data_2ZND # _entry.id 2ZND # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ZND RCSB RCSB028186 WWPDB D_1000028186 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ZN8 'Crystal structure of Zn2+-bound form of ALG-2' unspecified PDB 2ZN9 'Crystal structure of Ca2+-bound form of des3-20ALG-2' unspecified PDB 2ZNE 'Crystal structure of Zn2+-bound form of des3-23ALG-2 complexed with Alix ABS peptide' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZND _pdbx_database_status.recvd_initial_deposition_date 2008-04-22 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, H.' 1 'Kawasaki, M.' 2 'Inuzuka, T.' 3 'Kakiuchi, T.' 4 'Shibata, H.' 5 'Wakatsuki, S.' 6 'Maki, M.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism' Structure 16 1562 1573 2008 STRUE6 UK 0969-2126 2005 ? 18940611 10.1016/j.str.2008.07.012 1 'Crystallization and preliminary crystallographic studies of an apoptosis-linked calcium-binding protein ALG-2' 'Acta Crystallogr.,Sect.D' 57 1162 1163 2001 ABCRE6 DK 0907-4449 0766 ? 11468406 10.1107/S090744490100926X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Suzuki, H.' 1 primary 'Kawasaki, M.' 2 primary 'Inuzuka, T.' 3 primary 'Okumura, M.' 4 primary 'Kakiuchi, T.' 5 primary 'Shibata, H.' 6 primary 'Wakatsuki, S.' 7 primary 'Maki, M.' 8 1 'Wu, F.' 9 1 'Zhang, M.' 10 1 'Gong, W.' 11 # _cell.entry_id 2ZND _cell.length_a 71.148 _cell.length_b 48.833 _cell.length_c 54.183 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZND _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Programmed cell death protein 6' 20158.492 1 ? ? 'residues 20-191' ? 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 5 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 5 water nat water 18.015 131 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Apoptosis-linked gene 2 protein, Probable calcium-binding protein ALG-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVF RTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS YEQYLSMVFSIV ; _entity_poly.pdbx_seq_one_letter_code_can ;AALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVF RTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS YEQYLSMVFSIV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 LEU n 1 4 PRO n 1 5 ASP n 1 6 GLN n 1 7 SER n 1 8 PHE n 1 9 LEU n 1 10 TRP n 1 11 ASN n 1 12 VAL n 1 13 PHE n 1 14 GLN n 1 15 ARG n 1 16 VAL n 1 17 ASP n 1 18 LYS n 1 19 ASP n 1 20 ARG n 1 21 SER n 1 22 GLY n 1 23 VAL n 1 24 ILE n 1 25 SER n 1 26 ASP n 1 27 THR n 1 28 GLU n 1 29 LEU n 1 30 GLN n 1 31 GLN n 1 32 ALA n 1 33 LEU n 1 34 SER n 1 35 ASN n 1 36 GLY n 1 37 THR n 1 38 TRP n 1 39 THR n 1 40 PRO n 1 41 PHE n 1 42 ASN n 1 43 PRO n 1 44 VAL n 1 45 THR n 1 46 VAL n 1 47 ARG n 1 48 SER n 1 49 ILE n 1 50 ILE n 1 51 SER n 1 52 MET n 1 53 PHE n 1 54 ASP n 1 55 ARG n 1 56 GLU n 1 57 ASN n 1 58 LYS n 1 59 ALA n 1 60 GLY n 1 61 VAL n 1 62 ASN n 1 63 PHE n 1 64 SER n 1 65 GLU n 1 66 PHE n 1 67 THR n 1 68 GLY n 1 69 VAL n 1 70 TRP n 1 71 LYS n 1 72 TYR n 1 73 ILE n 1 74 THR n 1 75 ASP n 1 76 TRP n 1 77 GLN n 1 78 ASN n 1 79 VAL n 1 80 PHE n 1 81 ARG n 1 82 THR n 1 83 TYR n 1 84 ASP n 1 85 ARG n 1 86 ASP n 1 87 ASN n 1 88 SER n 1 89 GLY n 1 90 MET n 1 91 ILE n 1 92 ASP n 1 93 LYS n 1 94 ASN n 1 95 GLU n 1 96 LEU n 1 97 LYS n 1 98 GLN n 1 99 ALA n 1 100 LEU n 1 101 SER n 1 102 GLY n 1 103 PHE n 1 104 GLY n 1 105 TYR n 1 106 ARG n 1 107 LEU n 1 108 SER n 1 109 ASP n 1 110 GLN n 1 111 PHE n 1 112 HIS n 1 113 ASP n 1 114 ILE n 1 115 LEU n 1 116 ILE n 1 117 ARG n 1 118 LYS n 1 119 PHE n 1 120 ASP n 1 121 ARG n 1 122 GLN n 1 123 GLY n 1 124 ARG n 1 125 GLY n 1 126 GLN n 1 127 ILE n 1 128 ALA n 1 129 PHE n 1 130 ASP n 1 131 ASP n 1 132 PHE n 1 133 ILE n 1 134 GLN n 1 135 GLY n 1 136 CYS n 1 137 ILE n 1 138 VAL n 1 139 LEU n 1 140 GLN n 1 141 ARG n 1 142 LEU n 1 143 THR n 1 144 ASP n 1 145 ILE n 1 146 PHE n 1 147 ARG n 1 148 ARG n 1 149 TYR n 1 150 ASP n 1 151 THR n 1 152 ASP n 1 153 GLN n 1 154 ASP n 1 155 GLY n 1 156 TRP n 1 157 ILE n 1 158 GLN n 1 159 VAL n 1 160 SER n 1 161 TYR n 1 162 GLU n 1 163 GLN n 1 164 TYR n 1 165 LEU n 1 166 SER n 1 167 MET n 1 168 VAL n 1 169 PHE n 1 170 SER n 1 171 ILE n 1 172 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PDCD6, ALG2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3d _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDCD6_HUMAN _struct_ref.pdbx_db_accession O75340 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVF RTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS YEQYLSMVFSIV ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZND _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75340 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 191 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 191 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZND _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_percent_sol 47.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '40% 2-methyl-2,4-pentanediol, 0.1M Na2HPO4-KH2PO4, 2mM EDTA, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2007-06-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2ZND _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.70 _reflns.number_obs 21369 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 96.4 _reflns_shell.Rmerge_I_obs 0.381 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZND _refine.ls_number_reflns_obs 20149 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.11 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.28 _refine.ls_R_factor_obs 0.19485 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19336 _refine.ls_R_factor_R_free 0.22241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1092 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 20.400 _refine.aniso_B[1][1] -0.54 _refine.aniso_B[2][2] 0.68 _refine.aniso_B[3][3] -0.14 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1HQV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.113 _refine.pdbx_overall_ESU_R_Free 0.108 _refine.overall_SU_ML 0.066 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.946 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1391 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 1575 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 43.11 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 1466 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.293 1.944 ? 1984 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.950 5.000 ? 166 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.286 23.735 ? 83 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.049 15.000 ? 242 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.546 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.102 0.200 ? 205 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1115 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.231 0.200 ? 755 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.312 0.200 ? 1043 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.130 0.200 ? 121 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.107 0.200 ? 10 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.190 0.200 ? 52 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.107 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.769 1.500 ? 825 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.418 2.000 ? 1336 'X-RAY DIFFRACTION' ? r_scbond_it 2.302 3.000 ? 669 'X-RAY DIFFRACTION' ? r_scangle_it 3.641 4.500 ? 648 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 1344 _refine_ls_shell.R_factor_R_work 0.249 _refine_ls_shell.percent_reflns_obs 91.55 _refine_ls_shell.R_factor_R_free 0.299 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZND _struct.title 'Crystal structure of Ca2+-free form of des3-20ALG-2' _struct.pdbx_descriptor 'Programmed cell death protein 6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZND _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'PENTA-EF-HAND PROTEIN, CALCIUM BINDING PROTEIN, Apoptosis, Calcium, Endoplasmic reticulum, Membrane, Nucleus, Polymorphism' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 6 ? ASP A 17 ? GLN A 25 ASP A 36 1 ? 12 HELX_P HELX_P2 2 ASP A 26 ? LEU A 33 ? ASP A 45 LEU A 52 1 ? 8 HELX_P HELX_P3 3 ASN A 42 ? ASP A 54 ? ASN A 61 ASP A 73 1 ? 13 HELX_P HELX_P4 4 ASN A 62 ? ASP A 84 ? ASN A 81 ASP A 103 1 ? 23 HELX_P HELX_P5 5 ASP A 92 ? PHE A 103 ? ASP A 111 PHE A 122 1 ? 12 HELX_P HELX_P6 6 SER A 108 ? ASP A 120 ? SER A 127 ASP A 139 1 ? 13 HELX_P HELX_P7 7 PHE A 129 ? ASP A 150 ? PHE A 148 ASP A 169 1 ? 22 HELX_P HELX_P8 8 SER A 160 ? SER A 170 ? SER A 179 SER A 189 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 171 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 190 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 VAL _struct_mon_prot_cis.pdbx_label_seq_id_2 172 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 VAL _struct_mon_prot_cis.pdbx_auth_seq_id_2 191 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 18.61 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 24 ? SER A 25 ? ILE A 43 SER A 44 A 2 GLY A 60 ? VAL A 61 ? GLY A 79 VAL A 80 B 1 MET A 90 ? ILE A 91 ? MET A 109 ILE A 110 B 2 ILE A 127 ? ALA A 128 ? ILE A 146 ALA A 147 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 24 ? N ILE A 43 O VAL A 61 ? O VAL A 80 B 1 2 N ILE A 91 ? N ILE A 110 O ILE A 127 ? O ILE A 146 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MRD A 1' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MRD A 2' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MRD A 3' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MRD A 4' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MRD A 5' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PO4 A 192' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PO4 A 193' AC8 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 194' AC9 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 195' BC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 196' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 47 ? ARG A 66 . ? 1_555 ? 2 AC1 7 SER A 51 ? SER A 70 . ? 1_555 ? 3 AC1 7 ASP A 54 ? ASP A 73 . ? 1_555 ? 4 AC1 7 ASN A 57 ? ASN A 76 . ? 1_555 ? 5 AC1 7 LYS A 58 ? LYS A 77 . ? 1_555 ? 6 AC1 7 ALA A 59 ? ALA A 78 . ? 1_555 ? 7 AC1 7 HOH L . ? HOH A 307 . ? 1_555 ? 8 AC2 6 SER A 34 ? SER A 53 . ? 1_555 ? 9 AC2 6 ASN A 35 ? ASN A 54 . ? 1_555 ? 10 AC2 6 GLY A 36 ? GLY A 55 . ? 1_555 ? 11 AC2 6 GLN A 77 ? GLN A 96 . ? 1_555 ? 12 AC2 6 ARG A 81 ? ARG A 100 . ? 1_555 ? 13 AC2 6 PHE A 129 ? PHE A 148 . ? 1_555 ? 14 AC3 5 THR A 143 ? THR A 162 . ? 1_555 ? 15 AC3 5 ASP A 150 ? ASP A 169 . ? 1_555 ? 16 AC3 5 GLY A 155 ? GLY A 174 . ? 1_555 ? 17 AC3 5 HOH L . ? HOH A 205 . ? 1_555 ? 18 AC3 5 HOH L . ? HOH A 234 . ? 1_555 ? 19 AC4 4 MRD F . ? MRD A 5 . ? 1_555 ? 20 AC4 4 ASP A 75 ? ASP A 94 . ? 1_555 ? 21 AC4 4 TRP A 76 ? TRP A 95 . ? 1_555 ? 22 AC4 4 VAL A 79 ? VAL A 98 . ? 1_555 ? 23 AC5 6 MRD E . ? MRD A 4 . ? 1_555 ? 24 AC5 6 ARG A 85 ? ARG A 104 . ? 3_454 ? 25 AC5 6 PHE A 103 ? PHE A 122 . ? 1_555 ? 26 AC5 6 TYR A 105 ? TYR A 124 . ? 1_555 ? 27 AC5 6 GLN A 140 ? GLN A 159 . ? 1_555 ? 28 AC5 6 HOH L . ? HOH A 207 . ? 1_555 ? 29 AC6 2 ARG A 121 ? ARG A 140 . ? 1_555 ? 30 AC6 2 GLN A 122 ? GLN A 141 . ? 1_555 ? 31 AC7 2 PHE A 169 ? PHE A 188 . ? 2_565 ? 32 AC7 2 HOH L . ? HOH A 280 . ? 1_555 ? 33 AC8 6 ASP A 17 ? ASP A 36 . ? 1_555 ? 34 AC8 6 ASP A 19 ? ASP A 38 . ? 1_555 ? 35 AC8 6 SER A 21 ? SER A 40 . ? 1_555 ? 36 AC8 6 VAL A 23 ? VAL A 42 . ? 1_555 ? 37 AC8 6 GLU A 28 ? GLU A 47 . ? 1_555 ? 38 AC8 6 HOH L . ? HOH A 268 . ? 1_555 ? 39 AC9 5 ASP A 84 ? ASP A 103 . ? 1_555 ? 40 AC9 5 ASP A 86 ? ASP A 105 . ? 1_555 ? 41 AC9 5 SER A 88 ? SER A 107 . ? 1_555 ? 42 AC9 5 MET A 90 ? MET A 109 . ? 1_555 ? 43 AC9 5 HOH L . ? HOH A 221 . ? 1_555 ? 44 BC1 6 ASP A 150 ? ASP A 169 . ? 1_555 ? 45 BC1 6 ASP A 152 ? ASP A 171 . ? 1_555 ? 46 BC1 6 ASP A 154 ? ASP A 173 . ? 1_555 ? 47 BC1 6 TRP A 156 ? TRP A 175 . ? 1_555 ? 48 BC1 6 HOH L . ? HOH A 223 . ? 1_555 ? 49 BC1 6 HOH L . ? HOH A 252 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ZND _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZND _atom_sites.fract_transf_matrix[1][1] 0.014055 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020478 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018456 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 20 ? ? ? A . n A 1 2 ALA 2 21 ? ? ? A . n A 1 3 LEU 3 22 ? ? ? A . n A 1 4 PRO 4 23 ? ? ? A . n A 1 5 ASP 5 24 ? ? ? A . n A 1 6 GLN 6 25 25 GLN GLN A . n A 1 7 SER 7 26 26 SER SER A . n A 1 8 PHE 8 27 27 PHE PHE A . n A 1 9 LEU 9 28 28 LEU LEU A . n A 1 10 TRP 10 29 29 TRP TRP A . n A 1 11 ASN 11 30 30 ASN ASN A . n A 1 12 VAL 12 31 31 VAL VAL A . n A 1 13 PHE 13 32 32 PHE PHE A . n A 1 14 GLN 14 33 33 GLN GLN A . n A 1 15 ARG 15 34 34 ARG ARG A . n A 1 16 VAL 16 35 35 VAL VAL A . n A 1 17 ASP 17 36 36 ASP ASP A . n A 1 18 LYS 18 37 37 LYS LYS A . n A 1 19 ASP 19 38 38 ASP ASP A . n A 1 20 ARG 20 39 39 ARG ARG A . n A 1 21 SER 21 40 40 SER SER A . n A 1 22 GLY 22 41 41 GLY GLY A . n A 1 23 VAL 23 42 42 VAL VAL A . n A 1 24 ILE 24 43 43 ILE ILE A . n A 1 25 SER 25 44 44 SER SER A . n A 1 26 ASP 26 45 45 ASP ASP A . n A 1 27 THR 27 46 46 THR THR A . n A 1 28 GLU 28 47 47 GLU GLU A . n A 1 29 LEU 29 48 48 LEU LEU A . n A 1 30 GLN 30 49 49 GLN GLN A . n A 1 31 GLN 31 50 50 GLN GLN A . n A 1 32 ALA 32 51 51 ALA ALA A . n A 1 33 LEU 33 52 52 LEU LEU A . n A 1 34 SER 34 53 53 SER SER A . n A 1 35 ASN 35 54 54 ASN ASN A . n A 1 36 GLY 36 55 55 GLY GLY A . n A 1 37 THR 37 56 56 THR THR A . n A 1 38 TRP 38 57 57 TRP TRP A . n A 1 39 THR 39 58 58 THR THR A . n A 1 40 PRO 40 59 59 PRO PRO A . n A 1 41 PHE 41 60 60 PHE PHE A . n A 1 42 ASN 42 61 61 ASN ASN A . n A 1 43 PRO 43 62 62 PRO PRO A . n A 1 44 VAL 44 63 63 VAL VAL A . n A 1 45 THR 45 64 64 THR THR A . n A 1 46 VAL 46 65 65 VAL VAL A . n A 1 47 ARG 47 66 66 ARG ARG A . n A 1 48 SER 48 67 67 SER SER A . n A 1 49 ILE 49 68 68 ILE ILE A . n A 1 50 ILE 50 69 69 ILE ILE A . n A 1 51 SER 51 70 70 SER SER A . n A 1 52 MET 52 71 71 MET MET A . n A 1 53 PHE 53 72 72 PHE PHE A . n A 1 54 ASP 54 73 73 ASP ASP A . n A 1 55 ARG 55 74 74 ARG ARG A . n A 1 56 GLU 56 75 75 GLU GLU A . n A 1 57 ASN 57 76 76 ASN ASN A . n A 1 58 LYS 58 77 77 LYS LYS A . n A 1 59 ALA 59 78 78 ALA ALA A . n A 1 60 GLY 60 79 79 GLY GLY A . n A 1 61 VAL 61 80 80 VAL VAL A . n A 1 62 ASN 62 81 81 ASN ASN A . n A 1 63 PHE 63 82 82 PHE PHE A . n A 1 64 SER 64 83 83 SER SER A . n A 1 65 GLU 65 84 84 GLU GLU A . n A 1 66 PHE 66 85 85 PHE PHE A . n A 1 67 THR 67 86 86 THR THR A . n A 1 68 GLY 68 87 87 GLY GLY A . n A 1 69 VAL 69 88 88 VAL VAL A . n A 1 70 TRP 70 89 89 TRP TRP A . n A 1 71 LYS 71 90 90 LYS LYS A . n A 1 72 TYR 72 91 91 TYR TYR A . n A 1 73 ILE 73 92 92 ILE ILE A . n A 1 74 THR 74 93 93 THR THR A . n A 1 75 ASP 75 94 94 ASP ASP A . n A 1 76 TRP 76 95 95 TRP TRP A . n A 1 77 GLN 77 96 96 GLN GLN A . n A 1 78 ASN 78 97 97 ASN ASN A . n A 1 79 VAL 79 98 98 VAL VAL A . n A 1 80 PHE 80 99 99 PHE PHE A . n A 1 81 ARG 81 100 100 ARG ARG A . n A 1 82 THR 82 101 101 THR THR A . n A 1 83 TYR 83 102 102 TYR TYR A . n A 1 84 ASP 84 103 103 ASP ASP A . n A 1 85 ARG 85 104 104 ARG ARG A . n A 1 86 ASP 86 105 105 ASP ASP A . n A 1 87 ASN 87 106 106 ASN ASN A . n A 1 88 SER 88 107 107 SER SER A . n A 1 89 GLY 89 108 108 GLY GLY A . n A 1 90 MET 90 109 109 MET MET A . n A 1 91 ILE 91 110 110 ILE ILE A . n A 1 92 ASP 92 111 111 ASP ASP A . n A 1 93 LYS 93 112 112 LYS LYS A . n A 1 94 ASN 94 113 113 ASN ASN A . n A 1 95 GLU 95 114 114 GLU GLU A . n A 1 96 LEU 96 115 115 LEU LEU A . n A 1 97 LYS 97 116 116 LYS LYS A . n A 1 98 GLN 98 117 117 GLN GLN A . n A 1 99 ALA 99 118 118 ALA ALA A . n A 1 100 LEU 100 119 119 LEU LEU A . n A 1 101 SER 101 120 120 SER SER A . n A 1 102 GLY 102 121 121 GLY GLY A . n A 1 103 PHE 103 122 122 PHE PHE A . n A 1 104 GLY 104 123 123 GLY GLY A . n A 1 105 TYR 105 124 124 TYR TYR A . n A 1 106 ARG 106 125 125 ARG ARG A . n A 1 107 LEU 107 126 126 LEU LEU A . n A 1 108 SER 108 127 127 SER SER A . n A 1 109 ASP 109 128 128 ASP ASP A . n A 1 110 GLN 110 129 129 GLN GLN A . n A 1 111 PHE 111 130 130 PHE PHE A . n A 1 112 HIS 112 131 131 HIS HIS A . n A 1 113 ASP 113 132 132 ASP ASP A . n A 1 114 ILE 114 133 133 ILE ILE A . n A 1 115 LEU 115 134 134 LEU LEU A . n A 1 116 ILE 116 135 135 ILE ILE A . n A 1 117 ARG 117 136 136 ARG ARG A . n A 1 118 LYS 118 137 137 LYS LYS A . n A 1 119 PHE 119 138 138 PHE PHE A . n A 1 120 ASP 120 139 139 ASP ASP A . n A 1 121 ARG 121 140 140 ARG ARG A . n A 1 122 GLN 122 141 141 GLN GLN A . n A 1 123 GLY 123 142 142 GLY GLY A . n A 1 124 ARG 124 143 143 ARG ARG A . n A 1 125 GLY 125 144 144 GLY GLY A . n A 1 126 GLN 126 145 145 GLN GLN A . n A 1 127 ILE 127 146 146 ILE ILE A . n A 1 128 ALA 128 147 147 ALA ALA A . n A 1 129 PHE 129 148 148 PHE PHE A . n A 1 130 ASP 130 149 149 ASP ASP A . n A 1 131 ASP 131 150 150 ASP ASP A . n A 1 132 PHE 132 151 151 PHE PHE A . n A 1 133 ILE 133 152 152 ILE ILE A . n A 1 134 GLN 134 153 153 GLN GLN A . n A 1 135 GLY 135 154 154 GLY GLY A . n A 1 136 CYS 136 155 155 CYS CYS A . n A 1 137 ILE 137 156 156 ILE ILE A . n A 1 138 VAL 138 157 157 VAL VAL A . n A 1 139 LEU 139 158 158 LEU LEU A . n A 1 140 GLN 140 159 159 GLN GLN A . n A 1 141 ARG 141 160 160 ARG ARG A . n A 1 142 LEU 142 161 161 LEU LEU A . n A 1 143 THR 143 162 162 THR THR A . n A 1 144 ASP 144 163 163 ASP ASP A . n A 1 145 ILE 145 164 164 ILE ILE A . n A 1 146 PHE 146 165 165 PHE PHE A . n A 1 147 ARG 147 166 166 ARG ARG A . n A 1 148 ARG 148 167 167 ARG ARG A . n A 1 149 TYR 149 168 168 TYR TYR A . n A 1 150 ASP 150 169 169 ASP ASP A . n A 1 151 THR 151 170 170 THR THR A . n A 1 152 ASP 152 171 171 ASP ASP A . n A 1 153 GLN 153 172 172 GLN GLN A . n A 1 154 ASP 154 173 173 ASP ASP A . n A 1 155 GLY 155 174 174 GLY GLY A . n A 1 156 TRP 156 175 175 TRP TRP A . n A 1 157 ILE 157 176 176 ILE ILE A . n A 1 158 GLN 158 177 177 GLN GLN A . n A 1 159 VAL 159 178 178 VAL VAL A . n A 1 160 SER 160 179 179 SER SER A . n A 1 161 TYR 161 180 180 TYR TYR A . n A 1 162 GLU 162 181 181 GLU GLU A . n A 1 163 GLN 163 182 182 GLN GLN A . n A 1 164 TYR 164 183 183 TYR TYR A . n A 1 165 LEU 165 184 184 LEU LEU A . n A 1 166 SER 166 185 185 SER SER A . n A 1 167 MET 167 186 186 MET MET A . n A 1 168 VAL 168 187 187 VAL VAL A . n A 1 169 PHE 169 188 188 PHE PHE A . n A 1 170 SER 170 189 189 SER SER A . n A 1 171 ILE 171 190 190 ILE ILE A . n A 1 172 VAL 172 191 191 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD 1 1 1 MRD MRD A . C 2 MRD 1 2 2 MRD MRD A . D 2 MRD 1 3 3 MRD MRD A . E 2 MRD 1 4 4 MRD MRD A . F 2 MRD 1 5 5 MRD MRD A . G 3 PO4 1 192 192 PO4 PO4 A . H 3 PO4 1 193 193 PO4 PO4 A . I 4 NA 1 194 194 NA NA A . J 4 NA 1 195 195 NA NA A . K 4 NA 1 196 196 NA NA A . L 5 HOH 1 197 1 HOH HOH A . L 5 HOH 2 198 2 HOH HOH A . L 5 HOH 3 199 3 HOH HOH A . L 5 HOH 4 200 4 HOH HOH A . L 5 HOH 5 201 5 HOH HOH A . L 5 HOH 6 202 6 HOH HOH A . L 5 HOH 7 203 7 HOH HOH A . L 5 HOH 8 204 8 HOH HOH A . L 5 HOH 9 205 9 HOH HOH A . L 5 HOH 10 206 10 HOH HOH A . L 5 HOH 11 207 11 HOH HOH A . L 5 HOH 12 208 12 HOH HOH A . L 5 HOH 13 209 13 HOH HOH A . L 5 HOH 14 210 14 HOH HOH A . L 5 HOH 15 211 15 HOH HOH A . L 5 HOH 16 212 16 HOH HOH A . L 5 HOH 17 213 17 HOH HOH A . L 5 HOH 18 214 18 HOH HOH A . L 5 HOH 19 215 19 HOH HOH A . L 5 HOH 20 216 20 HOH HOH A . L 5 HOH 21 217 21 HOH HOH A . L 5 HOH 22 218 22 HOH HOH A . L 5 HOH 23 219 23 HOH HOH A . L 5 HOH 24 220 24 HOH HOH A . L 5 HOH 25 221 25 HOH HOH A . L 5 HOH 26 222 26 HOH HOH A . L 5 HOH 27 223 27 HOH HOH A . L 5 HOH 28 224 28 HOH HOH A . L 5 HOH 29 225 29 HOH HOH A . L 5 HOH 30 226 30 HOH HOH A . L 5 HOH 31 227 31 HOH HOH A . L 5 HOH 32 228 32 HOH HOH A . L 5 HOH 33 229 33 HOH HOH A . L 5 HOH 34 230 34 HOH HOH A . L 5 HOH 35 231 35 HOH HOH A . L 5 HOH 36 232 36 HOH HOH A . L 5 HOH 37 233 37 HOH HOH A . L 5 HOH 38 234 38 HOH HOH A . L 5 HOH 39 235 39 HOH HOH A . L 5 HOH 40 236 40 HOH HOH A . L 5 HOH 41 237 41 HOH HOH A . L 5 HOH 42 238 42 HOH HOH A . L 5 HOH 43 239 43 HOH HOH A . L 5 HOH 44 240 44 HOH HOH A . L 5 HOH 45 241 45 HOH HOH A . L 5 HOH 46 242 46 HOH HOH A . L 5 HOH 47 243 47 HOH HOH A . L 5 HOH 48 244 48 HOH HOH A . L 5 HOH 49 245 49 HOH HOH A . L 5 HOH 50 246 50 HOH HOH A . L 5 HOH 51 247 51 HOH HOH A . L 5 HOH 52 248 52 HOH HOH A . L 5 HOH 53 249 53 HOH HOH A . L 5 HOH 54 250 54 HOH HOH A . L 5 HOH 55 251 55 HOH HOH A . L 5 HOH 56 252 56 HOH HOH A . L 5 HOH 57 253 57 HOH HOH A . L 5 HOH 58 254 58 HOH HOH A . L 5 HOH 59 255 59 HOH HOH A . L 5 HOH 60 256 60 HOH HOH A . L 5 HOH 61 257 61 HOH HOH A . L 5 HOH 62 258 62 HOH HOH A . L 5 HOH 63 259 63 HOH HOH A . L 5 HOH 64 260 64 HOH HOH A . L 5 HOH 65 261 65 HOH HOH A . L 5 HOH 66 262 66 HOH HOH A . L 5 HOH 67 263 67 HOH HOH A . L 5 HOH 68 264 68 HOH HOH A . L 5 HOH 69 265 69 HOH HOH A . L 5 HOH 70 266 70 HOH HOH A . L 5 HOH 71 267 71 HOH HOH A . L 5 HOH 72 268 72 HOH HOH A . L 5 HOH 73 269 73 HOH HOH A . L 5 HOH 74 270 74 HOH HOH A . L 5 HOH 75 271 75 HOH HOH A . L 5 HOH 76 272 76 HOH HOH A . L 5 HOH 77 273 77 HOH HOH A . L 5 HOH 78 274 78 HOH HOH A . L 5 HOH 79 275 79 HOH HOH A . L 5 HOH 80 276 80 HOH HOH A . L 5 HOH 81 277 81 HOH HOH A . L 5 HOH 82 278 82 HOH HOH A . L 5 HOH 83 279 83 HOH HOH A . L 5 HOH 84 280 84 HOH HOH A . L 5 HOH 85 281 85 HOH HOH A . L 5 HOH 86 282 86 HOH HOH A . L 5 HOH 87 283 87 HOH HOH A . L 5 HOH 88 284 88 HOH HOH A . L 5 HOH 89 285 89 HOH HOH A . L 5 HOH 90 286 90 HOH HOH A . L 5 HOH 91 287 91 HOH HOH A . L 5 HOH 92 288 92 HOH HOH A . L 5 HOH 93 289 93 HOH HOH A . L 5 HOH 94 290 94 HOH HOH A . L 5 HOH 95 291 95 HOH HOH A . L 5 HOH 96 292 96 HOH HOH A . L 5 HOH 97 293 97 HOH HOH A . L 5 HOH 98 294 98 HOH HOH A . L 5 HOH 99 295 99 HOH HOH A . L 5 HOH 100 296 100 HOH HOH A . L 5 HOH 101 297 101 HOH HOH A . L 5 HOH 102 298 102 HOH HOH A . L 5 HOH 103 299 103 HOH HOH A . L 5 HOH 104 300 104 HOH HOH A . L 5 HOH 105 301 105 HOH HOH A . L 5 HOH 106 302 106 HOH HOH A . L 5 HOH 107 303 107 HOH HOH A . L 5 HOH 108 304 108 HOH HOH A . L 5 HOH 109 305 109 HOH HOH A . L 5 HOH 110 306 110 HOH HOH A . L 5 HOH 111 307 111 HOH HOH A . L 5 HOH 112 308 112 HOH HOH A . L 5 HOH 113 309 113 HOH HOH A . L 5 HOH 114 310 114 HOH HOH A . L 5 HOH 115 311 115 HOH HOH A . L 5 HOH 116 312 116 HOH HOH A . L 5 HOH 117 313 117 HOH HOH A . L 5 HOH 118 314 118 HOH HOH A . L 5 HOH 119 315 119 HOH HOH A . L 5 HOH 120 316 120 HOH HOH A . L 5 HOH 121 317 121 HOH HOH A . L 5 HOH 122 318 122 HOH HOH A . L 5 HOH 123 319 123 HOH HOH A . L 5 HOH 124 320 124 HOH HOH A . L 5 HOH 125 321 125 HOH HOH A . L 5 HOH 126 322 126 HOH HOH A . L 5 HOH 127 323 127 HOH HOH A . L 5 HOH 128 324 128 HOH HOH A . L 5 HOH 129 325 129 HOH HOH A . L 5 HOH 130 326 130 HOH HOH A . L 5 HOH 131 327 131 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7450 ? 1 MORE -102 ? 1 'SSA (A^2)' 17840 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 48.8330000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-09 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C4 ? A MRD 1 ? 'WRONG HAND' . 2 1 C4 ? A MRD 2 ? 'WRONG HAND' . 3 1 C4 ? A MRD 3 ? 'WRONG HAND' . 4 1 C4 ? A MRD 4 ? 'WRONG HAND' . 5 1 C4 ? A MRD 5 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 20 ? A ALA 1 2 1 Y 1 A ALA 21 ? A ALA 2 3 1 Y 1 A LEU 22 ? A LEU 3 4 1 Y 1 A PRO 23 ? A PRO 4 5 1 Y 1 A ASP 24 ? A ASP 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 'PHOSPHATE ION' PO4 4 'SODIUM ION' NA 5 water HOH #