data_2Z10 # _entry.id 2Z10 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Z10 RCSB RCSB027384 WWPDB D_1000027384 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001865.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Z10 _pdbx_database_status.recvd_initial_deposition_date 2007-05-07 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Murayama, K.' 1 'Kato-Murayama, M.' 2 'Terada, T.' 3 'Kuramitsu, S.' 4 'Shirouzu, M.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title ;Genetic Encoding of 3-Iodo-l-Tyrosine in Escherichia coli for Single-Wavelength Anomalous Dispersion Phasing in Protein Crystallography ; _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 335 _citation.page_last 344 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19278648 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.01.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sakamoto, K.' 1 primary 'Murayama, K.' 2 primary 'Oki, K.' 3 primary 'Iraha, F.' 4 primary 'Kato-Murayama, M.' 5 primary 'Takahashi, M.' 6 primary 'Ohtake, K.' 7 primary 'Kobayashi, T.' 8 primary 'Kuramitsu, S.' 9 primary 'Shirouzu, M.' 10 primary 'Yokoyama, S.' 11 # _cell.entry_id 2Z10 _cell.length_a 71.401 _cell.length_b 71.401 _cell.length_c 99.255 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Z10 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribosomal-protein-alanine acetyltransferase' 22288.467 1 2.3.1.128 ? ? ? 2 water nat water 18.015 184 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISV IAPEPEHAKLELGTMLFKPFWGSPANKEAK(IYR)LLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNR RLPDGAFRDDVVYSVLKEEWPGVKARLEARLYGASGNP ; _entity_poly.pdbx_seq_one_letter_code_can ;MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISV IAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPD GAFRDDVVYSVLKEEWPGVKARLEARLYGASGNP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001865.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 TRP n 1 3 ALA n 1 4 PHE n 1 5 PRO n 1 6 GLU n 1 7 ARG n 1 8 PHE n 1 9 GLU n 1 10 GLY n 1 11 ARG n 1 12 HIS n 1 13 VAL n 1 14 ARG n 1 15 LEU n 1 16 GLU n 1 17 PRO n 1 18 LEU n 1 19 ALA n 1 20 LEU n 1 21 ALA n 1 22 HIS n 1 23 LEU n 1 24 PRO n 1 25 ALA n 1 26 PHE n 1 27 LEU n 1 28 ARG n 1 29 HIS n 1 30 TYR n 1 31 ASP n 1 32 PRO n 1 33 GLU n 1 34 VAL n 1 35 TYR n 1 36 ARG n 1 37 PHE n 1 38 LEU n 1 39 SER n 1 40 ARG n 1 41 ALA n 1 42 PRO n 1 43 VAL n 1 44 ALA n 1 45 PRO n 1 46 THR n 1 47 GLU n 1 48 GLU n 1 49 ALA n 1 50 LEU n 1 51 ARG n 1 52 ALA n 1 53 HIS n 1 54 LEU n 1 55 GLU n 1 56 GLY n 1 57 LEU n 1 58 LEU n 1 59 GLY n 1 60 GLU n 1 61 PRO n 1 62 GLY n 1 63 ARG n 1 64 VAL n 1 65 ASN n 1 66 TRP n 1 67 ALA n 1 68 ILE n 1 69 LEU n 1 70 PHE n 1 71 GLY n 1 72 LYS n 1 73 GLU n 1 74 VAL n 1 75 ALA n 1 76 GLY n 1 77 ARG n 1 78 ILE n 1 79 SER n 1 80 VAL n 1 81 ILE n 1 82 ALA n 1 83 PRO n 1 84 GLU n 1 85 PRO n 1 86 GLU n 1 87 HIS n 1 88 ALA n 1 89 LYS n 1 90 LEU n 1 91 GLU n 1 92 LEU n 1 93 GLY n 1 94 THR n 1 95 MET n 1 96 LEU n 1 97 PHE n 1 98 LYS n 1 99 PRO n 1 100 PHE n 1 101 TRP n 1 102 GLY n 1 103 SER n 1 104 PRO n 1 105 ALA n 1 106 ASN n 1 107 LYS n 1 108 GLU n 1 109 ALA n 1 110 LYS n 1 111 IYR n 1 112 LEU n 1 113 LEU n 1 114 LEU n 1 115 ARG n 1 116 HIS n 1 117 ALA n 1 118 PHE n 1 119 GLU n 1 120 VAL n 1 121 LEU n 1 122 ARG n 1 123 ALA n 1 124 GLU n 1 125 ARG n 1 126 VAL n 1 127 GLN n 1 128 PHE n 1 129 LYS n 1 130 VAL n 1 131 ASP n 1 132 LEU n 1 133 ARG n 1 134 ASN n 1 135 GLU n 1 136 ARG n 1 137 SER n 1 138 GLN n 1 139 ARG n 1 140 ALA n 1 141 LEU n 1 142 GLU n 1 143 ALA n 1 144 LEU n 1 145 GLY n 1 146 ALA n 1 147 VAL n 1 148 ARG n 1 149 GLU n 1 150 GLY n 1 151 VAL n 1 152 LEU n 1 153 ARG n 1 154 LYS n 1 155 ASN n 1 156 ARG n 1 157 ARG n 1 158 LEU n 1 159 PRO n 1 160 ASP n 1 161 GLY n 1 162 ALA n 1 163 PHE n 1 164 ARG n 1 165 ASP n 1 166 ASP n 1 167 VAL n 1 168 VAL n 1 169 TYR n 1 170 SER n 1 171 VAL n 1 172 LEU n 1 173 LYS n 1 174 GLU n 1 175 GLU n 1 176 TRP n 1 177 PRO n 1 178 GLY n 1 179 VAL n 1 180 LYS n 1 181 ALA n 1 182 ARG n 1 183 LEU n 1 184 GLU n 1 185 ALA n 1 186 ARG n 1 187 LEU n 1 188 TYR n 1 189 GLY n 1 190 ALA n 1 191 SER n 1 192 GLY n 1 193 ASN n 1 194 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB27 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 262724 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q72HN8_THET2 _struct_ref.pdbx_db_accession Q72HN8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISV IAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPD GAFRDDVVYSVLKEEWPGVKARLEARLYGASGNP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Z10 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 194 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q72HN8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 194 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 194 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IYR 'L-peptide linking' n 3-IODO-TYROSINE ? 'C9 H10 I N O3' 307.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Z10 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_percent_sol 62.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '0.15M ammonium acetate, 0.1M bis-tris pH5.5, 28% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-07-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 2Z10 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.77 _reflns.number_obs 28933 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.042 _reflns.pdbx_netI_over_sigmaI 34.3 _reflns.B_iso_Wilson_estimate 25.0 _reflns.pdbx_redundancy 9.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.77 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 90.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.266 _reflns_shell.meanI_over_sigI_obs 8.9 _reflns_shell.pdbx_redundancy 9.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Z10 _refine.ls_number_reflns_obs 28876 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1264710.68 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.92 _refine.ls_d_res_high 1.77 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1413 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.0 _refine.aniso_B[1][1] 4.31 _refine.aniso_B[2][2] 4.31 _refine.aniso_B[3][3] -8.62 _refine.aniso_B[1][2] 0.75 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.348736 _refine.solvent_model_param_bsol 48.5752 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2Z10 _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.08 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.12 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1535 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 184 _refine_hist.number_atoms_total 1719 _refine_hist.d_res_high 1.77 _refine_hist.d_res_low 30.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.5 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.98 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.35 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.00 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.41 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.66 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.77 _refine_ls_shell.d_res_low 1.88 _refine_ls_shell.number_reflns_R_work 4390 _refine_ls_shell.R_factor_R_work 0.266 _refine_ls_shell.percent_reflns_obs 96.6 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 229 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2Z10 _struct.title 'Crystal structure of putative acetyltransferase' _struct.pdbx_descriptor 'Ribosomal-protein-alanine acetyltransferase (E.C.2.3.1.128)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z10 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;alpha/beta protein, Acyltransferase, Transferase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 19 ? ALA A 21 ? ALA A 19 ALA A 21 5 ? 3 HELX_P HELX_P2 2 HIS A 22 ? HIS A 29 ? HIS A 22 HIS A 29 1 ? 8 HELX_P HELX_P3 3 ASP A 31 ? ARG A 36 ? ASP A 31 ARG A 36 1 ? 6 HELX_P HELX_P4 4 THR A 46 ? GLU A 60 ? THR A 46 GLU A 60 1 ? 15 HELX_P HELX_P5 5 PRO A 85 ? HIS A 87 ? PRO A 85 HIS A 87 5 ? 3 HELX_P HELX_P6 6 LYS A 98 ? TRP A 101 ? LYS A 98 TRP A 101 5 ? 4 HELX_P HELX_P7 7 PRO A 104 ? VAL A 120 ? PRO A 104 VAL A 120 1 ? 17 HELX_P HELX_P8 8 ASN A 134 ? GLY A 145 ? ASN A 134 GLY A 145 1 ? 12 HELX_P HELX_P9 9 GLU A 175 ? TYR A 188 ? GLU A 175 TYR A 188 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 110 C ? ? ? 1_555 A IYR 111 N ? ? A LYS 110 A IYR 111 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A IYR 111 C ? ? ? 1_555 A LEU 112 N ? ? A IYR 111 A LEU 112 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 8 ? GLU A 9 ? PHE A 8 GLU A 9 A 2 VAL A 13 ? PRO A 17 ? VAL A 13 PRO A 17 A 3 VAL A 64 ? PHE A 70 ? VAL A 64 PHE A 70 A 4 GLU A 73 ? GLU A 84 ? GLU A 73 GLU A 84 A 5 LYS A 89 ? LEU A 96 ? LYS A 89 LEU A 96 A 6 ARG A 125 ? ASP A 131 ? ARG A 125 ASP A 131 A 7 PHE A 163 ? LEU A 172 ? PHE A 163 LEU A 172 A 8 VAL A 147 ? ARG A 157 ? VAL A 147 ARG A 157 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 8 ? N PHE A 8 O LEU A 15 ? O LEU A 15 A 2 3 N ARG A 14 ? N ARG A 14 O LEU A 69 ? O LEU A 69 A 3 4 N ILE A 68 ? N ILE A 68 O ALA A 75 ? O ALA A 75 A 4 5 N GLU A 84 ? N GLU A 84 O LYS A 89 ? O LYS A 89 A 5 6 N LEU A 90 ? N LEU A 90 O GLN A 127 ? O GLN A 127 A 6 7 N VAL A 130 ? N VAL A 130 O VAL A 167 ? O VAL A 167 A 7 8 O ASP A 166 ? O ASP A 166 N LEU A 152 ? N LEU A 152 # _database_PDB_matrix.entry_id 2Z10 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Z10 _atom_sites.fract_transf_matrix[1][1] 0.014005 _atom_sites.fract_transf_matrix[1][2] 0.008086 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016172 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010075 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 TRP 2 2 2 TRP TRP A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 HIS 87 87 87 HIS HIS A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 MET 95 95 95 MET MET A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 TRP 101 101 101 TRP TRP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 IYR 111 111 111 IYR IYR A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 HIS 116 116 116 HIS HIS A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 ASN 155 155 155 ASN ASN A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 GLU 175 175 175 GLU GLU A . n A 1 176 TRP 176 176 176 TRP TRP A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 ARG 182 182 182 ARG ARG A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 TYR 188 188 188 TYR TYR A . n A 1 189 GLY 189 189 ? ? ? A . n A 1 190 ALA 190 190 ? ? ? A . n A 1 191 SER 191 191 ? ? ? A . n A 1 192 GLY 192 192 ? ? ? A . n A 1 193 ASN 193 193 ? ? ? A . n A 1 194 PRO 194 194 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 195 1 HOH HOH A . B 2 HOH 2 196 2 HOH HOH A . B 2 HOH 3 197 3 HOH HOH A . B 2 HOH 4 198 4 HOH HOH A . B 2 HOH 5 199 5 HOH HOH A . B 2 HOH 6 200 6 HOH HOH A . B 2 HOH 7 201 7 HOH HOH A . B 2 HOH 8 202 8 HOH HOH A . B 2 HOH 9 203 9 HOH HOH A . B 2 HOH 10 204 10 HOH HOH A . B 2 HOH 11 205 11 HOH HOH A . B 2 HOH 12 206 12 HOH HOH A . B 2 HOH 13 207 13 HOH HOH A . B 2 HOH 14 208 14 HOH HOH A . B 2 HOH 15 209 15 HOH HOH A . B 2 HOH 16 210 16 HOH HOH A . B 2 HOH 17 211 17 HOH HOH A . B 2 HOH 18 212 18 HOH HOH A . B 2 HOH 19 213 19 HOH HOH A . B 2 HOH 20 214 20 HOH HOH A . B 2 HOH 21 215 21 HOH HOH A . B 2 HOH 22 216 22 HOH HOH A . B 2 HOH 23 217 23 HOH HOH A . B 2 HOH 24 218 24 HOH HOH A . B 2 HOH 25 219 25 HOH HOH A . B 2 HOH 26 220 26 HOH HOH A . B 2 HOH 27 221 27 HOH HOH A . B 2 HOH 28 222 28 HOH HOH A . B 2 HOH 29 223 29 HOH HOH A . B 2 HOH 30 224 30 HOH HOH A . B 2 HOH 31 225 31 HOH HOH A . B 2 HOH 32 226 32 HOH HOH A . B 2 HOH 33 227 33 HOH HOH A . B 2 HOH 34 228 34 HOH HOH A . B 2 HOH 35 229 35 HOH HOH A . B 2 HOH 36 230 36 HOH HOH A . B 2 HOH 37 231 37 HOH HOH A . B 2 HOH 38 232 38 HOH HOH A . B 2 HOH 39 233 39 HOH HOH A . B 2 HOH 40 234 40 HOH HOH A . B 2 HOH 41 235 41 HOH HOH A . B 2 HOH 42 236 42 HOH HOH A . B 2 HOH 43 237 43 HOH HOH A . B 2 HOH 44 238 44 HOH HOH A . B 2 HOH 45 239 45 HOH HOH A . B 2 HOH 46 240 46 HOH HOH A . B 2 HOH 47 241 47 HOH HOH A . B 2 HOH 48 242 48 HOH HOH A . B 2 HOH 49 243 49 HOH HOH A . B 2 HOH 50 244 50 HOH HOH A . B 2 HOH 51 245 51 HOH HOH A . B 2 HOH 52 246 52 HOH HOH A . B 2 HOH 53 247 53 HOH HOH A . B 2 HOH 54 248 54 HOH HOH A . B 2 HOH 55 249 55 HOH HOH A . B 2 HOH 56 250 56 HOH HOH A . B 2 HOH 57 251 57 HOH HOH A . B 2 HOH 58 252 58 HOH HOH A . B 2 HOH 59 253 59 HOH HOH A . B 2 HOH 60 254 60 HOH HOH A . B 2 HOH 61 255 61 HOH HOH A . B 2 HOH 62 256 62 HOH HOH A . B 2 HOH 63 257 63 HOH HOH A . B 2 HOH 64 258 64 HOH HOH A . B 2 HOH 65 259 65 HOH HOH A . B 2 HOH 66 260 66 HOH HOH A . B 2 HOH 67 261 67 HOH HOH A . B 2 HOH 68 262 68 HOH HOH A . B 2 HOH 69 263 69 HOH HOH A . B 2 HOH 70 264 70 HOH HOH A . B 2 HOH 71 265 71 HOH HOH A . B 2 HOH 72 266 72 HOH HOH A . B 2 HOH 73 267 73 HOH HOH A . B 2 HOH 74 268 74 HOH HOH A . B 2 HOH 75 269 75 HOH HOH A . B 2 HOH 76 270 76 HOH HOH A . B 2 HOH 77 271 77 HOH HOH A . B 2 HOH 78 272 78 HOH HOH A . B 2 HOH 79 273 79 HOH HOH A . B 2 HOH 80 274 80 HOH HOH A . B 2 HOH 81 275 81 HOH HOH A . B 2 HOH 82 276 82 HOH HOH A . B 2 HOH 83 277 83 HOH HOH A . B 2 HOH 84 278 84 HOH HOH A . B 2 HOH 85 279 85 HOH HOH A . B 2 HOH 86 280 86 HOH HOH A . B 2 HOH 87 281 87 HOH HOH A . B 2 HOH 88 282 88 HOH HOH A . B 2 HOH 89 283 89 HOH HOH A . B 2 HOH 90 284 90 HOH HOH A . B 2 HOH 91 285 91 HOH HOH A . B 2 HOH 92 286 92 HOH HOH A . B 2 HOH 93 287 93 HOH HOH A . B 2 HOH 94 288 94 HOH HOH A . B 2 HOH 95 289 95 HOH HOH A . B 2 HOH 96 290 96 HOH HOH A . B 2 HOH 97 291 97 HOH HOH A . B 2 HOH 98 292 98 HOH HOH A . B 2 HOH 99 293 99 HOH HOH A . B 2 HOH 100 294 100 HOH HOH A . B 2 HOH 101 295 101 HOH HOH A . B 2 HOH 102 296 102 HOH HOH A . B 2 HOH 103 297 103 HOH HOH A . B 2 HOH 104 298 104 HOH HOH A . B 2 HOH 105 299 105 HOH HOH A . B 2 HOH 106 300 106 HOH HOH A . B 2 HOH 107 301 107 HOH HOH A . B 2 HOH 108 302 108 HOH HOH A . B 2 HOH 109 303 109 HOH HOH A . B 2 HOH 110 304 110 HOH HOH A . B 2 HOH 111 305 111 HOH HOH A . B 2 HOH 112 306 112 HOH HOH A . B 2 HOH 113 307 113 HOH HOH A . B 2 HOH 114 308 114 HOH HOH A . B 2 HOH 115 309 115 HOH HOH A . B 2 HOH 116 310 116 HOH HOH A . B 2 HOH 117 311 117 HOH HOH A . B 2 HOH 118 312 118 HOH HOH A . B 2 HOH 119 313 119 HOH HOH A . B 2 HOH 120 314 120 HOH HOH A . B 2 HOH 121 315 121 HOH HOH A . B 2 HOH 122 316 122 HOH HOH A . B 2 HOH 123 317 123 HOH HOH A . B 2 HOH 124 318 124 HOH HOH A . B 2 HOH 125 319 125 HOH HOH A . B 2 HOH 126 320 126 HOH HOH A . B 2 HOH 127 321 127 HOH HOH A . B 2 HOH 128 322 128 HOH HOH A . B 2 HOH 129 323 129 HOH HOH A . B 2 HOH 130 324 130 HOH HOH A . B 2 HOH 131 325 131 HOH HOH A . B 2 HOH 132 326 132 HOH HOH A . B 2 HOH 133 327 133 HOH HOH A . B 2 HOH 134 328 134 HOH HOH A . B 2 HOH 135 329 135 HOH HOH A . B 2 HOH 136 330 136 HOH HOH A . B 2 HOH 137 331 137 HOH HOH A . B 2 HOH 138 332 138 HOH HOH A . B 2 HOH 139 333 139 HOH HOH A . B 2 HOH 140 334 140 HOH HOH A . B 2 HOH 141 335 141 HOH HOH A . B 2 HOH 142 336 142 HOH HOH A . B 2 HOH 143 337 143 HOH HOH A . B 2 HOH 144 338 144 HOH HOH A . B 2 HOH 145 339 145 HOH HOH A . B 2 HOH 146 340 146 HOH HOH A . B 2 HOH 147 341 147 HOH HOH A . B 2 HOH 148 342 148 HOH HOH A . B 2 HOH 149 343 149 HOH HOH A . B 2 HOH 150 344 150 HOH HOH A . B 2 HOH 151 345 151 HOH HOH A . B 2 HOH 152 346 152 HOH HOH A . B 2 HOH 153 347 153 HOH HOH A . B 2 HOH 154 348 154 HOH HOH A . B 2 HOH 155 349 155 HOH HOH A . B 2 HOH 156 350 156 HOH HOH A . B 2 HOH 157 351 157 HOH HOH A . B 2 HOH 158 352 158 HOH HOH A . B 2 HOH 159 353 159 HOH HOH A . B 2 HOH 160 354 160 HOH HOH A . B 2 HOH 161 355 161 HOH HOH A . B 2 HOH 162 356 162 HOH HOH A . B 2 HOH 163 357 163 HOH HOH A . B 2 HOH 164 358 164 HOH HOH A . B 2 HOH 165 359 165 HOH HOH A . B 2 HOH 166 360 166 HOH HOH A . B 2 HOH 167 361 167 HOH HOH A . B 2 HOH 168 362 168 HOH HOH A . B 2 HOH 169 363 169 HOH HOH A . B 2 HOH 170 364 170 HOH HOH A . B 2 HOH 171 365 171 HOH HOH A . B 2 HOH 172 366 172 HOH HOH A . B 2 HOH 173 367 173 HOH HOH A . B 2 HOH 174 368 174 HOH HOH A . B 2 HOH 175 369 175 HOH HOH A . B 2 HOH 176 370 176 HOH HOH A . B 2 HOH 177 371 177 HOH HOH A . B 2 HOH 178 372 178 HOH HOH A . B 2 HOH 179 373 179 HOH HOH A . B 2 HOH 180 374 180 HOH HOH A . B 2 HOH 181 375 181 HOH HOH A . B 2 HOH 182 376 182 HOH HOH A . B 2 HOH 183 377 183 HOH HOH A . B 2 HOH 184 378 184 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id IYR _pdbx_struct_mod_residue.label_seq_id 111 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id IYR _pdbx_struct_mod_residue.auth_seq_id 111 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details 3-IODO-TYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2030 ? 1 MORE -0 ? 1 'SSA (A^2)' 17380 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 123.6701597112 0.0000000000 0.0000000000 -1.0000000000 33.0850000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 189 ? A GLY 189 2 1 Y 1 A ALA 190 ? A ALA 190 3 1 Y 1 A SER 191 ? A SER 191 4 1 Y 1 A GLY 192 ? A GLY 192 5 1 Y 1 A ASN 193 ? A ASN 193 6 1 Y 1 A PRO 194 ? A PRO 194 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #