HEADER LYASE 29-OCT-07 2ZBT TITLE CRYSTAL STRUCTURE OF PYRIDOXINE BIOSYNTHESIS PROTEIN FROM THERMUS TITLE 2 THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAL BIOSYNTHESIS LYASE PDXS; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 4.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: PDXS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS PYRIDOXINE BIOSYNTHESIS, LYASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR M.MANZOKU,A.EBIHARA,Y.FUJIMOTO,S.YOKOYAMA,S.KURAMITSU,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 13-MAR-24 2ZBT 1 REMARK REVDAT 3 13-JUL-11 2ZBT 1 VERSN REVDAT 2 24-FEB-09 2ZBT 1 VERSN REVDAT 1 18-DEC-07 2ZBT 0 JRNL AUTH M.MANZOKU,A.EBIHARA,Y.FUJIMOTO,S.YOKOYAMA,S.KURAMITSU JRNL TITL CRYSTAL STRUCTURE OF PYRIDOXINE BIOSYNTHESIS PROTEIN FROM JRNL TITL 2 THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3622417.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 148028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 14786 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 22267 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2408 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.005 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 622 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 1.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.080 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.710 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.830 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.660 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 39.24 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : MPD_XPLOR.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : MPD_XPLOR.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000027773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-05; 22-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL26B2; BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97904, 0.9000, 0.97942; 1.0000 REMARK 200 MONOCHROMATOR : SI DOUBLE-CRYSTAL; SI DOUBLE REMARK 200 -CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210; RIGAKU REMARK 200 JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 148066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE PH6.7, 22.5% MPD, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 90.48500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.24154 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.58333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 90.48500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 52.24154 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.58333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 90.48500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 52.24154 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.58333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 104.48308 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 67.16667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 104.48308 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 67.16667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 104.48308 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.16667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 52260 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 279 REMARK 465 GLY A 280 REMARK 465 ILE A 281 REMARK 465 ASN A 282 REMARK 465 LEU A 283 REMARK 465 ASP A 284 REMARK 465 GLN A 285 REMARK 465 LEU A 286 REMARK 465 LYS A 287 REMARK 465 GLU A 288 REMARK 465 GLU A 289 REMARK 465 GLU A 290 REMARK 465 ARG A 291 REMARK 465 LEU A 292 REMARK 465 ALA A 293 REMARK 465 LYS A 294 REMARK 465 ARG A 295 REMARK 465 GLY A 296 REMARK 465 TRP A 297 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 VAL B 279 REMARK 465 GLY B 280 REMARK 465 ILE B 281 REMARK 465 ASN B 282 REMARK 465 LEU B 283 REMARK 465 ASP B 284 REMARK 465 GLN B 285 REMARK 465 LEU B 286 REMARK 465 LYS B 287 REMARK 465 GLU B 288 REMARK 465 GLU B 289 REMARK 465 GLU B 290 REMARK 465 ARG B 291 REMARK 465 LEU B 292 REMARK 465 ALA B 293 REMARK 465 LYS B 294 REMARK 465 ARG B 295 REMARK 465 GLY B 296 REMARK 465 TRP B 297 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 GLY C 3 REMARK 465 GLY C 4 REMARK 465 MET C 5 REMARK 465 GLU C 6 REMARK 465 LYS C 7 REMARK 465 GLY C 8 REMARK 465 VAL C 279 REMARK 465 GLY C 280 REMARK 465 ILE C 281 REMARK 465 ASN C 282 REMARK 465 LEU C 283 REMARK 465 ASP C 284 REMARK 465 GLN C 285 REMARK 465 LEU C 286 REMARK 465 LYS C 287 REMARK 465 GLU C 288 REMARK 465 GLU C 289 REMARK 465 GLU C 290 REMARK 465 ARG C 291 REMARK 465 LEU C 292 REMARK 465 ALA C 293 REMARK 465 LYS C 294 REMARK 465 ARG C 295 REMARK 465 GLY C 296 REMARK 465 TRP C 297 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 GLY D 3 REMARK 465 GLY D 4 REMARK 465 VAL D 279 REMARK 465 GLY D 280 REMARK 465 ILE D 281 REMARK 465 ASN D 282 REMARK 465 LEU D 283 REMARK 465 ASP D 284 REMARK 465 GLN D 285 REMARK 465 LEU D 286 REMARK 465 LYS D 287 REMARK 465 GLU D 288 REMARK 465 GLU D 289 REMARK 465 GLU D 290 REMARK 465 ARG D 291 REMARK 465 LEU D 292 REMARK 465 ALA D 293 REMARK 465 LYS D 294 REMARK 465 ARG D 295 REMARK 465 GLY D 296 REMARK 465 TRP D 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 LYS D 7 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 157 -32.04 -136.31 REMARK 500 THR C 157 -30.74 -135.83 REMARK 500 SER C 239 1.31 -63.83 REMARK 500 LYS C 243 -30.71 -138.83 REMARK 500 LYS D 13 78.16 -67.70 REMARK 500 PHE D 242 38.99 -91.89 REMARK 500 LYS D 243 -13.89 -159.24 REMARK 500 SER D 244 31.49 -87.51 REMARK 500 ASP D 246 71.84 46.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003001575.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST IN UNIPROT. THIS SEQUENCE WILL BE DEPOSITED IN THE SEQUENCE REMARK 999 DATABASE. DBREF 2ZBT A 1 297 PDB 2ZBT 2ZBT 1 297 DBREF 2ZBT B 1 297 PDB 2ZBT 2ZBT 1 297 DBREF 2ZBT C 1 297 PDB 2ZBT 2ZBT 1 297 DBREF 2ZBT D 1 297 PDB 2ZBT 2ZBT 1 297 SEQRES 1 A 297 MET GLU GLY GLY MET GLU LYS GLY THR PHE GLN ILE LYS SEQRES 2 A 297 THR GLY PHE ALA GLU MET PHE LYS GLY GLY VAL ILE MET SEQRES 3 A 297 ASP VAL THR THR PRO GLU GLN ALA VAL ILE ALA GLU GLU SEQRES 4 A 297 ALA GLY ALA VAL ALA VAL MET ALA LEU GLU ARG VAL PRO SEQRES 5 A 297 ALA ASP ILE ARG ALA GLN GLY GLY VAL ALA ARG MET SER SEQRES 6 A 297 ASP PRO LYS ILE ILE LYS GLU ILE MET ALA ALA VAL SER SEQRES 7 A 297 ILE PRO VAL MET ALA LYS VAL ARG ILE GLY HIS PHE VAL SEQRES 8 A 297 GLU ALA MET ILE LEU GLU ALA ILE GLY VAL ASP PHE ILE SEQRES 9 A 297 ASP GLU SER GLU VAL LEU THR PRO ALA ASP GLU GLU HIS SEQRES 10 A 297 HIS ILE ASP LYS TRP LYS PHE LYS VAL PRO PHE VAL CYS SEQRES 11 A 297 GLY ALA ARG ASN LEU GLY GLU ALA LEU ARG ARG ILE ALA SEQRES 12 A 297 GLU GLY ALA ALA MET ILE ARG THR LYS GLY GLU ALA GLY SEQRES 13 A 297 THR GLY ASN VAL VAL GLU ALA VAL ARG HIS ALA ARG THR SEQRES 14 A 297 MET TRP LYS GLU ILE ARG TYR VAL GLN SER LEU ARG GLU SEQRES 15 A 297 ASP GLU LEU MET ALA TYR ALA LYS GLU ILE GLY ALA PRO SEQRES 16 A 297 PHE GLU LEU VAL LYS TRP VAL HIS ASP HIS GLY ARG LEU SEQRES 17 A 297 PRO VAL VAL ASN PHE ALA ALA GLY GLY ILE ALA THR PRO SEQRES 18 A 297 ALA ASP ALA ALA LEU MET MET HIS LEU GLY MET ASP GLY SEQRES 19 A 297 VAL PHE VAL GLY SER GLY ILE PHE LYS SER GLY ASP PRO SEQRES 20 A 297 ARG LYS ARG ALA ARG ALA ILE VAL ARG ALA VAL ALA HIS SEQRES 21 A 297 TYR ASN ASP PRO GLU VAL LEU ALA GLU VAL SER GLU ASP SEQRES 22 A 297 LEU GLY GLU PRO MET VAL GLY ILE ASN LEU ASP GLN LEU SEQRES 23 A 297 LYS GLU GLU GLU ARG LEU ALA LYS ARG GLY TRP SEQRES 1 B 297 MET GLU GLY GLY MET GLU LYS GLY THR PHE GLN ILE LYS SEQRES 2 B 297 THR GLY PHE ALA GLU MET PHE LYS GLY GLY VAL ILE MET SEQRES 3 B 297 ASP VAL THR THR PRO GLU GLN ALA VAL ILE ALA GLU GLU SEQRES 4 B 297 ALA GLY ALA VAL ALA VAL MET ALA LEU GLU ARG VAL PRO SEQRES 5 B 297 ALA ASP ILE ARG ALA GLN GLY GLY VAL ALA ARG MET SER SEQRES 6 B 297 ASP PRO LYS ILE ILE LYS GLU ILE MET ALA ALA VAL SER SEQRES 7 B 297 ILE PRO VAL MET ALA LYS VAL ARG ILE GLY HIS PHE VAL SEQRES 8 B 297 GLU ALA MET ILE LEU GLU ALA ILE GLY VAL ASP PHE ILE SEQRES 9 B 297 ASP GLU SER GLU VAL LEU THR PRO ALA ASP GLU GLU HIS SEQRES 10 B 297 HIS ILE ASP LYS TRP LYS PHE LYS VAL PRO PHE VAL CYS SEQRES 11 B 297 GLY ALA ARG ASN LEU GLY GLU ALA LEU ARG ARG ILE ALA SEQRES 12 B 297 GLU GLY ALA ALA MET ILE ARG THR LYS GLY GLU ALA GLY SEQRES 13 B 297 THR GLY ASN VAL VAL GLU ALA VAL ARG HIS ALA ARG THR SEQRES 14 B 297 MET TRP LYS GLU ILE ARG TYR VAL GLN SER LEU ARG GLU SEQRES 15 B 297 ASP GLU LEU MET ALA TYR ALA LYS GLU ILE GLY ALA PRO SEQRES 16 B 297 PHE GLU LEU VAL LYS TRP VAL HIS ASP HIS GLY ARG LEU SEQRES 17 B 297 PRO VAL VAL ASN PHE ALA ALA GLY GLY ILE ALA THR PRO SEQRES 18 B 297 ALA ASP ALA ALA LEU MET MET HIS LEU GLY MET ASP GLY SEQRES 19 B 297 VAL PHE VAL GLY SER GLY ILE PHE LYS SER GLY ASP PRO SEQRES 20 B 297 ARG LYS ARG ALA ARG ALA ILE VAL ARG ALA VAL ALA HIS SEQRES 21 B 297 TYR ASN ASP PRO GLU VAL LEU ALA GLU VAL SER GLU ASP SEQRES 22 B 297 LEU GLY GLU PRO MET VAL GLY ILE ASN LEU ASP GLN LEU SEQRES 23 B 297 LYS GLU GLU GLU ARG LEU ALA LYS ARG GLY TRP SEQRES 1 C 297 MET GLU GLY GLY MET GLU LYS GLY THR PHE GLN ILE LYS SEQRES 2 C 297 THR GLY PHE ALA GLU MET PHE LYS GLY GLY VAL ILE MET SEQRES 3 C 297 ASP VAL THR THR PRO GLU GLN ALA VAL ILE ALA GLU GLU SEQRES 4 C 297 ALA GLY ALA VAL ALA VAL MET ALA LEU GLU ARG VAL PRO SEQRES 5 C 297 ALA ASP ILE ARG ALA GLN GLY GLY VAL ALA ARG MET SER SEQRES 6 C 297 ASP PRO LYS ILE ILE LYS GLU ILE MET ALA ALA VAL SER SEQRES 7 C 297 ILE PRO VAL MET ALA LYS VAL ARG ILE GLY HIS PHE VAL SEQRES 8 C 297 GLU ALA MET ILE LEU GLU ALA ILE GLY VAL ASP PHE ILE SEQRES 9 C 297 ASP GLU SER GLU VAL LEU THR PRO ALA ASP GLU GLU HIS SEQRES 10 C 297 HIS ILE ASP LYS TRP LYS PHE LYS VAL PRO PHE VAL CYS SEQRES 11 C 297 GLY ALA ARG ASN LEU GLY GLU ALA LEU ARG ARG ILE ALA SEQRES 12 C 297 GLU GLY ALA ALA MET ILE ARG THR LYS GLY GLU ALA GLY SEQRES 13 C 297 THR GLY ASN VAL VAL GLU ALA VAL ARG HIS ALA ARG THR SEQRES 14 C 297 MET TRP LYS GLU ILE ARG TYR VAL GLN SER LEU ARG GLU SEQRES 15 C 297 ASP GLU LEU MET ALA TYR ALA LYS GLU ILE GLY ALA PRO SEQRES 16 C 297 PHE GLU LEU VAL LYS TRP VAL HIS ASP HIS GLY ARG LEU SEQRES 17 C 297 PRO VAL VAL ASN PHE ALA ALA GLY GLY ILE ALA THR PRO SEQRES 18 C 297 ALA ASP ALA ALA LEU MET MET HIS LEU GLY MET ASP GLY SEQRES 19 C 297 VAL PHE VAL GLY SER GLY ILE PHE LYS SER GLY ASP PRO SEQRES 20 C 297 ARG LYS ARG ALA ARG ALA ILE VAL ARG ALA VAL ALA HIS SEQRES 21 C 297 TYR ASN ASP PRO GLU VAL LEU ALA GLU VAL SER GLU ASP SEQRES 22 C 297 LEU GLY GLU PRO MET VAL GLY ILE ASN LEU ASP GLN LEU SEQRES 23 C 297 LYS GLU GLU GLU ARG LEU ALA LYS ARG GLY TRP SEQRES 1 D 297 MET GLU GLY GLY MET GLU LYS GLY THR PHE GLN ILE LYS SEQRES 2 D 297 THR GLY PHE ALA GLU MET PHE LYS GLY GLY VAL ILE MET SEQRES 3 D 297 ASP VAL THR THR PRO GLU GLN ALA VAL ILE ALA GLU GLU SEQRES 4 D 297 ALA GLY ALA VAL ALA VAL MET ALA LEU GLU ARG VAL PRO SEQRES 5 D 297 ALA ASP ILE ARG ALA GLN GLY GLY VAL ALA ARG MET SER SEQRES 6 D 297 ASP PRO LYS ILE ILE LYS GLU ILE MET ALA ALA VAL SER SEQRES 7 D 297 ILE PRO VAL MET ALA LYS VAL ARG ILE GLY HIS PHE VAL SEQRES 8 D 297 GLU ALA MET ILE LEU GLU ALA ILE GLY VAL ASP PHE ILE SEQRES 9 D 297 ASP GLU SER GLU VAL LEU THR PRO ALA ASP GLU GLU HIS SEQRES 10 D 297 HIS ILE ASP LYS TRP LYS PHE LYS VAL PRO PHE VAL CYS SEQRES 11 D 297 GLY ALA ARG ASN LEU GLY GLU ALA LEU ARG ARG ILE ALA SEQRES 12 D 297 GLU GLY ALA ALA MET ILE ARG THR LYS GLY GLU ALA GLY SEQRES 13 D 297 THR GLY ASN VAL VAL GLU ALA VAL ARG HIS ALA ARG THR SEQRES 14 D 297 MET TRP LYS GLU ILE ARG TYR VAL GLN SER LEU ARG GLU SEQRES 15 D 297 ASP GLU LEU MET ALA TYR ALA LYS GLU ILE GLY ALA PRO SEQRES 16 D 297 PHE GLU LEU VAL LYS TRP VAL HIS ASP HIS GLY ARG LEU SEQRES 17 D 297 PRO VAL VAL ASN PHE ALA ALA GLY GLY ILE ALA THR PRO SEQRES 18 D 297 ALA ASP ALA ALA LEU MET MET HIS LEU GLY MET ASP GLY SEQRES 19 D 297 VAL PHE VAL GLY SER GLY ILE PHE LYS SER GLY ASP PRO SEQRES 20 D 297 ARG LYS ARG ALA ARG ALA ILE VAL ARG ALA VAL ALA HIS SEQRES 21 D 297 TYR ASN ASP PRO GLU VAL LEU ALA GLU VAL SER GLU ASP SEQRES 22 D 297 LEU GLY GLU PRO MET VAL GLY ILE ASN LEU ASP GLN LEU SEQRES 23 D 297 LYS GLU GLU GLU ARG LEU ALA LYS ARG GLY TRP HET MPD A 903 8 HET MPD B 904 8 HET MPD C 901 8 HET MPD D 902 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 5 MPD 4(C6 H14 O2) FORMUL 9 HOH *622(H2 O) HELIX 1 1 ALA A 17 LYS A 21 5 5 HELIX 2 2 THR A 30 GLY A 41 1 12 HELIX 3 3 VAL A 51 GLN A 58 1 8 HELIX 4 4 ASP A 66 ALA A 75 1 10 HELIX 5 5 HIS A 89 ILE A 99 1 11 HELIX 6 6 ASP A 120 PHE A 124 5 5 HELIX 7 7 ASN A 134 GLU A 144 1 11 HELIX 8 8 VAL A 160 LEU A 180 1 21 HELIX 9 9 ARG A 181 ASP A 183 5 3 HELIX 10 10 GLU A 184 GLY A 193 1 10 HELIX 11 11 PRO A 195 GLY A 206 1 12 HELIX 12 12 THR A 220 LEU A 230 1 11 HELIX 13 13 GLY A 238 SER A 244 5 7 HELIX 14 14 ASP A 246 HIS A 260 1 15 HELIX 15 15 ASP A 263 GLU A 272 1 10 HELIX 16 16 ALA B 17 LYS B 21 5 5 HELIX 17 17 THR B 30 GLY B 41 1 12 HELIX 18 18 VAL B 51 GLN B 58 1 8 HELIX 19 19 ASP B 66 VAL B 77 1 12 HELIX 20 20 HIS B 89 ILE B 99 1 11 HELIX 21 21 ASP B 120 PHE B 124 5 5 HELIX 22 22 ASN B 134 GLU B 144 1 11 HELIX 23 23 VAL B 160 LEU B 180 1 21 HELIX 24 24 ARG B 181 ASP B 183 5 3 HELIX 25 25 GLU B 184 GLY B 193 1 10 HELIX 26 26 PRO B 195 GLY B 206 1 12 HELIX 27 27 THR B 220 LEU B 230 1 11 HELIX 28 28 GLY B 238 SER B 244 5 7 HELIX 29 29 ASP B 246 HIS B 260 1 15 HELIX 30 30 ASP B 263 GLU B 272 1 10 HELIX 31 31 ALA C 17 LYS C 21 5 5 HELIX 32 32 THR C 30 GLY C 41 1 12 HELIX 33 33 VAL C 51 GLN C 58 1 8 HELIX 34 34 ASP C 66 ALA C 75 1 10 HELIX 35 35 HIS C 89 ILE C 99 1 11 HELIX 36 36 ASP C 120 PHE C 124 5 5 HELIX 37 37 ASN C 134 GLU C 144 1 11 HELIX 38 38 VAL C 160 LEU C 180 1 21 HELIX 39 39 ARG C 181 ASP C 183 5 3 HELIX 40 40 GLU C 184 ILE C 192 1 9 HELIX 41 41 PRO C 195 GLY C 206 1 12 HELIX 42 42 THR C 220 LEU C 230 1 11 HELIX 43 43 GLY C 238 LYS C 243 5 6 HELIX 44 44 ASP C 246 HIS C 260 1 15 HELIX 45 45 ASP C 263 GLU C 272 1 10 HELIX 46 46 ALA D 17 LYS D 21 5 5 HELIX 47 47 THR D 30 GLY D 41 1 12 HELIX 48 48 VAL D 51 GLN D 58 1 8 HELIX 49 49 ASP D 66 VAL D 77 1 12 HELIX 50 50 HIS D 89 ILE D 99 1 11 HELIX 51 51 ASP D 120 PHE D 124 5 5 HELIX 52 52 ASN D 134 GLU D 144 1 11 HELIX 53 53 VAL D 160 LEU D 180 1 21 HELIX 54 54 ARG D 181 ASP D 183 5 3 HELIX 55 55 GLU D 184 ILE D 192 1 9 HELIX 56 56 PRO D 195 GLY D 206 1 12 HELIX 57 57 THR D 220 LEU D 230 1 11 HELIX 58 58 GLY D 238 LYS D 243 5 6 HELIX 59 59 ASP D 246 HIS D 260 1 15 HELIX 60 60 ASP D 263 GLU D 272 1 10 SHEET 1 A 2 GLY A 4 ILE A 12 0 SHEET 2 A 2 GLU B 6 THR B 14 -1 O THR B 14 N GLY A 4 SHEET 1 B 8 ASN A 212 PHE A 213 0 SHEET 2 B 8 MET A 148 THR A 151 1 N ILE A 149 O PHE A 213 SHEET 3 B 8 PHE A 128 ALA A 132 1 N CYS A 130 O MET A 148 SHEET 4 B 8 PHE A 103 SER A 107 1 N ILE A 104 O VAL A 129 SHEET 5 B 8 VAL A 81 ARG A 86 1 N ALA A 83 O ASP A 105 SHEET 6 B 8 ALA A 44 ALA A 47 1 N VAL A 45 O MET A 82 SHEET 7 B 8 GLY A 23 VAL A 28 1 N VAL A 28 O MET A 46 SHEET 8 B 8 GLY A 234 VAL A 237 1 O VAL A 237 N ILE A 25 SHEET 1 C 8 VAL B 211 PHE B 213 0 SHEET 2 C 8 MET B 148 THR B 151 1 N ILE B 149 O PHE B 213 SHEET 3 C 8 PHE B 128 ALA B 132 1 N CYS B 130 O MET B 148 SHEET 4 C 8 PHE B 103 SER B 107 1 N ILE B 104 O VAL B 129 SHEET 5 C 8 VAL B 81 ARG B 86 1 N ALA B 83 O ASP B 105 SHEET 6 C 8 ALA B 44 ALA B 47 1 N VAL B 45 O MET B 82 SHEET 7 C 8 GLY B 23 VAL B 28 1 N MET B 26 O MET B 46 SHEET 8 C 8 GLY B 234 VAL B 237 1 O VAL B 237 N ILE B 25 SHEET 1 D 2 PHE C 10 GLN C 11 0 SHEET 2 D 2 LYS D 7 GLY D 8 -1 O GLY D 8 N PHE C 10 SHEET 1 E 8 VAL C 211 PHE C 213 0 SHEET 2 E 8 MET C 148 THR C 151 1 N ILE C 149 O PHE C 213 SHEET 3 E 8 PHE C 128 ALA C 132 1 N CYS C 130 O MET C 148 SHEET 4 E 8 PHE C 103 SER C 107 1 N ILE C 104 O VAL C 129 SHEET 5 E 8 VAL C 81 ARG C 86 1 N ALA C 83 O ASP C 105 SHEET 6 E 8 ALA C 44 ALA C 47 1 N VAL C 45 O MET C 82 SHEET 7 E 8 GLY C 23 VAL C 28 1 N VAL C 28 O MET C 46 SHEET 8 E 8 GLY C 234 VAL C 237 1 O VAL C 237 N ILE C 25 SHEET 1 F 8 VAL D 211 PHE D 213 0 SHEET 2 F 8 MET D 148 THR D 151 1 N ILE D 149 O PHE D 213 SHEET 3 F 8 PHE D 128 ALA D 132 1 N CYS D 130 O MET D 148 SHEET 4 F 8 PHE D 103 SER D 107 1 N ILE D 104 O VAL D 129 SHEET 5 F 8 VAL D 81 ARG D 86 1 N ALA D 83 O ASP D 105 SHEET 6 F 8 ALA D 44 ALA D 47 1 N VAL D 45 O MET D 82 SHEET 7 F 8 VAL D 24 VAL D 28 1 N MET D 26 O MET D 46 SHEET 8 F 8 VAL D 235 VAL D 237 1 O VAL D 237 N ILE D 25 SITE 1 AC1 7 ASP C 27 LYS C 84 ASP C 105 GLY C 216 SITE 2 AC1 7 PHE C 236 VAL C 237 GLY C 238 SITE 1 AC2 7 ASP D 27 LYS D 84 ASP D 105 GLY D 216 SITE 2 AC2 7 PHE D 236 VAL D 237 GLY D 238 SITE 1 AC3 7 ASP A 27 LYS A 84 ASP A 105 GLY A 216 SITE 2 AC3 7 PHE A 236 VAL A 237 GLY A 238 SITE 1 AC4 7 ASP B 27 LYS B 84 ASP B 105 GLY B 216 SITE 2 AC4 7 PHE B 236 VAL B 237 GLY B 238 CRYST1 180.970 180.970 100.750 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005526 0.003190 0.000000 0.00000 SCALE2 0.000000 0.006381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009926 0.00000