data_2ZF8 # _entry.id 2ZF8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ZF8 RCSB RCSB027896 WWPDB D_1000027896 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZF8 _pdbx_database_status.recvd_initial_deposition_date 2007-12-25 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Imada, K.' 1 'Kojima, S.' 2 'Namba, K.' 3 'Homma, M.' 4 # _citation.id primary _citation.title 'Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 105 _citation.page_first 7696 _citation.page_last 7701 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18505842 _citation.pdbx_database_id_DOI 10.1073/pnas.0800308105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kojima, S.' 1 primary 'Shinohara, A.' 2 primary 'Terashima, H.' 3 primary 'Yakushi, T.' 4 primary 'Sakuma, M.' 5 primary 'Homma, M.' 6 primary 'Namba, K.' 7 primary 'Imada, K.' 8 # _cell.entry_id 2ZF8 _cell.length_a 104.081 _cell.length_b 104.081 _cell.length_c 133.103 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZF8 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Component of sodium-driven polar flagellar motor' 32036.133 1 ? ? ? ? 2 water nat water 18.015 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name MotY # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VMGKRYVATPQQSQWEMVVNTPLECQLVHPIPSFGDAVFSSRANKKINLDFELKMRRPMGETRNVSLISMPPPWRPGEHA DRITNLKFFKQFDGYVGGQTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNAFSDCISNLLKYSFEDIA FTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRIQVQ GYGKRRPIADNGSPIGKDKNRRVVISLGRTQVHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;VMGKRYVATPQQSQWEMVVNTPLECQLVHPIPSFGDAVFSSRANKKINLDFELKMRRPMGETRNVSLISMPPPWRPGEHA DRITNLKFFKQFDGYVGGQTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNAFSDCISNLLKYSFEDIA FTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRIQVQ GYGKRRPIADNGSPIGKDKNRRVVISLGRTQVHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 ARG n 1 6 TYR n 1 7 VAL n 1 8 ALA n 1 9 THR n 1 10 PRO n 1 11 GLN n 1 12 GLN n 1 13 SER n 1 14 GLN n 1 15 TRP n 1 16 GLU n 1 17 MET n 1 18 VAL n 1 19 VAL n 1 20 ASN n 1 21 THR n 1 22 PRO n 1 23 LEU n 1 24 GLU n 1 25 CYS n 1 26 GLN n 1 27 LEU n 1 28 VAL n 1 29 HIS n 1 30 PRO n 1 31 ILE n 1 32 PRO n 1 33 SER n 1 34 PHE n 1 35 GLY n 1 36 ASP n 1 37 ALA n 1 38 VAL n 1 39 PHE n 1 40 SER n 1 41 SER n 1 42 ARG n 1 43 ALA n 1 44 ASN n 1 45 LYS n 1 46 LYS n 1 47 ILE n 1 48 ASN n 1 49 LEU n 1 50 ASP n 1 51 PHE n 1 52 GLU n 1 53 LEU n 1 54 LYS n 1 55 MET n 1 56 ARG n 1 57 ARG n 1 58 PRO n 1 59 MET n 1 60 GLY n 1 61 GLU n 1 62 THR n 1 63 ARG n 1 64 ASN n 1 65 VAL n 1 66 SER n 1 67 LEU n 1 68 ILE n 1 69 SER n 1 70 MET n 1 71 PRO n 1 72 PRO n 1 73 PRO n 1 74 TRP n 1 75 ARG n 1 76 PRO n 1 77 GLY n 1 78 GLU n 1 79 HIS n 1 80 ALA n 1 81 ASP n 1 82 ARG n 1 83 ILE n 1 84 THR n 1 85 ASN n 1 86 LEU n 1 87 LYS n 1 88 PHE n 1 89 PHE n 1 90 LYS n 1 91 GLN n 1 92 PHE n 1 93 ASP n 1 94 GLY n 1 95 TYR n 1 96 VAL n 1 97 GLY n 1 98 GLY n 1 99 GLN n 1 100 THR n 1 101 ALA n 1 102 TRP n 1 103 GLY n 1 104 ILE n 1 105 LEU n 1 106 SER n 1 107 GLU n 1 108 LEU n 1 109 GLU n 1 110 LYS n 1 111 GLY n 1 112 ARG n 1 113 TYR n 1 114 PRO n 1 115 THR n 1 116 PHE n 1 117 SER n 1 118 TYR n 1 119 GLN n 1 120 ASP n 1 121 TRP n 1 122 GLN n 1 123 SER n 1 124 ARG n 1 125 ASP n 1 126 GLN n 1 127 ARG n 1 128 ILE n 1 129 GLU n 1 130 VAL n 1 131 ALA n 1 132 LEU n 1 133 SER n 1 134 SER n 1 135 VAL n 1 136 LEU n 1 137 PHE n 1 138 GLN n 1 139 ASN n 1 140 LYS n 1 141 TYR n 1 142 ASN n 1 143 ALA n 1 144 PHE n 1 145 SER n 1 146 ASP n 1 147 CYS n 1 148 ILE n 1 149 SER n 1 150 ASN n 1 151 LEU n 1 152 LEU n 1 153 LYS n 1 154 TYR n 1 155 SER n 1 156 PHE n 1 157 GLU n 1 158 ASP n 1 159 ILE n 1 160 ALA n 1 161 PHE n 1 162 THR n 1 163 ILE n 1 164 LEU n 1 165 HIS n 1 166 TYR n 1 167 GLU n 1 168 ARG n 1 169 GLN n 1 170 GLY n 1 171 ASP n 1 172 GLN n 1 173 LEU n 1 174 THR n 1 175 LYS n 1 176 ALA n 1 177 SER n 1 178 LYS n 1 179 LYS n 1 180 ARG n 1 181 LEU n 1 182 SER n 1 183 GLN n 1 184 ILE n 1 185 ALA n 1 186 ASP n 1 187 TYR n 1 188 ILE n 1 189 ARG n 1 190 HIS n 1 191 ASN n 1 192 GLN n 1 193 ASP n 1 194 ILE n 1 195 ASP n 1 196 LEU n 1 197 VAL n 1 198 LEU n 1 199 VAL n 1 200 ALA n 1 201 THR n 1 202 TYR n 1 203 THR n 1 204 ASP n 1 205 SER n 1 206 THR n 1 207 ASP n 1 208 GLY n 1 209 LYS n 1 210 SER n 1 211 ALA n 1 212 SER n 1 213 GLN n 1 214 SER n 1 215 LEU n 1 216 SER n 1 217 GLU n 1 218 ARG n 1 219 ARG n 1 220 ALA n 1 221 GLU n 1 222 SER n 1 223 LEU n 1 224 ARG n 1 225 ASP n 1 226 TYR n 1 227 PHE n 1 228 GLN n 1 229 SER n 1 230 LEU n 1 231 GLY n 1 232 LEU n 1 233 PRO n 1 234 GLU n 1 235 ASP n 1 236 ARG n 1 237 ILE n 1 238 GLN n 1 239 VAL n 1 240 GLN n 1 241 GLY n 1 242 TYR n 1 243 GLY n 1 244 LYS n 1 245 ARG n 1 246 ARG n 1 247 PRO n 1 248 ILE n 1 249 ALA n 1 250 ASP n 1 251 ASN n 1 252 GLY n 1 253 SER n 1 254 PRO n 1 255 ILE n 1 256 GLY n 1 257 LYS n 1 258 ASP n 1 259 LYS n 1 260 ASN n 1 261 ARG n 1 262 ARG n 1 263 VAL n 1 264 VAL n 1 265 ILE n 1 266 SER n 1 267 LEU n 1 268 GLY n 1 269 ARG n 1 270 THR n 1 271 GLN n 1 272 VAL n 1 273 HIS n 1 274 HIS n 1 275 HIS n 1 276 HIS n 1 277 HIS n 1 278 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MotY _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio alginolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 663 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PTTQ18 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code P74944_VIBAL _struct_ref.pdbx_db_accession P74944 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VMGKRYVATPQQSQWEMVVNTPLECQLVHPIPSFGDAVFSSRANKKINLDFELKMRRPMGETRNVSLISMPPPWRPGEHA DRITNLKFFKQFDGYVGGQTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNAFSDCISNLLKYSFEDIA FTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRIQVQ GYGKRRPIADNGSPIGKDKNRRVVISLGRTQV ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZF8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 272 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P74944 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 293 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 272 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ZF8 HIS A 273 ? UNP P74944 ? ? 'EXPRESSION TAG' 273 1 1 2ZF8 HIS A 274 ? UNP P74944 ? ? 'EXPRESSION TAG' 274 2 1 2ZF8 HIS A 275 ? UNP P74944 ? ? 'EXPRESSION TAG' 275 3 1 2ZF8 HIS A 276 ? UNP P74944 ? ? 'EXPRESSION TAG' 276 4 1 2ZF8 HIS A 277 ? UNP P74944 ? ? 'EXPRESSION TAG' 277 5 1 2ZF8 HIS A 278 ? UNP P74944 ? ? 'EXPRESSION TAG' 278 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZF8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # loop_ _exptl_crystal.id _exptl_crystal.density_meas _exptl_crystal.density_Matthews _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 ? 3.25 62.7 ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.temp _exptl_crystal_grow.temp_details _exptl_crystal_grow.pH _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, SITTING DROP' 293 ? 4.50 '1.12M sodium potassium phosphate, 5% PEG1000, 0.1M acetate, pH4.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K' . 2 'VAPOR DIFFUSION, SITTING DROP' 293 ? 8.50 '1.12M sodium potassium phosphate, 5% PEG1000, 0.1M acetate, pH8.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K' . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 35 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2005-10-09 ? 2 CCD 'ADSC QUANTUM 315' 2006-03-15 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'double-crystal monochromator' 'SINGLE WAVELENGTH' x-ray 2 1 M 'double-crystal monochromator' MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.17654 1.0 2 0.97913 1.0 3 0.97940 1.0 4 0.986 1.0 5 0.964 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SPRING-8 BEAMLINE BL41XU' SPring-8 BL41XU ? 1.17654 2 SYNCHROTRON 'SPRING-8 BEAMLINE BL41XU' SPring-8 BL41XU ? '0.97913, 0.97940, 0.986, 0.964' # _reflns.entry_id 2ZF8 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 54.00 _reflns.d_resolution_high 2.850 _reflns.number_obs 10468 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 72.4 _reflns.pdbx_redundancy 3.90 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.85 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.359 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1490 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZF8 _refine.ls_number_reflns_obs 9699 _refine.ls_number_reflns_all 10652 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF 1803280.89 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.00 _refine.ls_d_res_high 2.85 _refine.ls_percent_reflns_obs 92.5 _refine.ls_R_factor_obs 0.29 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.29 _refine.ls_R_factor_R_free 0.312 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 953 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 73.7 _refine.aniso_B[1][1] 15.83 _refine.aniso_B[2][2] 15.83 _refine.aniso_B[3][3] -31.67 _refine.aniso_B[1][2] 21.36 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.3062 _refine.solvent_model_param_bsol 39.0161 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ZF8 _refine_analyze.Luzzati_coordinate_error_obs 0.48 _refine_analyze.Luzzati_sigma_a_obs 0.73 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.53 _refine_analyze.Luzzati_sigma_a_free 0.79 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2000 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 2012 _refine_hist.d_res_high 2.85 _refine_hist.d_res_low 41.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 27.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.48 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.65 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.02 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.64 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.78 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.85 _refine_ls_shell.d_res_low 3.03 _refine_ls_shell.number_reflns_R_work 1323 _refine_ls_shell.R_factor_R_work 0.402 _refine_ls_shell.percent_reflns_obs 85.8 _refine_ls_shell.R_factor_R_free 0.421 _refine_ls_shell.R_factor_R_free_error 0.036 _refine_ls_shell.percent_reflns_R_free 9.4 _refine_ls_shell.number_reflns_R_free 137 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1460 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2ZF8 _struct.title 'Crystal structure of MotY' _struct.pdbx_descriptor 'Component of sodium-driven polar flagellar motor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZF8 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'BETA BARREL, 2-Layer Sandwich, Flagellum, STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 98 ? LYS A 110 ? GLY A 98 LYS A 110 1 ? 13 HELX_P HELX_P2 2 LEU A 136 ? ASN A 150 ? LEU A 136 ASN A 150 1 ? 15 HELX_P HELX_P3 3 THR A 174 ? ARG A 189 ? THR A 174 ARG A 189 1 ? 16 HELX_P HELX_P4 4 SER A 212 ? GLY A 231 ? SER A 212 GLY A 231 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 25 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 147 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 25 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 147 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.027 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? D ? 4 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 2 ? TYR A 6 ? MET A 2 TYR A 6 A 2 ARG A 127 ? VAL A 130 ? ARG A 127 VAL A 130 B 1 GLU A 16 ? ASN A 20 ? GLU A 16 ASN A 20 B 2 GLU A 24 ? PRO A 30 ? GLU A 24 PRO A 30 B 3 GLY A 35 ? ARG A 42 ? GLY A 35 ARG A 42 B 4 ASP A 50 ? MET A 55 ? ASP A 50 MET A 55 B 5 TYR A 95 ? GLY A 97 ? TYR A 95 GLY A 97 C 1 ASN A 85 ? PHE A 92 ? ASN A 85 PHE A 92 C 2 THR A 62 ? ILE A 68 ? THR A 62 ILE A 68 C 3 THR A 115 ? SER A 117 ? THR A 115 SER A 117 D 1 ALA A 160 ? ILE A 163 ? ALA A 160 ILE A 163 D 2 VAL A 263 ? SER A 266 ? VAL A 263 SER A 266 D 3 LEU A 196 ? THR A 201 ? LEU A 196 THR A 201 D 4 ILE A 237 ? GLN A 238 ? ILE A 237 GLN A 238 E 1 ALA A 160 ? ILE A 163 ? ALA A 160 ILE A 163 E 2 VAL A 263 ? SER A 266 ? VAL A 263 SER A 266 E 3 LEU A 196 ? THR A 201 ? LEU A 196 THR A 201 E 4 GLY A 241 ? TYR A 242 ? GLY A 241 TYR A 242 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 4 ? N LYS A 4 O GLU A 129 ? O GLU A 129 B 1 2 N GLU A 16 ? N GLU A 16 O VAL A 28 ? O VAL A 28 B 2 3 N CYS A 25 ? N CYS A 25 O SER A 41 ? O SER A 41 B 3 4 N VAL A 38 ? N VAL A 38 O GLU A 52 ? O GLU A 52 B 4 5 N PHE A 51 ? N PHE A 51 O VAL A 96 ? O VAL A 96 C 1 2 O LEU A 86 ? O LEU A 86 N LEU A 67 ? N LEU A 67 C 2 3 N ILE A 68 ? N ILE A 68 O THR A 115 ? O THR A 115 D 1 2 N PHE A 161 ? N PHE A 161 O ILE A 265 ? O ILE A 265 D 2 3 O VAL A 264 ? O VAL A 264 N VAL A 199 ? N VAL A 199 D 3 4 N LEU A 198 ? N LEU A 198 O GLN A 238 ? O GLN A 238 E 1 2 N PHE A 161 ? N PHE A 161 O ILE A 265 ? O ILE A 265 E 2 3 O VAL A 264 ? O VAL A 264 N VAL A 199 ? N VAL A 199 E 3 4 N ALA A 200 ? N ALA A 200 O TYR A 242 ? O TYR A 242 # _database_PDB_matrix.entry_id 2ZF8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZF8 _atom_sites.fract_transf_matrix[1][1] 0.009608 _atom_sites.fract_transf_matrix[1][2] 0.005547 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011094 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007513 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 TRP 102 102 102 TRP TRP A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 GLN 119 119 119 GLN GLN A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 TRP 121 121 121 TRP TRP A . n A 1 122 GLN 122 122 122 GLN GLN A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 GLN 126 126 126 GLN GLN A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 CYS 147 147 147 CYS CYS A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 LYS 153 153 153 LYS LYS A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 HIS 165 165 165 HIS HIS A . n A 1 166 TYR 166 166 166 TYR TYR A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 GLN 169 169 169 GLN GLN A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 ASP 171 171 171 ASP ASP A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 LYS 178 178 178 LYS LYS A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 GLN 183 183 183 GLN GLN A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 TYR 187 187 187 TYR TYR A . n A 1 188 ILE 188 188 188 ILE ILE A . n A 1 189 ARG 189 189 189 ARG ARG A . n A 1 190 HIS 190 190 190 HIS HIS A . n A 1 191 ASN 191 191 191 ASN ASN A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 ASP 193 193 193 ASP ASP A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 VAL 197 197 197 VAL VAL A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 TYR 202 202 202 TYR TYR A . n A 1 203 THR 203 203 ? ? ? A . n A 1 204 ASP 204 204 ? ? ? A . n A 1 205 SER 205 205 ? ? ? A . n A 1 206 THR 206 206 ? ? ? A . n A 1 207 ASP 207 207 ? ? ? A . n A 1 208 GLY 208 208 ? ? ? A . n A 1 209 LYS 209 209 ? ? ? A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 SER 212 212 212 SER SER A . n A 1 213 GLN 213 213 213 GLN GLN A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 SER 216 216 216 SER SER A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 ARG 219 219 219 ARG ARG A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 SER 222 222 222 SER SER A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 ARG 224 224 224 ARG ARG A . n A 1 225 ASP 225 225 225 ASP ASP A . n A 1 226 TYR 226 226 226 TYR TYR A . n A 1 227 PHE 227 227 227 PHE PHE A . n A 1 228 GLN 228 228 228 GLN GLN A . n A 1 229 SER 229 229 229 SER SER A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 PRO 233 233 233 PRO PRO A . n A 1 234 GLU 234 234 234 GLU GLU A . n A 1 235 ASP 235 235 235 ASP ASP A . n A 1 236 ARG 236 236 236 ARG ARG A . n A 1 237 ILE 237 237 237 ILE ILE A . n A 1 238 GLN 238 238 238 GLN GLN A . n A 1 239 VAL 239 239 239 VAL VAL A . n A 1 240 GLN 240 240 240 GLN GLN A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 TYR 242 242 242 TYR TYR A . n A 1 243 GLY 243 243 243 GLY GLY A . n A 1 244 LYS 244 244 ? ? ? A . n A 1 245 ARG 245 245 ? ? ? A . n A 1 246 ARG 246 246 ? ? ? A . n A 1 247 PRO 247 247 ? ? ? A . n A 1 248 ILE 248 248 ? ? ? A . n A 1 249 ALA 249 249 ? ? ? A . n A 1 250 ASP 250 250 ? ? ? A . n A 1 251 ASN 251 251 ? ? ? A . n A 1 252 GLY 252 252 ? ? ? A . n A 1 253 SER 253 253 ? ? ? A . n A 1 254 PRO 254 254 ? ? ? A . n A 1 255 ILE 255 255 ? ? ? A . n A 1 256 GLY 256 256 ? ? ? A . n A 1 257 LYS 257 257 ? ? ? A . n A 1 258 ASP 258 258 ? ? ? A . n A 1 259 LYS 259 259 ? ? ? A . n A 1 260 ASN 260 260 ? ? ? A . n A 1 261 ARG 261 261 ? ? ? A . n A 1 262 ARG 262 262 262 ARG ARG A . n A 1 263 VAL 263 263 263 VAL VAL A . n A 1 264 VAL 264 264 264 VAL VAL A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 SER 266 266 266 SER SER A . n A 1 267 LEU 267 267 267 LEU LEU A . n A 1 268 GLY 268 268 268 GLY GLY A . n A 1 269 ARG 269 269 269 ARG ARG A . n A 1 270 THR 270 270 270 THR THR A . n A 1 271 GLN 271 271 271 GLN GLN A . n A 1 272 VAL 272 272 ? ? ? A . n A 1 273 HIS 273 273 ? ? ? A . n A 1 274 HIS 274 274 ? ? ? A . n A 1 275 HIS 275 275 ? ? ? A . n A 1 276 HIS 276 276 ? ? ? A . n A 1 277 HIS 277 277 ? ? ? A . n A 1 278 HIS 278 278 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 279 1 HOH HOH A . B 2 HOH 2 280 2 HOH HOH A . B 2 HOH 3 281 3 HOH HOH A . B 2 HOH 4 282 4 HOH HOH A . B 2 HOH 5 283 5 HOH HOH A . B 2 HOH 6 284 6 HOH HOH A . B 2 HOH 7 285 7 HOH HOH A . B 2 HOH 8 286 8 HOH HOH A . B 2 HOH 9 287 9 HOH HOH A . B 2 HOH 10 288 10 HOH HOH A . B 2 HOH 11 289 11 HOH HOH A . B 2 HOH 12 290 12 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-08 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 ADSC 'data collection' Quantum ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OH A TYR 6 ? ? NH2 A ARG 57 ? ? 1.98 2 1 OG A SER 13 ? ? CG2 A VAL 135 ? ? 2.05 3 1 O A ILE 194 ? ? NH1 A ARG 236 ? ? 2.15 4 1 NZ A LYS 45 ? ? OE1 A GLU 157 ? ? 2.15 5 1 CA A ILE 194 ? ? OG1 A THR 270 ? ? 2.16 6 1 O A LEU 164 ? ? OG1 A THR 174 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE1 A GLN 172 ? ? 1_555 OE1 A GLN 172 ? ? 8_556 2.08 2 1 OD2 A ASP 171 ? ? 1_555 OG A SER 222 ? ? 8_556 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A VAL 7 ? ? N A ALA 8 ? ? CA A ALA 8 ? ? 102.71 121.70 -18.99 2.50 Y 2 1 CA A ALA 8 ? ? C A ALA 8 ? ? N A THR 9 ? ? 98.33 117.20 -18.87 2.20 Y 3 1 N A PRO 10 ? ? CA A PRO 10 ? ? C A PRO 10 ? ? 128.39 112.10 16.29 2.60 N 4 1 N A GLN 12 ? ? CA A GLN 12 ? ? C A GLN 12 ? ? 127.92 111.00 16.92 2.70 N 5 1 N A MET 59 ? ? CA A MET 59 ? ? C A MET 59 ? ? 85.47 111.00 -25.53 2.70 N 6 1 N A PRO 71 ? ? CA A PRO 71 ? ? C A PRO 71 ? ? 129.32 112.10 17.22 2.60 N 7 1 C A PRO 71 ? ? N A PRO 72 ? ? CA A PRO 72 ? ? 133.20 119.30 13.90 1.50 Y 8 1 CA A LEU 267 ? ? CB A LEU 267 ? ? CG A LEU 267 ? ? 96.08 115.30 -19.22 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 9 ? ? -19.51 126.75 2 1 GLN A 11 ? ? -72.21 -82.91 3 1 GLN A 12 ? ? -45.40 9.91 4 1 PRO A 32 ? ? -35.76 -32.38 5 1 SER A 33 ? ? -146.09 -9.30 6 1 LEU A 49 ? ? -171.26 112.21 7 1 MET A 70 ? ? 167.02 88.60 8 1 PRO A 71 ? ? -53.32 89.91 9 1 ARG A 75 ? ? -80.52 -158.41 10 1 ASP A 81 ? ? -8.40 -86.97 11 1 ILE A 104 ? ? -31.32 -33.47 12 1 GLU A 107 ? ? -70.37 -71.09 13 1 ASP A 120 ? ? -95.84 -79.33 14 1 GLN A 122 ? ? 48.69 -165.94 15 1 SER A 123 ? ? -111.90 -83.97 16 1 ASP A 125 ? ? -172.45 -173.56 17 1 VAL A 135 ? ? -53.50 -79.32 18 1 PHE A 137 ? ? -8.91 -63.74 19 1 LYS A 153 ? ? -83.59 31.31 20 1 SER A 155 ? ? -115.27 -144.86 21 1 PHE A 156 ? ? -70.31 43.33 22 1 ASP A 158 ? ? -152.67 40.02 23 1 GLU A 167 ? ? 80.91 3.41 24 1 ARG A 168 ? ? 63.33 -28.98 25 1 GLN A 169 ? ? -37.78 -29.50 26 1 TYR A 187 ? ? -89.71 -83.72 27 1 ILE A 188 ? ? -14.75 -58.12 28 1 GLN A 192 ? ? -92.47 32.55 29 1 ALA A 211 ? ? -119.53 -108.63 30 1 SER A 212 ? ? 173.81 157.43 31 1 TYR A 226 ? ? -39.30 -36.51 32 1 GLU A 234 ? ? -32.72 -4.51 33 1 VAL A 239 ? ? -114.41 76.64 34 1 TYR A 242 ? ? 178.88 159.33 35 1 ARG A 269 ? ? -19.87 -75.59 36 1 THR A 270 ? ? 166.84 -81.03 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 203 ? A THR 203 2 1 Y 1 A ASP 204 ? A ASP 204 3 1 Y 1 A SER 205 ? A SER 205 4 1 Y 1 A THR 206 ? A THR 206 5 1 Y 1 A ASP 207 ? A ASP 207 6 1 Y 1 A GLY 208 ? A GLY 208 7 1 Y 1 A LYS 209 ? A LYS 209 8 1 Y 1 A LYS 244 ? A LYS 244 9 1 Y 1 A ARG 245 ? A ARG 245 10 1 Y 1 A ARG 246 ? A ARG 246 11 1 Y 1 A PRO 247 ? A PRO 247 12 1 Y 1 A ILE 248 ? A ILE 248 13 1 Y 1 A ALA 249 ? A ALA 249 14 1 Y 1 A ASP 250 ? A ASP 250 15 1 Y 1 A ASN 251 ? A ASN 251 16 1 Y 1 A GLY 252 ? A GLY 252 17 1 Y 1 A SER 253 ? A SER 253 18 1 Y 1 A PRO 254 ? A PRO 254 19 1 Y 1 A ILE 255 ? A ILE 255 20 1 Y 1 A GLY 256 ? A GLY 256 21 1 Y 1 A LYS 257 ? A LYS 257 22 1 Y 1 A ASP 258 ? A ASP 258 23 1 Y 1 A LYS 259 ? A LYS 259 24 1 Y 1 A ASN 260 ? A ASN 260 25 1 Y 1 A ARG 261 ? A ARG 261 26 1 Y 1 A VAL 272 ? A VAL 272 27 1 Y 1 A HIS 273 ? A HIS 273 28 1 Y 1 A HIS 274 ? A HIS 274 29 1 Y 1 A HIS 275 ? A HIS 275 30 1 Y 1 A HIS 276 ? A HIS 276 31 1 Y 1 A HIS 277 ? A HIS 277 32 1 Y 1 A HIS 278 ? A HIS 278 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #