine.aniso_B[2][2] 6.15 _refine.aniso_B[3][3] -2.48 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.214 _refine.pdbx_overall_ESU_R_Free 0.188 _refine.overall_SU_ML 0.192 _refine.overall_SU_B 7.620 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1871 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 229 _refine_hist.number_atoms_total 2104 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.030 0.022 ? 1942 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.186 1.983 ? 2625 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.075 5.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.791 25.604 ? 91 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.072 15.000 ? 408 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24.428 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.149 0.200 ? 300 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1406 'X-RAY DIFFRACTION' ? r_nbd_refined 0.264 0.200 ? 1107 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.331 0.200 ? 1385 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.205 0.200 ? 183 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.183 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.217 0.200 ? 32 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.282 0.200 ? 15 'X-RAY DIFFRACTION' ? r_mcbond_it 1.659 1.500 ? 1220 'X-RAY DIFFRACTION' ? r_mcangle_it 2.558 2.000 ? 1887 'X-RAY DIFFRACTION' ? r_scbond_it 4.839 3.000 ? 866 'X-RAY DIFFRACTION' ? r_scangle_it 6.883 4.500 ? 733 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.051 _refine_ls_shell.number_reflns_R_work 1222 _refine_ls_shell.R_factor_R_work 0.318 _refine_ls_shell.percent_reflns_obs 98.85 _refine_ls_shell.R_factor_R_free 0.329 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2YXH _struct.title 'Crystal structure of mazG-related protein from Thermotoga maritima' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YXH _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;TM0360, Left-handed superhelix fold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 1 ? CYS A 16 ? MSE A 1 CYS A 16 1 ? 16 HELX_P HELX_P2 2 CYS A 16 ? LYS A 21 ? CYS A 16 LYS A 21 1 ? 6 HELX_P HELX_P3 3 SER A 23 ? LYS A 44 ? SER A 23 LYS A 44 1 ? 22 HELX_P HELX_P4 4 ASP A 46 ? GLY A 73 ? ASP A 46 GLY A 73 1 ? 28 HELX_P HELX_P5 5 ASP A 75 ? LYS A 91 ? ASP A 75 LYS A 91 1 ? 17 HELX_P HELX_P6 6 PRO A 92 ? TRP A 96 ? PRO A 92 TRP A 96 5 ? 5 HELX_P HELX_P7 7 SER A 101 ? LYS A 114 ? SER A 101 LYS A 114 1 ? 14 HELX_P HELX_P8 8 VAL B 2 ? CYS B 16 ? VAL B 2 CYS B 16 1 ? 15 HELX_P HELX_P9 9 CYS B 16 ? GLN B 22 ? CYS B 16 GLN B 22 1 ? 7 HELX_P HELX_P10 10 SER B 23 ? LYS B 44 ? SER B 23 LYS B 44 1 ? 22 HELX_P HELX_P11 11 ASP B 46 ? GLY B 73 ? ASP B 46 GLY B 73 1 ? 28 HELX_P HELX_P12 12 ASP B 75 ? LYS B 91 ? ASP B 75 LYS B 91 1 ? 17 HELX_P HELX_P13 13 PRO B 92 ? TRP B 96 ? PRO B 92 TRP B 96 5 ? 5 HELX_P HELX_P14 14 SER B 101 ? LYS B 114 ? SER B 101 LYS B 114 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 34 OE2 ? ? ? 1_555 C MG . MG ? ? A GLU 34 A MG 501 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc2 metalc ? ? A GLU 34 OE1 ? ? ? 1_555 D MG . MG ? ? A GLU 34 A MG 502 1_555 ? ? ? ? ? ? ? 2.232 ? ? metalc3 metalc ? ? A GLU 37 OE2 ? ? ? 1_555 D MG . MG ? ? A GLU 37 A MG 502 1_555 ? ? ? ? ? ? ? 1.997 ? ? metalc4 metalc ? ? A GLU 53 OE1 ? ? ? 1_555 D MG . MG ? ? A GLU 53 A MG 502 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc5 metalc ? ? A ASP 56 OD2 ? ? ? 1_555 D MG . MG ? ? A ASP 56 A MG 502 1_555 ? ? ? ? ? ? ? 1.880 ? ? metalc6 metalc ? ? A ASP 60 OD2 ? ? ? 1_555 C MG . MG ? ? A ASP 60 A MG 501 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc7 metalc ? ? B GLU 34 OE2 ? ? ? 1_555 E MG . MG ? ? B GLU 34 B MG 503 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc8 metalc ? ? B GLU 34 OE1 ? ? ? 1_555 F MG . MG ? ? B GLU 34 B MG 504 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc9 metalc ? ? B GLU 37 OE1 ? ? ? 1_555 F MG . MG ? ? B GLU 37 B MG 504 1_555 ? ? ? ? ? ? ? 1.665 ? ? metalc10 metalc ? ? B GLU 53 OE1 ? ? ? 1_555 F MG . MG ? ? B GLU 53 B MG 504 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc11 metalc ? ? B ASP 56 OD2 ? ? ? 1_555 F MG . MG ? ? B ASP 56 B MG 504 1_555 ? ? ? ? ? ? ? 1.918 ? ? metalc12 metalc ? ? B ASP 60 OD2 ? ? ? 1_555 E MG . MG ? ? B ASP 60 B MG 503 1_555 ? ? ? ? ? ? ? 2.278 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 501 ? 6 'BINDING SITE FOR RESIDUE MG A 501' AC2 Software A MG 502 ? 6 'BINDING SITE FOR RESIDUE MG A 502' AC3 Software B MG 503 ? 6 'BINDING SITE FOR RESIDUE MG B 503' AC4 Software B MG 504 ? 6 'BINDING SITE FOR RESIDUE MG B 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 34 ? GLU A 34 . ? 1_555 ? 2 AC1 6 ASP A 60 ? ASP A 60 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH A 569 . ? 1_555 ? 4 AC1 6 HOH G . ? HOH A 607 . ? 1_555 ? 5 AC1 6 HOH G . ? HOH A 608 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH A 609 . ? 1_555 ? 7 AC2 6 GLU A 34 ? GLU A 34 . ? 1_555 ? 8 AC2 6 GLU A 37 ? GLU A 37 . ? 1_555 ? 9 AC2 6 GLU A 53 ? GLU A 53 . ? 1_555 ? 10 AC2 6 ASP A 56 ? ASP A 56 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 605 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 606 . ? 1_555 ? 13 AC3 6 GLU B 34 ? GLU B 34 . ? 1_555 ? 14 AC3 6 ASP B 60 ? ASP B 60 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH B 507 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH B 523 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH B 620 . ? 1_555 ? 18 AC3 6 HOH H . ? HOH B 626 . ? 1_555 ? 19 AC4 6 GLU B 34 ? GLU B 34 . ? 1_555 ? 20 AC4 6 GLU B 37 ? GLU B 37 . ? 1_555 ? 21 AC4 6 GLU B 53 ? GLU B 53 . ? 1_555 ? 22 AC4 6 ASP B 56 ? ASP B 56 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH B 532 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH B 544 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YXH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YXH _atom_sites.fract_transf_matrix[1][1] 0.013364 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017609 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016230 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 MSE 57 57 57 MSE MSE A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 HIS 89 89 89 HIS HIS A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 TRP 93 93 93 TRP TRP A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 TRP 96 96 96 TRP TRP A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 TRP 109 109 109 TRP TRP A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 LYS 115 115 ? ? ? A . n A 1 116 ILE 116 116 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 VAL 2 2 2 VAL ALA B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 ARG 4 4 4 ARG ARG B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 SER 12 12 12 SER SER B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 CYS 16 16 16 CYS CYS B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 TRP 18 18 18 TRP TRP B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 GLU 20 20 20 GLU GLU B . n B 1 21 LYS 21 21 21 LYS LYS B . n B 1 22 GLN 22 22 22 GLN GLN B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 GLU 29 29 29 GLU GLU B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 ALA 32 32 32 ALA ALA B . n B 1 33 SER 33 33 33 SER SER B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 ILE 35 35 35 ILE ILE B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 GLU 37 37 37 GLU GLU B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 GLU 40 40 40 GLU GLU B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 VAL 42 42 42 VAL VAL B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 ASN 45 45 45 ASN ASN B . n B 1 46 ASP 46 46 46 ASP ASP B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 ASN 49 49 49 ASN ASN B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 ASP 56 56 56 ASP ASP B . n B 1 57 MSE 57 57 57 MSE MSE B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 ALA 65 65 65 ALA ALA B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 GLN 69 69 69 GLN GLN B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 ASP 71 71 71 ASP ASP B . n B 1 72 TYR 72 72 72 TYR TYR B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 ILE 74 74 74 ILE ILE B . n B 1 75 ASP 75 75 75 ASP ASP B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 GLU 77 77 77 GLU GLU B . n B 1 78 SER 78 78 78 SER SER B . n B 1 79 ALA 79 79 79 ALA ALA B . n B 1 80 ILE 80 80 80 ILE ILE B . n B 1 81 GLN 81 81 81 GLN GLN B . n B 1 82 LYS 82 82 82 LYS LYS B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 VAL 84 84 84 VAL VAL B . n B 1 85 GLU 85 85 85 GLU GLU B . n B 1 86 LYS 86 86 86 LYS LYS B . n B 1 87 ILE 87 87 87 ILE ILE B . n B 1 88 SER 88 88 88 SER SER B . n B 1 89 HIS 89 89 89 HIS HIS B . n B 1 90 ARG 90 90 90 ARG ARG B . n B 1 91 LYS 91 91 91 LYS LYS B . n B 1 92 PRO 92 92 92 PRO PRO B . n B 1 93 TRP 93 93 93 TRP TRP B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 TRP 96 96 96 TRP TRP B . n B 1 97 GLU 97 97 97 GLU GLU B . n B 1 98 GLU 98 98 98 GLU GLU B . n B 1 99 LYS 99 99 99 LYS LYS B . n B 1 100 ILE 100 100 100 ILE ILE B . n B 1 101 SER 101 101 101 SER SER B . n B 1 102 LEU 102 102 102 LEU LEU B . n B 1 103 GLU 103 103 103 GLU GLU B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 ALA 105 105 105 ALA ALA B . n B 1 106 GLU 106 106 106 GLU GLU B . n B 1 107 LYS 107 107 107 LYS LYS B . n B 1 108 ILE 108 108 108 ILE ILE B . n B 1 109 TRP 109 109 109 TRP TRP B . n B 1 110 LYS 110 110 110 LYS LYS B . n B 1 111 GLU 111 111 111 GLU GLU B . n B 1 112 ARG 112 112 112 ARG ARG B . n B 1 113 LYS 113 113 113 LYS LYS B . n B 1 114 LYS 114 114 114 LYS LYS B . n B 1 115 LYS 115 115 115 LYS ALA B . n B 1 116 ILE 116 116 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 501 1 MG MG A . D 2 MG 1 502 1 MG MG A . E 2 MG 1 503 1 MG MG B . F 2 MG 1 504 1 MG MG B . G 3 HOH 1 503 1 HOH HOH A . G 3 HOH 2 504 4 HOH HOH A . G 3 HOH 3 505 7 HOH HOH A . G 3 HOH 4 506 11 HOH HOH A . G 3 HOH 5 507 13 HOH HOH A . G 3 HOH 6 508 14 HOH HOH A . G 3 HOH 7 509 20 HOH HOH A . G 3 HOH 8 510 25 HOH HOH A . G 3 HOH 9 511 28 HOH HOH A . G 3 HOH 10 512 31 HOH HOH A . G 3 HOH 11 513 35 HOH HOH A . G 3 HOH 12 514 38 HOH HOH A . G 3 HOH 13 515 39 HOH HOH A . G 3 HOH 14 516 44 HOH HOH A . G 3 HOH 15 517 45 HOH HOH A . G 3 HOH 16 518 47 HOH HOH A . G 3 HOH 17 519 50 HOH HOH A . G 3 HOH 18 520 51 HOH HOH A . G 3 HOH 19 521 57 HOH HOH A . G 3 HOH 20 522 59 HOH HOH A . G 3 HOH 21 523 63 HOH HOH A . G 3 HOH 22 524 64 HOH HOH A . G 3 HOH 23 525 66 HOH HOH A . G 3 HOH 24 526 67 HOH HOH A . G 3 HOH 25 527 68 HOH HOH A . G 3 HOH 26 528 69 HOH HOH A . G 3 HOH 27 529 72 HOH HOH A . G 3 HOH 28 530 73 HOH HOH A . G 3 HOH 29 531 74 HOH HOH A . G 3 HOH 30 532 76 HOH HOH A . G 3 HOH 31 533 78 HOH HOH A . G 3 HOH 32 534 79 HOH HOH A . G 3 HOH 33 535 82 HOH HOH A . G 3 HOH 34 536 83 HOH HOH A . G 3 HOH 35 537 84 HOH HOH A . G 3 HOH 36 538 85 HOH HOH A . G 3 HOH 37 539 86 HOH HOH A . G 3 HOH 38 540 87 HOH HOH A . G 3 HOH 39 541 89 HOH HOH A . G 3 HOH 40 542 91 HOH HOH A . G 3 HOH 41 543 96 HOH HOH A . G 3 HOH 42 544 98 HOH HOH A . G 3 HOH 43 545 99 HOH HOH A . G 3 HOH 44 546 100 HOH HOH A . G 3 HOH 45 547 108 HOH HOH A . G 3 HOH 46 548 109 HOH HOH A . G 3 HOH 47 549 111 HOH HOH A . G 3 HOH 48 550 112 HOH HOH A . G 3 HOH 49 551 114 HOH HOH A . G 3 HOH 50 552 116 HOH HOH A . G 3 HOH 51 553 117 HOH HOH A . G 3 HOH 52 554 118 HOH HOH A . G 3 HOH 53 555 119 HOH HOH A . G 3 HOH 54 556 120 HOH HOH A . G 3 HOH 55 557 121 HOH HOH A . G 3 HOH 56 558 122 HOH HOH A . G 3 HOH 57 559 123 HOH HOH A . G 3 HOH 58 560 124 HOH HOH A . G 3 HOH 59 561 127 HOH HOH A . G 3 HOH 60 562 131 HOH HOH A . G 3 HOH 61 563 134 HOH HOH A . G 3 HOH 62 564 136 HOH HOH A . G 3 HOH 63 565 137 HOH HOH A . G 3 HOH 64 566 139 HOH HOH A . G 3 HOH 65 567 143 HOH HOH A . G 3 HOH 66 568 146 HOH HOH A . G 3 HOH 67 569 148 HOH HOH A . G 3 HOH 68 570 150 HOH HOH A . G 3 HOH 69 571 154 HOH HOH A . G 3 HOH 70 572 156 HOH HOH A . G 3 HOH 71 573 160 HOH HOH A . G 3 HOH 72 574 162 HOH HOH A . G 3 HOH 73 575 163 HOH HOH A . G 3 HOH 74 576 168 HOH HOH A . G 3 HOH 75 577 171 HOH HOH A . G 3 HOH 76 578 173 HOH HOH A . G 3 HOH 77 579 175 HOH HOH A . G 3 HOH 78 580 177 HOH HOH A . G 3 HOH 79 581 178 HOH HOH A . G 3 HOH 80 582 179 HOH HOH A . G 3 HOH 81 583 180 HOH HOH A . G 3 HOH 82 584 181 HOH HOH A . G 3 HOH 83 585 182 HOH HOH A . G 3 HOH 84 586 183 HOH HOH A . G 3 HOH 85 587 184 HOH HOH A . G 3 HOH 86 588 189 HOH HOH A . G 3 HOH 87 589 192 HOH HOH A . G 3 HOH 88 590 193 HOH HOH A . G 3 HOH 89 591 198 HOH HOH A . G 3 HOH 90 592 205 HOH HOH A . G 3 HOH 91 593 206 HOH HOH A . G 3 HOH 92 594 207 HOH HOH A . G 3 HOH 93 595 208 HOH HOH A . G 3 HOH 94 596 209 HOH HOH A . G 3 HOH 95 597 213 HOH HOH A . G 3 HOH 96 598 214 HOH HOH A . G 3 HOH 97 599 215 HOH HOH A . G 3 HOH 98 600 217 HOH HOH A . G 3 HOH 99 601 219 HOH HOH A . G 3 HOH 100 602 221 HOH HOH A . G 3 HOH 101 603 222 HOH HOH A . G 3 HOH 102 604 223 HOH HOH A . G 3 HOH 103 605 224 HOH HOH A . G 3 HOH 104 606 225 HOH HOH A . G 3 HOH 105 607 226 HOH HOH A . G 3 HOH 106 608 227 HOH HOH A . G 3 HOH 107 609 228 HOH HOH A . H 3 HOH 1 505 2 HOH HOH B . H 3 HOH 2 506 3 HOH HOH B . H 3 HOH 3 507 5 HOH HOH B . H 3 HOH 4 508 6 HOH HOH B . H 3 HOH 5 509 8 HOH HOH B . H 3 HOH 6 510 9 HOH HOH B . H 3 HOH 7 511 10 HOH HOH B . H 3 HOH 8 512 12 HOH HOH B . H 3 HOH 9 513 15 HOH HOH B . H 3 HOH 10 514 16 HOH HOH B . H 3 HOH 11 515 17 HOH HOH B . H 3 HOH 12 516 18 HOH HOH B . H 3 HOH 13 517 19 HOH HOH B . H 3 HOH 14 518 21 HOH HOH B . H 3 HOH 15 519 22 HOH HOH B . H 3 HOH 16 520 23 HOH HOH B . H 3 HOH 17 521 24 HOH HOH B . H 3 HOH 18 522 26 HOH HOH B . H 3 HOH 19 523 27 HOH HOH B . H 3 HOH 20 524 29 HOH HOH B . H 3 HOH 21 525 30 HOH HOH B . H 3 HOH 22 526 32 HOH HOH B . H 3 HOH 23 527 33 HOH HOH B . H 3 HOH 24 528 34 HOH HOH B . H 3 HOH 25 529 36 HOH HOH B . H 3 HOH 26 530 37 HOH HOH B . H 3 HOH 27 531 40 HOH HOH B . H 3 HOH 28 532 41 HOH HOH B . H 3 HOH 29 533 42 HOH HOH B . H 3 HOH 30 534 43 HOH HOH B . H 3 HOH 31 535 46 HOH HOH B . H 3 HOH 32 536 48 HOH HOH B . H 3 HOH 33 537 49 HOH HOH B . H 3 HOH 34 538 52 HOH HOH B . H 3 HOH 35 539 53 HOH HOH B . H 3 HOH 36 540 54 HOH HOH B . H 3 HOH 37 541 55 HOH HOH B . H 3 HOH 38 542 56 HOH HOH B . H 3 HOH 39 543 58 HOH HOH B . H 3 HOH 40 544 60 HOH HOH B . H 3 HOH 41 545 61 HOH HOH B . H 3 HOH 42 546 62 HOH HOH B . H 3 HOH 43 547 65 HOH HOH B . H 3 HOH 44 548 70 HOH HOH B . H 3 HOH 45 549 71 HOH HOH B . H 3 HOH 46 550 75 HOH HOH B . H 3 HOH 47 551 77 HOH HOH B . H 3 HOH 48 552 80 HOH HOH B . H 3 HOH 49 553 81 HOH HOH B . H 3 HOH 50 554 88 HOH HOH B . H 3 HOH 51 555 90 HOH HOH B . H 3 HOH 52 556 92 HOH HOH B . H 3 HOH 53 557 93 HOH HOH B . H 3 HOH 54 558 94 HOH HOH B . H 3 HOH 55 559 95 HOH HOH B . H 3 HOH 56 560 97 HOH HOH B . H 3 HOH 57 561 101 HOH HOH B . H 3 HOH 58 562 102 HOH HOH B . H 3 HOH 59 563 103 HOH HOH B . H 3 HOH 60 564 104 HOH HOH B . H 3 HOH 61 565 105 HOH HOH B . H 3 HOH 62 566 106 HOH HOH B . H 3 HOH 63 567 107 HOH HOH B . H 3 HOH 64 568 110 HOH HOH B . H 3 HOH 65 569 113 HOH HOH B . H 3 HOH 66 570 115 HOH HOH B . H 3 HOH 67 571 125 HOH HOH B . H 3 HOH 68 572 126 HOH HOH B . H 3 HOH 69 573 128 HOH HOH B . H 3 HOH 70 574 129 HOH HOH B . H 3 HOH 71 575 130 HOH HOH B . H 3 HOH 72 576 132 HOH HOH B . H 3 HOH 73 577 133 HOH HOH B . H 3 HOH 74 578 135 HOH HOH B . H 3 HOH 75 579 138 HOH HOH B . H 3 HOH 76 580 140 HOH HOH B . H 3 HOH 77 581 141 HOH HOH B . H 3 HOH 78 582 142 HOH HOH B . H 3 HOH 79 583 144 HOH HOH B . H 3 HOH 80 584 145 HOH HOH B . H 3 HOH 81 585 147 HOH HOH B . H 3 HOH 82 586 149 HOH HOH B . H 3 HOH 83 587 151 HOH HOH B . H 3 HOH 84 588 152 HOH HOH B . H 3 HOH 85 589 153 HOH HOH B . H 3 HOH 86 590 155 HOH HOH B . H 3 HOH 87 591 157 HOH HOH B . H 3 HOH 88 592 158 HOH HOH B . H 3 HOH 89 593 159 HOH HOH B . H 3 HOH 90 594 161 HOH HOH B . H 3 HOH 91 595 164 HOH HOH B . H 3 HOH 92 596 165 HOH HOH B . H 3 HOH 93 597 166 HOH HOH B . H 3 HOH 94 598 167 HOH HOH B . H 3 HOH 95 599 169 HOH HOH B . H 3 HOH 96 600 170 HOH HOH B . H 3 HOH 97 601 172 HOH HOH B . H 3 HOH 98 602 174 HOH HOH B . H 3 HOH 99 603 176 HOH HOH B . H 3 HOH 100 604 185 HOH HOH B . H 3 HOH 101 605 186 HOH HOH B . H 3 HOH 102 606 187 HOH HOH B . H 3 HOH 103 607 188 HOH HOH B . H 3 HOH 104 608 190 HOH HOH B . H 3 HOH 105 609 191 HOH HOH B . H 3 HOH 106 610 194 HOH HOH B . H 3 HOH 107 611 195 HOH HOH B . H 3 HOH 108 612 196 HOH HOH B . H 3 HOH 109 613 197 HOH HOH B . H 3 HOH 110 614 199 HOH HOH B . H 3 HOH 111 615 200 HOH HOH B . H 3 HOH 112 616 201 HOH HOH B . H 3 HOH 113 617 202 HOH HOH B . H 3 HOH 114 618 203 HOH HOH B . H 3 HOH 115 619 204 HOH HOH B . H 3 HOH 116 620 210 HOH HOH B . H 3 HOH 117 621 211 HOH HOH B . H 3 HOH 118 622 212 HOH HOH B . H 3 HOH 119 623 216 HOH HOH B . H 3 HOH 120 624 218 HOH HOH B . H 3 HOH 121 625 220 HOH HOH B . H 3 HOH 122 626 229 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 57 A MSE 57 ? MET SELENOMETHIONINE 3 B MSE 57 B MSE 57 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6170 ? 1 MORE -87 ? 1 'SSA (A^2)' 11830 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B HOH 586 ? H HOH . 2 1 B HOH 611 ? H HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 34 ? A GLU 34 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 OD2 ? A ASP 60 ? A ASP 60 ? 1_555 98.3 ? 2 OE1 ? A GLU 34 ? A GLU 34 ? 1_555 MG ? D MG . ? A MG 502 ? 1_555 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 76.6 ? 3 OE1 ? A GLU 34 ? A GLU 34 ? 1_555 MG ? D MG . ? A MG 502 ? 1_555 OE1 ? A GLU 53 ? A GLU 53 ? 1_555 91.5 ? 4 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 MG ? D MG . ? A MG 502 ? 1_555 OE1 ? A GLU 53 ? A GLU 53 ? 1_555 77.4 ? 5 OE1 ? A GLU 34 ? A GLU 34 ? 1_555 MG ? D MG . ? A MG 502 ? 1_555 OD2 ? A ASP 56 ? A ASP 56 ? 1_555 102.3 ? 6 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 MG ? D MG . ? A MG 502 ? 1_555 OD2 ? A ASP 56 ? A ASP 56 ? 1_555 177.3 ? 7 OE1 ? A GLU 53 ? A GLU 53 ? 1_555 MG ? D MG . ? A MG 502 ? 1_555 OD2 ? A ASP 56 ? A ASP 56 ? 1_555 105.1 ? 8 OE2 ? B GLU 34 ? B GLU 34 ? 1_555 MG ? E MG . ? B MG 503 ? 1_555 OD2 ? B ASP 60 ? B ASP 60 ? 1_555 96.9 ? 9 OE1 ? B GLU 34 ? B GLU 34 ? 1_555 MG ? F MG . ? B MG 504 ? 1_555 OE1 ? B GLU 37 ? B GLU 37 ? 1_555 78.7 ? 10 OE1 ? B GLU 34 ? B GLU 34 ? 1_555 MG ? F MG . ? B MG 504 ? 1_555 OE1 ? B GLU 53 ? B GLU 53 ? 1_555 88.8 ? 11 OE1 ? B GLU 37 ? B GLU 37 ? 1_555 MG ? F MG . ? B MG 504 ? 1_555 OE1 ? B GLU 53 ? B GLU 53 ? 1_555 86.4 ? 12 OE1 ? B GLU 34 ? B GLU 34 ? 1_555 MG ? F MG . ? B MG 504 ? 1_555 OD2 ? B ASP 56 ? B ASP 56 ? 1_555 89.1 ? 13 OE1 ? B GLU 37 ? B GLU 37 ? 1_555 MG ? F MG . ? B MG 504 ? 1_555 OD2 ? B ASP 56 ? B ASP 56 ? 1_555 164.6 ? 14 OE1 ? B GLU 53 ? B GLU 53 ? 1_555 MG ? F MG . ? B MG 504 ? 1_555 OD2 ? B ASP 56 ? B ASP 56 ? 1_555 83.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 3 'Structure model' '_struct_ref_seq_dif.details' 17 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N B VAL 2 ? ? O B HOH 621 ? ? 2.03 2 1 NH1 A ARG 112 ? ? O A HOH 597 ? ? 2.05 3 1 O B HOH 582 ? ? O B HOH 617 ? ? 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 10 ? ? CD A GLU 10 ? ? 1.620 1.515 0.105 0.015 N 2 1 CE2 A TYR 59 ? ? CD2 A TYR 59 ? ? 1.491 1.389 0.102 0.015 N 3 1 CE2 A TYR 72 ? ? CD2 A TYR 72 ? ? 1.487 1.389 0.098 0.015 N 4 1 CD A GLU 77 ? ? OE2 A GLU 77 ? ? 1.321 1.252 0.069 0.011 N 5 1 CD B GLU 77 ? ? OE2 B GLU 77 ? ? 1.331 1.252 0.079 0.011 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 14 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 14 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 14 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.22 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.08 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 15 ? ? -135.76 -31.14 2 1 ASN A 45 ? ? 39.96 44.48 3 1 GLU A 97 ? ? -49.22 -70.49 4 1 ASN B 45 ? ? 33.25 47.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B VAL 2 ? CG1 ? B VAL 2 CG1 2 1 Y 1 B VAL 2 ? CG2 ? B VAL 2 CG2 3 1 Y 1 B LYS 115 ? CG ? B LYS 115 CG 4 1 Y 1 B LYS 115 ? CD ? B LYS 115 CD 5 1 Y 1 B LYS 115 ? CE ? B LYS 115 CE 6 1 Y 1 B LYS 115 ? NZ ? B LYS 115 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 115 ? A LYS 115 2 1 Y 1 A ILE 116 ? A ILE 116 3 1 Y 1 B MSE 1 ? B MSE 1 4 1 Y 1 B ILE 116 ? B ILE 116 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH #