data_2ZIO # _entry.id 2ZIO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZIO pdb_00002zio 10.2210/pdb2zio/pdb RCSB RCSB028020 ? ? WWPDB D_1000028020 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2E3C 'ligand-free form' unspecified PDB 2ZCD 'AMPPNP-bound form' unspecified PDB 2ZCE 'Pyrrolysine/AMPPNP-bound form' unspecified PDB 2ZIN 'Boc-Lys/AMPPNP-bound form' unspecified TargetDB trt00100322.6 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZIO _pdbx_database_status.recvd_initial_deposition_date 2008-02-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yanagisawa, T.' 1 'Ishii, R.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title ;Multistep Engineering of Pyrrolysyl-tRNA Synthetase to Genetically Encode N(varepsilon)-(o-Azidobenzyloxycarbonyl) lysine for Site-Specific Protein Modification ; _citation.journal_abbrev Chem.Biol. _citation.journal_volume 15 _citation.page_first 1187 _citation.page_last 1197 _citation.year 2008 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19022179 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2008.10.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yanagisawa, T.' 1 ? primary 'Ishii, R.' 2 ? primary 'Fukunaga, R.' 3 ? primary 'Kobayashi, T.' 4 ? primary 'Sakamoto, K.' 5 ? primary 'Yokoyama, S.' 6 ? # _cell.entry_id 2ZIO _cell.length_a 104.150 _cell.length_b 104.150 _cell.length_c 71.060 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZIO _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pyrrolysyl-tRNA synthetase' 33344.164 1 6.1.1.26 ? 'C-terminal fragment' ? 2 non-polymer syn 'IMIDODIPHOSPHORIC ACID' 176.990 1 ? ? ? ? 3 non-polymer syn "5'-O-[(S)-({(2S)-2-amino-6-[(propoxycarbonyl)amino]hexanoyl}oxy)(hydroxy)phosphoryl]adenosine" 561.483 1 ? ? ? ? 4 water nat water 18.015 152 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pyrrolysine--tRNA ligase, PylRS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYL GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIF EIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVG PIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSGSYYNGISTNL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYL GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIF EIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVG PIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSGSYYNGISTNL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier trt00100322.6 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 SER n 1 24 ALA n 1 25 PRO n 1 26 ALA n 1 27 LEU n 1 28 THR n 1 29 LYS n 1 30 SER n 1 31 GLN n 1 32 THR n 1 33 ASP n 1 34 ARG n 1 35 LEU n 1 36 GLU n 1 37 VAL n 1 38 LEU n 1 39 LEU n 1 40 ASN n 1 41 PRO n 1 42 LYS n 1 43 ASP n 1 44 GLU n 1 45 ILE n 1 46 SER n 1 47 LEU n 1 48 ASN n 1 49 SER n 1 50 GLY n 1 51 LYS n 1 52 PRO n 1 53 PHE n 1 54 ARG n 1 55 GLU n 1 56 LEU n 1 57 GLU n 1 58 SER n 1 59 GLU n 1 60 LEU n 1 61 LEU n 1 62 SER n 1 63 ARG n 1 64 ARG n 1 65 LYS n 1 66 LYS n 1 67 ASP n 1 68 LEU n 1 69 GLN n 1 70 GLN n 1 71 ILE n 1 72 TYR n 1 73 ALA n 1 74 GLU n 1 75 GLU n 1 76 ARG n 1 77 GLU n 1 78 ASN n 1 79 TYR n 1 80 LEU n 1 81 GLY n 1 82 LYS n 1 83 LEU n 1 84 GLU n 1 85 ARG n 1 86 GLU n 1 87 ILE n 1 88 THR n 1 89 ARG n 1 90 PHE n 1 91 PHE n 1 92 VAL n 1 93 ASP n 1 94 ARG n 1 95 GLY n 1 96 PHE n 1 97 LEU n 1 98 GLU n 1 99 ILE n 1 100 LYS n 1 101 SER n 1 102 PRO n 1 103 ILE n 1 104 LEU n 1 105 ILE n 1 106 PRO n 1 107 LEU n 1 108 GLU n 1 109 TYR n 1 110 ILE n 1 111 GLU n 1 112 ARG n 1 113 MET n 1 114 GLY n 1 115 ILE n 1 116 ASP n 1 117 ASN n 1 118 ASP n 1 119 THR n 1 120 GLU n 1 121 LEU n 1 122 SER n 1 123 LYS n 1 124 GLN n 1 125 ILE n 1 126 PHE n 1 127 ARG n 1 128 VAL n 1 129 ASP n 1 130 LYS n 1 131 ASN n 1 132 PHE n 1 133 CYS n 1 134 LEU n 1 135 ARG n 1 136 PRO n 1 137 MET n 1 138 LEU n 1 139 ALA n 1 140 PRO n 1 141 ASN n 1 142 LEU n 1 143 TYR n 1 144 ASN n 1 145 TYR n 1 146 LEU n 1 147 ARG n 1 148 LYS n 1 149 LEU n 1 150 ASP n 1 151 ARG n 1 152 ALA n 1 153 LEU n 1 154 PRO n 1 155 ASP n 1 156 PRO n 1 157 ILE n 1 158 LYS n 1 159 ILE n 1 160 PHE n 1 161 GLU n 1 162 ILE n 1 163 GLY n 1 164 PRO n 1 165 CYS n 1 166 TYR n 1 167 ARG n 1 168 LYS n 1 169 GLU n 1 170 SER n 1 171 ASP n 1 172 GLY n 1 173 LYS n 1 174 GLU n 1 175 HIS n 1 176 LEU n 1 177 GLU n 1 178 GLU n 1 179 PHE n 1 180 THR n 1 181 MET n 1 182 LEU n 1 183 ASN n 1 184 PHE n 1 185 CYS n 1 186 GLN n 1 187 MET n 1 188 GLY n 1 189 SER n 1 190 GLY n 1 191 CYS n 1 192 THR n 1 193 ARG n 1 194 GLU n 1 195 ASN n 1 196 LEU n 1 197 GLU n 1 198 SER n 1 199 ILE n 1 200 ILE n 1 201 THR n 1 202 ASP n 1 203 PHE n 1 204 LEU n 1 205 ASN n 1 206 HIS n 1 207 LEU n 1 208 GLY n 1 209 ILE n 1 210 ASP n 1 211 PHE n 1 212 LYS n 1 213 ILE n 1 214 VAL n 1 215 GLY n 1 216 ASP n 1 217 SER n 1 218 CYS n 1 219 MET n 1 220 VAL n 1 221 TYR n 1 222 GLY n 1 223 ASP n 1 224 THR n 1 225 LEU n 1 226 ASP n 1 227 VAL n 1 228 MET n 1 229 HIS n 1 230 GLY n 1 231 ASP n 1 232 LEU n 1 233 GLU n 1 234 LEU n 1 235 SER n 1 236 SER n 1 237 ALA n 1 238 VAL n 1 239 VAL n 1 240 GLY n 1 241 PRO n 1 242 ILE n 1 243 PRO n 1 244 LEU n 1 245 ASP n 1 246 ARG n 1 247 GLU n 1 248 TRP n 1 249 GLY n 1 250 ILE n 1 251 ASP n 1 252 LYS n 1 253 PRO n 1 254 TRP n 1 255 ILE n 1 256 GLY n 1 257 ALA n 1 258 GLY n 1 259 PHE n 1 260 GLY n 1 261 LEU n 1 262 GLU n 1 263 ARG n 1 264 LEU n 1 265 LEU n 1 266 LYS n 1 267 VAL n 1 268 LYS n 1 269 HIS n 1 270 ASP n 1 271 PHE n 1 272 LYS n 1 273 ASN n 1 274 ILE n 1 275 LYS n 1 276 ARG n 1 277 ALA n 1 278 ALA n 1 279 ARG n 1 280 SER n 1 281 GLY n 1 282 SER n 1 283 TYR n 1 284 TYR n 1 285 ASN n 1 286 GLY n 1 287 ILE n 1 288 SER n 1 289 THR n 1 290 ASN n 1 291 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene pylS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain JCM9314 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanosarcina mazei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2209 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) codon plus' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28c _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PYLS_METMA _struct_ref.pdbx_db_accession Q8PWY1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKS PILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTM LNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGL ERLLKVKHDFKNIKRAARSESYYNGISTNL ; _struct_ref.pdbx_align_begin 185 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZIO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 291 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8PWY1 _struct_ref_seq.db_align_beg 185 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 454 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 185 _struct_ref_seq.pdbx_auth_seq_align_end 454 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ZIO MET A 1 ? UNP Q8PWY1 ? ? 'expression tag' -21 1 1 2ZIO GLY A 2 ? UNP Q8PWY1 ? ? 'expression tag' -20 2 1 2ZIO SER A 3 ? UNP Q8PWY1 ? ? 'expression tag' -19 3 1 2ZIO SER A 4 ? UNP Q8PWY1 ? ? 'expression tag' -18 4 1 2ZIO HIS A 5 ? UNP Q8PWY1 ? ? 'expression tag' -17 5 1 2ZIO HIS A 6 ? UNP Q8PWY1 ? ? 'expression tag' -16 6 1 2ZIO HIS A 7 ? UNP Q8PWY1 ? ? 'expression tag' -15 7 1 2ZIO HIS A 8 ? UNP Q8PWY1 ? ? 'expression tag' -14 8 1 2ZIO HIS A 9 ? UNP Q8PWY1 ? ? 'expression tag' -13 9 1 2ZIO HIS A 10 ? UNP Q8PWY1 ? ? 'expression tag' -12 10 1 2ZIO SER A 11 ? UNP Q8PWY1 ? ? 'expression tag' -11 11 1 2ZIO SER A 12 ? UNP Q8PWY1 ? ? 'expression tag' -10 12 1 2ZIO GLY A 13 ? UNP Q8PWY1 ? ? 'expression tag' -9 13 1 2ZIO LEU A 14 ? UNP Q8PWY1 ? ? 'expression tag' -8 14 1 2ZIO VAL A 15 ? UNP Q8PWY1 ? ? 'expression tag' -7 15 1 2ZIO PRO A 16 ? UNP Q8PWY1 ? ? 'expression tag' -6 16 1 2ZIO ARG A 17 ? UNP Q8PWY1 ? ? 'expression tag' -5 17 1 2ZIO GLY A 18 ? UNP Q8PWY1 ? ? 'expression tag' -4 18 1 2ZIO SER A 19 ? UNP Q8PWY1 ? ? 'expression tag' -3 19 1 2ZIO HIS A 20 ? UNP Q8PWY1 ? ? 'expression tag' -2 20 1 2ZIO MET A 21 ? UNP Q8PWY1 ? ? 'expression tag' -1 21 1 2ZIO GLY A 281 ? UNP Q8PWY1 GLU 444 'SEE REMARK 999' 444 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PN non-polymer . 'IMIDODIPHOSPHORIC ACID' ? 'H5 N O6 P2' 176.990 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 AYB non-polymer . "5'-O-[(S)-({(2S)-2-amino-6-[(propoxycarbonyl)amino]hexanoyl}oxy)(hydroxy)phosphoryl]adenosine" ;NE-ALLYLOXYCARBONYL-L-LYSINE-5'-ADENOSINE MONOPHOSPHATE ; 'C20 H32 N7 O10 P' 561.483 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZIO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.34 _exptl_crystal.density_percent_sol 63.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'Na/Cacodylate, MgCl2, PEG3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-07-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2ZIO _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.06 _reflns.number_obs 26977 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 29.3 _reflns.pdbx_redundancy 8.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.06 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_all 82.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.339 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZIO _refine.ls_number_reflns_obs 26965 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1664781.09 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.00 _refine.ls_d_res_high 2.06 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.183 _refine.ls_R_factor_R_free 0.213 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2681 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 52.2 _refine.aniso_B[1][1] -3.84 _refine.aniso_B[2][2] -3.84 _refine.aniso_B[3][3] 7.67 _refine.aniso_B[1][2] 0.47 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.357135 _refine.solvent_model_param_bsol 61.3507 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1WK3 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ZIO _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.26 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2074 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 2273 _refine_hist.d_res_high 2.06 _refine_hist.d_res_low 42.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.08 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.70 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 6.37 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 7.31 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 9.52 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.06 _refine_ls_shell.d_res_low 2.19 _refine_ls_shell.number_reflns_R_work 3816 _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.percent_reflns_obs 94.3 _refine_ls_shell.R_factor_R_free 0.308 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 10.2 _refine_ls_shell.number_reflns_R_free 433 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 ligand5.param ligand5.top 'X-RAY DIFFRACTION' # _struct.entry_id 2ZIO _struct.title 'Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with AlocLys-AMP and PNP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZIO _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;aminoacyl-tRNA synthetase, pyrrolysyl-tRNA synthetase, tRNA, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding, Cytoplasm, Ligase, Nucleotide-binding, Protein biosynthesis, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? LEU A 39 ? THR A 191 LEU A 202 1 ? 12 HELX_P HELX_P2 2 PRO A 52 ? GLU A 74 ? PRO A 215 GLU A 237 1 ? 23 HELX_P HELX_P3 3 ASN A 78 ? ARG A 94 ? ASN A 241 ARG A 257 1 ? 17 HELX_P HELX_P4 4 LEU A 107 ? ARG A 112 ? LEU A 270 ARG A 275 1 ? 6 HELX_P HELX_P5 5 LEU A 138 ? ASP A 150 ? LEU A 301 ASP A 313 1 ? 13 HELX_P HELX_P6 6 THR A 192 ? GLY A 208 ? THR A 355 GLY A 371 1 ? 17 HELX_P HELX_P7 7 ILE A 242 ? GLY A 249 ? ILE A 405 GLY A 412 5 ? 8 HELX_P HELX_P8 8 LEU A 261 ? ASP A 270 ? LEU A 424 ASP A 433 1 ? 10 HELX_P HELX_P9 9 ASN A 273 ? ALA A 277 ? ASN A 436 ALA A 440 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 155 A . ? ASP 318 A PRO 156 A ? PRO 319 A 1 -0.04 2 GLY 240 A . ? GLY 403 A PRO 241 A ? PRO 404 A 1 -0.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 97 ? ILE A 99 ? LEU A 260 ILE A 262 A 2 ILE A 157 ? TYR A 166 ? ILE A 320 TYR A 329 A 3 GLU A 178 ? MET A 187 ? GLU A 341 MET A 350 A 4 TRP A 254 ? GLY A 260 ? TRP A 417 GLY A 423 A 5 LEU A 232 ? VAL A 239 ? LEU A 395 VAL A 402 A 6 THR A 224 ? HIS A 229 ? THR A 387 HIS A 392 A 7 LYS A 212 ? VAL A 214 ? LYS A 375 VAL A 377 B 1 LEU A 104 ? PRO A 106 ? LEU A 267 PRO A 269 B 2 PHE A 132 ? LEU A 134 ? PHE A 295 LEU A 297 B 3 ARG A 127 ? VAL A 128 ? ARG A 290 VAL A 291 C 1 TYR A 283 ? TYR A 284 ? TYR A 446 TYR A 447 C 2 ILE A 287 ? SER A 288 ? ILE A 450 SER A 451 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 99 ? N ILE A 262 O PHE A 160 ? O PHE A 323 A 2 3 N ILE A 159 ? N ILE A 322 O CYS A 185 ? O CYS A 348 A 3 4 N LEU A 182 ? N LEU A 345 O PHE A 259 ? O PHE A 422 A 4 5 O GLY A 256 ? O GLY A 419 N VAL A 238 ? N VAL A 401 A 5 6 O SER A 235 ? O SER A 398 N VAL A 227 ? N VAL A 390 A 6 7 O MET A 228 ? O MET A 391 N LYS A 212 ? N LYS A 375 B 1 2 N ILE A 105 ? N ILE A 268 O CYS A 133 ? O CYS A 296 B 2 3 O PHE A 132 ? O PHE A 295 N VAL A 128 ? N VAL A 291 C 1 2 N TYR A 284 ? N TYR A 447 O ILE A 287 ? O ILE A 450 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2PN 1 ? 5 'BINDING SITE FOR RESIDUE 2PN A 1' AC2 Software A AYB 601 ? 25 'BINDING SITE FOR RESIDUE AYB A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 175 ? HIS A 338 . ? 1_555 ? 2 AC1 5 LEU A 232 ? LEU A 395 . ? 1_555 ? 3 AC1 5 GLU A 233 ? GLU A 396 . ? 1_555 ? 4 AC1 5 ARG A 263 ? ARG A 426 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 753 . ? 1_555 ? 6 AC2 25 ALA A 139 ? ALA A 302 . ? 1_555 ? 7 AC2 25 LEU A 146 ? LEU A 309 . ? 1_555 ? 8 AC2 25 ARG A 167 ? ARG A 330 . ? 1_555 ? 9 AC2 25 GLU A 169 ? GLU A 332 . ? 1_555 ? 10 AC2 25 GLU A 174 ? GLU A 337 . ? 1_555 ? 11 AC2 25 LEU A 176 ? LEU A 339 . ? 1_555 ? 12 AC2 25 PHE A 179 ? PHE A 342 . ? 1_555 ? 13 AC2 25 MET A 181 ? MET A 344 . ? 1_555 ? 14 AC2 25 ASN A 183 ? ASN A 346 . ? 1_555 ? 15 AC2 25 GLU A 233 ? GLU A 396 . ? 1_555 ? 16 AC2 25 LEU A 234 ? LEU A 397 . ? 1_555 ? 17 AC2 25 SER A 235 ? SER A 398 . ? 1_555 ? 18 AC2 25 SER A 236 ? SER A 399 . ? 1_555 ? 19 AC2 25 TRP A 254 ? TRP A 417 . ? 1_555 ? 20 AC2 25 ALA A 257 ? ALA A 420 . ? 1_555 ? 21 AC2 25 GLY A 258 ? GLY A 421 . ? 1_555 ? 22 AC2 25 GLY A 260 ? GLY A 423 . ? 1_555 ? 23 AC2 25 ARG A 263 ? ARG A 426 . ? 1_555 ? 24 AC2 25 HOH D . ? HOH A 604 . ? 1_555 ? 25 AC2 25 HOH D . ? HOH A 608 . ? 1_555 ? 26 AC2 25 HOH D . ? HOH A 637 . ? 1_555 ? 27 AC2 25 HOH D . ? HOH A 640 . ? 1_555 ? 28 AC2 25 HOH D . ? HOH A 684 . ? 1_555 ? 29 AC2 25 HOH D . ? HOH A 705 . ? 1_555 ? 30 AC2 25 HOH D . ? HOH A 753 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ZIO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZIO _atom_sites.fract_transf_matrix[1][1] 0.009602 _atom_sites.fract_transf_matrix[1][2] 0.005543 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011087 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014073 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 SER 3 -19 ? ? ? A . n A 1 4 SER 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 SER 11 -11 ? ? ? A . n A 1 12 SER 12 -10 ? ? ? A . n A 1 13 GLY 13 -9 ? ? ? A . n A 1 14 LEU 14 -8 ? ? ? A . n A 1 15 VAL 15 -7 ? ? ? A . n A 1 16 PRO 16 -6 ? ? ? A . n A 1 17 ARG 17 -5 ? ? ? A . n A 1 18 GLY 18 -4 ? ? ? A . n A 1 19 SER 19 -3 ? ? ? A . n A 1 20 HIS 20 -2 ? ? ? A . n A 1 21 MET 21 -1 ? ? ? A . n A 1 22 ALA 22 185 ? ? ? A . n A 1 23 SER 23 186 ? ? ? A . n A 1 24 ALA 24 187 ? ? ? A . n A 1 25 PRO 25 188 188 PRO PRO A . n A 1 26 ALA 26 189 189 ALA ALA A . n A 1 27 LEU 27 190 190 LEU LEU A . n A 1 28 THR 28 191 191 THR THR A . n A 1 29 LYS 29 192 192 LYS LYS A . n A 1 30 SER 30 193 193 SER SER A . n A 1 31 GLN 31 194 194 GLN GLN A . n A 1 32 THR 32 195 195 THR THR A . n A 1 33 ASP 33 196 196 ASP ASP A . n A 1 34 ARG 34 197 197 ARG ARG A . n A 1 35 LEU 35 198 198 LEU LEU A . n A 1 36 GLU 36 199 199 GLU GLU A . n A 1 37 VAL 37 200 200 VAL VAL A . n A 1 38 LEU 38 201 201 LEU LEU A . n A 1 39 LEU 39 202 202 LEU LEU A . n A 1 40 ASN 40 203 203 ASN ASN A . n A 1 41 PRO 41 204 204 PRO PRO A . n A 1 42 LYS 42 205 205 LYS LYS A . n A 1 43 ASP 43 206 206 ASP ASP A . n A 1 44 GLU 44 207 207 GLU GLU A . n A 1 45 ILE 45 208 ? ? ? A . n A 1 46 SER 46 209 ? ? ? A . n A 1 47 LEU 47 210 ? ? ? A . n A 1 48 ASN 48 211 ? ? ? A . n A 1 49 SER 49 212 212 SER SER A . n A 1 50 GLY 50 213 213 GLY GLY A . n A 1 51 LYS 51 214 214 LYS LYS A . n A 1 52 PRO 52 215 215 PRO PRO A . n A 1 53 PHE 53 216 216 PHE PHE A . n A 1 54 ARG 54 217 217 ARG ARG A . n A 1 55 GLU 55 218 218 GLU GLU A . n A 1 56 LEU 56 219 219 LEU LEU A . n A 1 57 GLU 57 220 220 GLU GLU A . n A 1 58 SER 58 221 221 SER SER A . n A 1 59 GLU 59 222 222 GLU GLU A . n A 1 60 LEU 60 223 223 LEU LEU A . n A 1 61 LEU 61 224 224 LEU LEU A . n A 1 62 SER 62 225 225 SER SER A . n A 1 63 ARG 63 226 226 ARG ARG A . n A 1 64 ARG 64 227 227 ARG ARG A . n A 1 65 LYS 65 228 228 LYS LYS A . n A 1 66 LYS 66 229 229 LYS LYS A . n A 1 67 ASP 67 230 230 ASP ASP A . n A 1 68 LEU 68 231 231 LEU LEU A . n A 1 69 GLN 69 232 232 GLN GLN A . n A 1 70 GLN 70 233 233 GLN GLN A . n A 1 71 ILE 71 234 234 ILE ILE A . n A 1 72 TYR 72 235 235 TYR TYR A . n A 1 73 ALA 73 236 236 ALA ALA A . n A 1 74 GLU 74 237 237 GLU GLU A . n A 1 75 GLU 75 238 238 GLU GLU A . n A 1 76 ARG 76 239 239 ARG ARG A . n A 1 77 GLU 77 240 240 GLU GLU A . n A 1 78 ASN 78 241 241 ASN ASN A . n A 1 79 TYR 79 242 242 TYR TYR A . n A 1 80 LEU 80 243 243 LEU LEU A . n A 1 81 GLY 81 244 244 GLY GLY A . n A 1 82 LYS 82 245 245 LYS LYS A . n A 1 83 LEU 83 246 246 LEU LEU A . n A 1 84 GLU 84 247 247 GLU GLU A . n A 1 85 ARG 85 248 248 ARG ARG A . n A 1 86 GLU 86 249 249 GLU GLU A . n A 1 87 ILE 87 250 250 ILE ILE A . n A 1 88 THR 88 251 251 THR THR A . n A 1 89 ARG 89 252 252 ARG ARG A . n A 1 90 PHE 90 253 253 PHE PHE A . n A 1 91 PHE 91 254 254 PHE PHE A . n A 1 92 VAL 92 255 255 VAL VAL A . n A 1 93 ASP 93 256 256 ASP ASP A . n A 1 94 ARG 94 257 257 ARG ARG A . n A 1 95 GLY 95 258 258 GLY GLY A . n A 1 96 PHE 96 259 259 PHE PHE A . n A 1 97 LEU 97 260 260 LEU LEU A . n A 1 98 GLU 98 261 261 GLU GLU A . n A 1 99 ILE 99 262 262 ILE ILE A . n A 1 100 LYS 100 263 263 LYS LYS A . n A 1 101 SER 101 264 264 SER SER A . n A 1 102 PRO 102 265 265 PRO PRO A . n A 1 103 ILE 103 266 266 ILE ILE A . n A 1 104 LEU 104 267 267 LEU LEU A . n A 1 105 ILE 105 268 268 ILE ILE A . n A 1 106 PRO 106 269 269 PRO PRO A . n A 1 107 LEU 107 270 270 LEU LEU A . n A 1 108 GLU 108 271 271 GLU GLU A . n A 1 109 TYR 109 272 272 TYR TYR A . n A 1 110 ILE 110 273 273 ILE ILE A . n A 1 111 GLU 111 274 274 GLU GLU A . n A 1 112 ARG 112 275 275 ARG ARG A . n A 1 113 MET 113 276 276 MET MET A . n A 1 114 GLY 114 277 277 GLY GLY A . n A 1 115 ILE 115 278 278 ILE ILE A . n A 1 116 ASP 116 279 279 ASP ASP A . n A 1 117 ASN 117 280 280 ASN ASN A . n A 1 118 ASP 118 281 ? ? ? A . n A 1 119 THR 119 282 ? ? ? A . n A 1 120 GLU 120 283 ? ? ? A . n A 1 121 LEU 121 284 284 LEU LEU A . n A 1 122 SER 122 285 285 SER SER A . n A 1 123 LYS 123 286 286 LYS LYS A . n A 1 124 GLN 124 287 287 GLN GLN A . n A 1 125 ILE 125 288 288 ILE ILE A . n A 1 126 PHE 126 289 289 PHE PHE A . n A 1 127 ARG 127 290 290 ARG ARG A . n A 1 128 VAL 128 291 291 VAL VAL A . n A 1 129 ASP 129 292 292 ASP ASP A . n A 1 130 LYS 130 293 293 LYS LYS A . n A 1 131 ASN 131 294 294 ASN ASN A . n A 1 132 PHE 132 295 295 PHE PHE A . n A 1 133 CYS 133 296 296 CYS CYS A . n A 1 134 LEU 134 297 297 LEU LEU A . n A 1 135 ARG 135 298 298 ARG ARG A . n A 1 136 PRO 136 299 299 PRO PRO A . n A 1 137 MET 137 300 300 MET MET A . n A 1 138 LEU 138 301 301 LEU LEU A . n A 1 139 ALA 139 302 302 ALA ALA A . n A 1 140 PRO 140 303 303 PRO PRO A . n A 1 141 ASN 141 304 304 ASN ASN A . n A 1 142 LEU 142 305 305 LEU LEU A . n A 1 143 TYR 143 306 306 TYR TYR A . n A 1 144 ASN 144 307 307 ASN ASN A . n A 1 145 TYR 145 308 308 TYR TYR A . n A 1 146 LEU 146 309 309 LEU LEU A . n A 1 147 ARG 147 310 310 ARG ARG A . n A 1 148 LYS 148 311 311 LYS LYS A . n A 1 149 LEU 149 312 312 LEU LEU A . n A 1 150 ASP 150 313 313 ASP ASP A . n A 1 151 ARG 151 314 314 ARG ARG A . n A 1 152 ALA 152 315 315 ALA ALA A . n A 1 153 LEU 153 316 316 LEU LEU A . n A 1 154 PRO 154 317 317 PRO PRO A . n A 1 155 ASP 155 318 318 ASP ASP A . n A 1 156 PRO 156 319 319 PRO PRO A . n A 1 157 ILE 157 320 320 ILE ILE A . n A 1 158 LYS 158 321 321 LYS LYS A . n A 1 159 ILE 159 322 322 ILE ILE A . n A 1 160 PHE 160 323 323 PHE PHE A . n A 1 161 GLU 161 324 324 GLU GLU A . n A 1 162 ILE 162 325 325 ILE ILE A . n A 1 163 GLY 163 326 326 GLY GLY A . n A 1 164 PRO 164 327 327 PRO PRO A . n A 1 165 CYS 165 328 328 CYS CYS A . n A 1 166 TYR 166 329 329 TYR TYR A . n A 1 167 ARG 167 330 330 ARG ARG A . n A 1 168 LYS 168 331 331 LYS LYS A . n A 1 169 GLU 169 332 332 GLU GLU A . n A 1 170 SER 170 333 333 SER SER A . n A 1 171 ASP 171 334 334 ASP ASP A . n A 1 172 GLY 172 335 335 GLY GLY A . n A 1 173 LYS 173 336 ? ? ? A . n A 1 174 GLU 174 337 337 GLU GLU A . n A 1 175 HIS 175 338 338 HIS HIS A . n A 1 176 LEU 176 339 339 LEU LEU A . n A 1 177 GLU 177 340 340 GLU GLU A . n A 1 178 GLU 178 341 341 GLU GLU A . n A 1 179 PHE 179 342 342 PHE PHE A . n A 1 180 THR 180 343 343 THR THR A . n A 1 181 MET 181 344 344 MET MET A . n A 1 182 LEU 182 345 345 LEU LEU A . n A 1 183 ASN 183 346 346 ASN ASN A . n A 1 184 PHE 184 347 347 PHE PHE A . n A 1 185 CYS 185 348 348 CYS CYS A . n A 1 186 GLN 186 349 349 GLN GLN A . n A 1 187 MET 187 350 350 MET MET A . n A 1 188 GLY 188 351 351 GLY GLY A . n A 1 189 SER 189 352 352 SER SER A . n A 1 190 GLY 190 353 353 GLY GLY A . n A 1 191 CYS 191 354 354 CYS CYS A . n A 1 192 THR 192 355 355 THR THR A . n A 1 193 ARG 193 356 356 ARG ARG A . n A 1 194 GLU 194 357 357 GLU GLU A . n A 1 195 ASN 195 358 358 ASN ASN A . n A 1 196 LEU 196 359 359 LEU LEU A . n A 1 197 GLU 197 360 360 GLU GLU A . n A 1 198 SER 198 361 361 SER SER A . n A 1 199 ILE 199 362 362 ILE ILE A . n A 1 200 ILE 200 363 363 ILE ILE A . n A 1 201 THR 201 364 364 THR THR A . n A 1 202 ASP 202 365 365 ASP ASP A . n A 1 203 PHE 203 366 366 PHE PHE A . n A 1 204 LEU 204 367 367 LEU LEU A . n A 1 205 ASN 205 368 368 ASN ASN A . n A 1 206 HIS 206 369 369 HIS HIS A . n A 1 207 LEU 207 370 370 LEU LEU A . n A 1 208 GLY 208 371 371 GLY GLY A . n A 1 209 ILE 209 372 372 ILE ILE A . n A 1 210 ASP 210 373 373 ASP ASP A . n A 1 211 PHE 211 374 374 PHE PHE A . n A 1 212 LYS 212 375 375 LYS LYS A . n A 1 213 ILE 213 376 376 ILE ILE A . n A 1 214 VAL 214 377 377 VAL VAL A . n A 1 215 GLY 215 378 378 GLY GLY A . n A 1 216 ASP 216 379 379 ASP ASP A . n A 1 217 SER 217 380 ? ? ? A . n A 1 218 CYS 218 381 ? ? ? A . n A 1 219 MET 219 382 ? ? ? A . n A 1 220 VAL 220 383 ? ? ? A . n A 1 221 TYR 221 384 384 TYR TYR A . n A 1 222 GLY 222 385 385 GLY GLY A . n A 1 223 ASP 223 386 386 ASP ASP A . n A 1 224 THR 224 387 387 THR THR A . n A 1 225 LEU 225 388 388 LEU LEU A . n A 1 226 ASP 226 389 389 ASP ASP A . n A 1 227 VAL 227 390 390 VAL VAL A . n A 1 228 MET 228 391 391 MET MET A . n A 1 229 HIS 229 392 392 HIS HIS A . n A 1 230 GLY 230 393 393 GLY GLY A . n A 1 231 ASP 231 394 394 ASP ASP A . n A 1 232 LEU 232 395 395 LEU LEU A . n A 1 233 GLU 233 396 396 GLU GLU A . n A 1 234 LEU 234 397 397 LEU LEU A . n A 1 235 SER 235 398 398 SER SER A . n A 1 236 SER 236 399 399 SER SER A . n A 1 237 ALA 237 400 400 ALA ALA A . n A 1 238 VAL 238 401 401 VAL VAL A . n A 1 239 VAL 239 402 402 VAL VAL A . n A 1 240 GLY 240 403 403 GLY GLY A . n A 1 241 PRO 241 404 404 PRO PRO A . n A 1 242 ILE 242 405 405 ILE ILE A . n A 1 243 PRO 243 406 406 PRO PRO A . n A 1 244 LEU 244 407 407 LEU LEU A . n A 1 245 ASP 245 408 408 ASP ASP A . n A 1 246 ARG 246 409 409 ARG ARG A . n A 1 247 GLU 247 410 410 GLU GLU A . n A 1 248 TRP 248 411 411 TRP TRP A . n A 1 249 GLY 249 412 412 GLY GLY A . n A 1 250 ILE 250 413 413 ILE ILE A . n A 1 251 ASP 251 414 414 ASP ASP A . n A 1 252 LYS 252 415 415 LYS LYS A . n A 1 253 PRO 253 416 416 PRO PRO A . n A 1 254 TRP 254 417 417 TRP TRP A . n A 1 255 ILE 255 418 418 ILE ILE A . n A 1 256 GLY 256 419 419 GLY GLY A . n A 1 257 ALA 257 420 420 ALA ALA A . n A 1 258 GLY 258 421 421 GLY GLY A . n A 1 259 PHE 259 422 422 PHE PHE A . n A 1 260 GLY 260 423 423 GLY GLY A . n A 1 261 LEU 261 424 424 LEU LEU A . n A 1 262 GLU 262 425 425 GLU GLU A . n A 1 263 ARG 263 426 426 ARG ARG A . n A 1 264 LEU 264 427 427 LEU LEU A . n A 1 265 LEU 265 428 428 LEU LEU A . n A 1 266 LYS 266 429 429 LYS LYS A . n A 1 267 VAL 267 430 430 VAL VAL A . n A 1 268 LYS 268 431 431 LYS LYS A . n A 1 269 HIS 269 432 432 HIS HIS A . n A 1 270 ASP 270 433 433 ASP ASP A . n A 1 271 PHE 271 434 434 PHE PHE A . n A 1 272 LYS 272 435 435 LYS LYS A . n A 1 273 ASN 273 436 436 ASN ASN A . n A 1 274 ILE 274 437 437 ILE ILE A . n A 1 275 LYS 275 438 438 LYS LYS A . n A 1 276 ARG 276 439 439 ARG ARG A . n A 1 277 ALA 277 440 440 ALA ALA A . n A 1 278 ALA 278 441 441 ALA ALA A . n A 1 279 ARG 279 442 442 ARG ARG A . n A 1 280 SER 280 443 443 SER SER A . n A 1 281 GLY 281 444 444 GLY GLY A . n A 1 282 SER 282 445 445 SER SER A . n A 1 283 TYR 283 446 446 TYR TYR A . n A 1 284 TYR 284 447 447 TYR TYR A . n A 1 285 ASN 285 448 448 ASN ASN A . n A 1 286 GLY 286 449 449 GLY GLY A . n A 1 287 ILE 287 450 450 ILE ILE A . n A 1 288 SER 288 451 451 SER SER A . n A 1 289 THR 289 452 452 THR THR A . n A 1 290 ASN 290 453 453 ASN ASN A . n A 1 291 LEU 291 454 454 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2PN 1 1 1 2PN 2PN A . C 3 AYB 1 601 601 AYB AYB A . D 4 HOH 1 604 604 HOH HOH A . D 4 HOH 2 605 605 HOH HOH A . D 4 HOH 3 606 606 HOH HOH A . D 4 HOH 4 607 607 HOH HOH A . D 4 HOH 5 608 608 HOH HOH A . D 4 HOH 6 609 609 HOH HOH A . D 4 HOH 7 610 610 HOH HOH A . D 4 HOH 8 611 611 HOH HOH A . D 4 HOH 9 612 612 HOH HOH A . D 4 HOH 10 613 613 HOH HOH A . D 4 HOH 11 614 614 HOH HOH A . D 4 HOH 12 615 615 HOH HOH A . D 4 HOH 13 616 616 HOH HOH A . D 4 HOH 14 617 617 HOH HOH A . D 4 HOH 15 618 618 HOH HOH A . D 4 HOH 16 619 619 HOH HOH A . D 4 HOH 17 620 620 HOH HOH A . D 4 HOH 18 621 621 HOH HOH A . D 4 HOH 19 622 622 HOH HOH A . D 4 HOH 20 623 623 HOH HOH A . D 4 HOH 21 624 624 HOH HOH A . D 4 HOH 22 625 625 HOH HOH A . D 4 HOH 23 626 626 HOH HOH A . D 4 HOH 24 627 627 HOH HOH A . D 4 HOH 25 628 628 HOH HOH A . D 4 HOH 26 629 629 HOH HOH A . D 4 HOH 27 630 630 HOH HOH A . D 4 HOH 28 631 631 HOH HOH A . D 4 HOH 29 632 632 HOH HOH A . D 4 HOH 30 633 633 HOH HOH A . D 4 HOH 31 634 634 HOH HOH A . D 4 HOH 32 635 635 HOH HOH A . D 4 HOH 33 636 636 HOH HOH A . D 4 HOH 34 637 637 HOH HOH A . D 4 HOH 35 638 638 HOH HOH A . D 4 HOH 36 639 639 HOH HOH A . D 4 HOH 37 640 640 HOH HOH A . D 4 HOH 38 641 641 HOH HOH A . D 4 HOH 39 642 642 HOH HOH A . D 4 HOH 40 643 643 HOH HOH A . D 4 HOH 41 644 644 HOH HOH A . D 4 HOH 42 645 645 HOH HOH A . D 4 HOH 43 646 646 HOH HOH A . D 4 HOH 44 647 647 HOH HOH A . D 4 HOH 45 648 648 HOH HOH A . D 4 HOH 46 649 649 HOH HOH A . D 4 HOH 47 650 650 HOH HOH A . D 4 HOH 48 651 651 HOH HOH A . D 4 HOH 49 652 652 HOH HOH A . D 4 HOH 50 653 653 HOH HOH A . D 4 HOH 51 654 654 HOH HOH A . D 4 HOH 52 655 655 HOH HOH A . D 4 HOH 53 656 656 HOH HOH A . D 4 HOH 54 657 657 HOH HOH A . D 4 HOH 55 658 658 HOH HOH A . D 4 HOH 56 659 659 HOH HOH A . D 4 HOH 57 660 660 HOH HOH A . D 4 HOH 58 661 661 HOH HOH A . D 4 HOH 59 662 662 HOH HOH A . D 4 HOH 60 663 663 HOH HOH A . D 4 HOH 61 664 664 HOH HOH A . D 4 HOH 62 665 665 HOH HOH A . D 4 HOH 63 666 666 HOH HOH A . D 4 HOH 64 667 667 HOH HOH A . D 4 HOH 65 668 668 HOH HOH A . D 4 HOH 66 669 669 HOH HOH A . D 4 HOH 67 670 670 HOH HOH A . D 4 HOH 68 671 671 HOH HOH A . D 4 HOH 69 672 672 HOH HOH A . D 4 HOH 70 673 673 HOH HOH A . D 4 HOH 71 674 674 HOH HOH A . D 4 HOH 72 675 675 HOH HOH A . D 4 HOH 73 676 676 HOH HOH A . D 4 HOH 74 677 677 HOH HOH A . D 4 HOH 75 678 678 HOH HOH A . D 4 HOH 76 679 679 HOH HOH A . D 4 HOH 77 680 680 HOH HOH A . D 4 HOH 78 681 681 HOH HOH A . D 4 HOH 79 682 682 HOH HOH A . D 4 HOH 80 683 683 HOH HOH A . D 4 HOH 81 684 684 HOH HOH A . D 4 HOH 82 685 685 HOH HOH A . D 4 HOH 83 686 686 HOH HOH A . D 4 HOH 84 687 687 HOH HOH A . D 4 HOH 85 688 688 HOH HOH A . D 4 HOH 86 689 689 HOH HOH A . D 4 HOH 87 690 690 HOH HOH A . D 4 HOH 88 691 691 HOH HOH A . D 4 HOH 89 692 692 HOH HOH A . D 4 HOH 90 693 693 HOH HOH A . D 4 HOH 91 694 694 HOH HOH A . D 4 HOH 92 695 695 HOH HOH A . D 4 HOH 93 696 696 HOH HOH A . D 4 HOH 94 697 697 HOH HOH A . D 4 HOH 95 698 698 HOH HOH A . D 4 HOH 96 699 699 HOH HOH A . D 4 HOH 97 700 700 HOH HOH A . D 4 HOH 98 701 701 HOH HOH A . D 4 HOH 99 702 702 HOH HOH A . D 4 HOH 100 703 703 HOH HOH A . D 4 HOH 101 704 704 HOH HOH A . D 4 HOH 102 705 705 HOH HOH A . D 4 HOH 103 706 706 HOH HOH A . D 4 HOH 104 707 707 HOH HOH A . D 4 HOH 105 708 708 HOH HOH A . D 4 HOH 106 709 709 HOH HOH A . D 4 HOH 107 710 710 HOH HOH A . D 4 HOH 108 711 711 HOH HOH A . D 4 HOH 109 712 712 HOH HOH A . D 4 HOH 110 713 713 HOH HOH A . D 4 HOH 111 714 714 HOH HOH A . D 4 HOH 112 715 715 HOH HOH A . D 4 HOH 113 716 716 HOH HOH A . D 4 HOH 114 717 717 HOH HOH A . D 4 HOH 115 718 718 HOH HOH A . D 4 HOH 116 719 719 HOH HOH A . D 4 HOH 117 720 720 HOH HOH A . D 4 HOH 118 721 721 HOH HOH A . D 4 HOH 119 722 722 HOH HOH A . D 4 HOH 120 723 723 HOH HOH A . D 4 HOH 121 724 724 HOH HOH A . D 4 HOH 122 725 725 HOH HOH A . D 4 HOH 123 726 726 HOH HOH A . D 4 HOH 124 727 727 HOH HOH A . D 4 HOH 125 728 728 HOH HOH A . D 4 HOH 126 729 729 HOH HOH A . D 4 HOH 127 730 730 HOH HOH A . D 4 HOH 128 731 731 HOH HOH A . D 4 HOH 129 732 732 HOH HOH A . D 4 HOH 130 733 733 HOH HOH A . D 4 HOH 131 734 734 HOH HOH A . D 4 HOH 132 735 735 HOH HOH A . D 4 HOH 133 736 736 HOH HOH A . D 4 HOH 134 737 737 HOH HOH A . D 4 HOH 135 738 738 HOH HOH A . D 4 HOH 136 739 739 HOH HOH A . D 4 HOH 137 740 740 HOH HOH A . D 4 HOH 138 741 741 HOH HOH A . D 4 HOH 139 742 742 HOH HOH A . D 4 HOH 140 743 743 HOH HOH A . D 4 HOH 141 744 744 HOH HOH A . D 4 HOH 142 745 745 HOH HOH A . D 4 HOH 143 746 746 HOH HOH A . D 4 HOH 144 747 747 HOH HOH A . D 4 HOH 145 748 748 HOH HOH A . D 4 HOH 146 749 749 HOH HOH A . D 4 HOH 147 750 750 HOH HOH A . D 4 HOH 148 751 751 HOH HOH A . D 4 HOH 149 752 752 HOH HOH A . D 4 HOH 150 753 753 HOH HOH A . D 4 HOH 151 754 754 HOH HOH A . D 4 HOH 152 755 755 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5340 ? 1 MORE -18.8 ? 1 'SSA (A^2)' 23030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 52.0750000000 0.0000000000 -1.0000000000 0.0000000000 90.1965458041 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 MOLREP phasing . ? 5 # _pdbx_entry_details.sequence_details ;THIS CONFLICT IS DUE TO THE STRAIN DIFFERENCE (JCM9314 AND GOE1). ; _pdbx_entry_details.entry_id 2ZIO _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 214 ? ? -31.85 144.80 2 1 GLU A 237 ? ? -107.24 -95.67 3 1 GLU A 238 ? ? -44.23 -81.86 4 1 ARG A 239 ? ? 83.68 2.80 5 1 ASP A 292 ? ? 55.38 -156.41 6 1 SER A 333 ? ? -130.48 -62.86 7 1 ASP A 334 ? ? -71.27 -158.21 8 1 ASN A 453 ? ? -104.04 74.10 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -21 ? A MET 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A SER -19 ? A SER 3 4 1 Y 1 A SER -18 ? A SER 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A SER -11 ? A SER 11 12 1 Y 1 A SER -10 ? A SER 12 13 1 Y 1 A GLY -9 ? A GLY 13 14 1 Y 1 A LEU -8 ? A LEU 14 15 1 Y 1 A VAL -7 ? A VAL 15 16 1 Y 1 A PRO -6 ? A PRO 16 17 1 Y 1 A ARG -5 ? A ARG 17 18 1 Y 1 A GLY -4 ? A GLY 18 19 1 Y 1 A SER -3 ? A SER 19 20 1 Y 1 A HIS -2 ? A HIS 20 21 1 Y 1 A MET -1 ? A MET 21 22 1 Y 1 A ALA 185 ? A ALA 22 23 1 Y 1 A SER 186 ? A SER 23 24 1 Y 1 A ALA 187 ? A ALA 24 25 1 Y 1 A ILE 208 ? A ILE 45 26 1 Y 1 A SER 209 ? A SER 46 27 1 Y 1 A LEU 210 ? A LEU 47 28 1 Y 1 A ASN 211 ? A ASN 48 29 1 Y 1 A ASP 281 ? A ASP 118 30 1 Y 1 A THR 282 ? A THR 119 31 1 Y 1 A GLU 283 ? A GLU 120 32 1 Y 1 A LYS 336 ? A LYS 173 33 1 Y 1 A SER 380 ? A SER 217 34 1 Y 1 A CYS 381 ? A CYS 218 35 1 Y 1 A MET 382 ? A MET 219 36 1 Y 1 A VAL 383 ? A VAL 220 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2PN P1 P N N 1 2PN O1 O N N 2 2PN O2 O N N 3 2PN O3 O N N 4 2PN N1 N N N 5 2PN P2 P N N 6 2PN O4 O N N 7 2PN O5 O N N 8 2PN O6 O N N 9 2PN HO2 H N N 10 2PN HO3 H N N 11 2PN HN1 H N N 12 2PN HO5 H N N 13 2PN HO6 H N N 14 ALA N N N N 15 ALA CA C N S 16 ALA C C N N 17 ALA O O N N 18 ALA CB C N N 19 ALA OXT O N N 20 ALA H H N N 21 ALA H2 H N N 22 ALA HA H N N 23 ALA HB1 H N N 24 ALA HB2 H N N 25 ALA HB3 H N N 26 ALA HXT H N N 27 ARG N N N N 28 ARG CA C N S 29 ARG C C N N 30 ARG O O N N 31 ARG CB C N N 32 ARG CG C N N 33 ARG CD C N N 34 ARG NE N N N 35 ARG CZ C N N 36 ARG NH1 N N N 37 ARG NH2 N N N 38 ARG OXT O N N 39 ARG H H N N 40 ARG H2 H N N 41 ARG HA H N N 42 ARG HB2 H N N 43 ARG HB3 H N N 44 ARG HG2 H N N 45 ARG HG3 H N N 46 ARG HD2 H N N 47 ARG HD3 H N N 48 ARG HE H N N 49 ARG HH11 H N N 50 ARG HH12 H N N 51 ARG HH21 H N N 52 ARG HH22 H N N 53 ARG HXT H N N 54 ASN N N N N 55 ASN CA C N S 56 ASN C C N N 57 ASN O O N N 58 ASN CB C N N 59 ASN CG C N N 60 ASN OD1 O N N 61 ASN ND2 N N N 62 ASN OXT O N N 63 ASN H H N N 64 ASN H2 H N N 65 ASN HA H N N 66 ASN HB2 H N N 67 ASN HB3 H N N 68 ASN HD21 H N N 69 ASN HD22 H N N 70 ASN HXT H N N 71 ASP N N N N 72 ASP CA C N S 73 ASP C C N N 74 ASP O O N N 75 ASP CB C N N 76 ASP CG C N N 77 ASP OD1 O N N 78 ASP OD2 O N N 79 ASP OXT O N N 80 ASP H H N N 81 ASP H2 H N N 82 ASP HA H N N 83 ASP HB2 H N N 84 ASP HB3 H N N 85 ASP HD2 H N N 86 ASP HXT H N N 87 AYB C4 C Y N 88 AYB C5 C Y N 89 AYB C6 C Y N 90 AYB C8 C Y N 91 AYB N1 N Y N 92 AYB N3 N Y N 93 AYB CAA C N N 94 AYB CAJ C N N 95 AYB CAO C N N 96 AYB OAW O N N 97 AYB CBA C N N 98 AYB OAD O N N 99 AYB NAV N N N 100 AYB CAP C N N 101 AYB CAM C N N 102 AYB CAN C N N 103 AYB CB C N N 104 AYB CA C N S 105 AYB N N N N 106 AYB C C N N 107 AYB O O N N 108 AYB OAY O N N 109 AYB PBL P N S 110 AYB OAI O N N 111 AYB OAF O N N 112 AYB "O5'" O N N 113 AYB "C5'" C N N 114 AYB "C4'" C N R 115 AYB "O4'" O N N 116 AYB "C3'" C N S 117 AYB "O3'" O N N 118 AYB "C2'" C N R 119 AYB "O2'" O N N 120 AYB "C1'" C N R 121 AYB N9 N Y N 122 AYB N7 N Y N 123 AYB C2 C Y N 124 AYB N6 N N N 125 AYB H8 H N N 126 AYB HAA H N N 127 AYB HAAA H N N 128 AYB HAAB H N N 129 AYB HAJ H N N 130 AYB HAJA H N N 131 AYB HAO H N N 132 AYB HAOA H N N 133 AYB HNAV H N N 134 AYB HAP H N N 135 AYB HAPA H N N 136 AYB HAM H N N 137 AYB HAMA H N N 138 AYB HAN H N N 139 AYB HANA H N N 140 AYB HB H N N 141 AYB HBA H N N 142 AYB HA H N N 143 AYB HN H N N 144 AYB HNA H N N 145 AYB HOAF H N N 146 AYB "H5'" H N N 147 AYB "H5'A" H N N 148 AYB "H4'" H N N 149 AYB "H3'" H N N 150 AYB "HO3'" H N N 151 AYB "H2'" H N N 152 AYB "HO2'" H N N 153 AYB "H1'" H N N 154 AYB H2 H N N 155 AYB HN6 H N N 156 AYB HN6A H N N 157 CYS N N N N 158 CYS CA C N R 159 CYS C C N N 160 CYS O O N N 161 CYS CB C N N 162 CYS SG S N N 163 CYS OXT O N N 164 CYS H H N N 165 CYS H2 H N N 166 CYS HA H N N 167 CYS HB2 H N N 168 CYS HB3 H N N 169 CYS HG H N N 170 CYS HXT H N N 171 GLN N N N N 172 GLN CA C N S 173 GLN C C N N 174 GLN O O N N 175 GLN CB C N N 176 GLN CG C N N 177 GLN CD C N N 178 GLN OE1 O N N 179 GLN NE2 N N N 180 GLN OXT O N N 181 GLN H H N N 182 GLN H2 H N N 183 GLN HA H N N 184 GLN HB2 H N N 185 GLN HB3 H N N 186 GLN HG2 H N N 187 GLN HG3 H N N 188 GLN HE21 H N N 189 GLN HE22 H N N 190 GLN HXT H N N 191 GLU N N N N 192 GLU CA C N S 193 GLU C C N N 194 GLU O O N N 195 GLU CB C N N 196 GLU CG C N N 197 GLU CD C N N 198 GLU OE1 O N N 199 GLU OE2 O N N 200 GLU OXT O N N 201 GLU H H N N 202 GLU H2 H N N 203 GLU HA H N N 204 GLU HB2 H N N 205 GLU HB3 H N N 206 GLU HG2 H N N 207 GLU HG3 H N N 208 GLU HE2 H N N 209 GLU HXT H N N 210 GLY N N N N 211 GLY CA C N N 212 GLY C C N N 213 GLY O O N N 214 GLY OXT O N N 215 GLY H H N N 216 GLY H2 H N N 217 GLY HA2 H N N 218 GLY HA3 H N N 219 GLY HXT H N N 220 HIS N N N N 221 HIS CA C N S 222 HIS C C N N 223 HIS O O N N 224 HIS CB C N N 225 HIS CG C Y N 226 HIS ND1 N Y N 227 HIS CD2 C Y N 228 HIS CE1 C Y N 229 HIS NE2 N Y N 230 HIS OXT O N N 231 HIS H H N N 232 HIS H2 H N N 233 HIS HA H N N 234 HIS HB2 H N N 235 HIS HB3 H N N 236 HIS HD1 H N N 237 HIS HD2 H N N 238 HIS HE1 H N N 239 HIS HE2 H N N 240 HIS HXT H N N 241 HOH O O N N 242 HOH H1 H N N 243 HOH H2 H N N 244 ILE N N N N 245 ILE CA C N S 246 ILE C C N N 247 ILE O O N N 248 ILE CB C N S 249 ILE CG1 C N N 250 ILE CG2 C N N 251 ILE CD1 C N N 252 ILE OXT O N N 253 ILE H H N N 254 ILE H2 H N N 255 ILE HA H N N 256 ILE HB H N N 257 ILE HG12 H N N 258 ILE HG13 H N N 259 ILE HG21 H N N 260 ILE HG22 H N N 261 ILE HG23 H N N 262 ILE HD11 H N N 263 ILE HD12 H N N 264 ILE HD13 H N N 265 ILE HXT H N N 266 LEU N N N N 267 LEU CA C N S 268 LEU C C N N 269 LEU O O N N 270 LEU CB C N N 271 LEU CG C N N 272 LEU CD1 C N N 273 LEU CD2 C N N 274 LEU OXT O N N 275 LEU H H N N 276 LEU H2 H N N 277 LEU HA H N N 278 LEU HB2 H N N 279 LEU HB3 H N N 280 LEU HG H N N 281 LEU HD11 H N N 282 LEU HD12 H N N 283 LEU HD13 H N N 284 LEU HD21 H N N 285 LEU HD22 H N N 286 LEU HD23 H N N 287 LEU HXT H N N 288 LYS N N N N 289 LYS CA C N S 290 LYS C C N N 291 LYS O O N N 292 LYS CB C N N 293 LYS CG C N N 294 LYS CD C N N 295 LYS CE C N N 296 LYS NZ N N N 297 LYS OXT O N N 298 LYS H H N N 299 LYS H2 H N N 300 LYS HA H N N 301 LYS HB2 H N N 302 LYS HB3 H N N 303 LYS HG2 H N N 304 LYS HG3 H N N 305 LYS HD2 H N N 306 LYS HD3 H N N 307 LYS HE2 H N N 308 LYS HE3 H N N 309 LYS HZ1 H N N 310 LYS HZ2 H N N 311 LYS HZ3 H N N 312 LYS HXT H N N 313 MET N N N N 314 MET CA C N S 315 MET C C N N 316 MET O O N N 317 MET CB C N N 318 MET CG C N N 319 MET SD S N N 320 MET CE C N N 321 MET OXT O N N 322 MET H H N N 323 MET H2 H N N 324 MET HA H N N 325 MET HB2 H N N 326 MET HB3 H N N 327 MET HG2 H N N 328 MET HG3 H N N 329 MET HE1 H N N 330 MET HE2 H N N 331 MET HE3 H N N 332 MET HXT H N N 333 PHE N N N N 334 PHE CA C N S 335 PHE C C N N 336 PHE O O N N 337 PHE CB C N N 338 PHE CG C Y N 339 PHE CD1 C Y N 340 PHE CD2 C Y N 341 PHE CE1 C Y N 342 PHE CE2 C Y N 343 PHE CZ C Y N 344 PHE OXT O N N 345 PHE H H N N 346 PHE H2 H N N 347 PHE HA H N N 348 PHE HB2 H N N 349 PHE HB3 H N N 350 PHE HD1 H N N 351 PHE HD2 H N N 352 PHE HE1 H N N 353 PHE HE2 H N N 354 PHE HZ H N N 355 PHE HXT H N N 356 PRO N N N N 357 PRO CA C N S 358 PRO C C N N 359 PRO O O N N 360 PRO CB C N N 361 PRO CG C N N 362 PRO CD C N N 363 PRO OXT O N N 364 PRO H H N N 365 PRO HA H N N 366 PRO HB2 H N N 367 PRO HB3 H N N 368 PRO HG2 H N N 369 PRO HG3 H N N 370 PRO HD2 H N N 371 PRO HD3 H N N 372 PRO HXT H N N 373 SER N N N N 374 SER CA C N S 375 SER C C N N 376 SER O O N N 377 SER CB C N N 378 SER OG O N N 379 SER OXT O N N 380 SER H H N N 381 SER H2 H N N 382 SER HA H N N 383 SER HB2 H N N 384 SER HB3 H N N 385 SER HG H N N 386 SER HXT H N N 387 THR N N N N 388 THR CA C N S 389 THR C C N N 390 THR O O N N 391 THR CB C N R 392 THR OG1 O N N 393 THR CG2 C N N 394 THR OXT O N N 395 THR H H N N 396 THR H2 H N N 397 THR HA H N N 398 THR HB H N N 399 THR HG1 H N N 400 THR HG21 H N N 401 THR HG22 H N N 402 THR HG23 H N N 403 THR HXT H N N 404 TRP N N N N 405 TRP CA C N S 406 TRP C C N N 407 TRP O O N N 408 TRP CB C N N 409 TRP CG C Y N 410 TRP CD1 C Y N 411 TRP CD2 C Y N 412 TRP NE1 N Y N 413 TRP CE2 C Y N 414 TRP CE3 C Y N 415 TRP CZ2 C Y N 416 TRP CZ3 C Y N 417 TRP CH2 C Y N 418 TRP OXT O N N 419 TRP H H N N 420 TRP H2 H N N 421 TRP HA H N N 422 TRP HB2 H N N 423 TRP HB3 H N N 424 TRP HD1 H N N 425 TRP HE1 H N N 426 TRP HE3 H N N 427 TRP HZ2 H N N 428 TRP HZ3 H N N 429 TRP HH2 H N N 430 TRP HXT H N N 431 TYR N N N N 432 TYR CA C N S 433 TYR C C N N 434 TYR O O N N 435 TYR CB C N N 436 TYR CG C Y N 437 TYR CD1 C Y N 438 TYR CD2 C Y N 439 TYR CE1 C Y N 440 TYR CE2 C Y N 441 TYR CZ C Y N 442 TYR OH O N N 443 TYR OXT O N N 444 TYR H H N N 445 TYR H2 H N N 446 TYR HA H N N 447 TYR HB2 H N N 448 TYR HB3 H N N 449 TYR HD1 H N N 450 TYR HD2 H N N 451 TYR HE1 H N N 452 TYR HE2 H N N 453 TYR HH H N N 454 TYR HXT H N N 455 VAL N N N N 456 VAL CA C N S 457 VAL C C N N 458 VAL O O N N 459 VAL CB C N N 460 VAL CG1 C N N 461 VAL CG2 C N N 462 VAL OXT O N N 463 VAL H H N N 464 VAL H2 H N N 465 VAL HA H N N 466 VAL HB H N N 467 VAL HG11 H N N 468 VAL HG12 H N N 469 VAL HG13 H N N 470 VAL HG21 H N N 471 VAL HG22 H N N 472 VAL HG23 H N N 473 VAL HXT H N N 474 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2PN P1 O1 doub N N 1 2PN P1 O2 sing N N 2 2PN P1 O3 sing N N 3 2PN P1 N1 sing N N 4 2PN O2 HO2 sing N N 5 2PN O3 HO3 sing N N 6 2PN N1 P2 sing N N 7 2PN N1 HN1 sing N N 8 2PN P2 O4 doub N N 9 2PN P2 O5 sing N N 10 2PN P2 O6 sing N N 11 2PN O5 HO5 sing N N 12 2PN O6 HO6 sing N N 13 ALA N CA sing N N 14 ALA N H sing N N 15 ALA N H2 sing N N 16 ALA CA C sing N N 17 ALA CA CB sing N N 18 ALA CA HA sing N N 19 ALA C O doub N N 20 ALA C OXT sing N N 21 ALA CB HB1 sing N N 22 ALA CB HB2 sing N N 23 ALA CB HB3 sing N N 24 ALA OXT HXT sing N N 25 ARG N CA sing N N 26 ARG N H sing N N 27 ARG N H2 sing N N 28 ARG CA C sing N N 29 ARG CA CB sing N N 30 ARG CA HA sing N N 31 ARG C O doub N N 32 ARG C OXT sing N N 33 ARG CB CG sing N N 34 ARG CB HB2 sing N N 35 ARG CB HB3 sing N N 36 ARG CG CD sing N N 37 ARG CG HG2 sing N N 38 ARG CG HG3 sing N N 39 ARG CD NE sing N N 40 ARG CD HD2 sing N N 41 ARG CD HD3 sing N N 42 ARG NE CZ sing N N 43 ARG NE HE sing N N 44 ARG CZ NH1 sing N N 45 ARG CZ NH2 doub N N 46 ARG NH1 HH11 sing N N 47 ARG NH1 HH12 sing N N 48 ARG NH2 HH21 sing N N 49 ARG NH2 HH22 sing N N 50 ARG OXT HXT sing N N 51 ASN N CA sing N N 52 ASN N H sing N N 53 ASN N H2 sing N N 54 ASN CA C sing N N 55 ASN CA CB sing N N 56 ASN CA HA sing N N 57 ASN C O doub N N 58 ASN C OXT sing N N 59 ASN CB CG sing N N 60 ASN CB HB2 sing N N 61 ASN CB HB3 sing N N 62 ASN CG OD1 doub N N 63 ASN CG ND2 sing N N 64 ASN ND2 HD21 sing N N 65 ASN ND2 HD22 sing N N 66 ASN OXT HXT sing N N 67 ASP N CA sing N N 68 ASP N H sing N N 69 ASP N H2 sing N N 70 ASP CA C sing N N 71 ASP CA CB sing N N 72 ASP CA HA sing N N 73 ASP C O doub N N 74 ASP C OXT sing N N 75 ASP CB CG sing N N 76 ASP CB HB2 sing N N 77 ASP CB HB3 sing N N 78 ASP CG OD1 doub N N 79 ASP CG OD2 sing N N 80 ASP OD2 HD2 sing N N 81 ASP OXT HXT sing N N 82 AYB C4 C5 doub Y N 83 AYB C4 N3 sing Y N 84 AYB C4 N9 sing Y N 85 AYB C5 C6 sing Y N 86 AYB C5 N7 sing Y N 87 AYB C6 N1 doub Y N 88 AYB C6 N6 sing N N 89 AYB C8 N9 sing Y N 90 AYB C8 N7 doub Y N 91 AYB N1 C2 sing Y N 92 AYB N3 C2 doub Y N 93 AYB CAA CAJ sing N N 94 AYB CAJ CAO sing N N 95 AYB CAO OAW sing N N 96 AYB OAW CBA sing N N 97 AYB CBA OAD doub N N 98 AYB CBA NAV sing N N 99 AYB NAV CAP sing N N 100 AYB CAP CAM sing N N 101 AYB CAM CAN sing N N 102 AYB CAN CB sing N N 103 AYB CB CA sing N N 104 AYB CA N sing N N 105 AYB CA C sing N N 106 AYB C O doub N N 107 AYB C OAY sing N N 108 AYB OAY PBL sing N N 109 AYB PBL OAI doub N N 110 AYB PBL OAF sing N N 111 AYB PBL "O5'" sing N N 112 AYB "O5'" "C5'" sing N N 113 AYB "C5'" "C4'" sing N N 114 AYB "C4'" "O4'" sing N N 115 AYB "C4'" "C3'" sing N N 116 AYB "O4'" "C1'" sing N N 117 AYB "C3'" "O3'" sing N N 118 AYB "C3'" "C2'" sing N N 119 AYB "C2'" "O2'" sing N N 120 AYB "C2'" "C1'" sing N N 121 AYB "C1'" N9 sing N N 122 AYB C8 H8 sing N N 123 AYB CAA HAA sing N N 124 AYB CAA HAAA sing N N 125 AYB CAA HAAB sing N N 126 AYB CAJ HAJ sing N N 127 AYB CAJ HAJA sing N N 128 AYB CAO HAO sing N N 129 AYB CAO HAOA sing N N 130 AYB NAV HNAV sing N N 131 AYB CAP HAP sing N N 132 AYB CAP HAPA sing N N 133 AYB CAM HAM sing N N 134 AYB CAM HAMA sing N N 135 AYB CAN HAN sing N N 136 AYB CAN HANA sing N N 137 AYB CB HB sing N N 138 AYB CB HBA sing N N 139 AYB CA HA sing N N 140 AYB N HN sing N N 141 AYB N HNA sing N N 142 AYB OAF HOAF sing N N 143 AYB "C5'" "H5'" sing N N 144 AYB "C5'" "H5'A" sing N N 145 AYB "C4'" "H4'" sing N N 146 AYB "C3'" "H3'" sing N N 147 AYB "O3'" "HO3'" sing N N 148 AYB "C2'" "H2'" sing N N 149 AYB "O2'" "HO2'" sing N N 150 AYB "C1'" "H1'" sing N N 151 AYB C2 H2 sing N N 152 AYB N6 HN6 sing N N 153 AYB N6 HN6A sing N N 154 CYS N CA sing N N 155 CYS N H sing N N 156 CYS N H2 sing N N 157 CYS CA C sing N N 158 CYS CA CB sing N N 159 CYS CA HA sing N N 160 CYS C O doub N N 161 CYS C OXT sing N N 162 CYS CB SG sing N N 163 CYS CB HB2 sing N N 164 CYS CB HB3 sing N N 165 CYS SG HG sing N N 166 CYS OXT HXT sing N N 167 GLN N CA sing N N 168 GLN N H sing N N 169 GLN N H2 sing N N 170 GLN CA C sing N N 171 GLN CA CB sing N N 172 GLN CA HA sing N N 173 GLN C O doub N N 174 GLN C OXT sing N N 175 GLN CB CG sing N N 176 GLN CB HB2 sing N N 177 GLN CB HB3 sing N N 178 GLN CG CD sing N N 179 GLN CG HG2 sing N N 180 GLN CG HG3 sing N N 181 GLN CD OE1 doub N N 182 GLN CD NE2 sing N N 183 GLN NE2 HE21 sing N N 184 GLN NE2 HE22 sing N N 185 GLN OXT HXT sing N N 186 GLU N CA sing N N 187 GLU N H sing N N 188 GLU N H2 sing N N 189 GLU CA C sing N N 190 GLU CA CB sing N N 191 GLU CA HA sing N N 192 GLU C O doub N N 193 GLU C OXT sing N N 194 GLU CB CG sing N N 195 GLU CB HB2 sing N N 196 GLU CB HB3 sing N N 197 GLU CG CD sing N N 198 GLU CG HG2 sing N N 199 GLU CG HG3 sing N N 200 GLU CD OE1 doub N N 201 GLU CD OE2 sing N N 202 GLU OE2 HE2 sing N N 203 GLU OXT HXT sing N N 204 GLY N CA sing N N 205 GLY N H sing N N 206 GLY N H2 sing N N 207 GLY CA C sing N N 208 GLY CA HA2 sing N N 209 GLY CA HA3 sing N N 210 GLY C O doub N N 211 GLY C OXT sing N N 212 GLY OXT HXT sing N N 213 HIS N CA sing N N 214 HIS N H sing N N 215 HIS N H2 sing N N 216 HIS CA C sing N N 217 HIS CA CB sing N N 218 HIS CA HA sing N N 219 HIS C O doub N N 220 HIS C OXT sing N N 221 HIS CB CG sing N N 222 HIS CB HB2 sing N N 223 HIS CB HB3 sing N N 224 HIS CG ND1 sing Y N 225 HIS CG CD2 doub Y N 226 HIS ND1 CE1 doub Y N 227 HIS ND1 HD1 sing N N 228 HIS CD2 NE2 sing Y N 229 HIS CD2 HD2 sing N N 230 HIS CE1 NE2 sing Y N 231 HIS CE1 HE1 sing N N 232 HIS NE2 HE2 sing N N 233 HIS OXT HXT sing N N 234 HOH O H1 sing N N 235 HOH O H2 sing N N 236 ILE N CA sing N N 237 ILE N H sing N N 238 ILE N H2 sing N N 239 ILE CA C sing N N 240 ILE CA CB sing N N 241 ILE CA HA sing N N 242 ILE C O doub N N 243 ILE C OXT sing N N 244 ILE CB CG1 sing N N 245 ILE CB CG2 sing N N 246 ILE CB HB sing N N 247 ILE CG1 CD1 sing N N 248 ILE CG1 HG12 sing N N 249 ILE CG1 HG13 sing N N 250 ILE CG2 HG21 sing N N 251 ILE CG2 HG22 sing N N 252 ILE CG2 HG23 sing N N 253 ILE CD1 HD11 sing N N 254 ILE CD1 HD12 sing N N 255 ILE CD1 HD13 sing N N 256 ILE OXT HXT sing N N 257 LEU N CA sing N N 258 LEU N H sing N N 259 LEU N H2 sing N N 260 LEU CA C sing N N 261 LEU CA CB sing N N 262 LEU CA HA sing N N 263 LEU C O doub N N 264 LEU C OXT sing N N 265 LEU CB CG sing N N 266 LEU CB HB2 sing N N 267 LEU CB HB3 sing N N 268 LEU CG CD1 sing N N 269 LEU CG CD2 sing N N 270 LEU CG HG sing N N 271 LEU CD1 HD11 sing N N 272 LEU CD1 HD12 sing N N 273 LEU CD1 HD13 sing N N 274 LEU CD2 HD21 sing N N 275 LEU CD2 HD22 sing N N 276 LEU CD2 HD23 sing N N 277 LEU OXT HXT sing N N 278 LYS N CA sing N N 279 LYS N H sing N N 280 LYS N H2 sing N N 281 LYS CA C sing N N 282 LYS CA CB sing N N 283 LYS CA HA sing N N 284 LYS C O doub N N 285 LYS C OXT sing N N 286 LYS CB CG sing N N 287 LYS CB HB2 sing N N 288 LYS CB HB3 sing N N 289 LYS CG CD sing N N 290 LYS CG HG2 sing N N 291 LYS CG HG3 sing N N 292 LYS CD CE sing N N 293 LYS CD HD2 sing N N 294 LYS CD HD3 sing N N 295 LYS CE NZ sing N N 296 LYS CE HE2 sing N N 297 LYS CE HE3 sing N N 298 LYS NZ HZ1 sing N N 299 LYS NZ HZ2 sing N N 300 LYS NZ HZ3 sing N N 301 LYS OXT HXT sing N N 302 MET N CA sing N N 303 MET N H sing N N 304 MET N H2 sing N N 305 MET CA C sing N N 306 MET CA CB sing N N 307 MET CA HA sing N N 308 MET C O doub N N 309 MET C OXT sing N N 310 MET CB CG sing N N 311 MET CB HB2 sing N N 312 MET CB HB3 sing N N 313 MET CG SD sing N N 314 MET CG HG2 sing N N 315 MET CG HG3 sing N N 316 MET SD CE sing N N 317 MET CE HE1 sing N N 318 MET CE HE2 sing N N 319 MET CE HE3 sing N N 320 MET OXT HXT sing N N 321 PHE N CA sing N N 322 PHE N H sing N N 323 PHE N H2 sing N N 324 PHE CA C sing N N 325 PHE CA CB sing N N 326 PHE CA HA sing N N 327 PHE C O doub N N 328 PHE C OXT sing N N 329 PHE CB CG sing N N 330 PHE CB HB2 sing N N 331 PHE CB HB3 sing N N 332 PHE CG CD1 doub Y N 333 PHE CG CD2 sing Y N 334 PHE CD1 CE1 sing Y N 335 PHE CD1 HD1 sing N N 336 PHE CD2 CE2 doub Y N 337 PHE CD2 HD2 sing N N 338 PHE CE1 CZ doub Y N 339 PHE CE1 HE1 sing N N 340 PHE CE2 CZ sing Y N 341 PHE CE2 HE2 sing N N 342 PHE CZ HZ sing N N 343 PHE OXT HXT sing N N 344 PRO N CA sing N N 345 PRO N CD sing N N 346 PRO N H sing N N 347 PRO CA C sing N N 348 PRO CA CB sing N N 349 PRO CA HA sing N N 350 PRO C O doub N N 351 PRO C OXT sing N N 352 PRO CB CG sing N N 353 PRO CB HB2 sing N N 354 PRO CB HB3 sing N N 355 PRO CG CD sing N N 356 PRO CG HG2 sing N N 357 PRO CG HG3 sing N N 358 PRO CD HD2 sing N N 359 PRO CD HD3 sing N N 360 PRO OXT HXT sing N N 361 SER N CA sing N N 362 SER N H sing N N 363 SER N H2 sing N N 364 SER CA C sing N N 365 SER CA CB sing N N 366 SER CA HA sing N N 367 SER C O doub N N 368 SER C OXT sing N N 369 SER CB OG sing N N 370 SER CB HB2 sing N N 371 SER CB HB3 sing N N 372 SER OG HG sing N N 373 SER OXT HXT sing N N 374 THR N CA sing N N 375 THR N H sing N N 376 THR N H2 sing N N 377 THR CA C sing N N 378 THR CA CB sing N N 379 THR CA HA sing N N 380 THR C O doub N N 381 THR C OXT sing N N 382 THR CB OG1 sing N N 383 THR CB CG2 sing N N 384 THR CB HB sing N N 385 THR OG1 HG1 sing N N 386 THR CG2 HG21 sing N N 387 THR CG2 HG22 sing N N 388 THR CG2 HG23 sing N N 389 THR OXT HXT sing N N 390 TRP N CA sing N N 391 TRP N H sing N N 392 TRP N H2 sing N N 393 TRP CA C sing N N 394 TRP CA CB sing N N 395 TRP CA HA sing N N 396 TRP C O doub N N 397 TRP C OXT sing N N 398 TRP CB CG sing N N 399 TRP CB HB2 sing N N 400 TRP CB HB3 sing N N 401 TRP CG CD1 doub Y N 402 TRP CG CD2 sing Y N 403 TRP CD1 NE1 sing Y N 404 TRP CD1 HD1 sing N N 405 TRP CD2 CE2 doub Y N 406 TRP CD2 CE3 sing Y N 407 TRP NE1 CE2 sing Y N 408 TRP NE1 HE1 sing N N 409 TRP CE2 CZ2 sing Y N 410 TRP CE3 CZ3 doub Y N 411 TRP CE3 HE3 sing N N 412 TRP CZ2 CH2 doub Y N 413 TRP CZ2 HZ2 sing N N 414 TRP CZ3 CH2 sing Y N 415 TRP CZ3 HZ3 sing N N 416 TRP CH2 HH2 sing N N 417 TRP OXT HXT sing N N 418 TYR N CA sing N N 419 TYR N H sing N N 420 TYR N H2 sing N N 421 TYR CA C sing N N 422 TYR CA CB sing N N 423 TYR CA HA sing N N 424 TYR C O doub N N 425 TYR C OXT sing N N 426 TYR CB CG sing N N 427 TYR CB HB2 sing N N 428 TYR CB HB3 sing N N 429 TYR CG CD1 doub Y N 430 TYR CG CD2 sing Y N 431 TYR CD1 CE1 sing Y N 432 TYR CD1 HD1 sing N N 433 TYR CD2 CE2 doub Y N 434 TYR CD2 HD2 sing N N 435 TYR CE1 CZ doub Y N 436 TYR CE1 HE1 sing N N 437 TYR CE2 CZ sing Y N 438 TYR CE2 HE2 sing N N 439 TYR CZ OH sing N N 440 TYR OH HH sing N N 441 TYR OXT HXT sing N N 442 VAL N CA sing N N 443 VAL N H sing N N 444 VAL N H2 sing N N 445 VAL CA C sing N N 446 VAL CA CB sing N N 447 VAL CA HA sing N N 448 VAL C O doub N N 449 VAL C OXT sing N N 450 VAL CB CG1 sing N N 451 VAL CB CG2 sing N N 452 VAL CB HB sing N N 453 VAL CG1 HG11 sing N N 454 VAL CG1 HG12 sing N N 455 VAL CG1 HG13 sing N N 456 VAL CG2 HG21 sing N N 457 VAL CG2 HG22 sing N N 458 VAL CG2 HG23 sing N N 459 VAL OXT HXT sing N N 460 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IMIDODIPHOSPHORIC ACID' 2PN 3 "5'-O-[(S)-({(2S)-2-amino-6-[(propoxycarbonyl)amino]hexanoyl}oxy)(hydroxy)phosphoryl]adenosine" AYB 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1WK3 _pdbx_initial_refinement_model.details ? #