data_2YYR # _entry.id 2YYR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YYR pdb_00002yyr 10.2210/pdb2yyr/pdb RCSB RCSB027303 ? ? WWPDB D_1000027303 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DX8 'Native structure' unspecified TargetDB mmt007007653.2 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YYR _pdbx_database_status.recvd_initial_deposition_date 2007-05-01 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nakamura, Y.' 1 'Padmanabhan, B.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nakamura, Y.' 1 ? primary 'Umehara, T.' 2 ? primary 'Padmanabhan, B.' 3 ? primary 'Yokoyama, S.' 4 ? # _cell.entry_id 2YYR _cell.length_a 59.518 _cell.length_b 59.518 _cell.length_c 95.853 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YYR _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pygopus homolog 1' 7329.780 2 ? ? 'PHD Domain' ? 2 polymer syn 'H3K4Me3 peptide' 976.155 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 4 water nat water 18.015 60 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes 'HGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG(MSE)TETAYGLLTAEASAVWGCDTC(MSE)AD' HGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD A,B mmt007007653.2 2 'polypeptide(L)' no yes 'ART(M3L)QTAR' ARTKQTAR P ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 GLY n 1 3 HIS n 1 4 SER n 1 5 SER n 1 6 SER n 1 7 ASP n 1 8 PRO n 1 9 VAL n 1 10 TYR n 1 11 PRO n 1 12 CYS n 1 13 GLY n 1 14 ILE n 1 15 CYS n 1 16 THR n 1 17 ASN n 1 18 GLU n 1 19 VAL n 1 20 ASN n 1 21 ASP n 1 22 ASP n 1 23 GLN n 1 24 ASP n 1 25 ALA n 1 26 ILE n 1 27 LEU n 1 28 CYS n 1 29 GLU n 1 30 ALA n 1 31 SER n 1 32 CYS n 1 33 GLN n 1 34 LYS n 1 35 TRP n 1 36 PHE n 1 37 HIS n 1 38 ARG n 1 39 ILE n 1 40 CYS n 1 41 THR n 1 42 GLY n 1 43 MSE n 1 44 THR n 1 45 GLU n 1 46 THR n 1 47 ALA n 1 48 TYR n 1 49 GLY n 1 50 LEU n 1 51 LEU n 1 52 THR n 1 53 ALA n 1 54 GLU n 1 55 ALA n 1 56 SER n 1 57 ALA n 1 58 VAL n 1 59 TRP n 1 60 GLY n 1 61 CYS n 1 62 ASP n 1 63 THR n 1 64 CYS n 1 65 MSE n 1 66 ALA n 1 67 ASP n 2 1 ALA n 2 2 ARG n 2 3 THR n 2 4 M3L n 2 5 GLN n 2 6 THR n 2 7 ALA n 2 8 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'cell-free protein synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCR2.1-TOPO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized histone H3 peptide, tri-methylated at Lys4' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PYGO1_MOUSE Q9D0P5 1 HGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 330 ? 2 PDB 2YYR 2YYR 2 ARTKQTAR ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YYR A 1 ? 67 ? Q9D0P5 330 ? 396 ? 330 396 2 1 2YYR B 1 ? 67 ? Q9D0P5 330 ? 396 ? 330 396 3 2 2YYR P 1 ? 8 ? 2YYR 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2YYR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method co-crystallization _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '1.0M Na Citrate, 0.1M LiSo4, 0.1mM ZnCl2, 50mM Tris-HCl, pH 9.0, co-crystallization, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2YYR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 6470 _reflns.number_all 6486 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 43.3 _reflns.pdbx_redundancy 13.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.315 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 13.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 630 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2YYR _refine.ls_number_reflns_obs 6106 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 105460.71 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.43 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 95.8 _refine.ls_R_factor_obs 0.213 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.234 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.6 _refine.ls_number_reflns_R_free 646 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.1 _refine.aniso_B[1][1] 7.62 _refine.aniso_B[2][2] 7.62 _refine.aniso_B[3][3] -15.25 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.29875 _refine.solvent_model_param_bsol 11.0377 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2DX8 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2YYR _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.26 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.34 _refine_analyze.Luzzati_sigma_a_free 0.37 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 951 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1015 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 19.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.04 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 805 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 87.2 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.R_factor_R_free_error 0.041 _refine_ls_shell.percent_reflns_R_free 9.7 _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein.param protein.top 'X-RAY DIFFRACTION' 2 water.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2YYR _struct.title 'Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YYR _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text ;PHD finger, Bcl9/Lgs interactor, histone recognition, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, METAL BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 38 ? GLY A 42 ? ARG A 367 GLY A 371 1 ? 5 HELX_P HELX_P2 2 THR A 44 ? GLU A 54 ? THR A 373 GLU A 383 1 ? 11 HELX_P HELX_P3 3 CYS A 61 ? ALA A 66 ? CYS A 390 ALA A 395 1 ? 6 HELX_P HELX_P4 4 ARG B 38 ? GLY B 42 ? ARG B 367 GLY B 371 1 ? 5 HELX_P HELX_P5 5 THR B 44 ? GLU B 54 ? THR B 373 GLU B 383 1 ? 11 HELX_P HELX_P6 6 CYS B 61 ? ALA B 66 ? CYS B 390 ALA B 395 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 12 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 341 A ZN 401 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc2 metalc ? ? A CYS 15 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 344 A ZN 401 1_555 ? ? ? ? ? ? ? 2.447 ? ? metalc3 metalc ? ? A CYS 28 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 357 A ZN 402 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc4 metalc ? ? A CYS 32 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 361 A ZN 402 1_555 ? ? ? ? ? ? ? 2.236 ? ? metalc5 metalc ? ? A HIS 37 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 366 A ZN 401 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc6 metalc ? ? A CYS 40 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 369 A ZN 401 1_555 ? ? ? ? ? ? ? 2.239 ? ? metalc7 metalc ? ? A CYS 61 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 390 A ZN 402 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc8 metalc ? ? A CYS 64 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 393 A ZN 402 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc9 metalc ? ? B CYS 12 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 341 B ZN 403 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc10 metalc ? ? B CYS 15 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 344 B ZN 403 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc11 metalc ? ? B CYS 28 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 357 B ZN 404 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc12 metalc ? ? B CYS 32 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 361 B ZN 404 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc13 metalc ? ? B HIS 37 ND1 ? ? ? 1_555 F ZN . ZN ? ? B HIS 366 B ZN 403 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc14 metalc ? ? B CYS 40 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 369 B ZN 403 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc15 metalc ? ? B CYS 61 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 390 B ZN 404 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc16 metalc ? ? B CYS 64 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 393 B ZN 404 1_555 ? ? ? ? ? ? ? 2.348 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 25 ? LEU A 27 ? ALA A 354 LEU A 356 A 2 TRP A 35 ? HIS A 37 ? TRP A 364 HIS A 366 B 1 ALA A 57 ? TRP A 59 ? ALA A 386 TRP A 388 B 2 ALA B 57 ? TRP B 59 ? ALA B 386 TRP B 388 C 1 ALA B 25 ? LEU B 27 ? ALA B 354 LEU B 356 C 2 TRP B 35 ? HIS B 37 ? TRP B 364 HIS B 366 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 26 ? N ILE A 355 O PHE A 36 ? O PHE A 365 B 1 2 N VAL A 58 ? N VAL A 387 O VAL B 58 ? O VAL B 387 C 1 2 N ILE B 26 ? N ILE B 355 O PHE B 36 ? O PHE B 365 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 401 ? 4 'BINDING SITE FOR RESIDUE ZN A 401' AC2 Software A ZN 402 ? 4 'BINDING SITE FOR RESIDUE ZN A 402' AC3 Software B ZN 403 ? 4 'BINDING SITE FOR RESIDUE ZN B 403' AC4 Software B ZN 404 ? 4 'BINDING SITE FOR RESIDUE ZN B 404' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 12 ? CYS A 341 . ? 1_555 ? 2 AC1 4 CYS A 15 ? CYS A 344 . ? 1_555 ? 3 AC1 4 HIS A 37 ? HIS A 366 . ? 1_555 ? 4 AC1 4 CYS A 40 ? CYS A 369 . ? 1_555 ? 5 AC2 4 CYS A 28 ? CYS A 357 . ? 1_555 ? 6 AC2 4 CYS A 32 ? CYS A 361 . ? 1_555 ? 7 AC2 4 CYS A 61 ? CYS A 390 . ? 1_555 ? 8 AC2 4 CYS A 64 ? CYS A 393 . ? 1_555 ? 9 AC3 4 CYS B 12 ? CYS B 341 . ? 1_555 ? 10 AC3 4 CYS B 15 ? CYS B 344 . ? 1_555 ? 11 AC3 4 HIS B 37 ? HIS B 366 . ? 1_555 ? 12 AC3 4 CYS B 40 ? CYS B 369 . ? 1_555 ? 13 AC4 4 CYS B 28 ? CYS B 357 . ? 1_555 ? 14 AC4 4 CYS B 32 ? CYS B 361 . ? 1_555 ? 15 AC4 4 CYS B 61 ? CYS B 390 . ? 1_555 ? 16 AC4 4 CYS B 64 ? CYS B 393 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YYR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YYR _atom_sites.fract_transf_matrix[1][1] 0.016802 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016802 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010433 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 330 ? ? ? A . n A 1 2 GLY 2 331 ? ? ? A . n A 1 3 HIS 3 332 ? ? ? A . n A 1 4 SER 4 333 ? ? ? A . n A 1 5 SER 5 334 ? ? ? A . n A 1 6 SER 6 335 ? ? ? A . n A 1 7 ASP 7 336 ? ? ? A . n A 1 8 PRO 8 337 337 PRO PRO A . n A 1 9 VAL 9 338 338 VAL VAL A . n A 1 10 TYR 10 339 339 TYR TYR A . n A 1 11 PRO 11 340 340 PRO PRO A . n A 1 12 CYS 12 341 341 CYS CYS A . n A 1 13 GLY 13 342 342 GLY GLY A . n A 1 14 ILE 14 343 343 ILE ILE A . n A 1 15 CYS 15 344 344 CYS CYS A . n A 1 16 THR 16 345 345 THR THR A . n A 1 17 ASN 17 346 346 ASN ASN A . n A 1 18 GLU 18 347 347 GLU GLU A . n A 1 19 VAL 19 348 348 VAL VAL A . n A 1 20 ASN 20 349 349 ASN ASN A . n A 1 21 ASP 21 350 350 ASP ASP A . n A 1 22 ASP 22 351 351 ASP ASP A . n A 1 23 GLN 23 352 352 GLN GLN A . n A 1 24 ASP 24 353 353 ASP ASP A . n A 1 25 ALA 25 354 354 ALA ALA A . n A 1 26 ILE 26 355 355 ILE ILE A . n A 1 27 LEU 27 356 356 LEU LEU A . n A 1 28 CYS 28 357 357 CYS CYS A . n A 1 29 GLU 29 358 358 GLU GLU A . n A 1 30 ALA 30 359 359 ALA ALA A . n A 1 31 SER 31 360 360 SER SER A . n A 1 32 CYS 32 361 361 CYS CYS A . n A 1 33 GLN 33 362 362 GLN GLN A . n A 1 34 LYS 34 363 363 LYS LYS A . n A 1 35 TRP 35 364 364 TRP TRP A . n A 1 36 PHE 36 365 365 PHE PHE A . n A 1 37 HIS 37 366 366 HIS HIS A . n A 1 38 ARG 38 367 367 ARG ARG A . n A 1 39 ILE 39 368 368 ILE ILE A . n A 1 40 CYS 40 369 369 CYS CYS A . n A 1 41 THR 41 370 370 THR THR A . n A 1 42 GLY 42 371 371 GLY GLY A . n A 1 43 MSE 43 372 372 MSE MSE A . n A 1 44 THR 44 373 373 THR THR A . n A 1 45 GLU 45 374 374 GLU GLU A . n A 1 46 THR 46 375 375 THR THR A . n A 1 47 ALA 47 376 376 ALA ALA A . n A 1 48 TYR 48 377 377 TYR TYR A . n A 1 49 GLY 49 378 378 GLY GLY A . n A 1 50 LEU 50 379 379 LEU LEU A . n A 1 51 LEU 51 380 380 LEU LEU A . n A 1 52 THR 52 381 381 THR THR A . n A 1 53 ALA 53 382 382 ALA ALA A . n A 1 54 GLU 54 383 383 GLU GLU A . n A 1 55 ALA 55 384 384 ALA ALA A . n A 1 56 SER 56 385 385 SER SER A . n A 1 57 ALA 57 386 386 ALA ALA A . n A 1 58 VAL 58 387 387 VAL VAL A . n A 1 59 TRP 59 388 388 TRP TRP A . n A 1 60 GLY 60 389 389 GLY GLY A . n A 1 61 CYS 61 390 390 CYS CYS A . n A 1 62 ASP 62 391 391 ASP ASP A . n A 1 63 THR 63 392 392 THR THR A . n A 1 64 CYS 64 393 393 CYS CYS A . n A 1 65 MSE 65 394 394 MSE MSE A . n A 1 66 ALA 66 395 395 ALA ALA A . n A 1 67 ASP 67 396 396 ASP ASP A . n B 1 1 HIS 1 330 ? ? ? B . n B 1 2 GLY 2 331 ? ? ? B . n B 1 3 HIS 3 332 ? ? ? B . n B 1 4 SER 4 333 ? ? ? B . n B 1 5 SER 5 334 ? ? ? B . n B 1 6 SER 6 335 ? ? ? B . n B 1 7 ASP 7 336 ? ? ? B . n B 1 8 PRO 8 337 337 PRO PRO B . n B 1 9 VAL 9 338 338 VAL VAL B . n B 1 10 TYR 10 339 339 TYR TYR B . n B 1 11 PRO 11 340 340 PRO PRO B . n B 1 12 CYS 12 341 341 CYS CYS B . n B 1 13 GLY 13 342 342 GLY GLY B . n B 1 14 ILE 14 343 343 ILE ILE B . n B 1 15 CYS 15 344 344 CYS CYS B . n B 1 16 THR 16 345 345 THR THR B . n B 1 17 ASN 17 346 346 ASN ASN B . n B 1 18 GLU 18 347 347 GLU GLU B . n B 1 19 VAL 19 348 348 VAL VAL B . n B 1 20 ASN 20 349 349 ASN ASN B . n B 1 21 ASP 21 350 350 ASP ASP B . n B 1 22 ASP 22 351 351 ASP ASP B . n B 1 23 GLN 23 352 352 GLN GLN B . n B 1 24 ASP 24 353 353 ASP ASP B . n B 1 25 ALA 25 354 354 ALA ALA B . n B 1 26 ILE 26 355 355 ILE ILE B . n B 1 27 LEU 27 356 356 LEU LEU B . n B 1 28 CYS 28 357 357 CYS CYS B . n B 1 29 GLU 29 358 358 GLU GLU B . n B 1 30 ALA 30 359 359 ALA ALA B . n B 1 31 SER 31 360 360 SER SER B . n B 1 32 CYS 32 361 361 CYS CYS B . n B 1 33 GLN 33 362 362 GLN GLN B . n B 1 34 LYS 34 363 363 LYS LYS B . n B 1 35 TRP 35 364 364 TRP TRP B . n B 1 36 PHE 36 365 365 PHE PHE B . n B 1 37 HIS 37 366 366 HIS HIS B . n B 1 38 ARG 38 367 367 ARG ARG B . n B 1 39 ILE 39 368 368 ILE ILE B . n B 1 40 CYS 40 369 369 CYS CYS B . n B 1 41 THR 41 370 370 THR THR B . n B 1 42 GLY 42 371 371 GLY GLY B . n B 1 43 MSE 43 372 372 MSE MSE B . n B 1 44 THR 44 373 373 THR THR B . n B 1 45 GLU 45 374 374 GLU GLU B . n B 1 46 THR 46 375 375 THR THR B . n B 1 47 ALA 47 376 376 ALA ALA B . n B 1 48 TYR 48 377 377 TYR TYR B . n B 1 49 GLY 49 378 378 GLY GLY B . n B 1 50 LEU 50 379 379 LEU LEU B . n B 1 51 LEU 51 380 380 LEU LEU B . n B 1 52 THR 52 381 381 THR THR B . n B 1 53 ALA 53 382 382 ALA ALA B . n B 1 54 GLU 54 383 383 GLU GLU B . n B 1 55 ALA 55 384 384 ALA ALA B . n B 1 56 SER 56 385 385 SER SER B . n B 1 57 ALA 57 386 386 ALA ALA B . n B 1 58 VAL 58 387 387 VAL VAL B . n B 1 59 TRP 59 388 388 TRP TRP B . n B 1 60 GLY 60 389 389 GLY GLY B . n B 1 61 CYS 61 390 390 CYS CYS B . n B 1 62 ASP 62 391 391 ASP ASP B . n B 1 63 THR 63 392 392 THR THR B . n B 1 64 CYS 64 393 393 CYS CYS B . n B 1 65 MSE 65 394 394 MSE MSE B . n B 1 66 ALA 66 395 395 ALA ALA B . n B 1 67 ASP 67 396 396 ASP ASP B . n C 2 1 ALA 1 1 1 ALA ALA P . n C 2 2 ARG 2 2 2 ARG ARG P . n C 2 3 THR 3 3 3 THR THR P . n C 2 4 M3L 4 4 4 M3L M3L P . n C 2 5 GLN 5 5 5 GLN GLN P . n C 2 6 THR 6 6 6 THR THR P . n C 2 7 ALA 7 7 ? ? ? P . n C 2 8 ARG 8 8 ? ? ? P . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN 1 401 401 ZN ZN A . E 3 ZN 1 402 402 ZN ZN A . F 3 ZN 1 403 403 ZN ZN B . G 3 ZN 1 404 404 ZN ZN B . H 4 HOH 1 3 3 HOH WAT A . H 4 HOH 2 4 4 HOH WAT A . H 4 HOH 3 5 5 HOH WAT A . H 4 HOH 4 11 11 HOH WAT A . H 4 HOH 5 12 12 HOH WAT A . H 4 HOH 6 13 13 HOH WAT A . H 4 HOH 7 14 14 HOH WAT A . H 4 HOH 8 15 15 HOH WAT A . H 4 HOH 9 21 21 HOH WAT A . H 4 HOH 10 22 22 HOH WAT A . H 4 HOH 11 25 25 HOH WAT A . H 4 HOH 12 29 29 HOH WAT A . H 4 HOH 13 32 32 HOH WAT A . H 4 HOH 14 35 35 HOH WAT A . H 4 HOH 15 38 38 HOH WAT A . H 4 HOH 16 39 39 HOH WAT A . H 4 HOH 17 41 41 HOH WAT A . H 4 HOH 18 43 43 HOH WAT A . H 4 HOH 19 47 47 HOH WAT A . H 4 HOH 20 50 50 HOH WAT A . H 4 HOH 21 52 52 HOH WAT A . H 4 HOH 22 53 53 HOH WAT A . H 4 HOH 23 57 57 HOH WAT A . H 4 HOH 24 58 58 HOH WAT A . H 4 HOH 25 60 60 HOH WAT A . I 4 HOH 1 1 1 HOH WAT B . I 4 HOH 2 2 2 HOH WAT B . I 4 HOH 3 6 6 HOH WAT B . I 4 HOH 4 7 7 HOH WAT B . I 4 HOH 5 8 8 HOH WAT B . I 4 HOH 6 9 9 HOH WAT B . I 4 HOH 7 10 10 HOH WAT B . I 4 HOH 8 16 16 HOH WAT B . I 4 HOH 9 17 17 HOH WAT B . I 4 HOH 10 18 18 HOH WAT B . I 4 HOH 11 19 19 HOH WAT B . I 4 HOH 12 20 20 HOH WAT B . I 4 HOH 13 23 23 HOH WAT B . I 4 HOH 14 24 24 HOH WAT B . I 4 HOH 15 26 26 HOH WAT B . I 4 HOH 16 27 27 HOH WAT B . I 4 HOH 17 28 28 HOH WAT B . I 4 HOH 18 30 30 HOH WAT B . I 4 HOH 19 31 31 HOH WAT B . I 4 HOH 20 33 33 HOH WAT B . I 4 HOH 21 34 34 HOH WAT B . I 4 HOH 22 36 36 HOH WAT B . I 4 HOH 23 37 37 HOH WAT B . I 4 HOH 24 40 40 HOH WAT B . I 4 HOH 25 44 44 HOH WAT B . I 4 HOH 26 45 45 HOH WAT B . I 4 HOH 27 46 46 HOH WAT B . I 4 HOH 28 48 48 HOH WAT B . I 4 HOH 29 49 49 HOH WAT B . I 4 HOH 30 51 51 HOH WAT B . I 4 HOH 31 54 54 HOH WAT B . I 4 HOH 32 55 55 HOH WAT B . I 4 HOH 33 59 59 HOH WAT B . J 4 HOH 1 42 42 HOH WAT P . J 4 HOH 2 56 56 HOH WAT P . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 43 A MSE 372 ? MET SELENOMETHIONINE 2 A MSE 65 A MSE 394 ? MET SELENOMETHIONINE 3 B MSE 43 B MSE 372 ? MET SELENOMETHIONINE 4 B MSE 65 B MSE 394 ? MET SELENOMETHIONINE 5 C M3L 4 P M3L 4 ? LYS N-TRIMETHYLLYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1960 ? 1 MORE -32.4 ? 1 'SSA (A^2)' 7710 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 12 ? A CYS 341 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? A CYS 15 ? A CYS 344 ? 1_555 106.5 ? 2 SG ? A CYS 12 ? A CYS 341 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 37 ? A HIS 366 ? 1_555 98.3 ? 3 SG ? A CYS 15 ? A CYS 344 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 37 ? A HIS 366 ? 1_555 104.1 ? 4 SG ? A CYS 12 ? A CYS 341 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? A CYS 40 ? A CYS 369 ? 1_555 114.1 ? 5 SG ? A CYS 15 ? A CYS 344 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? A CYS 40 ? A CYS 369 ? 1_555 111.7 ? 6 ND1 ? A HIS 37 ? A HIS 366 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? A CYS 40 ? A CYS 369 ? 1_555 120.4 ? 7 SG ? A CYS 28 ? A CYS 357 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 SG ? A CYS 32 ? A CYS 361 ? 1_555 106.8 ? 8 SG ? A CYS 28 ? A CYS 357 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 SG ? A CYS 61 ? A CYS 390 ? 1_555 114.3 ? 9 SG ? A CYS 32 ? A CYS 361 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 SG ? A CYS 61 ? A CYS 390 ? 1_555 119.2 ? 10 SG ? A CYS 28 ? A CYS 357 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 SG ? A CYS 64 ? A CYS 393 ? 1_555 105.5 ? 11 SG ? A CYS 32 ? A CYS 361 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 SG ? A CYS 64 ? A CYS 393 ? 1_555 109.4 ? 12 SG ? A CYS 61 ? A CYS 390 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 SG ? A CYS 64 ? A CYS 393 ? 1_555 100.7 ? 13 SG ? B CYS 12 ? B CYS 341 ? 1_555 ZN ? F ZN . ? B ZN 403 ? 1_555 SG ? B CYS 15 ? B CYS 344 ? 1_555 111.4 ? 14 SG ? B CYS 12 ? B CYS 341 ? 1_555 ZN ? F ZN . ? B ZN 403 ? 1_555 ND1 ? B HIS 37 ? B HIS 366 ? 1_555 99.7 ? 15 SG ? B CYS 15 ? B CYS 344 ? 1_555 ZN ? F ZN . ? B ZN 403 ? 1_555 ND1 ? B HIS 37 ? B HIS 366 ? 1_555 100.4 ? 16 SG ? B CYS 12 ? B CYS 341 ? 1_555 ZN ? F ZN . ? B ZN 403 ? 1_555 SG ? B CYS 40 ? B CYS 369 ? 1_555 116.9 ? 17 SG ? B CYS 15 ? B CYS 344 ? 1_555 ZN ? F ZN . ? B ZN 403 ? 1_555 SG ? B CYS 40 ? B CYS 369 ? 1_555 109.6 ? 18 ND1 ? B HIS 37 ? B HIS 366 ? 1_555 ZN ? F ZN . ? B ZN 403 ? 1_555 SG ? B CYS 40 ? B CYS 369 ? 1_555 117.3 ? 19 SG ? B CYS 28 ? B CYS 357 ? 1_555 ZN ? G ZN . ? B ZN 404 ? 1_555 SG ? B CYS 32 ? B CYS 361 ? 1_555 107.2 ? 20 SG ? B CYS 28 ? B CYS 357 ? 1_555 ZN ? G ZN . ? B ZN 404 ? 1_555 SG ? B CYS 61 ? B CYS 390 ? 1_555 114.3 ? 21 SG ? B CYS 32 ? B CYS 361 ? 1_555 ZN ? G ZN . ? B ZN 404 ? 1_555 SG ? B CYS 61 ? B CYS 390 ? 1_555 119.4 ? 22 SG ? B CYS 28 ? B CYS 357 ? 1_555 ZN ? G ZN . ? B ZN 404 ? 1_555 SG ? B CYS 64 ? B CYS 393 ? 1_555 102.9 ? 23 SG ? B CYS 32 ? B CYS 361 ? 1_555 ZN ? G ZN . ? B ZN 404 ? 1_555 SG ? B CYS 64 ? B CYS 393 ? 1_555 108.5 ? 24 SG ? B CYS 61 ? B CYS 390 ? 1_555 ZN ? G ZN . ? B ZN 404 ? 1_555 SG ? B CYS 64 ? B CYS 393 ? 1_555 103.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-10-25 4 'Structure model' 1 3 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 19 4 'Structure model' '_chem_comp_atom.atom_id' 20 4 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 345 ? ? 67.98 -1.75 2 1 SER A 360 ? ? -164.22 -75.04 3 1 VAL B 338 ? ? 52.32 132.71 4 1 SER B 360 ? ? -164.68 -77.31 5 1 GLN P 5 ? ? -65.05 78.66 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 330 ? A HIS 1 2 1 Y 1 A GLY 331 ? A GLY 2 3 1 Y 1 A HIS 332 ? A HIS 3 4 1 Y 1 A SER 333 ? A SER 4 5 1 Y 1 A SER 334 ? A SER 5 6 1 Y 1 A SER 335 ? A SER 6 7 1 Y 1 A ASP 336 ? A ASP 7 8 1 Y 1 B HIS 330 ? B HIS 1 9 1 Y 1 B GLY 331 ? B GLY 2 10 1 Y 1 B HIS 332 ? B HIS 3 11 1 Y 1 B SER 333 ? B SER 4 12 1 Y 1 B SER 334 ? B SER 5 13 1 Y 1 B SER 335 ? B SER 6 14 1 Y 1 B ASP 336 ? B ASP 7 15 1 Y 1 P ALA 7 ? C ALA 7 16 1 Y 1 P ARG 8 ? C ARG 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 M3L N N N N 230 M3L CA C N S 231 M3L CB C N N 232 M3L CG C N N 233 M3L CD C N N 234 M3L CE C N N 235 M3L NZ N N N 236 M3L C C N N 237 M3L O O N N 238 M3L OXT O N N 239 M3L CM1 C N N 240 M3L CM2 C N N 241 M3L CM3 C N N 242 M3L H H N N 243 M3L H2 H N N 244 M3L HA H N N 245 M3L HB2 H N N 246 M3L HB3 H N N 247 M3L HG2 H N N 248 M3L HG3 H N N 249 M3L HD2 H N N 250 M3L HD3 H N N 251 M3L HE2 H N N 252 M3L HE3 H N N 253 M3L HXT H N N 254 M3L HM11 H N N 255 M3L HM12 H N N 256 M3L HM13 H N N 257 M3L HM21 H N N 258 M3L HM22 H N N 259 M3L HM23 H N N 260 M3L HM31 H N N 261 M3L HM32 H N N 262 M3L HM33 H N N 263 MSE N N N N 264 MSE CA C N S 265 MSE C C N N 266 MSE O O N N 267 MSE OXT O N N 268 MSE CB C N N 269 MSE CG C N N 270 MSE SE SE N N 271 MSE CE C N N 272 MSE H H N N 273 MSE H2 H N N 274 MSE HA H N N 275 MSE HXT H N N 276 MSE HB2 H N N 277 MSE HB3 H N N 278 MSE HG2 H N N 279 MSE HG3 H N N 280 MSE HE1 H N N 281 MSE HE2 H N N 282 MSE HE3 H N N 283 PHE N N N N 284 PHE CA C N S 285 PHE C C N N 286 PHE O O N N 287 PHE CB C N N 288 PHE CG C Y N 289 PHE CD1 C Y N 290 PHE CD2 C Y N 291 PHE CE1 C Y N 292 PHE CE2 C Y N 293 PHE CZ C Y N 294 PHE OXT O N N 295 PHE H H N N 296 PHE H2 H N N 297 PHE HA H N N 298 PHE HB2 H N N 299 PHE HB3 H N N 300 PHE HD1 H N N 301 PHE HD2 H N N 302 PHE HE1 H N N 303 PHE HE2 H N N 304 PHE HZ H N N 305 PHE HXT H N N 306 PRO N N N N 307 PRO CA C N S 308 PRO C C N N 309 PRO O O N N 310 PRO CB C N N 311 PRO CG C N N 312 PRO CD C N N 313 PRO OXT O N N 314 PRO H H N N 315 PRO HA H N N 316 PRO HB2 H N N 317 PRO HB3 H N N 318 PRO HG2 H N N 319 PRO HG3 H N N 320 PRO HD2 H N N 321 PRO HD3 H N N 322 PRO HXT H N N 323 SER N N N N 324 SER CA C N S 325 SER C C N N 326 SER O O N N 327 SER CB C N N 328 SER OG O N N 329 SER OXT O N N 330 SER H H N N 331 SER H2 H N N 332 SER HA H N N 333 SER HB2 H N N 334 SER HB3 H N N 335 SER HG H N N 336 SER HXT H N N 337 THR N N N N 338 THR CA C N S 339 THR C C N N 340 THR O O N N 341 THR CB C N R 342 THR OG1 O N N 343 THR CG2 C N N 344 THR OXT O N N 345 THR H H N N 346 THR H2 H N N 347 THR HA H N N 348 THR HB H N N 349 THR HG1 H N N 350 THR HG21 H N N 351 THR HG22 H N N 352 THR HG23 H N N 353 THR HXT H N N 354 TRP N N N N 355 TRP CA C N S 356 TRP C C N N 357 TRP O O N N 358 TRP CB C N N 359 TRP CG C Y N 360 TRP CD1 C Y N 361 TRP CD2 C Y N 362 TRP NE1 N Y N 363 TRP CE2 C Y N 364 TRP CE3 C Y N 365 TRP CZ2 C Y N 366 TRP CZ3 C Y N 367 TRP CH2 C Y N 368 TRP OXT O N N 369 TRP H H N N 370 TRP H2 H N N 371 TRP HA H N N 372 TRP HB2 H N N 373 TRP HB3 H N N 374 TRP HD1 H N N 375 TRP HE1 H N N 376 TRP HE3 H N N 377 TRP HZ2 H N N 378 TRP HZ3 H N N 379 TRP HH2 H N N 380 TRP HXT H N N 381 TYR N N N N 382 TYR CA C N S 383 TYR C C N N 384 TYR O O N N 385 TYR CB C N N 386 TYR CG C Y N 387 TYR CD1 C Y N 388 TYR CD2 C Y N 389 TYR CE1 C Y N 390 TYR CE2 C Y N 391 TYR CZ C Y N 392 TYR OH O N N 393 TYR OXT O N N 394 TYR H H N N 395 TYR H2 H N N 396 TYR HA H N N 397 TYR HB2 H N N 398 TYR HB3 H N N 399 TYR HD1 H N N 400 TYR HD2 H N N 401 TYR HE1 H N N 402 TYR HE2 H N N 403 TYR HH H N N 404 TYR HXT H N N 405 VAL N N N N 406 VAL CA C N S 407 VAL C C N N 408 VAL O O N N 409 VAL CB C N N 410 VAL CG1 C N N 411 VAL CG2 C N N 412 VAL OXT O N N 413 VAL H H N N 414 VAL H2 H N N 415 VAL HA H N N 416 VAL HB H N N 417 VAL HG11 H N N 418 VAL HG12 H N N 419 VAL HG13 H N N 420 VAL HG21 H N N 421 VAL HG22 H N N 422 VAL HG23 H N N 423 VAL HXT H N N 424 ZN ZN ZN N N 425 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 M3L N CA sing N N 218 M3L N H sing N N 219 M3L N H2 sing N N 220 M3L CA CB sing N N 221 M3L CA C sing N N 222 M3L CA HA sing N N 223 M3L CB CG sing N N 224 M3L CB HB2 sing N N 225 M3L CB HB3 sing N N 226 M3L CG CD sing N N 227 M3L CG HG2 sing N N 228 M3L CG HG3 sing N N 229 M3L CD CE sing N N 230 M3L CD HD2 sing N N 231 M3L CD HD3 sing N N 232 M3L CE NZ sing N N 233 M3L CE HE2 sing N N 234 M3L CE HE3 sing N N 235 M3L NZ CM1 sing N N 236 M3L NZ CM2 sing N N 237 M3L NZ CM3 sing N N 238 M3L C O doub N N 239 M3L C OXT sing N N 240 M3L OXT HXT sing N N 241 M3L CM1 HM11 sing N N 242 M3L CM1 HM12 sing N N 243 M3L CM1 HM13 sing N N 244 M3L CM2 HM21 sing N N 245 M3L CM2 HM22 sing N N 246 M3L CM2 HM23 sing N N 247 M3L CM3 HM31 sing N N 248 M3L CM3 HM32 sing N N 249 M3L CM3 HM33 sing N N 250 MSE N CA sing N N 251 MSE N H sing N N 252 MSE N H2 sing N N 253 MSE CA C sing N N 254 MSE CA CB sing N N 255 MSE CA HA sing N N 256 MSE C O doub N N 257 MSE C OXT sing N N 258 MSE OXT HXT sing N N 259 MSE CB CG sing N N 260 MSE CB HB2 sing N N 261 MSE CB HB3 sing N N 262 MSE CG SE sing N N 263 MSE CG HG2 sing N N 264 MSE CG HG3 sing N N 265 MSE SE CE sing N N 266 MSE CE HE1 sing N N 267 MSE CE HE2 sing N N 268 MSE CE HE3 sing N N 269 PHE N CA sing N N 270 PHE N H sing N N 271 PHE N H2 sing N N 272 PHE CA C sing N N 273 PHE CA CB sing N N 274 PHE CA HA sing N N 275 PHE C O doub N N 276 PHE C OXT sing N N 277 PHE CB CG sing N N 278 PHE CB HB2 sing N N 279 PHE CB HB3 sing N N 280 PHE CG CD1 doub Y N 281 PHE CG CD2 sing Y N 282 PHE CD1 CE1 sing Y N 283 PHE CD1 HD1 sing N N 284 PHE CD2 CE2 doub Y N 285 PHE CD2 HD2 sing N N 286 PHE CE1 CZ doub Y N 287 PHE CE1 HE1 sing N N 288 PHE CE2 CZ sing Y N 289 PHE CE2 HE2 sing N N 290 PHE CZ HZ sing N N 291 PHE OXT HXT sing N N 292 PRO N CA sing N N 293 PRO N CD sing N N 294 PRO N H sing N N 295 PRO CA C sing N N 296 PRO CA CB sing N N 297 PRO CA HA sing N N 298 PRO C O doub N N 299 PRO C OXT sing N N 300 PRO CB CG sing N N 301 PRO CB HB2 sing N N 302 PRO CB HB3 sing N N 303 PRO CG CD sing N N 304 PRO CG HG2 sing N N 305 PRO CG HG3 sing N N 306 PRO CD HD2 sing N N 307 PRO CD HD3 sing N N 308 PRO OXT HXT sing N N 309 SER N CA sing N N 310 SER N H sing N N 311 SER N H2 sing N N 312 SER CA C sing N N 313 SER CA CB sing N N 314 SER CA HA sing N N 315 SER C O doub N N 316 SER C OXT sing N N 317 SER CB OG sing N N 318 SER CB HB2 sing N N 319 SER CB HB3 sing N N 320 SER OG HG sing N N 321 SER OXT HXT sing N N 322 THR N CA sing N N 323 THR N H sing N N 324 THR N H2 sing N N 325 THR CA C sing N N 326 THR CA CB sing N N 327 THR CA HA sing N N 328 THR C O doub N N 329 THR C OXT sing N N 330 THR CB OG1 sing N N 331 THR CB CG2 sing N N 332 THR CB HB sing N N 333 THR OG1 HG1 sing N N 334 THR CG2 HG21 sing N N 335 THR CG2 HG22 sing N N 336 THR CG2 HG23 sing N N 337 THR OXT HXT sing N N 338 TRP N CA sing N N 339 TRP N H sing N N 340 TRP N H2 sing N N 341 TRP CA C sing N N 342 TRP CA CB sing N N 343 TRP CA HA sing N N 344 TRP C O doub N N 345 TRP C OXT sing N N 346 TRP CB CG sing N N 347 TRP CB HB2 sing N N 348 TRP CB HB3 sing N N 349 TRP CG CD1 doub Y N 350 TRP CG CD2 sing Y N 351 TRP CD1 NE1 sing Y N 352 TRP CD1 HD1 sing N N 353 TRP CD2 CE2 doub Y N 354 TRP CD2 CE3 sing Y N 355 TRP NE1 CE2 sing Y N 356 TRP NE1 HE1 sing N N 357 TRP CE2 CZ2 sing Y N 358 TRP CE3 CZ3 doub Y N 359 TRP CE3 HE3 sing N N 360 TRP CZ2 CH2 doub Y N 361 TRP CZ2 HZ2 sing N N 362 TRP CZ3 CH2 sing Y N 363 TRP CZ3 HZ3 sing N N 364 TRP CH2 HH2 sing N N 365 TRP OXT HXT sing N N 366 TYR N CA sing N N 367 TYR N H sing N N 368 TYR N H2 sing N N 369 TYR CA C sing N N 370 TYR CA CB sing N N 371 TYR CA HA sing N N 372 TYR C O doub N N 373 TYR C OXT sing N N 374 TYR CB CG sing N N 375 TYR CB HB2 sing N N 376 TYR CB HB3 sing N N 377 TYR CG CD1 doub Y N 378 TYR CG CD2 sing Y N 379 TYR CD1 CE1 sing Y N 380 TYR CD1 HD1 sing N N 381 TYR CD2 CE2 doub Y N 382 TYR CD2 HD2 sing N N 383 TYR CE1 CZ doub Y N 384 TYR CE1 HE1 sing N N 385 TYR CE2 CZ sing Y N 386 TYR CE2 HE2 sing N N 387 TYR CZ OH sing N N 388 TYR OH HH sing N N 389 TYR OXT HXT sing N N 390 VAL N CA sing N N 391 VAL N H sing N N 392 VAL N H2 sing N N 393 VAL CA C sing N N 394 VAL CA CB sing N N 395 VAL CA HA sing N N 396 VAL C O doub N N 397 VAL C OXT sing N N 398 VAL CB CG1 sing N N 399 VAL CB CG2 sing N N 400 VAL CB HB sing N N 401 VAL CG1 HG11 sing N N 402 VAL CG1 HG12 sing N N 403 VAL CG1 HG13 sing N N 404 VAL CG2 HG21 sing N N 405 VAL CG2 HG22 sing N N 406 VAL CG2 HG23 sing N N 407 VAL OXT HXT sing N N 408 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2DX8 _pdbx_initial_refinement_model.details ? #