data_2ZI0 # _entry.id 2ZI0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ZI0 NDB PR0334 RCSB RCSB027996 WWPDB D_1000027996 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZI0 _pdbx_database_status.recvd_initial_deposition_date 2008-02-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yuan, Y.A.' 1 'Chen, H.-Y.' 2 # _citation.id primary _citation.title 'Structural basis for RNA-silencing suppression by Tomato aspermy virus protein 2b' _citation.journal_abbrev 'Embo Rep.' _citation.journal_volume 9 _citation.page_first 754 _citation.page_last 760 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1469-221X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18600235 _citation.pdbx_database_id_DOI 10.1038/embor.2008.118 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, H.-Y.' 1 primary 'Yang, J.' 2 primary 'Lin, C.' 3 primary 'Yuan, Y.A.' 4 # _cell.entry_id 2ZI0 _cell.length_a 86.455 _cell.length_b 122.043 _cell.length_c 28.193 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZI0 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein 2b' 9140.991 2 ? ? 'UNP residues 1-69' ? 2 polymer syn ;RNA (5'-D(P*AP*GP*AP*CP*AP*GP*CP*AP*UP*UP*AP*UP*GP*CP*UP*GP*UP*CP*UP*UP*U)-3') ; 6651.948 2 ? ? ? ? 3 water nat water 18.015 18 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 Tav2b 2 siRNA # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)ASIEIPLHEIIRKLER(MSE)NQKKQAQRKRHKLNRKERGHKSPSEQRRSELWHARQVELSAINSDNSSDEGHHH HHH ; MASIEIPLHEIIRKLERMNQKKQAQRKRHKLNRKERGHKSPSEQRRSELWHARQVELSAINSDNSSDEGHHHHHH A,B ? 2 polyribonucleotide no no AGACAGCAUUAUGCUGUCUUU AGACAGCAUUAUGCUGUCUUU C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ALA n 1 3 SER n 1 4 ILE n 1 5 GLU n 1 6 ILE n 1 7 PRO n 1 8 LEU n 1 9 HIS n 1 10 GLU n 1 11 ILE n 1 12 ILE n 1 13 ARG n 1 14 LYS n 1 15 LEU n 1 16 GLU n 1 17 ARG n 1 18 MSE n 1 19 ASN n 1 20 GLN n 1 21 LYS n 1 22 LYS n 1 23 GLN n 1 24 ALA n 1 25 GLN n 1 26 ARG n 1 27 LYS n 1 28 ARG n 1 29 HIS n 1 30 LYS n 1 31 LEU n 1 32 ASN n 1 33 ARG n 1 34 LYS n 1 35 GLU n 1 36 ARG n 1 37 GLY n 1 38 HIS n 1 39 LYS n 1 40 SER n 1 41 PRO n 1 42 SER n 1 43 GLU n 1 44 GLN n 1 45 ARG n 1 46 ARG n 1 47 SER n 1 48 GLU n 1 49 LEU n 1 50 TRP n 1 51 HIS n 1 52 ALA n 1 53 ARG n 1 54 GLN n 1 55 VAL n 1 56 GLU n 1 57 LEU n 1 58 SER n 1 59 ALA n 1 60 ILE n 1 61 ASN n 1 62 SER n 1 63 ASP n 1 64 ASN n 1 65 SER n 1 66 SER n 1 67 ASP n 1 68 GLU n 1 69 GLY n 1 70 HIS n 1 71 HIS n 1 72 HIS n 1 73 HIS n 1 74 HIS n 1 75 HIS n 2 1 A n 2 2 G n 2 3 A n 2 4 C n 2 5 A n 2 6 G n 2 7 C n 2 8 A n 2 9 U n 2 10 U n 2 11 A n 2 12 U n 2 13 G n 2 14 C n 2 15 U n 2 16 G n 2 17 U n 2 18 C n 2 19 U n 2 20 U n 2 21 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name TAV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RNA4A _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Tomato aspermy virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12315 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP V2B_TAV Q8UYT3 1 MASIEIPLHEIIRKLERMNQKKQAQRKRHKLNRKERGHKSPSEQRRSELWHARQVELSAINSDNSSDEG 1 ? 2 PDB 2ZI0 2ZI0 2 AGACAGCAUUAUGCUGUCUUU 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ZI0 A 1 ? 69 ? Q8UYT3 1 ? 69 ? 1 69 2 1 2ZI0 B 1 ? 69 ? Q8UYT3 1 ? 69 ? 1 69 3 2 2ZI0 C 1 ? 21 ? 2ZI0 1 ? 21 ? 1 21 4 2 2ZI0 D 1 ? 21 ? 2ZI0 1 ? 21 ? 1 21 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ZI0 HIS A 70 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 70 1 1 2ZI0 HIS A 71 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 71 2 1 2ZI0 HIS A 72 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 72 3 1 2ZI0 HIS A 73 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 73 4 1 2ZI0 HIS A 74 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 74 5 1 2ZI0 HIS A 75 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 75 6 2 2ZI0 HIS B 70 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 70 7 2 2ZI0 HIS B 71 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 71 8 2 2ZI0 HIS B 72 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 72 9 2 2ZI0 HIS B 73 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 73 10 2 2ZI0 HIS B 74 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 74 11 2 2ZI0 HIS B 75 ? UNP Q8UYT3 ? ? 'EXPRESSION TAG' 75 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZI0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '25% PEG 1500, 1.0M Ammonium formate, 100mM MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MES ? ? ? 1 2 1 'Ammonium formate' ? ? ? 1 3 1 PEG ? ? ? 1 4 1 HOH ? ? ? 1 5 2 MES ? ? ? 1 6 2 'Ammonium formate' ? ? ? 1 7 2 PEG ? ? ? 1 8 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-07-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9794 1.0 2 0.9790 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9794, 0.9790' # _reflns.entry_id 2ZI0 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 50 _reflns.number_all 7336 _reflns.number_obs 7336 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.107 _reflns.pdbx_netI_over_sigmaI 20.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.488 _reflns_shell.meanI_over_sigI_obs 4.44 _reflns_shell.pdbx_redundancy 7.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ZI0 _refine.ls_number_reflns_obs 7336 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.85 _refine.ls_d_res_high 2.82 _refine.ls_percent_reflns_obs 99.51 _refine.ls_R_factor_obs 0.21648 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2137 _refine.ls_R_factor_R_free 0.27599 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 353 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.924 _refine.correlation_coeff_Fo_to_Fc_free 0.844 _refine.B_iso_mean 20.782 _refine.aniso_B[1][1] 0.84 _refine.aniso_B[2][2] -0.22 _refine.aniso_B[3][3] -0.63 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 3.944 _refine.pdbx_overall_ESU_R_Free 0.394 _refine.overall_SU_ML 0.265 _refine.overall_SU_B 27.231 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 993 _refine_hist.pdbx_number_atoms_nucleic_acid 810 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1821 _refine_hist.d_res_high 2.82 _refine_hist.d_res_low 49.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.021 ? 1911 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.527 2.485 ? 2738 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.981 5.000 ? 113 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.593 22.203 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.110 15.000 ? 228 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.969 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 323 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1136 'X-RAY DIFFRACTION' ? r_nbd_refined 0.196 0.200 ? 718 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.282 0.200 ? 1250 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.193 0.200 ? 47 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.211 0.200 ? 41 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.340 0.200 ? 4 'X-RAY DIFFRACTION' ? r_mcbond_it 0.970 1.500 ? 599 'X-RAY DIFFRACTION' ? r_mcangle_it 1.364 2.000 ? 925 'X-RAY DIFFRACTION' ? r_scbond_it 1.147 3.000 ? 1698 'X-RAY DIFFRACTION' ? r_scangle_it 1.916 4.500 ? 1813 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.818 _refine_ls_shell.d_res_low 2.891 _refine_ls_shell.number_reflns_R_work 473 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 93.30 _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 14 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZI0 _struct.title 'Crystal structure of Tav2b/siRNA complex' _struct.pdbx_descriptor 'Protein 2b/RNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZI0 _struct_keywords.pdbx_keywords 'GENE REGULATION/RNA' _struct_keywords.text 'RNAi suppression, Nucleus, Suppressor of RNA silencing, GENE REGULATION-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 7 ? ARG A 36 ? PRO A 7 ARG A 36 1 ? 30 HELX_P HELX_P2 2 SER A 40 ? SER A 62 ? SER A 40 SER A 62 1 ? 23 HELX_P HELX_P3 3 PRO B 7 ? GLY B 37 ? PRO B 7 GLY B 37 1 ? 31 HELX_P HELX_P4 4 SER B 40 ? SER B 58 ? SER B 40 SER B 58 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 17 C ? ? ? 1_555 A MSE 18 N ? ? A ARG 17 A MSE 18 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 18 C ? ? ? 1_555 A ASN 19 N ? ? A MSE 18 A ASN 19 1_555 ? ? ? ? ? ? ? 1.322 ? covale3 covale ? ? B ARG 17 C ? ? ? 1_555 B MSE 18 N ? ? B ARG 17 B MSE 18 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? B MSE 18 C ? ? ? 1_555 B ASN 19 N ? ? B MSE 18 B ASN 19 1_555 ? ? ? ? ? ? ? 1.326 ? hydrog1 hydrog ? ? C A 1 N1 ? ? ? 1_555 D U 19 N3 ? ? C A 1 D U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C A 1 N6 ? ? ? 1_555 D U 19 O4 ? ? C A 1 D U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 18 N3 ? ? C G 2 D C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 18 O2 ? ? C G 2 D C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 18 N4 ? ? C G 2 D C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C A 3 N1 ? ? ? 1_555 D U 17 N3 ? ? C A 3 D U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C A 3 N6 ? ? ? 1_555 D U 17 O4 ? ? C A 3 D U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 16 N1 ? ? C C 4 D G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 16 O6 ? ? C C 4 D G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 16 N2 ? ? C C 4 D G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 15 N3 ? ? C A 5 D U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 15 O4 ? ? C A 5 D U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 14 N3 ? ? C G 6 D C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C G 6 N2 ? ? ? 1_555 D C 14 O2 ? ? C G 6 D C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C G 6 O6 ? ? ? 1_555 D C 14 N4 ? ? C G 6 D C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 13 N1 ? ? C C 7 D G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 13 O6 ? ? C C 7 D G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 13 N2 ? ? C C 7 D G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C A 8 N1 ? ? ? 1_555 D U 12 N3 ? ? C A 8 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C A 8 N6 ? ? ? 1_555 D U 12 O4 ? ? C A 8 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C U 9 N3 ? ? ? 1_555 D A 11 N1 ? ? C U 9 D A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C U 9 O4 ? ? ? 1_555 D A 11 N6 ? ? C U 9 D A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C A 11 N1 ? ? ? 1_555 D U 9 N3 ? ? C A 11 D U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C A 11 N6 ? ? ? 1_555 D U 9 O4 ? ? C A 11 D U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C U 12 N3 ? ? ? 1_555 D A 8 N1 ? ? C U 12 D A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C U 12 O4 ? ? ? 1_555 D A 8 N6 ? ? C U 12 D A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 13 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C G 13 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 13 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C G 13 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 13 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C C 14 N3 ? ? ? 1_555 D G 6 N1 ? ? C C 14 D G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C C 14 N4 ? ? ? 1_555 D G 6 O6 ? ? C C 14 D G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C C 14 O2 ? ? ? 1_555 D G 6 N2 ? ? C C 14 D G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C U 15 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 15 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C U 15 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 15 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 16 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 4 O2 ? ? C G 16 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 16 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? C U 17 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 17 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? C U 17 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 17 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? C C 18 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 18 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? C C 18 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 18 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? C C 18 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 18 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? C U 19 N3 ? ? ? 1_555 D A 1 N1 ? ? C U 19 D A 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? C U 19 O4 ? ? ? 1_555 D A 1 N6 ? ? C U 19 D A 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 2ZI0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZI0 _atom_sites.fract_transf_matrix[1][1] 0.011567 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008194 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035470 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 ILE 4 4 ? ? ? A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 MSE 18 18 18 MSE MSE A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 TRP 50 50 50 TRP TRP A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 SER 65 65 ? ? ? A . n A 1 66 SER 66 66 ? ? ? A . n A 1 67 ASP 67 67 ? ? ? A . n A 1 68 GLU 68 68 ? ? ? A . n A 1 69 GLY 69 69 ? ? ? A . n A 1 70 HIS 70 70 ? ? ? A . n A 1 71 HIS 71 71 ? ? ? A . n A 1 72 HIS 72 72 ? ? ? A . n A 1 73 HIS 73 73 ? ? ? A . n A 1 74 HIS 74 74 ? ? ? A . n A 1 75 HIS 75 75 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 ALA 2 2 ? ? ? B . n B 1 3 SER 3 3 ? ? ? B . n B 1 4 ILE 4 4 4 ILE ILE B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 PRO 7 7 7 PRO PRO B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 HIS 9 9 9 HIS HIS B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 ARG 13 13 13 ARG ARG B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 MSE 18 18 18 MSE MSE B . n B 1 19 ASN 19 19 19 ASN ASN B . n B 1 20 GLN 20 20 20 GLN GLN B . n B 1 21 LYS 21 21 21 LYS LYS B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 GLN 23 23 23 GLN GLN B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 ARG 26 26 26 ARG ARG B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 HIS 29 29 29 HIS HIS B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 ASN 32 32 32 ASN ASN B . n B 1 33 ARG 33 33 33 ARG ARG B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 HIS 38 38 38 HIS HIS B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 SER 40 40 40 SER SER B . n B 1 41 PRO 41 41 41 PRO PRO B . n B 1 42 SER 42 42 42 SER SER B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 GLN 44 44 44 GLN GLN B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 GLU 48 48 48 GLU GLU B . n B 1 49 LEU 49 49 49 LEU LEU B . n B 1 50 TRP 50 50 50 TRP TRP B . n B 1 51 HIS 51 51 51 HIS HIS B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 ARG 53 53 53 ARG ARG B . n B 1 54 GLN 54 54 54 GLN GLN B . n B 1 55 VAL 55 55 55 VAL VAL B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 SER 58 58 58 SER SER B . n B 1 59 ALA 59 59 ? ? ? B . n B 1 60 ILE 60 60 ? ? ? B . n B 1 61 ASN 61 61 ? ? ? B . n B 1 62 SER 62 62 ? ? ? B . n B 1 63 ASP 63 63 ? ? ? B . n B 1 64 ASN 64 64 ? ? ? B . n B 1 65 SER 65 65 ? ? ? B . n B 1 66 SER 66 66 ? ? ? B . n B 1 67 ASP 67 67 ? ? ? B . n B 1 68 GLU 68 68 ? ? ? B . n B 1 69 GLY 69 69 ? ? ? B . n B 1 70 HIS 70 70 ? ? ? B . n B 1 71 HIS 71 71 ? ? ? B . n B 1 72 HIS 72 72 ? ? ? B . n B 1 73 HIS 73 73 ? ? ? B . n B 1 74 HIS 74 74 ? ? ? B . n B 1 75 HIS 75 75 ? ? ? B . n C 2 1 A 1 1 1 A A C . n C 2 2 G 2 2 2 G G C . n C 2 3 A 3 3 3 A A C . n C 2 4 C 4 4 4 C C C . n C 2 5 A 5 5 5 A A C . n C 2 6 G 6 6 6 G G C . n C 2 7 C 7 7 7 C C C . n C 2 8 A 8 8 8 A A C . n C 2 9 U 9 9 9 U U C . n C 2 10 U 10 10 10 U U C . n C 2 11 A 11 11 11 A A C . n C 2 12 U 12 12 12 U U C . n C 2 13 G 13 13 13 G G C . n C 2 14 C 14 14 14 C C C . n C 2 15 U 15 15 15 U U C . n C 2 16 G 16 16 16 G G C . n C 2 17 U 17 17 17 U U C . n C 2 18 C 18 18 18 C C C . n C 2 19 U 19 19 19 U U C . n C 2 20 U 20 20 20 U U C . n C 2 21 U 21 21 ? ? ? C . n D 2 1 A 1 1 1 A A D . n D 2 2 G 2 2 2 G G D . n D 2 3 A 3 3 3 A A D . n D 2 4 C 4 4 4 C C D . n D 2 5 A 5 5 5 A A D . n D 2 6 G 6 6 6 G G D . n D 2 7 C 7 7 7 C C D . n D 2 8 A 8 8 8 A A D . n D 2 9 U 9 9 9 U U D . n D 2 10 U 10 10 10 U U D . n D 2 11 A 11 11 11 A A D . n D 2 12 U 12 12 12 U U D . n D 2 13 G 13 13 13 G G D . n D 2 14 C 14 14 14 C C D . n D 2 15 U 15 15 15 U U D . n D 2 16 G 16 16 16 G G D . n D 2 17 U 17 17 17 U U D . n D 2 18 C 18 18 18 C C D . n D 2 19 U 19 19 19 U U D . n D 2 20 U 20 20 20 U U D . n D 2 21 U 21 21 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 76 76 HOH HOH A . E 3 HOH 2 77 77 HOH HOH A . F 3 HOH 1 76 76 HOH HOH B . F 3 HOH 2 77 77 HOH HOH B . F 3 HOH 3 78 27 HOH HOH B . G 3 HOH 1 22 22 HOH HOH C . G 3 HOH 2 23 23 HOH HOH C . G 3 HOH 3 24 24 HOH HOH C . G 3 HOH 4 25 25 HOH HOH C . G 3 HOH 5 26 26 HOH HOH C . H 3 HOH 1 23 23 HOH HOH D . H 3 HOH 2 24 24 HOH HOH D . H 3 HOH 3 25 25 HOH HOH D . H 3 HOH 4 26 26 HOH HOH D . H 3 HOH 5 27 27 HOH HOH D . H 3 HOH 6 28 28 HOH HOH D . H 3 HOH 7 29 29 HOH HOH D . H 3 HOH 8 78 78 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 18 A MSE 18 ? MET SELENOMETHIONINE 2 B MSE 18 B MSE 18 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6930 ? 1 MORE -56 ? 1 'SSA (A^2)' 14370 ? 2 'ABSA (A^2)' 18380 ? 2 MORE -149 ? 2 'SSA (A^2)' 24210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -122.0430000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-22 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 3.3926 _pdbx_refine_tls.origin_y -77.5938 _pdbx_refine_tls.origin_z -11.7571 _pdbx_refine_tls.T[1][1] -0.0411 _pdbx_refine_tls.T[2][2] -0.0703 _pdbx_refine_tls.T[3][3] -0.0589 _pdbx_refine_tls.T[1][2] 0.0074 _pdbx_refine_tls.T[1][3] -0.0114 _pdbx_refine_tls.T[2][3] -0.0216 _pdbx_refine_tls.L[1][1] 1.4280 _pdbx_refine_tls.L[2][2] 1.7047 _pdbx_refine_tls.L[3][3] 1.2975 _pdbx_refine_tls.L[1][2] -0.2619 _pdbx_refine_tls.L[1][3] -0.4154 _pdbx_refine_tls.L[2][3] -0.4410 _pdbx_refine_tls.S[1][1] -0.1038 _pdbx_refine_tls.S[1][2] -0.1022 _pdbx_refine_tls.S[1][3] 0.2437 _pdbx_refine_tls.S[2][1] 0.0441 _pdbx_refine_tls.S[2][2] 0.0847 _pdbx_refine_tls.S[2][3] -0.1021 _pdbx_refine_tls.S[3][1] -0.2067 _pdbx_refine_tls.S[3][2] 0.0717 _pdbx_refine_tls.S[3][3] 0.0191 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 7 C 7 A 58 C 58 ? 'X-RAY DIFFRACTION' ? 2 1 B 7 D 7 B 58 D 58 ? 'X-RAY DIFFRACTION' ? 3 1 C 1 A 1 C 19 A 19 ? 'X-RAY DIFFRACTION' ? 4 1 D 1 B 1 D 19 B 19 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHARP phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" C C 7 ? ? P C A 8 ? ? OP2 C A 8 ? ? 117.59 110.50 7.09 1.10 Y 2 1 "O4'" C U 9 ? ? "C1'" C U 9 ? ? N1 C U 9 ? ? 113.19 108.50 4.69 0.70 N 3 1 "O4'" C C 14 ? ? "C1'" C C 14 ? ? N1 C C 14 ? ? 112.95 108.50 4.45 0.70 N 4 1 "O5'" D A 1 ? ? "C5'" D A 1 ? ? "C4'" D A 1 ? ? 104.58 109.40 -4.82 0.80 N 5 1 "O4'" D C 14 ? ? "C1'" D C 14 ? ? N1 D C 14 ? ? 114.84 108.50 6.34 0.70 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 63 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -73.51 _pdbx_validate_torsion.psi 28.43 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C U 20 ? "O5'" ? C U 20 "O5'" 2 1 Y 1 C U 20 ? "C5'" ? C U 20 "C5'" 3 1 Y 1 C U 20 ? "C4'" ? C U 20 "C4'" 4 1 Y 1 C U 20 ? "O4'" ? C U 20 "O4'" 5 1 Y 1 C U 20 ? "C3'" ? C U 20 "C3'" 6 1 Y 1 C U 20 ? "O3'" ? C U 20 "O3'" 7 1 Y 1 C U 20 ? "C2'" ? C U 20 "C2'" 8 1 Y 1 C U 20 ? "O2'" ? C U 20 "O2'" 9 1 Y 1 C U 20 ? "C1'" ? C U 20 "C1'" 10 1 Y 1 C U 20 ? N1 ? C U 20 N1 11 1 Y 1 C U 20 ? C2 ? C U 20 C2 12 1 Y 1 C U 20 ? O2 ? C U 20 O2 13 1 Y 1 C U 20 ? N3 ? C U 20 N3 14 1 Y 1 C U 20 ? C4 ? C U 20 C4 15 1 Y 1 C U 20 ? O4 ? C U 20 O4 16 1 Y 1 C U 20 ? C5 ? C U 20 C5 17 1 Y 1 C U 20 ? C6 ? C U 20 C6 18 1 Y 1 D U 20 ? "O5'" ? D U 20 "O5'" 19 1 Y 1 D U 20 ? "C5'" ? D U 20 "C5'" 20 1 Y 1 D U 20 ? "C4'" ? D U 20 "C4'" 21 1 Y 1 D U 20 ? "O4'" ? D U 20 "O4'" 22 1 Y 1 D U 20 ? "C3'" ? D U 20 "C3'" 23 1 Y 1 D U 20 ? "O3'" ? D U 20 "O3'" 24 1 Y 1 D U 20 ? "C2'" ? D U 20 "C2'" 25 1 Y 1 D U 20 ? "O2'" ? D U 20 "O2'" 26 1 Y 1 D U 20 ? "C1'" ? D U 20 "C1'" 27 1 Y 1 D U 20 ? N1 ? D U 20 N1 28 1 Y 1 D U 20 ? C2 ? D U 20 C2 29 1 Y 1 D U 20 ? O2 ? D U 20 O2 30 1 Y 1 D U 20 ? N3 ? D U 20 N3 31 1 Y 1 D U 20 ? C4 ? D U 20 C4 32 1 Y 1 D U 20 ? O4 ? D U 20 O4 33 1 Y 1 D U 20 ? C5 ? D U 20 C5 34 1 Y 1 D U 20 ? C6 ? D U 20 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A ILE 4 ? A ILE 4 5 1 Y 1 A SER 65 ? A SER 65 6 1 Y 1 A SER 66 ? A SER 66 7 1 Y 1 A ASP 67 ? A ASP 67 8 1 Y 1 A GLU 68 ? A GLU 68 9 1 Y 1 A GLY 69 ? A GLY 69 10 1 Y 1 A HIS 70 ? A HIS 70 11 1 Y 1 A HIS 71 ? A HIS 71 12 1 Y 1 A HIS 72 ? A HIS 72 13 1 Y 1 A HIS 73 ? A HIS 73 14 1 Y 1 A HIS 74 ? A HIS 74 15 1 Y 1 A HIS 75 ? A HIS 75 16 1 Y 1 B MSE 1 ? B MSE 1 17 1 Y 1 B ALA 2 ? B ALA 2 18 1 Y 1 B SER 3 ? B SER 3 19 1 Y 1 B ALA 59 ? B ALA 59 20 1 Y 1 B ILE 60 ? B ILE 60 21 1 Y 1 B ASN 61 ? B ASN 61 22 1 Y 1 B SER 62 ? B SER 62 23 1 Y 1 B ASP 63 ? B ASP 63 24 1 Y 1 B ASN 64 ? B ASN 64 25 1 Y 1 B SER 65 ? B SER 65 26 1 Y 1 B SER 66 ? B SER 66 27 1 Y 1 B ASP 67 ? B ASP 67 28 1 Y 1 B GLU 68 ? B GLU 68 29 1 Y 1 B GLY 69 ? B GLY 69 30 1 Y 1 B HIS 70 ? B HIS 70 31 1 Y 1 B HIS 71 ? B HIS 71 32 1 Y 1 B HIS 72 ? B HIS 72 33 1 Y 1 B HIS 73 ? B HIS 73 34 1 Y 1 B HIS 74 ? B HIS 74 35 1 Y 1 B HIS 75 ? B HIS 75 36 1 Y 1 C U 21 ? C U 21 37 1 Y 1 D U 21 ? D U 21 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2ZI0 'a-form double helix' 2ZI0 'mismatched base pair' # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #