data_2YXX # _entry.id 2YXX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YXX RCSB RCSB027273 WWPDB D_1000027273 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id tma001001517.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YXX _pdbx_database_status.recvd_initial_deposition_date 2007-04-27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nakamura, Y.' 1 'Bessho, Y.' 2 'Padmanabhan, B.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Crystal structure analysis of Diaminopimelate decarboxylate (lysA)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nakamura, Y.' 1 primary 'Bessho, Y.' 2 primary 'Padmanabhan, B.' 3 primary 'Yokoyama, S.' 4 # _cell.entry_id 2YXX _cell.length_a 87.818 _cell.length_b 98.276 _cell.length_c 109.304 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YXX _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Diaminopimelate decarboxylase' 44561.406 1 4.1.1.20 ? ? ? 2 non-polymer syn "PYRIDOXAL-5'-PHOSPHATE" 247.142 1 ? ? ? ? 3 water nat water 18.015 242 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'lysA, DAP decarboxylase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)DILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFG(MSE)DVVTKGEL LAAKLAGVPSHTVVWNGNGKSRDQ(MSE)EHFLREDVRIVNVDSFEE(MSE)EIWRELNPEGVEYFIRVNPEVDAKTHPH ISTGLKKHKFGIPLEDLDSF(MSE)ERFRS(MSE)NIRGLHVHIGSQITRVEPFVEAFSKVVRASERYGFEEINIGGGWG INYSGEELDLSSYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGG(MSE)NVLIRPALYSAY HRIFVLGKQGKE(MSE)RADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYT(MSE)SNNYNSTTRPAEVLVRE NGRISLIRRRETE(MSE)DIFKDVV(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;MDILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGV PSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLED LDSFMERFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERYGFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRF KRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVI AYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVVM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier tma001001517.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ASP n 1 3 ILE n 1 4 LEU n 1 5 ARG n 1 6 LYS n 1 7 VAL n 1 8 ALA n 1 9 GLU n 1 10 ILE n 1 11 HIS n 1 12 GLY n 1 13 THR n 1 14 PRO n 1 15 THR n 1 16 TYR n 1 17 VAL n 1 18 TYR n 1 19 PHE n 1 20 GLU n 1 21 GLU n 1 22 THR n 1 23 LEU n 1 24 ARG n 1 25 LYS n 1 26 ARG n 1 27 SER n 1 28 ARG n 1 29 LEU n 1 30 VAL n 1 31 LYS n 1 32 GLU n 1 33 VAL n 1 34 PHE n 1 35 GLU n 1 36 GLY n 1 37 VAL n 1 38 ASN n 1 39 LEU n 1 40 LEU n 1 41 PRO n 1 42 THR n 1 43 PHE n 1 44 ALA n 1 45 VAL n 1 46 LYS n 1 47 ALA n 1 48 ASN n 1 49 ASN n 1 50 ASN n 1 51 PRO n 1 52 VAL n 1 53 LEU n 1 54 LEU n 1 55 LYS n 1 56 ILE n 1 57 LEU n 1 58 ARG n 1 59 GLU n 1 60 GLU n 1 61 GLY n 1 62 PHE n 1 63 GLY n 1 64 MSE n 1 65 ASP n 1 66 VAL n 1 67 VAL n 1 68 THR n 1 69 LYS n 1 70 GLY n 1 71 GLU n 1 72 LEU n 1 73 LEU n 1 74 ALA n 1 75 ALA n 1 76 LYS n 1 77 LEU n 1 78 ALA n 1 79 GLY n 1 80 VAL n 1 81 PRO n 1 82 SER n 1 83 HIS n 1 84 THR n 1 85 VAL n 1 86 VAL n 1 87 TRP n 1 88 ASN n 1 89 GLY n 1 90 ASN n 1 91 GLY n 1 92 LYS n 1 93 SER n 1 94 ARG n 1 95 ASP n 1 96 GLN n 1 97 MSE n 1 98 GLU n 1 99 HIS n 1 100 PHE n 1 101 LEU n 1 102 ARG n 1 103 GLU n 1 104 ASP n 1 105 VAL n 1 106 ARG n 1 107 ILE n 1 108 VAL n 1 109 ASN n 1 110 VAL n 1 111 ASP n 1 112 SER n 1 113 PHE n 1 114 GLU n 1 115 GLU n 1 116 MSE n 1 117 GLU n 1 118 ILE n 1 119 TRP n 1 120 ARG n 1 121 GLU n 1 122 LEU n 1 123 ASN n 1 124 PRO n 1 125 GLU n 1 126 GLY n 1 127 VAL n 1 128 GLU n 1 129 TYR n 1 130 PHE n 1 131 ILE n 1 132 ARG n 1 133 VAL n 1 134 ASN n 1 135 PRO n 1 136 GLU n 1 137 VAL n 1 138 ASP n 1 139 ALA n 1 140 LYS n 1 141 THR n 1 142 HIS n 1 143 PRO n 1 144 HIS n 1 145 ILE n 1 146 SER n 1 147 THR n 1 148 GLY n 1 149 LEU n 1 150 LYS n 1 151 LYS n 1 152 HIS n 1 153 LYS n 1 154 PHE n 1 155 GLY n 1 156 ILE n 1 157 PRO n 1 158 LEU n 1 159 GLU n 1 160 ASP n 1 161 LEU n 1 162 ASP n 1 163 SER n 1 164 PHE n 1 165 MSE n 1 166 GLU n 1 167 ARG n 1 168 PHE n 1 169 ARG n 1 170 SER n 1 171 MSE n 1 172 ASN n 1 173 ILE n 1 174 ARG n 1 175 GLY n 1 176 LEU n 1 177 HIS n 1 178 VAL n 1 179 HIS n 1 180 ILE n 1 181 GLY n 1 182 SER n 1 183 GLN n 1 184 ILE n 1 185 THR n 1 186 ARG n 1 187 VAL n 1 188 GLU n 1 189 PRO n 1 190 PHE n 1 191 VAL n 1 192 GLU n 1 193 ALA n 1 194 PHE n 1 195 SER n 1 196 LYS n 1 197 VAL n 1 198 VAL n 1 199 ARG n 1 200 ALA n 1 201 SER n 1 202 GLU n 1 203 ARG n 1 204 TYR n 1 205 GLY n 1 206 PHE n 1 207 GLU n 1 208 GLU n 1 209 ILE n 1 210 ASN n 1 211 ILE n 1 212 GLY n 1 213 GLY n 1 214 GLY n 1 215 TRP n 1 216 GLY n 1 217 ILE n 1 218 ASN n 1 219 TYR n 1 220 SER n 1 221 GLY n 1 222 GLU n 1 223 GLU n 1 224 LEU n 1 225 ASP n 1 226 LEU n 1 227 SER n 1 228 SER n 1 229 TYR n 1 230 ARG n 1 231 GLU n 1 232 LYS n 1 233 VAL n 1 234 VAL n 1 235 PRO n 1 236 ASP n 1 237 LEU n 1 238 LYS n 1 239 ARG n 1 240 PHE n 1 241 LYS n 1 242 ARG n 1 243 VAL n 1 244 ILE n 1 245 VAL n 1 246 GLU n 1 247 ILE n 1 248 GLY n 1 249 ARG n 1 250 TYR n 1 251 ILE n 1 252 VAL n 1 253 ALA n 1 254 PRO n 1 255 SER n 1 256 GLY n 1 257 TYR n 1 258 LEU n 1 259 LEU n 1 260 LEU n 1 261 ARG n 1 262 VAL n 1 263 VAL n 1 264 LEU n 1 265 VAL n 1 266 LYS n 1 267 ARG n 1 268 ARG n 1 269 HIS n 1 270 ASN n 1 271 LYS n 1 272 ALA n 1 273 PHE n 1 274 VAL n 1 275 VAL n 1 276 VAL n 1 277 ASP n 1 278 GLY n 1 279 GLY n 1 280 MSE n 1 281 ASN n 1 282 VAL n 1 283 LEU n 1 284 ILE n 1 285 ARG n 1 286 PRO n 1 287 ALA n 1 288 LEU n 1 289 TYR n 1 290 SER n 1 291 ALA n 1 292 TYR n 1 293 HIS n 1 294 ARG n 1 295 ILE n 1 296 PHE n 1 297 VAL n 1 298 LEU n 1 299 GLY n 1 300 LYS n 1 301 GLN n 1 302 GLY n 1 303 LYS n 1 304 GLU n 1 305 MSE n 1 306 ARG n 1 307 ALA n 1 308 ASP n 1 309 VAL n 1 310 VAL n 1 311 GLY n 1 312 PRO n 1 313 LEU n 1 314 CYS n 1 315 GLU n 1 316 SER n 1 317 GLY n 1 318 ASP n 1 319 VAL n 1 320 ILE n 1 321 ALA n 1 322 TYR n 1 323 ASP n 1 324 ARG n 1 325 GLU n 1 326 LEU n 1 327 PRO n 1 328 GLU n 1 329 VAL n 1 330 GLU n 1 331 PRO n 1 332 GLY n 1 333 ASP n 1 334 ILE n 1 335 ILE n 1 336 ALA n 1 337 VAL n 1 338 GLU n 1 339 ASN n 1 340 ALA n 1 341 GLY n 1 342 ALA n 1 343 TYR n 1 344 GLY n 1 345 TYR n 1 346 THR n 1 347 MSE n 1 348 SER n 1 349 ASN n 1 350 ASN n 1 351 TYR n 1 352 ASN n 1 353 SER n 1 354 THR n 1 355 THR n 1 356 ARG n 1 357 PRO n 1 358 ALA n 1 359 GLU n 1 360 VAL n 1 361 LEU n 1 362 VAL n 1 363 ARG n 1 364 GLU n 1 365 ASN n 1 366 GLY n 1 367 ARG n 1 368 ILE n 1 369 SER n 1 370 LEU n 1 371 ILE n 1 372 ARG n 1 373 ARG n 1 374 ARG n 1 375 GLU n 1 376 THR n 1 377 GLU n 1 378 MSE n 1 379 ASP n 1 380 ILE n 1 381 PHE n 1 382 LYS n 1 383 ASP n 1 384 VAL n 1 385 VAL n 1 386 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermotoga maritima' _entity_src_gen.gene_src_strain MSB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCDA_THEMA _struct_ref.pdbx_db_accession Q9X1K5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGV PSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLED LDSFMERFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERYGFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRF KRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVI AYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVVM ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YXX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 386 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X1K5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 386 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 386 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PLP non-polymer . "PYRIDOXAL-5'-PHOSPHATE" 'VITAMIN B6 Phosphate' 'C8 H10 N O6 P' 247.142 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YXX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_percent_sol 53.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method oil-batch _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '40%(v/v) PEG600, 0.1M Acetate, 0.2M MgCl2, pH 4.5, oil-batch, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97898 1.0 2 0.90000 1.0 3 0.97946 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97898, 0.90000, 0.97946' # _reflns.entry_id 2YXX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.61 _reflns.number_obs 60672 _reflns.number_all 61468 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 15.8 _reflns.pdbx_redundancy 6.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.61 _reflns_shell.d_res_low 1.67 _reflns_shell.percent_possible_all 88.6 _reflns_shell.Rmerge_I_obs 0.360 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 5394 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2YXX _refine.ls_number_reflns_obs 51251 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 476272.23 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.96 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.189 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.22 _refine.ls_R_factor_R_free_error 0.003 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 5184 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.8 _refine.aniso_B[1][1] -3.44 _refine.aniso_B[2][2] -1.38 _refine.aniso_B[3][3] 4.81 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.375168 _refine.solvent_model_param_bsol 46.9683 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2YXX _refine_analyze.Luzzati_coordinate_error_obs 0.17 _refine_analyze.Luzzati_sigma_a_obs 0.07 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.21 _refine_analyze.Luzzati_sigma_a_free 0.11 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3091 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 242 _refine_hist.number_atoms_total 3349 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 19.96 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.032 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.97 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 7277 _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.percent_reflns_obs 94.3 _refine_ls_shell.R_factor_R_free 0.256 _refine_ls_shell.R_factor_R_free_error 0.009 _refine_ls_shell.percent_reflns_R_free 10.2 _refine_ls_shell.number_reflns_R_free 828 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2YXX _struct.title 'Crystal structure analysis of Diaminopimelate decarboxylate (lysA)' _struct.pdbx_descriptor 'Diaminopimelate decarboxylase (E.C.4.1.1.20)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YXX _struct_keywords.pdbx_keywords LYASE _struct_keywords.text ;TM1517, TIM beta/alpha barrel fold, Lyase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 2 ? GLY A 12 ? ASP A 2 GLY A 12 1 ? 11 HELX_P HELX_P2 2 GLU A 20 ? PHE A 34 ? GLU A 20 PHE A 34 1 ? 15 HELX_P HELX_P3 3 LYS A 46 ? ASN A 48 ? LYS A 46 ASN A 48 5 ? 3 HELX_P HELX_P4 4 ASN A 50 ? GLU A 60 ? ASN A 50 GLU A 60 1 ? 11 HELX_P HELX_P5 5 THR A 68 ? ALA A 78 ? THR A 68 ALA A 78 1 ? 11 HELX_P HELX_P6 6 PRO A 81 ? HIS A 83 ? PRO A 81 HIS A 83 5 ? 3 HELX_P HELX_P7 7 SER A 93 ? GLU A 103 ? SER A 93 GLU A 103 1 ? 11 HELX_P HELX_P8 8 SER A 112 ? ASN A 123 ? SER A 112 ASN A 123 1 ? 12 HELX_P HELX_P9 9 HIS A 142 ? HIS A 152 ? HIS A 142 HIS A 152 1 ? 11 HELX_P HELX_P10 10 ASP A 160 ? ARG A 169 ? ASP A 160 ARG A 169 1 ? 10 HELX_P HELX_P11 11 VAL A 187 ? GLY A 205 ? VAL A 187 GLY A 205 1 ? 19 HELX_P HELX_P12 12 ASP A 225 ? VAL A 233 ? ASP A 225 VAL A 233 1 ? 9 HELX_P HELX_P13 13 VAL A 234 ? LYS A 238 ? VAL A 234 LYS A 238 5 ? 5 HELX_P HELX_P14 14 GLY A 248 ? ALA A 253 ? GLY A 248 ALA A 253 1 ? 6 HELX_P HELX_P15 15 ILE A 284 ? TYR A 289 ? ILE A 284 TYR A 289 1 ? 6 HELX_P HELX_P16 16 GLY A 344 ? SER A 348 ? GLY A 344 SER A 348 5 ? 5 HELX_P HELX_P17 17 THR A 376 ? PHE A 381 ? THR A 376 PHE A 381 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 63 C ? ? ? 1_555 A MSE 64 N ? ? A GLY 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.302 ? covale2 covale ? ? A MSE 64 C ? ? ? 1_555 A ASP 65 N ? ? A MSE 64 A ASP 65 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A GLN 96 C ? ? ? 1_555 A MSE 97 N ? ? A GLN 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.347 ? covale4 covale ? ? A MSE 97 C ? ? ? 1_555 A GLU 98 N ? ? A MSE 97 A GLU 98 1_555 ? ? ? ? ? ? ? 1.347 ? covale5 covale ? ? A GLU 115 C ? ? ? 1_555 A MSE 116 N ? ? A GLU 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? A MSE 116 C ? ? ? 1_555 A GLU 117 N ? ? A MSE 116 A GLU 117 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale ? ? A PHE 164 C ? ? ? 1_555 A MSE 165 N ? ? A PHE 164 A MSE 165 1_555 ? ? ? ? ? ? ? 1.323 ? covale8 covale ? ? A MSE 165 C ? ? ? 1_555 A GLU 166 N ? ? A MSE 165 A GLU 166 1_555 ? ? ? ? ? ? ? 1.318 ? covale9 covale ? ? A SER 170 C ? ? ? 1_555 A MSE 171 N ? ? A SER 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.323 ? covale10 covale ? ? A MSE 171 C ? ? ? 1_555 A ASN 172 N ? ? A MSE 171 A ASN 172 1_555 ? ? ? ? ? ? ? 1.358 ? covale11 covale ? ? A GLY 279 C ? ? ? 1_555 A MSE 280 N ? ? A GLY 279 A MSE 280 1_555 ? ? ? ? ? ? ? 1.323 ? covale12 covale ? ? A MSE 280 C ? ? ? 1_555 A ASN 281 N ? ? A MSE 280 A ASN 281 1_555 ? ? ? ? ? ? ? 1.346 ? covale13 covale ? ? A GLU 304 C ? ? ? 1_555 A MSE 305 N ? ? A GLU 304 A MSE 305 1_555 ? ? ? ? ? ? ? 1.337 ? covale14 covale ? ? A MSE 305 C ? ? ? 1_555 A ARG 306 N ? ? A MSE 305 A ARG 306 1_555 ? ? ? ? ? ? ? 1.337 ? covale15 covale ? ? A THR 346 C ? ? ? 1_555 A MSE 347 N ? ? A THR 346 A MSE 347 1_555 ? ? ? ? ? ? ? 1.306 ? covale16 covale ? ? A MSE 347 C ? ? ? 1_555 A SER 348 N ? ? A MSE 347 A SER 348 1_555 ? ? ? ? ? ? ? 1.339 ? covale17 covale ? ? A GLU 377 C ? ? ? 1_555 A MSE 378 N ? ? A GLU 377 A MSE 378 1_555 ? ? ? ? ? ? ? 1.329 ? covale18 covale ? ? A MSE 378 C ? ? ? 1_555 A ASP 379 N ? ? A MSE 378 A ASP 379 1_555 ? ? ? ? ? ? ? 1.329 ? covale19 covale ? ? A VAL 385 C ? ? ? 1_555 A MSE 386 N ? ? A VAL 385 A MSE 386 1_555 ? ? ? ? ? ? ? 1.319 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 13 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 13 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 14 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 14 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.27 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel C 5 6 ? parallel C 6 7 ? parallel C 7 8 ? parallel C 8 9 ? parallel C 9 10 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 295 ? VAL A 297 ? ILE A 295 VAL A 297 A 2 ILE A 334 ? VAL A 337 ? ILE A 334 VAL A 337 A 3 GLY A 256 ? ARG A 268 ? GLY A 256 ARG A 268 A 4 LYS A 271 ? VAL A 276 ? LYS A 271 VAL A 276 A 5 MSE A 305 ? VAL A 310 ? MSE A 305 VAL A 310 A 6 VAL A 319 ? LEU A 326 ? VAL A 319 LEU A 326 B 1 ILE A 295 ? VAL A 297 ? ILE A 295 VAL A 297 B 2 ILE A 334 ? VAL A 337 ? ILE A 334 VAL A 337 B 3 GLY A 256 ? ARG A 268 ? GLY A 256 ARG A 268 B 4 THR A 15 ? PHE A 19 ? THR A 15 PHE A 19 B 5 ALA A 358 ? VAL A 362 ? ALA A 358 VAL A 362 B 6 ILE A 368 ? ARG A 372 ? ILE A 368 ARG A 372 C 1 ILE A 156 ? PRO A 157 ? ILE A 156 PRO A 157 C 2 GLU A 128 ? ASN A 134 ? GLU A 128 ASN A 134 C 3 ILE A 173 ? HIS A 177 ? ILE A 173 HIS A 177 C 4 GLU A 208 ? ASN A 210 ? GLU A 208 ASN A 210 C 5 ARG A 242 ? ILE A 247 ? ARG A 242 ILE A 247 C 6 LEU A 39 ? ALA A 44 ? LEU A 39 ALA A 44 C 7 GLY A 63 ? VAL A 66 ? GLY A 63 VAL A 66 C 8 VAL A 85 ? TRP A 87 ? VAL A 85 TRP A 87 C 9 ILE A 107 ? VAL A 110 ? ILE A 107 VAL A 110 C 10 GLU A 128 ? ASN A 134 ? GLU A 128 ASN A 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 296 ? N PHE A 296 O ALA A 336 ? O ALA A 336 A 2 3 O ILE A 335 ? O ILE A 335 N LEU A 260 ? N LEU A 260 A 3 4 N VAL A 263 ? N VAL A 263 O VAL A 275 ? O VAL A 275 A 4 5 N VAL A 274 ? N VAL A 274 O ASP A 308 ? O ASP A 308 A 5 6 N VAL A 309 ? N VAL A 309 O ALA A 321 ? O ALA A 321 B 1 2 N PHE A 296 ? N PHE A 296 O ALA A 336 ? O ALA A 336 B 2 3 O ILE A 335 ? O ILE A 335 N LEU A 260 ? N LEU A 260 B 3 4 O LEU A 259 ? O LEU A 259 N THR A 15 ? N THR A 15 B 4 5 N TYR A 18 ? N TYR A 18 O VAL A 362 ? O VAL A 362 B 5 6 N LEU A 361 ? N LEU A 361 O SER A 369 ? O SER A 369 C 1 2 O ILE A 156 ? O ILE A 156 N ARG A 132 ? N ARG A 132 C 2 3 N TYR A 129 ? N TYR A 129 O ARG A 174 ? O ARG A 174 C 3 4 N LEU A 176 ? N LEU A 176 O ASN A 210 ? O ASN A 210 C 4 5 N ILE A 209 ? N ILE A 209 O ILE A 244 ? O ILE A 244 C 5 6 O VAL A 243 ? O VAL A 243 N LEU A 40 ? N LEU A 40 C 6 7 N PHE A 43 ? N PHE A 43 O ASP A 65 ? O ASP A 65 C 7 8 N MSE A 64 ? N MSE A 64 O VAL A 86 ? O VAL A 86 C 8 9 N TRP A 87 ? N TRP A 87 O ASN A 109 ? O ASN A 109 C 9 10 N VAL A 108 ? N VAL A 108 O PHE A 130 ? O PHE A 130 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE PLP A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 LYS A 46 ? LYS A 46 . ? 1_555 ? 2 AC1 13 ASP A 65 ? ASP A 65 . ? 1_555 ? 3 AC1 13 HIS A 179 ? HIS A 179 . ? 1_555 ? 4 AC1 13 SER A 182 ? SER A 182 . ? 1_555 ? 5 AC1 13 GLY A 214 ? GLY A 214 . ? 1_555 ? 6 AC1 13 GLU A 246 ? GLU A 246 . ? 1_555 ? 7 AC1 13 GLY A 248 ? GLY A 248 . ? 1_555 ? 8 AC1 13 ARG A 249 ? ARG A 249 . ? 1_555 ? 9 AC1 13 CYS A 314 ? CYS A 314 . ? 2_665 ? 10 AC1 13 TYR A 343 ? TYR A 343 . ? 1_555 ? 11 AC1 13 HOH C . ? HOH A 404 . ? 1_555 ? 12 AC1 13 HOH C . ? HOH A 450 . ? 1_555 ? 13 AC1 13 HOH C . ? HOH A 612 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YXX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YXX _atom_sites.fract_transf_matrix[1][1] 0.011387 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010175 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009149 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 MSE 64 64 64 MSE MSE A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 MSE 97 97 97 MSE MSE A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 HIS 99 99 99 HIS HIS A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 MSE 116 116 116 MSE MSE A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 TRP 119 119 119 TRP TRP A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 HIS 142 142 142 HIS HIS A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 HIS 144 144 144 HIS HIS A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 LYS 153 153 153 LYS LYS A . n A 1 154 PHE 154 154 154 PHE PHE A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 MSE 165 165 165 MSE MSE A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 ARG 169 169 169 ARG ARG A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 MSE 171 171 171 MSE MSE A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 HIS 177 177 177 HIS HIS A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 HIS 179 179 179 HIS HIS A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 GLN 183 183 183 GLN GLN A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 VAL 187 187 187 VAL VAL A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 PRO 189 189 189 PRO PRO A . n A 1 190 PHE 190 190 190 PHE PHE A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 PHE 194 194 194 PHE PHE A . n A 1 195 SER 195 195 195 SER SER A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 VAL 197 197 197 VAL VAL A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 GLU 202 202 202 GLU GLU A . n A 1 203 ARG 203 203 203 ARG ARG A . n A 1 204 TYR 204 204 204 TYR TYR A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 ILE 209 209 209 ILE ILE A . n A 1 210 ASN 210 210 210 ASN ASN A . n A 1 211 ILE 211 211 211 ILE ILE A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 TRP 215 215 215 TRP TRP A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 ASN 218 218 218 ASN ASN A . n A 1 219 TYR 219 219 219 TYR TYR A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 GLU 222 222 222 GLU GLU A . n A 1 223 GLU 223 223 223 GLU GLU A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 ASP 225 225 225 ASP ASP A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 TYR 229 229 229 TYR TYR A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 GLU 231 231 231 GLU GLU A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 PRO 235 235 235 PRO PRO A . n A 1 236 ASP 236 236 236 ASP ASP A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 LYS 238 238 238 LYS LYS A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 PHE 240 240 240 PHE PHE A . n A 1 241 LYS 241 241 241 LYS LYS A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 ILE 244 244 244 ILE ILE A . n A 1 245 VAL 245 245 245 VAL VAL A . n A 1 246 GLU 246 246 246 GLU GLU A . n A 1 247 ILE 247 247 247 ILE ILE A . n A 1 248 GLY 248 248 248 GLY GLY A . n A 1 249 ARG 249 249 249 ARG ARG A . n A 1 250 TYR 250 250 250 TYR TYR A . n A 1 251 ILE 251 251 251 ILE ILE A . n A 1 252 VAL 252 252 252 VAL VAL A . n A 1 253 ALA 253 253 253 ALA ALA A . n A 1 254 PRO 254 254 254 PRO PRO A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 TYR 257 257 257 TYR TYR A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 LEU 259 259 259 LEU LEU A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 ARG 261 261 261 ARG ARG A . n A 1 262 VAL 262 262 262 VAL VAL A . n A 1 263 VAL 263 263 263 VAL VAL A . n A 1 264 LEU 264 264 264 LEU LEU A . n A 1 265 VAL 265 265 265 VAL VAL A . n A 1 266 LYS 266 266 266 LYS LYS A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 ARG 268 268 268 ARG ARG A . n A 1 269 HIS 269 269 269 HIS HIS A . n A 1 270 ASN 270 270 270 ASN ASN A . n A 1 271 LYS 271 271 271 LYS LYS A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 PHE 273 273 273 PHE PHE A . n A 1 274 VAL 274 274 274 VAL VAL A . n A 1 275 VAL 275 275 275 VAL VAL A . n A 1 276 VAL 276 276 276 VAL VAL A . n A 1 277 ASP 277 277 277 ASP ASP A . n A 1 278 GLY 278 278 278 GLY GLY A . n A 1 279 GLY 279 279 279 GLY GLY A . n A 1 280 MSE 280 280 280 MSE MSE A . n A 1 281 ASN 281 281 281 ASN ASN A . n A 1 282 VAL 282 282 282 VAL VAL A . n A 1 283 LEU 283 283 283 LEU LEU A . n A 1 284 ILE 284 284 284 ILE ILE A . n A 1 285 ARG 285 285 285 ARG ARG A . n A 1 286 PRO 286 286 286 PRO PRO A . n A 1 287 ALA 287 287 287 ALA ALA A . n A 1 288 LEU 288 288 288 LEU LEU A . n A 1 289 TYR 289 289 289 TYR TYR A . n A 1 290 SER 290 290 290 SER SER A . n A 1 291 ALA 291 291 291 ALA ALA A . n A 1 292 TYR 292 292 292 TYR TYR A . n A 1 293 HIS 293 293 293 HIS HIS A . n A 1 294 ARG 294 294 294 ARG ARG A . n A 1 295 ILE 295 295 295 ILE ILE A . n A 1 296 PHE 296 296 296 PHE PHE A . n A 1 297 VAL 297 297 297 VAL VAL A . n A 1 298 LEU 298 298 298 LEU LEU A . n A 1 299 GLY 299 299 299 GLY GLY A . n A 1 300 LYS 300 300 300 LYS LYS A . n A 1 301 GLN 301 301 301 GLN GLN A . n A 1 302 GLY 302 302 302 GLY GLY A . n A 1 303 LYS 303 303 303 LYS LYS A . n A 1 304 GLU 304 304 304 GLU GLU A . n A 1 305 MSE 305 305 305 MSE MSE A . n A 1 306 ARG 306 306 306 ARG ARG A . n A 1 307 ALA 307 307 307 ALA ALA A . n A 1 308 ASP 308 308 308 ASP ASP A . n A 1 309 VAL 309 309 309 VAL VAL A . n A 1 310 VAL 310 310 310 VAL VAL A . n A 1 311 GLY 311 311 311 GLY GLY A . n A 1 312 PRO 312 312 312 PRO PRO A . n A 1 313 LEU 313 313 313 LEU LEU A . n A 1 314 CYS 314 314 314 CYS CYS A . n A 1 315 GLU 315 315 315 GLU GLU A . n A 1 316 SER 316 316 316 SER SER A . n A 1 317 GLY 317 317 317 GLY GLY A . n A 1 318 ASP 318 318 318 ASP ASP A . n A 1 319 VAL 319 319 319 VAL VAL A . n A 1 320 ILE 320 320 320 ILE ILE A . n A 1 321 ALA 321 321 321 ALA ALA A . n A 1 322 TYR 322 322 322 TYR TYR A . n A 1 323 ASP 323 323 323 ASP ASP A . n A 1 324 ARG 324 324 324 ARG ARG A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 LEU 326 326 326 LEU LEU A . n A 1 327 PRO 327 327 327 PRO PRO A . n A 1 328 GLU 328 328 328 GLU GLU A . n A 1 329 VAL 329 329 329 VAL VAL A . n A 1 330 GLU 330 330 330 GLU GLU A . n A 1 331 PRO 331 331 331 PRO PRO A . n A 1 332 GLY 332 332 332 GLY GLY A . n A 1 333 ASP 333 333 333 ASP ASP A . n A 1 334 ILE 334 334 334 ILE ILE A . n A 1 335 ILE 335 335 335 ILE ILE A . n A 1 336 ALA 336 336 336 ALA ALA A . n A 1 337 VAL 337 337 337 VAL VAL A . n A 1 338 GLU 338 338 338 GLU GLU A . n A 1 339 ASN 339 339 339 ASN ASN A . n A 1 340 ALA 340 340 340 ALA ALA A . n A 1 341 GLY 341 341 341 GLY GLY A . n A 1 342 ALA 342 342 342 ALA ALA A . n A 1 343 TYR 343 343 343 TYR TYR A . n A 1 344 GLY 344 344 344 GLY GLY A . n A 1 345 TYR 345 345 345 TYR TYR A . n A 1 346 THR 346 346 346 THR THR A . n A 1 347 MSE 347 347 347 MSE MSE A . n A 1 348 SER 348 348 348 SER SER A . n A 1 349 ASN 349 349 349 ASN ASN A . n A 1 350 ASN 350 350 350 ASN ASN A . n A 1 351 TYR 351 351 351 TYR TYR A . n A 1 352 ASN 352 352 352 ASN ASN A . n A 1 353 SER 353 353 353 SER SER A . n A 1 354 THR 354 354 354 THR THR A . n A 1 355 THR 355 355 355 THR THR A . n A 1 356 ARG 356 356 356 ARG ARG A . n A 1 357 PRO 357 357 357 PRO PRO A . n A 1 358 ALA 358 358 358 ALA ALA A . n A 1 359 GLU 359 359 359 GLU GLU A . n A 1 360 VAL 360 360 360 VAL VAL A . n A 1 361 LEU 361 361 361 LEU LEU A . n A 1 362 VAL 362 362 362 VAL VAL A . n A 1 363 ARG 363 363 363 ARG ARG A . n A 1 364 GLU 364 364 364 GLU GLU A . n A 1 365 ASN 365 365 365 ASN ASN A . n A 1 366 GLY 366 366 366 GLY GLY A . n A 1 367 ARG 367 367 367 ARG ARG A . n A 1 368 ILE 368 368 368 ILE ILE A . n A 1 369 SER 369 369 369 SER SER A . n A 1 370 LEU 370 370 370 LEU LEU A . n A 1 371 ILE 371 371 371 ILE ILE A . n A 1 372 ARG 372 372 372 ARG ARG A . n A 1 373 ARG 373 373 373 ARG ARG A . n A 1 374 ARG 374 374 374 ARG ARG A . n A 1 375 GLU 375 375 375 GLU GLU A . n A 1 376 THR 376 376 376 THR THR A . n A 1 377 GLU 377 377 377 GLU GLU A . n A 1 378 MSE 378 378 378 MSE MSE A . n A 1 379 ASP 379 379 379 ASP ASP A . n A 1 380 ILE 380 380 380 ILE ILE A . n A 1 381 PHE 381 381 381 PHE PHE A . n A 1 382 LYS 382 382 382 LYS LYS A . n A 1 383 ASP 383 383 383 ASP ASP A . n A 1 384 VAL 384 384 384 VAL VAL A . n A 1 385 VAL 385 385 385 VAL VAL A . n A 1 386 MSE 386 386 386 MSE MSE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP 1 401 401 PLP PLP A . C 3 HOH 1 402 1 HOH WAT A . C 3 HOH 2 403 2 HOH WAT A . C 3 HOH 3 404 3 HOH WAT A . C 3 HOH 4 405 4 HOH WAT A . C 3 HOH 5 406 5 HOH WAT A . C 3 HOH 6 407 6 HOH WAT A . C 3 HOH 7 408 7 HOH WAT A . C 3 HOH 8 409 8 HOH WAT A . C 3 HOH 9 410 9 HOH WAT A . C 3 HOH 10 411 10 HOH WAT A . C 3 HOH 11 412 11 HOH WAT A . C 3 HOH 12 413 12 HOH WAT A . C 3 HOH 13 414 13 HOH WAT A . C 3 HOH 14 415 14 HOH WAT A . C 3 HOH 15 416 15 HOH WAT A . C 3 HOH 16 417 16 HOH WAT A . C 3 HOH 17 418 17 HOH WAT A . C 3 HOH 18 419 18 HOH WAT A . C 3 HOH 19 420 19 HOH WAT A . C 3 HOH 20 421 20 HOH WAT A . C 3 HOH 21 422 21 HOH WAT A . C 3 HOH 22 423 22 HOH WAT A . C 3 HOH 23 424 23 HOH WAT A . C 3 HOH 24 425 24 HOH WAT A . C 3 HOH 25 426 25 HOH WAT A . C 3 HOH 26 427 26 HOH WAT A . C 3 HOH 27 428 27 HOH WAT A . C 3 HOH 28 429 28 HOH WAT A . C 3 HOH 29 430 29 HOH WAT A . C 3 HOH 30 431 30 HOH WAT A . C 3 HOH 31 432 31 HOH WAT A . C 3 HOH 32 433 32 HOH WAT A . C 3 HOH 33 434 33 HOH WAT A . C 3 HOH 34 435 34 HOH WAT A . C 3 HOH 35 436 35 HOH WAT A . C 3 HOH 36 437 36 HOH WAT A . C 3 HOH 37 438 37 HOH WAT A . C 3 HOH 38 439 38 HOH WAT A . C 3 HOH 39 440 39 HOH WAT A . C 3 HOH 40 441 40 HOH WAT A . C 3 HOH 41 442 41 HOH WAT A . C 3 HOH 42 443 42 HOH WAT A . C 3 HOH 43 444 43 HOH WAT A . C 3 HOH 44 445 44 HOH WAT A . C 3 HOH 45 446 45 HOH WAT A . C 3 HOH 46 447 46 HOH WAT A . C 3 HOH 47 448 47 HOH WAT A . C 3 HOH 48 449 48 HOH WAT A . C 3 HOH 49 450 49 HOH WAT A . C 3 HOH 50 451 50 HOH WAT A . C 3 HOH 51 452 51 HOH WAT A . C 3 HOH 52 453 52 HOH WAT A . C 3 HOH 53 454 53 HOH WAT A . C 3 HOH 54 455 54 HOH WAT A . C 3 HOH 55 456 55 HOH WAT A . C 3 HOH 56 457 56 HOH WAT A . C 3 HOH 57 458 57 HOH WAT A . C 3 HOH 58 459 58 HOH WAT A . C 3 HOH 59 460 59 HOH WAT A . C 3 HOH 60 461 60 HOH WAT A . C 3 HOH 61 462 61 HOH WAT A . C 3 HOH 62 463 62 HOH WAT A . C 3 HOH 63 464 63 HOH WAT A . C 3 HOH 64 465 64 HOH WAT A . C 3 HOH 65 466 65 HOH WAT A . C 3 HOH 66 467 66 HOH WAT A . C 3 HOH 67 468 67 HOH WAT A . C 3 HOH 68 469 68 HOH WAT A . C 3 HOH 69 470 69 HOH WAT A . C 3 HOH 70 471 70 HOH WAT A . C 3 HOH 71 472 71 HOH WAT A . C 3 HOH 72 473 72 HOH WAT A . C 3 HOH 73 474 73 HOH WAT A . C 3 HOH 74 475 74 HOH WAT A . C 3 HOH 75 476 75 HOH WAT A . C 3 HOH 76 477 76 HOH WAT A . C 3 HOH 77 478 77 HOH WAT A . C 3 HOH 78 479 78 HOH WAT A . C 3 HOH 79 480 79 HOH WAT A . C 3 HOH 80 481 80 HOH WAT A . C 3 HOH 81 482 81 HOH WAT A . C 3 HOH 82 483 82 HOH WAT A . C 3 HOH 83 484 83 HOH WAT A . C 3 HOH 84 485 84 HOH WAT A . C 3 HOH 85 486 85 HOH WAT A . C 3 HOH 86 487 86 HOH WAT A . C 3 HOH 87 488 87 HOH WAT A . C 3 HOH 88 489 88 HOH WAT A . C 3 HOH 89 490 89 HOH WAT A . C 3 HOH 90 491 90 HOH WAT A . C 3 HOH 91 492 91 HOH WAT A . C 3 HOH 92 493 92 HOH WAT A . C 3 HOH 93 494 93 HOH WAT A . C 3 HOH 94 495 94 HOH WAT A . C 3 HOH 95 496 95 HOH WAT A . C 3 HOH 96 497 96 HOH WAT A . C 3 HOH 97 498 97 HOH WAT A . C 3 HOH 98 499 98 HOH WAT A . C 3 HOH 99 500 99 HOH WAT A . C 3 HOH 100 501 100 HOH WAT A . C 3 HOH 101 502 101 HOH WAT A . C 3 HOH 102 503 102 HOH WAT A . C 3 HOH 103 504 103 HOH WAT A . C 3 HOH 104 505 104 HOH WAT A . C 3 HOH 105 506 105 HOH WAT A . C 3 HOH 106 507 106 HOH WAT A . C 3 HOH 107 508 107 HOH WAT A . C 3 HOH 108 509 108 HOH WAT A . C 3 HOH 109 510 109 HOH WAT A . C 3 HOH 110 511 110 HOH WAT A . C 3 HOH 111 512 111 HOH WAT A . C 3 HOH 112 513 112 HOH WAT A . C 3 HOH 113 514 113 HOH WAT A . C 3 HOH 114 515 114 HOH WAT A . C 3 HOH 115 516 115 HOH WAT A . C 3 HOH 116 517 116 HOH WAT A . C 3 HOH 117 518 117 HOH WAT A . C 3 HOH 118 519 118 HOH WAT A . C 3 HOH 119 520 119 HOH WAT A . C 3 HOH 120 521 120 HOH WAT A . C 3 HOH 121 522 121 HOH WAT A . C 3 HOH 122 523 122 HOH WAT A . C 3 HOH 123 524 123 HOH WAT A . C 3 HOH 124 525 124 HOH WAT A . C 3 HOH 125 526 125 HOH WAT A . C 3 HOH 126 527 126 HOH WAT A . C 3 HOH 127 528 127 HOH WAT A . C 3 HOH 128 529 128 HOH WAT A . C 3 HOH 129 530 129 HOH WAT A . C 3 HOH 130 531 130 HOH WAT A . C 3 HOH 131 532 131 HOH WAT A . C 3 HOH 132 533 132 HOH WAT A . C 3 HOH 133 534 133 HOH WAT A . C 3 HOH 134 535 134 HOH WAT A . C 3 HOH 135 536 135 HOH WAT A . C 3 HOH 136 537 136 HOH WAT A . C 3 HOH 137 538 137 HOH WAT A . C 3 HOH 138 539 138 HOH WAT A . C 3 HOH 139 540 139 HOH WAT A . C 3 HOH 140 541 140 HOH WAT A . C 3 HOH 141 542 141 HOH WAT A . C 3 HOH 142 543 142 HOH WAT A . C 3 HOH 143 544 143 HOH WAT A . C 3 HOH 144 545 144 HOH WAT A . C 3 HOH 145 546 145 HOH WAT A . C 3 HOH 146 547 146 HOH WAT A . C 3 HOH 147 548 147 HOH WAT A . C 3 HOH 148 549 148 HOH WAT A . C 3 HOH 149 550 149 HOH WAT A . C 3 HOH 150 551 150 HOH WAT A . C 3 HOH 151 552 151 HOH WAT A . C 3 HOH 152 553 152 HOH WAT A . C 3 HOH 153 554 153 HOH WAT A . C 3 HOH 154 555 154 HOH WAT A . C 3 HOH 155 556 155 HOH WAT A . C 3 HOH 156 557 156 HOH WAT A . C 3 HOH 157 558 157 HOH WAT A . C 3 HOH 158 559 158 HOH WAT A . C 3 HOH 159 560 159 HOH WAT A . C 3 HOH 160 561 160 HOH WAT A . C 3 HOH 161 562 161 HOH WAT A . C 3 HOH 162 563 162 HOH WAT A . C 3 HOH 163 564 163 HOH WAT A . C 3 HOH 164 565 164 HOH WAT A . C 3 HOH 165 566 165 HOH WAT A . C 3 HOH 166 567 166 HOH WAT A . C 3 HOH 167 568 167 HOH WAT A . C 3 HOH 168 569 168 HOH WAT A . C 3 HOH 169 570 169 HOH WAT A . C 3 HOH 170 571 170 HOH WAT A . C 3 HOH 171 572 171 HOH WAT A . C 3 HOH 172 573 172 HOH WAT A . C 3 HOH 173 574 173 HOH WAT A . C 3 HOH 174 575 174 HOH WAT A . C 3 HOH 175 576 175 HOH WAT A . C 3 HOH 176 577 176 HOH WAT A . C 3 HOH 177 578 177 HOH WAT A . C 3 HOH 178 579 178 HOH WAT A . C 3 HOH 179 580 179 HOH WAT A . C 3 HOH 180 581 180 HOH WAT A . C 3 HOH 181 582 181 HOH WAT A . C 3 HOH 182 583 182 HOH WAT A . C 3 HOH 183 584 183 HOH WAT A . C 3 HOH 184 585 184 HOH WAT A . C 3 HOH 185 586 185 HOH WAT A . C 3 HOH 186 587 186 HOH WAT A . C 3 HOH 187 588 187 HOH WAT A . C 3 HOH 188 589 188 HOH WAT A . C 3 HOH 189 590 189 HOH WAT A . C 3 HOH 190 591 190 HOH WAT A . C 3 HOH 191 592 191 HOH WAT A . C 3 HOH 192 593 192 HOH WAT A . C 3 HOH 193 594 193 HOH WAT A . C 3 HOH 194 595 194 HOH WAT A . C 3 HOH 195 596 195 HOH WAT A . C 3 HOH 196 597 196 HOH WAT A . C 3 HOH 197 598 197 HOH WAT A . C 3 HOH 198 599 198 HOH WAT A . C 3 HOH 199 600 199 HOH WAT A . C 3 HOH 200 601 200 HOH WAT A . C 3 HOH 201 602 201 HOH WAT A . C 3 HOH 202 603 202 HOH WAT A . C 3 HOH 203 604 203 HOH WAT A . C 3 HOH 204 605 204 HOH WAT A . C 3 HOH 205 606 205 HOH WAT A . C 3 HOH 206 607 206 HOH WAT A . C 3 HOH 207 608 207 HOH WAT A . C 3 HOH 208 609 208 HOH WAT A . C 3 HOH 209 610 209 HOH WAT A . C 3 HOH 210 611 210 HOH WAT A . C 3 HOH 211 612 211 HOH WAT A . C 3 HOH 212 613 212 HOH WAT A . C 3 HOH 213 614 213 HOH WAT A . C 3 HOH 214 615 214 HOH WAT A . C 3 HOH 215 616 215 HOH WAT A . C 3 HOH 216 617 216 HOH WAT A . C 3 HOH 217 618 217 HOH WAT A . C 3 HOH 218 619 218 HOH WAT A . C 3 HOH 219 620 219 HOH WAT A . C 3 HOH 220 621 220 HOH WAT A . C 3 HOH 221 622 221 HOH WAT A . C 3 HOH 222 623 222 HOH WAT A . C 3 HOH 223 624 223 HOH WAT A . C 3 HOH 224 625 224 HOH WAT A . C 3 HOH 225 626 225 HOH WAT A . C 3 HOH 226 627 226 HOH WAT A . C 3 HOH 227 628 227 HOH WAT A . C 3 HOH 228 629 228 HOH WAT A . C 3 HOH 229 630 229 HOH WAT A . C 3 HOH 230 631 230 HOH WAT A . C 3 HOH 231 632 231 HOH WAT A . C 3 HOH 232 633 232 HOH WAT A . C 3 HOH 233 634 233 HOH WAT A . C 3 HOH 234 635 234 HOH WAT A . C 3 HOH 235 636 235 HOH WAT A . C 3 HOH 236 637 236 HOH WAT A . C 3 HOH 237 638 237 HOH WAT A . C 3 HOH 238 639 238 HOH WAT A . C 3 HOH 239 640 239 HOH WAT A . C 3 HOH 240 641 240 HOH WAT A . C 3 HOH 241 642 241 HOH WAT A . C 3 HOH 242 643 242 HOH WAT A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 64 A MSE 64 ? MET SELENOMETHIONINE 2 A MSE 97 A MSE 97 ? MET SELENOMETHIONINE 3 A MSE 116 A MSE 116 ? MET SELENOMETHIONINE 4 A MSE 165 A MSE 165 ? MET SELENOMETHIONINE 5 A MSE 171 A MSE 171 ? MET SELENOMETHIONINE 6 A MSE 280 A MSE 280 ? MET SELENOMETHIONINE 7 A MSE 305 A MSE 305 ? MET SELENOMETHIONINE 8 A MSE 347 A MSE 347 ? MET SELENOMETHIONINE 9 A MSE 378 A MSE 378 ? MET SELENOMETHIONINE 10 A MSE 386 A MSE 386 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C # _pdbx_struct_assembly_prop.biol_id 2 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 7840 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 87.8180000000 0.0000000000 -1.0000000000 0.0000000000 98.2760000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 46 ? ? O4A A PLP 401 ? ? 2.05 2 1 NH2 A ARG 230 ? ? O A HOH 602 ? ? 2.12 3 1 OD1 A ASP 162 ? ? OH A TYR 204 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CE _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 MSE _pdbx_validate_symm_contact.auth_seq_id_1 378 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 CE _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 MSE _pdbx_validate_symm_contact.auth_seq_id_2 378 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_656 _pdbx_validate_symm_contact.dist 2.01 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A TYR 18 ? ? CD2 A TYR 18 ? ? 1.465 1.387 0.078 0.013 N 2 1 CE A LYS 55 ? ? NZ A LYS 55 ? ? 1.642 1.486 0.156 0.025 N 3 1 CG A GLU 136 ? ? CD A GLU 136 ? ? 1.632 1.515 0.117 0.015 N 4 1 CA A ALA 253 ? ? CB A ALA 253 ? ? 1.649 1.520 0.129 0.021 N 5 1 CB A CYS 314 ? ? SG A CYS 314 ? ? 1.708 1.812 -0.104 0.016 N 6 1 CB A GLU 338 ? ? CG A GLU 338 ? ? 1.357 1.517 -0.160 0.019 N 7 1 CG A MSE 378 ? ? SE A MSE 378 ? ? 2.455 1.950 0.505 0.034 N 8 1 SE A MSE 378 ? ? CE A MSE 378 ? ? 2.512 1.950 0.562 0.059 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 58 ? ? CZ A ARG 58 ? ? NH2 A ARG 58 ? ? 115.76 120.30 -4.54 0.50 N 2 1 CG A MSE 347 ? ? SE A MSE 347 ? ? CE A MSE 347 ? ? 82.36 98.90 -16.54 2.20 N 3 1 CG1 A VAL 360 ? ? CB A VAL 360 ? ? CG2 A VAL 360 ? ? 123.80 110.90 12.90 1.60 N 4 1 CB A MSE 378 ? ? CG A MSE 378 ? ? SE A MSE 378 ? ? 85.21 112.70 -27.49 3.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 138 ? ? -36.48 104.36 2 1 THR A 141 ? ? 168.68 -51.93 3 1 SER A 170 ? ? 93.87 -18.30 4 1 SER A 220 ? ? -145.26 18.32 5 1 HIS A 269 ? ? 56.36 -119.56 6 1 ARG A 372 ? ? -163.21 100.59 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MSE _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MSE _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "PYRIDOXAL-5'-PHOSPHATE" PLP 3 water HOH #