data_2ZI4 # _entry.id 2ZI4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZI4 pdb_00002zi4 10.2210/pdb2zi4/pdb RCSB RCSB028000 ? ? WWPDB D_1000028000 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1P60 'WT dCK in complex with D-dC+ADP' unspecified PDB 2NO1 'C4S dCK variant of dCK in complex with D-dC+ADP' unspecified PDB 2NO7 'C4S dCK variant of dCK in complex with L-dC+ADP' unspecified PDB 2ZI3 'C4S-E247A dCK variant of dCK in complex with D-dA+ADP' unspecified PDB 2ZI5 'C4S dCK variant of dCK in complex with L-dA+UDP' unspecified PDB 2ZI6 'C4S dCK variant of dCK in complex with D-dA+UDP' unspecified PDB 2ZI7 'C4S dCK variant of dCK in complex with D-dG+UDP' unspecified PDB 2ZI9 'C4S-E247A dCK variant of dCK in complex with cladribine+ADP' unspecified PDB 2ZIA 'C4S dCK variant of dCK in complex with cladribine+UDP' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZI4 _pdbx_database_status.recvd_initial_deposition_date 2008-02-13 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sabini, E.' 1 'Lavie, A.' 2 # _citation.id primary _citation.title 'Structural basis for substrate promiscuity of dCK' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 378 _citation.page_first 607 _citation.page_last 621 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18377927 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.02.061 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sabini, E.' 1 ? primary 'Hazra, S.' 2 ? primary 'Ort, S.' 3 ? primary 'Konrad, M.' 4 ? primary 'Lavie, A.' 5 ? # _cell.entry_id 2ZI4 _cell.length_a 79.730 _cell.length_b 79.730 _cell.length_c 93.530 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZI4 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Deoxycytidine kinase' 32572.510 1 2.7.1.74 'C9S, C45S, C59S, C146S' ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn '(2S,3R,5S)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' 251.242 1 ? ? ? ? 4 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 5 water nat water 18.015 86 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name dCK # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSGLVPRGSHMATPPKRSSPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNV QSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL YESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTL KTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSGLVPRGSHMATPPKRSSPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNV QSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL YESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTL KTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 GLY n 1 13 LEU n 1 14 VAL n 1 15 PRO n 1 16 ARG n 1 17 GLY n 1 18 SER n 1 19 HIS n 1 20 MET n 1 21 ALA n 1 22 THR n 1 23 PRO n 1 24 PRO n 1 25 LYS n 1 26 ARG n 1 27 SER n 1 28 SER n 1 29 PRO n 1 30 SER n 1 31 PHE n 1 32 SER n 1 33 ALA n 1 34 SER n 1 35 SER n 1 36 GLU n 1 37 GLY n 1 38 THR n 1 39 ARG n 1 40 ILE n 1 41 LYS n 1 42 LYS n 1 43 ILE n 1 44 SER n 1 45 ILE n 1 46 GLU n 1 47 GLY n 1 48 ASN n 1 49 ILE n 1 50 ALA n 1 51 ALA n 1 52 GLY n 1 53 LYS n 1 54 SER n 1 55 THR n 1 56 PHE n 1 57 VAL n 1 58 ASN n 1 59 ILE n 1 60 LEU n 1 61 LYS n 1 62 GLN n 1 63 LEU n 1 64 SER n 1 65 GLU n 1 66 ASP n 1 67 TRP n 1 68 GLU n 1 69 VAL n 1 70 VAL n 1 71 PRO n 1 72 GLU n 1 73 PRO n 1 74 VAL n 1 75 ALA n 1 76 ARG n 1 77 TRP n 1 78 SER n 1 79 ASN n 1 80 VAL n 1 81 GLN n 1 82 SER n 1 83 THR n 1 84 GLN n 1 85 ASP n 1 86 GLU n 1 87 PHE n 1 88 GLU n 1 89 GLU n 1 90 LEU n 1 91 THR n 1 92 MET n 1 93 SER n 1 94 GLN n 1 95 LYS n 1 96 ASN n 1 97 GLY n 1 98 GLY n 1 99 ASN n 1 100 VAL n 1 101 LEU n 1 102 GLN n 1 103 MET n 1 104 MET n 1 105 TYR n 1 106 GLU n 1 107 LYS n 1 108 PRO n 1 109 GLU n 1 110 ARG n 1 111 TRP n 1 112 SER n 1 113 PHE n 1 114 THR n 1 115 PHE n 1 116 GLN n 1 117 THR n 1 118 TYR n 1 119 ALA n 1 120 CYS n 1 121 LEU n 1 122 SER n 1 123 ARG n 1 124 ILE n 1 125 ARG n 1 126 ALA n 1 127 GLN n 1 128 LEU n 1 129 ALA n 1 130 SER n 1 131 LEU n 1 132 ASN n 1 133 GLY n 1 134 LYS n 1 135 LEU n 1 136 LYS n 1 137 ASP n 1 138 ALA n 1 139 GLU n 1 140 LYS n 1 141 PRO n 1 142 VAL n 1 143 LEU n 1 144 PHE n 1 145 PHE n 1 146 GLU n 1 147 ARG n 1 148 SER n 1 149 VAL n 1 150 TYR n 1 151 SER n 1 152 ASP n 1 153 ARG n 1 154 TYR n 1 155 ILE n 1 156 PHE n 1 157 ALA n 1 158 SER n 1 159 ASN n 1 160 LEU n 1 161 TYR n 1 162 GLU n 1 163 SER n 1 164 GLU n 1 165 SER n 1 166 MET n 1 167 ASN n 1 168 GLU n 1 169 THR n 1 170 GLU n 1 171 TRP n 1 172 THR n 1 173 ILE n 1 174 TYR n 1 175 GLN n 1 176 ASP n 1 177 TRP n 1 178 HIS n 1 179 ASP n 1 180 TRP n 1 181 MET n 1 182 ASN n 1 183 ASN n 1 184 GLN n 1 185 PHE n 1 186 GLY n 1 187 GLN n 1 188 SER n 1 189 LEU n 1 190 GLU n 1 191 LEU n 1 192 ASP n 1 193 GLY n 1 194 ILE n 1 195 ILE n 1 196 TYR n 1 197 LEU n 1 198 GLN n 1 199 ALA n 1 200 THR n 1 201 PRO n 1 202 GLU n 1 203 THR n 1 204 CYS n 1 205 LEU n 1 206 HIS n 1 207 ARG n 1 208 ILE n 1 209 TYR n 1 210 LEU n 1 211 ARG n 1 212 GLY n 1 213 ARG n 1 214 ASN n 1 215 GLU n 1 216 GLU n 1 217 GLN n 1 218 GLY n 1 219 ILE n 1 220 PRO n 1 221 LEU n 1 222 GLU n 1 223 TYR n 1 224 LEU n 1 225 GLU n 1 226 LYS n 1 227 LEU n 1 228 HIS n 1 229 TYR n 1 230 LYS n 1 231 HIS n 1 232 GLU n 1 233 SER n 1 234 TRP n 1 235 LEU n 1 236 LEU n 1 237 HIS n 1 238 ARG n 1 239 THR n 1 240 LEU n 1 241 LYS n 1 242 THR n 1 243 ASN n 1 244 PHE n 1 245 ASP n 1 246 TYR n 1 247 LEU n 1 248 GLN n 1 249 GLU n 1 250 VAL n 1 251 PRO n 1 252 ILE n 1 253 LEU n 1 254 THR n 1 255 LEU n 1 256 ASP n 1 257 VAL n 1 258 ASN n 1 259 GLU n 1 260 ASP n 1 261 PHE n 1 262 LYS n 1 263 ASP n 1 264 LYS n 1 265 TYR n 1 266 GLU n 1 267 SER n 1 268 LEU n 1 269 VAL n 1 270 GLU n 1 271 LYS n 1 272 VAL n 1 273 LYS n 1 274 GLU n 1 275 PHE n 1 276 LEU n 1 277 SER n 1 278 THR n 1 279 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene DCK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET14b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCK_HUMAN _struct_ref.pdbx_db_accession P27707 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN VLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHD WMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE DFKDKYESLVEKVKEFLSTL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZI4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 279 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P27707 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 260 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 260 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ZI4 MET A 1 ? UNP P27707 ? ? 'expression tag' -18 1 1 2ZI4 GLY A 2 ? UNP P27707 ? ? 'expression tag' -17 2 1 2ZI4 SER A 3 ? UNP P27707 ? ? 'expression tag' -16 3 1 2ZI4 SER A 4 ? UNP P27707 ? ? 'expression tag' -15 4 1 2ZI4 HIS A 5 ? UNP P27707 ? ? 'expression tag' -14 5 1 2ZI4 HIS A 6 ? UNP P27707 ? ? 'expression tag' -13 6 1 2ZI4 HIS A 7 ? UNP P27707 ? ? 'expression tag' -12 7 1 2ZI4 HIS A 8 ? UNP P27707 ? ? 'expression tag' -11 8 1 2ZI4 HIS A 9 ? UNP P27707 ? ? 'expression tag' -10 9 1 2ZI4 HIS A 10 ? UNP P27707 ? ? 'expression tag' -9 10 1 2ZI4 SER A 11 ? UNP P27707 ? ? 'expression tag' -8 11 1 2ZI4 GLY A 12 ? UNP P27707 ? ? 'expression tag' -7 12 1 2ZI4 LEU A 13 ? UNP P27707 ? ? 'expression tag' -6 13 1 2ZI4 VAL A 14 ? UNP P27707 ? ? 'expression tag' -5 14 1 2ZI4 PRO A 15 ? UNP P27707 ? ? 'expression tag' -4 15 1 2ZI4 ARG A 16 ? UNP P27707 ? ? 'expression tag' -3 16 1 2ZI4 GLY A 17 ? UNP P27707 ? ? 'expression tag' -2 17 1 2ZI4 SER A 18 ? UNP P27707 ? ? 'expression tag' -1 18 1 2ZI4 HIS A 19 ? UNP P27707 ? ? 'expression tag' 0 19 1 2ZI4 SER A 28 ? UNP P27707 CYS 9 'engineered mutation' 9 20 1 2ZI4 SER A 64 ? UNP P27707 CYS 45 'engineered mutation' 45 21 1 2ZI4 SER A 78 ? UNP P27707 CYS 59 'engineered mutation' 59 22 1 2ZI4 SER A 165 ? UNP P27707 CYS 146 'engineered mutation' 146 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3L1 non-polymer . '(2S,3R,5S)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' "L-2'-deoxyadenosine" 'C10 H13 N5 O3' 251.242 ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZI4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_percent_sol 46.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '1.0M Sodium Citrate, 100mM Hepes, pH7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-10-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2ZI4 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.76 _reflns.d_resolution_low 30 _reflns.number_all 30274 _reflns.number_obs 30274 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.76 _reflns_shell.d_res_low 1.87 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs 0.346 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.0 _reflns_shell.pdbx_redundancy 7.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4686 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZI4 _refine.ls_number_reflns_obs 16276 _refine.ls_number_reflns_all 16276 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.63 _refine.ls_R_factor_obs 0.18693 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17937 _refine.ls_R_factor_R_free 0.2568 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1834 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.915 _refine.B_iso_mean 32.701 _refine.aniso_B[1][1] 1.08 _refine.aniso_B[2][2] 1.08 _refine.aniso_B[3][3] -2.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'Rigid body refinement' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.197 _refine.overall_SU_ML 0.140 _refine.overall_SU_B 11.895 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1880 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 2012 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1975 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.572 1.973 ? 2685 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.593 5.000 ? 226 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.334 24.343 ? 99 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.269 15.000 ? 334 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.334 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 287 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1500 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.204 0.200 ? 875 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.312 0.200 ? 1343 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.185 0.200 ? 115 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.259 0.200 ? 41 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.142 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.282 1.500 ? 1165 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.143 2.000 ? 1832 'X-RAY DIFFRACTION' ? r_scbond_it 3.233 3.000 ? 958 'X-RAY DIFFRACTION' ? r_scangle_it 4.688 4.500 ? 853 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.number_reflns_R_work 1174 _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 134 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZI4 _struct.title 'C4S dCK variant of dCK in complex with L-dA+ADP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZI4 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;dCK, purine, deoxyadenosine, deoxycytidine kinase, nucleoside, enantiomer, L-dA, ATP-binding, Nucleotide-binding, Nucleus, Phosphoprotein, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 52 ? ASN A 58 ? GLY A 33 ASN A 39 1 ? 7 HELX_P HELX_P2 2 ILE A 59 ? SER A 64 ? ILE A 40 SER A 45 5 ? 6 HELX_P HELX_P3 3 PRO A 73 ? SER A 78 ? PRO A 54 SER A 59 1 ? 6 HELX_P HELX_P4 4 ASN A 99 ? LYS A 107 ? ASN A 80 LYS A 88 1 ? 9 HELX_P HELX_P5 5 LYS A 107 ? LEU A 131 ? LYS A 88 LEU A 112 1 ? 25 HELX_P HELX_P6 6 ASN A 132 ? ALA A 138 ? ASN A 113 ALA A 119 5 ? 7 HELX_P HELX_P7 7 SER A 148 ? ILE A 155 ? SER A 129 ILE A 136 1 ? 8 HELX_P HELX_P8 8 ILE A 155 ? SER A 163 ? ILE A 136 SER A 144 1 ? 9 HELX_P HELX_P9 9 ASN A 167 ? PHE A 185 ? ASN A 148 PHE A 166 1 ? 19 HELX_P HELX_P10 10 PHE A 185 ? GLU A 190 ? PHE A 166 GLU A 171 1 ? 6 HELX_P HELX_P11 11 THR A 200 ? GLY A 212 ? THR A 181 GLY A 193 1 ? 13 HELX_P HELX_P12 12 ARG A 213 ? GLN A 217 ? ARG A 194 GLN A 198 5 ? 5 HELX_P HELX_P13 13 PRO A 220 ? LEU A 236 ? PRO A 201 LEU A 217 1 ? 17 HELX_P HELX_P14 14 PHE A 244 ? GLU A 249 ? PHE A 225 GLU A 230 5 ? 6 HELX_P HELX_P15 15 ASP A 260 ? THR A 278 ? ASP A 241 THR A 259 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 54 OG ? ? ? 1_555 B MG . MG ? ? A SER 35 A MG 501 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc2 metalc ? ? A GLU 146 OE1 ? ? ? 1_555 B MG . MG ? ? A GLU 127 A MG 501 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc3 metalc ? ? D ADP . O1B ? ? ? 1_555 B MG . MG ? ? A ADP 301 A MG 501 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 501 A HOH 551 1_555 ? ? ? ? ? ? ? 2.189 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 67 ? VAL A 70 ? TRP A 48 VAL A 51 A 2 VAL A 142 ? GLU A 146 ? VAL A 123 GLU A 127 A 3 LYS A 41 ? GLY A 47 ? LYS A 22 GLY A 28 A 4 GLY A 193 ? GLN A 198 ? GLY A 174 GLN A 179 A 5 ILE A 252 ? ASP A 256 ? ILE A 233 ASP A 237 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 68 ? N GLU A 49 O VAL A 142 ? O VAL A 123 A 2 3 O PHE A 145 ? O PHE A 126 N ILE A 45 ? N ILE A 26 A 3 4 N SER A 44 ? N SER A 25 O ILE A 195 ? O ILE A 176 A 4 5 N TYR A 196 ? N TYR A 177 O LEU A 253 ? O LEU A 234 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 501 ? 4 'BINDING SITE FOR RESIDUE MG A 501' AC2 Software A 3L1 401 ? 14 'BINDING SITE FOR RESIDUE 3L1 A 401' AC3 Software A ADP 301 ? 21 'BINDING SITE FOR RESIDUE ADP A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 SER A 54 ? SER A 35 . ? 1_555 ? 2 AC1 4 GLU A 146 ? GLU A 127 . ? 1_555 ? 3 AC1 4 HOH E . ? HOH A 537 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH A 551 . ? 1_555 ? 5 AC2 14 GLU A 72 ? GLU A 53 . ? 1_555 ? 6 AC2 14 TRP A 77 ? TRP A 58 . ? 1_555 ? 7 AC2 14 LEU A 101 ? LEU A 82 . ? 1_555 ? 8 AC2 14 TYR A 105 ? TYR A 86 . ? 1_555 ? 9 AC2 14 PHE A 115 ? PHE A 96 . ? 1_555 ? 10 AC2 14 GLN A 116 ? GLN A 97 . ? 1_555 ? 11 AC2 14 ARG A 123 ? ARG A 104 . ? 1_555 ? 12 AC2 14 ARG A 147 ? ARG A 128 . ? 1_555 ? 13 AC2 14 ASP A 152 ? ASP A 133 . ? 1_555 ? 14 AC2 14 PHE A 156 ? PHE A 137 . ? 1_555 ? 15 AC2 14 GLU A 216 ? GLU A 197 . ? 1_555 ? 16 AC2 14 HOH E . ? HOH A 504 . ? 1_555 ? 17 AC2 14 HOH E . ? HOH A 519 . ? 1_555 ? 18 AC2 14 HOH E . ? HOH A 551 . ? 1_555 ? 19 AC3 21 ALA A 50 ? ALA A 31 . ? 1_555 ? 20 AC3 21 ALA A 51 ? ALA A 32 . ? 1_555 ? 21 AC3 21 GLY A 52 ? GLY A 33 . ? 1_555 ? 22 AC3 21 LYS A 53 ? LYS A 34 . ? 1_555 ? 23 AC3 21 SER A 54 ? SER A 35 . ? 1_555 ? 24 AC3 21 THR A 55 ? THR A 36 . ? 1_555 ? 25 AC3 21 GLU A 146 ? GLU A 127 . ? 1_555 ? 26 AC3 21 ARG A 207 ? ARG A 188 . ? 1_555 ? 27 AC3 21 ARG A 211 ? ARG A 192 . ? 1_555 ? 28 AC3 21 TYR A 229 ? TYR A 210 . ? 4_555 ? 29 AC3 21 HIS A 237 ? HIS A 218 . ? 4_555 ? 30 AC3 21 GLU A 259 ? GLU A 240 . ? 1_555 ? 31 AC3 21 ASP A 260 ? ASP A 241 . ? 1_555 ? 32 AC3 21 PHE A 261 ? PHE A 242 . ? 1_555 ? 33 AC3 21 HOH E . ? HOH A 503 . ? 1_555 ? 34 AC3 21 HOH E . ? HOH A 504 . ? 1_555 ? 35 AC3 21 HOH E . ? HOH A 534 . ? 1_555 ? 36 AC3 21 HOH E . ? HOH A 540 . ? 4_555 ? 37 AC3 21 HOH E . ? HOH A 551 . ? 1_555 ? 38 AC3 21 HOH E . ? HOH A 564 . ? 1_555 ? 39 AC3 21 HOH E . ? HOH A 572 . ? 4_555 ? # _database_PDB_matrix.entry_id 2ZI4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZI4 _atom_sites.fract_transf_matrix[1][1] 0.012542 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012542 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010692 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 SER 4 -15 ? ? ? A . n A 1 5 HIS 5 -14 ? ? ? A . n A 1 6 HIS 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 SER 11 -8 ? ? ? A . n A 1 12 GLY 12 -7 ? ? ? A . n A 1 13 LEU 13 -6 ? ? ? A . n A 1 14 VAL 14 -5 ? ? ? A . n A 1 15 PRO 15 -4 ? ? ? A . n A 1 16 ARG 16 -3 ? ? ? A . n A 1 17 GLY 17 -2 ? ? ? A . n A 1 18 SER 18 -1 ? ? ? A . n A 1 19 HIS 19 0 ? ? ? A . n A 1 20 MET 20 1 ? ? ? A . n A 1 21 ALA 21 2 ? ? ? A . n A 1 22 THR 22 3 ? ? ? A . n A 1 23 PRO 23 4 ? ? ? A . n A 1 24 PRO 24 5 ? ? ? A . n A 1 25 LYS 25 6 ? ? ? A . n A 1 26 ARG 26 7 ? ? ? A . n A 1 27 SER 27 8 ? ? ? A . n A 1 28 SER 28 9 ? ? ? A . n A 1 29 PRO 29 10 ? ? ? A . n A 1 30 SER 30 11 ? ? ? A . n A 1 31 PHE 31 12 ? ? ? A . n A 1 32 SER 32 13 ? ? ? A . n A 1 33 ALA 33 14 ? ? ? A . n A 1 34 SER 34 15 ? ? ? A . n A 1 35 SER 35 16 ? ? ? A . n A 1 36 GLU 36 17 ? ? ? A . n A 1 37 GLY 37 18 ? ? ? A . n A 1 38 THR 38 19 ? ? ? A . n A 1 39 ARG 39 20 20 ARG ARG A . n A 1 40 ILE 40 21 21 ILE ILE A . n A 1 41 LYS 41 22 22 LYS LYS A . n A 1 42 LYS 42 23 23 LYS LYS A . n A 1 43 ILE 43 24 24 ILE ILE A . n A 1 44 SER 44 25 25 SER SER A . n A 1 45 ILE 45 26 26 ILE ILE A . n A 1 46 GLU 46 27 27 GLU GLU A . n A 1 47 GLY 47 28 28 GLY GLY A . n A 1 48 ASN 48 29 29 ASN ASN A . n A 1 49 ILE 49 30 30 ILE ILE A . n A 1 50 ALA 50 31 31 ALA ALA A . n A 1 51 ALA 51 32 32 ALA ALA A . n A 1 52 GLY 52 33 33 GLY GLY A . n A 1 53 LYS 53 34 34 LYS LYS A . n A 1 54 SER 54 35 35 SER SER A . n A 1 55 THR 55 36 36 THR THR A . n A 1 56 PHE 56 37 37 PHE PHE A . n A 1 57 VAL 57 38 38 VAL VAL A . n A 1 58 ASN 58 39 39 ASN ASN A . n A 1 59 ILE 59 40 40 ILE ILE A . n A 1 60 LEU 60 41 41 LEU LEU A . n A 1 61 LYS 61 42 42 LYS LYS A . n A 1 62 GLN 62 43 43 GLN GLN A . n A 1 63 LEU 63 44 44 LEU LEU A . n A 1 64 SER 64 45 45 SER SER A . n A 1 65 GLU 65 46 46 GLU GLU A . n A 1 66 ASP 66 47 47 ASP ASP A . n A 1 67 TRP 67 48 48 TRP TRP A . n A 1 68 GLU 68 49 49 GLU GLU A . n A 1 69 VAL 69 50 50 VAL VAL A . n A 1 70 VAL 70 51 51 VAL VAL A . n A 1 71 PRO 71 52 52 PRO PRO A . n A 1 72 GLU 72 53 53 GLU GLU A . n A 1 73 PRO 73 54 54 PRO PRO A . n A 1 74 VAL 74 55 55 VAL VAL A . n A 1 75 ALA 75 56 56 ALA ALA A . n A 1 76 ARG 76 57 57 ARG ARG A . n A 1 77 TRP 77 58 58 TRP TRP A . n A 1 78 SER 78 59 59 SER SER A . n A 1 79 ASN 79 60 60 ASN ASN A . n A 1 80 VAL 80 61 61 VAL VAL A . n A 1 81 GLN 81 62 62 GLN GLN A . n A 1 82 SER 82 63 63 SER SER A . n A 1 83 THR 83 64 ? ? ? A . n A 1 84 GLN 84 65 ? ? ? A . n A 1 85 ASP 85 66 ? ? ? A . n A 1 86 GLU 86 67 ? ? ? A . n A 1 87 PHE 87 68 ? ? ? A . n A 1 88 GLU 88 69 ? ? ? A . n A 1 89 GLU 89 70 ? ? ? A . n A 1 90 LEU 90 71 ? ? ? A . n A 1 91 THR 91 72 ? ? ? A . n A 1 92 MET 92 73 ? ? ? A . n A 1 93 SER 93 74 ? ? ? A . n A 1 94 GLN 94 75 ? ? ? A . n A 1 95 LYS 95 76 ? ? ? A . n A 1 96 ASN 96 77 77 ASN ASN A . n A 1 97 GLY 97 78 78 GLY GLY A . n A 1 98 GLY 98 79 79 GLY GLY A . n A 1 99 ASN 99 80 80 ASN ASN A . n A 1 100 VAL 100 81 81 VAL VAL A . n A 1 101 LEU 101 82 82 LEU LEU A . n A 1 102 GLN 102 83 83 GLN GLN A . n A 1 103 MET 103 84 84 MET MET A . n A 1 104 MET 104 85 85 MET MET A . n A 1 105 TYR 105 86 86 TYR TYR A . n A 1 106 GLU 106 87 87 GLU GLU A . n A 1 107 LYS 107 88 88 LYS LYS A . n A 1 108 PRO 108 89 89 PRO PRO A . n A 1 109 GLU 109 90 90 GLU GLU A . n A 1 110 ARG 110 91 91 ARG ARG A . n A 1 111 TRP 111 92 92 TRP TRP A . n A 1 112 SER 112 93 93 SER SER A . n A 1 113 PHE 113 94 94 PHE PHE A . n A 1 114 THR 114 95 95 THR THR A . n A 1 115 PHE 115 96 96 PHE PHE A . n A 1 116 GLN 116 97 97 GLN GLN A . n A 1 117 THR 117 98 98 THR THR A . n A 1 118 TYR 118 99 99 TYR TYR A . n A 1 119 ALA 119 100 100 ALA ALA A . n A 1 120 CYS 120 101 101 CYS CYS A . n A 1 121 LEU 121 102 102 LEU LEU A . n A 1 122 SER 122 103 103 SER SER A . n A 1 123 ARG 123 104 104 ARG ARG A . n A 1 124 ILE 124 105 105 ILE ILE A . n A 1 125 ARG 125 106 106 ARG ARG A . n A 1 126 ALA 126 107 107 ALA ALA A . n A 1 127 GLN 127 108 108 GLN GLN A . n A 1 128 LEU 128 109 109 LEU LEU A . n A 1 129 ALA 129 110 110 ALA ALA A . n A 1 130 SER 130 111 111 SER SER A . n A 1 131 LEU 131 112 112 LEU LEU A . n A 1 132 ASN 132 113 113 ASN ASN A . n A 1 133 GLY 133 114 114 GLY GLY A . n A 1 134 LYS 134 115 115 LYS ALA A . n A 1 135 LEU 135 116 116 LEU LEU A . n A 1 136 LYS 136 117 117 LYS ALA A . n A 1 137 ASP 137 118 118 ASP GLY A . n A 1 138 ALA 138 119 119 ALA ALA A . n A 1 139 GLU 139 120 120 GLU ALA A . n A 1 140 LYS 140 121 121 LYS ALA A . n A 1 141 PRO 141 122 122 PRO PRO A . n A 1 142 VAL 142 123 123 VAL VAL A . n A 1 143 LEU 143 124 124 LEU LEU A . n A 1 144 PHE 144 125 125 PHE PHE A . n A 1 145 PHE 145 126 126 PHE PHE A . n A 1 146 GLU 146 127 127 GLU GLU A . n A 1 147 ARG 147 128 128 ARG ARG A . n A 1 148 SER 148 129 129 SER SER A . n A 1 149 VAL 149 130 130 VAL VAL A . n A 1 150 TYR 150 131 131 TYR TYR A . n A 1 151 SER 151 132 132 SER SER A . n A 1 152 ASP 152 133 133 ASP ASP A . n A 1 153 ARG 153 134 134 ARG ARG A . n A 1 154 TYR 154 135 135 TYR TYR A . n A 1 155 ILE 155 136 136 ILE ILE A . n A 1 156 PHE 156 137 137 PHE PHE A . n A 1 157 ALA 157 138 138 ALA ALA A . n A 1 158 SER 158 139 139 SER SER A . n A 1 159 ASN 159 140 140 ASN ASN A . n A 1 160 LEU 160 141 141 LEU LEU A . n A 1 161 TYR 161 142 142 TYR TYR A . n A 1 162 GLU 162 143 143 GLU GLU A . n A 1 163 SER 163 144 144 SER SER A . n A 1 164 GLU 164 145 145 GLU GLU A . n A 1 165 SER 165 146 146 SER SER A . n A 1 166 MET 166 147 147 MET MET A . n A 1 167 ASN 167 148 148 ASN ASN A . n A 1 168 GLU 168 149 149 GLU GLU A . n A 1 169 THR 169 150 150 THR THR A . n A 1 170 GLU 170 151 151 GLU GLU A . n A 1 171 TRP 171 152 152 TRP TRP A . n A 1 172 THR 172 153 153 THR THR A . n A 1 173 ILE 173 154 154 ILE ILE A . n A 1 174 TYR 174 155 155 TYR TYR A . n A 1 175 GLN 175 156 156 GLN GLN A . n A 1 176 ASP 176 157 157 ASP ASP A . n A 1 177 TRP 177 158 158 TRP TRP A . n A 1 178 HIS 178 159 159 HIS HIS A . n A 1 179 ASP 179 160 160 ASP ASP A . n A 1 180 TRP 180 161 161 TRP TRP A . n A 1 181 MET 181 162 162 MET MET A . n A 1 182 ASN 182 163 163 ASN ASN A . n A 1 183 ASN 183 164 164 ASN ALA A . n A 1 184 GLN 184 165 165 GLN GLN A . n A 1 185 PHE 185 166 166 PHE PHE A . n A 1 186 GLY 186 167 167 GLY GLY A . n A 1 187 GLN 187 168 168 GLN ALA A . n A 1 188 SER 188 169 169 SER SER A . n A 1 189 LEU 189 170 170 LEU LEU A . n A 1 190 GLU 190 171 171 GLU GLU A . n A 1 191 LEU 191 172 172 LEU LEU A . n A 1 192 ASP 192 173 173 ASP ASP A . n A 1 193 GLY 193 174 174 GLY GLY A . n A 1 194 ILE 194 175 175 ILE ILE A . n A 1 195 ILE 195 176 176 ILE ILE A . n A 1 196 TYR 196 177 177 TYR TYR A . n A 1 197 LEU 197 178 178 LEU LEU A . n A 1 198 GLN 198 179 179 GLN GLN A . n A 1 199 ALA 199 180 180 ALA ALA A . n A 1 200 THR 200 181 181 THR THR A . n A 1 201 PRO 201 182 182 PRO PRO A . n A 1 202 GLU 202 183 183 GLU GLU A . n A 1 203 THR 203 184 184 THR THR A . n A 1 204 CYS 204 185 185 CYS CYS A . n A 1 205 LEU 205 186 186 LEU LEU A . n A 1 206 HIS 206 187 187 HIS HIS A . n A 1 207 ARG 207 188 188 ARG ARG A . n A 1 208 ILE 208 189 189 ILE ILE A . n A 1 209 TYR 209 190 190 TYR TYR A . n A 1 210 LEU 210 191 191 LEU LEU A . n A 1 211 ARG 211 192 192 ARG ARG A . n A 1 212 GLY 212 193 193 GLY GLY A . n A 1 213 ARG 213 194 194 ARG ARG A . n A 1 214 ASN 214 195 195 ASN ASN A . n A 1 215 GLU 215 196 196 GLU GLU A . n A 1 216 GLU 216 197 197 GLU GLU A . n A 1 217 GLN 217 198 198 GLN GLN A . n A 1 218 GLY 218 199 199 GLY GLY A . n A 1 219 ILE 219 200 200 ILE ILE A . n A 1 220 PRO 220 201 201 PRO PRO A . n A 1 221 LEU 221 202 202 LEU LEU A . n A 1 222 GLU 222 203 203 GLU GLU A . n A 1 223 TYR 223 204 204 TYR TYR A . n A 1 224 LEU 224 205 205 LEU LEU A . n A 1 225 GLU 225 206 206 GLU GLU A . n A 1 226 LYS 226 207 207 LYS LYS A . n A 1 227 LEU 227 208 208 LEU LEU A . n A 1 228 HIS 228 209 209 HIS HIS A . n A 1 229 TYR 229 210 210 TYR TYR A . n A 1 230 LYS 230 211 211 LYS LYS A . n A 1 231 HIS 231 212 212 HIS HIS A . n A 1 232 GLU 232 213 213 GLU GLU A . n A 1 233 SER 233 214 214 SER SER A . n A 1 234 TRP 234 215 215 TRP TRP A . n A 1 235 LEU 235 216 216 LEU LEU A . n A 1 236 LEU 236 217 217 LEU LEU A . n A 1 237 HIS 237 218 218 HIS HIS A . n A 1 238 ARG 238 219 219 ARG ARG A . n A 1 239 THR 239 220 220 THR THR A . n A 1 240 LEU 240 221 221 LEU LEU A . n A 1 241 LYS 241 222 222 LYS LYS A . n A 1 242 THR 242 223 223 THR THR A . n A 1 243 ASN 243 224 224 ASN ASN A . n A 1 244 PHE 244 225 225 PHE PHE A . n A 1 245 ASP 245 226 226 ASP ASP A . n A 1 246 TYR 246 227 227 TYR TYR A . n A 1 247 LEU 247 228 228 LEU LEU A . n A 1 248 GLN 248 229 229 GLN GLN A . n A 1 249 GLU 249 230 230 GLU GLU A . n A 1 250 VAL 250 231 231 VAL VAL A . n A 1 251 PRO 251 232 232 PRO PRO A . n A 1 252 ILE 252 233 233 ILE ILE A . n A 1 253 LEU 253 234 234 LEU LEU A . n A 1 254 THR 254 235 235 THR THR A . n A 1 255 LEU 255 236 236 LEU LEU A . n A 1 256 ASP 256 237 237 ASP ASP A . n A 1 257 VAL 257 238 238 VAL VAL A . n A 1 258 ASN 258 239 239 ASN ASN A . n A 1 259 GLU 259 240 240 GLU GLU A . n A 1 260 ASP 260 241 241 ASP ASP A . n A 1 261 PHE 261 242 242 PHE PHE A . n A 1 262 LYS 262 243 243 LYS LYS A . n A 1 263 ASP 263 244 244 ASP ASP A . n A 1 264 LYS 264 245 245 LYS LYS A . n A 1 265 TYR 265 246 246 TYR TYR A . n A 1 266 GLU 266 247 247 GLU GLU A . n A 1 267 SER 267 248 248 SER SER A . n A 1 268 LEU 268 249 249 LEU LEU A . n A 1 269 VAL 269 250 250 VAL VAL A . n A 1 270 GLU 270 251 251 GLU GLU A . n A 1 271 LYS 271 252 252 LYS LYS A . n A 1 272 VAL 272 253 253 VAL VAL A . n A 1 273 LYS 273 254 254 LYS LYS A . n A 1 274 GLU 274 255 255 GLU GLU A . n A 1 275 PHE 275 256 256 PHE PHE A . n A 1 276 LEU 276 257 257 LEU LEU A . n A 1 277 SER 277 258 258 SER SER A . n A 1 278 THR 278 259 259 THR THR A . n A 1 279 LEU 279 260 260 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 501 501 MG MG A . C 3 3L1 1 401 401 3L1 LAD A . D 4 ADP 1 301 301 ADP ADP A . E 5 HOH 1 502 1 HOH HOH A . E 5 HOH 2 503 2 HOH HOH A . E 5 HOH 3 504 3 HOH HOH A . E 5 HOH 4 505 4 HOH HOH A . E 5 HOH 5 506 5 HOH HOH A . E 5 HOH 6 507 6 HOH HOH A . E 5 HOH 7 508 7 HOH HOH A . E 5 HOH 8 509 8 HOH HOH A . E 5 HOH 9 510 9 HOH HOH A . E 5 HOH 10 511 10 HOH HOH A . E 5 HOH 11 512 11 HOH HOH A . E 5 HOH 12 513 12 HOH HOH A . E 5 HOH 13 514 13 HOH HOH A . E 5 HOH 14 515 14 HOH HOH A . E 5 HOH 15 516 15 HOH HOH A . E 5 HOH 16 517 16 HOH HOH A . E 5 HOH 17 518 17 HOH HOH A . E 5 HOH 18 519 18 HOH HOH A . E 5 HOH 19 520 19 HOH HOH A . E 5 HOH 20 521 20 HOH HOH A . E 5 HOH 21 522 21 HOH HOH A . E 5 HOH 22 523 22 HOH HOH A . E 5 HOH 23 524 23 HOH HOH A . E 5 HOH 24 525 24 HOH HOH A . E 5 HOH 25 526 26 HOH HOH A . E 5 HOH 26 527 27 HOH HOH A . E 5 HOH 27 528 29 HOH HOH A . E 5 HOH 28 529 30 HOH HOH A . E 5 HOH 29 530 31 HOH HOH A . E 5 HOH 30 531 32 HOH HOH A . E 5 HOH 31 532 33 HOH HOH A . E 5 HOH 32 533 34 HOH HOH A . E 5 HOH 33 534 35 HOH HOH A . E 5 HOH 34 535 37 HOH HOH A . E 5 HOH 35 536 38 HOH HOH A . E 5 HOH 36 537 40 HOH HOH A . E 5 HOH 37 538 41 HOH HOH A . E 5 HOH 38 539 42 HOH HOH A . E 5 HOH 39 540 43 HOH HOH A . E 5 HOH 40 541 44 HOH HOH A . E 5 HOH 41 542 45 HOH HOH A . E 5 HOH 42 543 46 HOH HOH A . E 5 HOH 43 544 47 HOH HOH A . E 5 HOH 44 545 48 HOH HOH A . E 5 HOH 45 546 49 HOH HOH A . E 5 HOH 46 547 50 HOH HOH A . E 5 HOH 47 548 51 HOH HOH A . E 5 HOH 48 549 52 HOH HOH A . E 5 HOH 49 550 53 HOH HOH A . E 5 HOH 50 551 54 HOH HOH A . E 5 HOH 51 552 55 HOH HOH A . E 5 HOH 52 553 56 HOH HOH A . E 5 HOH 53 554 57 HOH HOH A . E 5 HOH 54 555 58 HOH HOH A . E 5 HOH 55 556 59 HOH HOH A . E 5 HOH 56 557 60 HOH HOH A . E 5 HOH 57 558 62 HOH HOH A . E 5 HOH 58 559 63 HOH HOH A . E 5 HOH 59 560 64 HOH HOH A . E 5 HOH 60 561 66 HOH HOH A . E 5 HOH 61 562 67 HOH HOH A . E 5 HOH 62 563 68 HOH HOH A . E 5 HOH 63 564 69 HOH HOH A . E 5 HOH 64 565 70 HOH HOH A . E 5 HOH 65 566 71 HOH HOH A . E 5 HOH 66 567 72 HOH HOH A . E 5 HOH 67 568 73 HOH HOH A . E 5 HOH 68 569 75 HOH HOH A . E 5 HOH 69 570 76 HOH HOH A . E 5 HOH 70 571 77 HOH HOH A . E 5 HOH 71 572 78 HOH HOH A . E 5 HOH 72 573 79 HOH HOH A . E 5 HOH 73 574 80 HOH HOH A . E 5 HOH 74 575 81 HOH HOH A . E 5 HOH 75 576 82 HOH HOH A . E 5 HOH 76 577 83 HOH HOH A . E 5 HOH 77 578 84 HOH HOH A . E 5 HOH 78 579 85 HOH HOH A . E 5 HOH 79 580 86 HOH HOH A . E 5 HOH 80 581 87 HOH HOH A . E 5 HOH 81 582 88 HOH HOH A . E 5 HOH 82 583 89 HOH HOH A . E 5 HOH 83 584 90 HOH HOH A . E 5 HOH 84 585 91 HOH HOH A . E 5 HOH 85 586 92 HOH HOH A . E 5 HOH 86 587 93 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4290 ? 1 MORE -32.6 ? 1 'SSA (A^2)' 20250 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 46.7650000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 54 ? A SER 35 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 OE1 ? A GLU 146 ? A GLU 127 ? 1_555 91.5 ? 2 OG ? A SER 54 ? A SER 35 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O1B ? D ADP . ? A ADP 301 ? 1_555 88.0 ? 3 OE1 ? A GLU 146 ? A GLU 127 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O1B ? D ADP . ? A ADP 301 ? 1_555 100.3 ? 4 OG ? A SER 54 ? A SER 35 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? E HOH . ? A HOH 551 ? 1_555 129.1 ? 5 OE1 ? A GLU 146 ? A GLU 127 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? E HOH . ? A HOH 551 ? 1_555 138.3 ? 6 O1B ? D ADP . ? A ADP 301 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? E HOH . ? A HOH 551 ? 1_555 91.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-11 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 5 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 4 'Structure model' '_struct_ref_seq_dif.details' 14 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SERGUI 'data collection' . ? 2 XDS 'data reduction' . ? 3 XDS 'data scaling' . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 142 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 149 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.96 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 45 ? ? -176.56 137.89 2 1 ASN A 60 ? ? -159.34 89.28 3 1 ARG A 128 ? ? 60.90 -176.12 4 1 ILE A 136 ? ? -100.53 -67.34 5 1 PHE A 166 ? ? -108.73 50.36 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 115 ? CG ? A LYS 134 CG 2 1 Y 1 A LYS 115 ? CD ? A LYS 134 CD 3 1 Y 1 A LYS 115 ? CE ? A LYS 134 CE 4 1 Y 1 A LYS 115 ? NZ ? A LYS 134 NZ 5 1 Y 1 A LYS 117 ? CG ? A LYS 136 CG 6 1 Y 1 A LYS 117 ? CD ? A LYS 136 CD 7 1 Y 1 A LYS 117 ? CE ? A LYS 136 CE 8 1 Y 1 A LYS 117 ? NZ ? A LYS 136 NZ 9 1 Y 1 A ASP 118 ? CB ? A ASP 137 CB 10 1 Y 1 A ASP 118 ? CG ? A ASP 137 CG 11 1 Y 1 A ASP 118 ? OD1 ? A ASP 137 OD1 12 1 Y 1 A ASP 118 ? OD2 ? A ASP 137 OD2 13 1 Y 1 A GLU 120 ? CG ? A GLU 139 CG 14 1 Y 1 A GLU 120 ? CD ? A GLU 139 CD 15 1 Y 1 A GLU 120 ? OE1 ? A GLU 139 OE1 16 1 Y 1 A GLU 120 ? OE2 ? A GLU 139 OE2 17 1 Y 1 A LYS 121 ? CG ? A LYS 140 CG 18 1 Y 1 A LYS 121 ? CD ? A LYS 140 CD 19 1 Y 1 A LYS 121 ? CE ? A LYS 140 CE 20 1 Y 1 A LYS 121 ? NZ ? A LYS 140 NZ 21 1 Y 1 A ASN 164 ? CG ? A ASN 183 CG 22 1 Y 1 A ASN 164 ? OD1 ? A ASN 183 OD1 23 1 Y 1 A ASN 164 ? ND2 ? A ASN 183 ND2 24 1 Y 1 A GLN 168 ? CG ? A GLN 187 CG 25 1 Y 1 A GLN 168 ? CD ? A GLN 187 CD 26 1 Y 1 A GLN 168 ? OE1 ? A GLN 187 OE1 27 1 Y 1 A GLN 168 ? NE2 ? A GLN 187 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -18 ? A MET 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A SER -15 ? A SER 4 5 1 Y 1 A HIS -14 ? A HIS 5 6 1 Y 1 A HIS -13 ? A HIS 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A SER -8 ? A SER 11 12 1 Y 1 A GLY -7 ? A GLY 12 13 1 Y 1 A LEU -6 ? A LEU 13 14 1 Y 1 A VAL -5 ? A VAL 14 15 1 Y 1 A PRO -4 ? A PRO 15 16 1 Y 1 A ARG -3 ? A ARG 16 17 1 Y 1 A GLY -2 ? A GLY 17 18 1 Y 1 A SER -1 ? A SER 18 19 1 Y 1 A HIS 0 ? A HIS 19 20 1 Y 1 A MET 1 ? A MET 20 21 1 Y 1 A ALA 2 ? A ALA 21 22 1 Y 1 A THR 3 ? A THR 22 23 1 Y 1 A PRO 4 ? A PRO 23 24 1 Y 1 A PRO 5 ? A PRO 24 25 1 Y 1 A LYS 6 ? A LYS 25 26 1 Y 1 A ARG 7 ? A ARG 26 27 1 Y 1 A SER 8 ? A SER 27 28 1 Y 1 A SER 9 ? A SER 28 29 1 Y 1 A PRO 10 ? A PRO 29 30 1 Y 1 A SER 11 ? A SER 30 31 1 Y 1 A PHE 12 ? A PHE 31 32 1 Y 1 A SER 13 ? A SER 32 33 1 Y 1 A ALA 14 ? A ALA 33 34 1 Y 1 A SER 15 ? A SER 34 35 1 Y 1 A SER 16 ? A SER 35 36 1 Y 1 A GLU 17 ? A GLU 36 37 1 Y 1 A GLY 18 ? A GLY 37 38 1 Y 1 A THR 19 ? A THR 38 39 1 Y 1 A THR 64 ? A THR 83 40 1 Y 1 A GLN 65 ? A GLN 84 41 1 Y 1 A ASP 66 ? A ASP 85 42 1 Y 1 A GLU 67 ? A GLU 86 43 1 Y 1 A PHE 68 ? A PHE 87 44 1 Y 1 A GLU 69 ? A GLU 88 45 1 Y 1 A GLU 70 ? A GLU 89 46 1 Y 1 A LEU 71 ? A LEU 90 47 1 Y 1 A THR 72 ? A THR 91 48 1 Y 1 A MET 73 ? A MET 92 49 1 Y 1 A SER 74 ? A SER 93 50 1 Y 1 A GLN 75 ? A GLN 94 51 1 Y 1 A LYS 76 ? A LYS 95 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 '(2S,3R,5S)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' 3L1 4 "ADENOSINE-5'-DIPHOSPHATE" ADP 5 water HOH #