HEADER TRANSCRIPTION 28-APR-08 2ZNL TITLE CRYSTAL STRUCTURE OF PA-PB1 COMPLEX FORM INFLUENZA VIRUS RNA TITLE 2 POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 239-716; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA-DIRECTED RNA POLYMERASE CATALYTIC SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 1-81; COMPND 11 SYNONYM: POLYMERASE BASIC PROTEIN 1, PB1, RNA-DIRECTED RNA POLYMERASE COMPND 12 SUBUNIT P1; COMPND 13 EC: 2.7.7.48; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 211044; SOURCE 4 STRAIN: STRAIN A/PUERTO RICO/8/1934 H1N1; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RILP CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 13 ORGANISM_TAXID: 211044; SOURCE 14 STRAIN: STRAIN A/PUERTO RICO/8/1934 H1N1; SOURCE 15 GENE: PB1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RILP CODONPLUS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS INFLUENZA A VIRUS, RNA POLYMERASE, PA, PB1, SUBUNIT INTERACTION, KEYWDS 2 PHOSPHOPROTEIN, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA KEYWDS 3 REPLICATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.OBAYASHI,H.YOSHIDA,F.KAWAI,N.SHIBAYAMA,A.KAWAGUCHI,K.NAGATA, AUTHOR 2 J.R.H.TAME,S.-Y.PARK REVDAT 3 13-MAR-24 2ZNL 1 REMARK REVDAT 2 24-FEB-09 2ZNL 1 VERSN REVDAT 1 02-SEP-08 2ZNL 0 JRNL AUTH E.OBAYASHI,H.YOSHIDA,F.KAWAI,N.SHIBAYAMA,A.KAWAGUCHI, JRNL AUTH 2 K.NAGATA,J.R.H.TAME,S.-Y.PARK JRNL TITL THE STRUCTURAL BASIS FOR AN ESSENTIAL SUBUNIT INTERACTION IN JRNL TITL 2 INFLUENZA VIRUS RNA POLYMERASE JRNL REF NATURE V. 454 1127 2008 JRNL REFN ISSN 0028-0836 JRNL PMID 18660801 JRNL DOI 10.1038/NATURE07225 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.34000 REMARK 3 B22 (A**2) : 3.34000 REMARK 3 B33 (A**2) : -5.01000 REMARK 3 B12 (A**2) : 1.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.118 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3575 ; 0.032 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4825 ; 2.721 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 8.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;38.950 ;24.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 668 ;21.862 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.197 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2640 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1670 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2476 ; 0.340 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.276 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.052 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2257 ; 1.613 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3531 ; 2.596 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1538 ; 3.889 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1294 ; 5.727 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000028193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30749 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: SHELXD, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL, 2.4M SODIUM FORMATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.68200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.34100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.34100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.68200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 239 REMARK 465 GLY A 240 REMARK 465 TYR A 241 REMARK 465 ILE A 242 REMARK 465 GLU A 243 REMARK 465 GLY A 244 REMARK 465 LYS A 245 REMARK 465 LEU A 246 REMARK 465 SER A 247 REMARK 465 GLN A 248 REMARK 465 MET A 249 REMARK 465 SER A 250 REMARK 465 LYS A 251 REMARK 465 GLU A 252 REMARK 465 VAL A 253 REMARK 465 ASN A 254 REMARK 465 ALA A 255 REMARK 465 ARG A 256 REMARK 465 GLU A 349 REMARK 465 ASN A 350 REMARK 465 GLU A 351 REMARK 465 GLU A 352 REMARK 465 LYS A 353 REMARK 465 GLU A 372 REMARK 465 ASN A 373 REMARK 465 MET A 374 REMARK 465 ALA A 375 REMARK 465 PRO A 376 REMARK 465 GLU A 377 REMARK 465 LYS A 378 REMARK 465 VAL A 379 REMARK 465 ASP A 380 REMARK 465 PHE A 381 REMARK 465 ASP A 382 REMARK 465 ASP A 383 REMARK 465 CYS A 384 REMARK 465 LYS A 385 REMARK 465 ASP A 386 REMARK 465 VAL A 387 REMARK 465 GLY A 388 REMARK 465 ASP A 389 REMARK 465 LEU A 390 REMARK 465 LYS A 391 REMARK 465 GLN A 392 REMARK 465 TYR A 393 REMARK 465 ASP A 394 REMARK 465 SER A 395 REMARK 465 ASP A 396 REMARK 465 GLU A 397 REMARK 465 ILE A 550 REMARK 465 ARG A 551 REMARK 465 SER A 552 REMARK 465 ALA A 553 REMARK 465 ILE A 554 REMARK 465 GLY A 555 REMARK 465 GLN A 556 REMARK 465 VAL A 557 REMARK 465 ASN B 16 REMARK 465 ALA B 17 REMARK 465 ILE B 18 REMARK 465 SER B 19 REMARK 465 THR B 20 REMARK 465 THR B 21 REMARK 465 PHE B 22 REMARK 465 PRO B 23 REMARK 465 TYR B 24 REMARK 465 THR B 25 REMARK 465 GLY B 26 REMARK 465 ASP B 27 REMARK 465 PRO B 28 REMARK 465 PRO B 29 REMARK 465 TYR B 30 REMARK 465 SER B 31 REMARK 465 HIS B 32 REMARK 465 GLY B 33 REMARK 465 THR B 34 REMARK 465 GLY B 35 REMARK 465 THR B 36 REMARK 465 GLY B 37 REMARK 465 TYR B 38 REMARK 465 THR B 39 REMARK 465 MET B 40 REMARK 465 ASP B 41 REMARK 465 THR B 42 REMARK 465 VAL B 43 REMARK 465 ASN B 44 REMARK 465 ARG B 45 REMARK 465 THR B 46 REMARK 465 HIS B 47 REMARK 465 GLN B 48 REMARK 465 TYR B 49 REMARK 465 SER B 50 REMARK 465 GLU B 51 REMARK 465 LYS B 52 REMARK 465 GLY B 53 REMARK 465 ARG B 54 REMARK 465 TRP B 55 REMARK 465 THR B 56 REMARK 465 THR B 57 REMARK 465 ASN B 58 REMARK 465 THR B 59 REMARK 465 GLU B 60 REMARK 465 THR B 61 REMARK 465 GLY B 62 REMARK 465 ALA B 63 REMARK 465 PRO B 64 REMARK 465 GLN B 65 REMARK 465 LEU B 66 REMARK 465 ASN B 67 REMARK 465 PRO B 68 REMARK 465 ILE B 69 REMARK 465 ASP B 70 REMARK 465 GLY B 71 REMARK 465 PRO B 72 REMARK 465 LEU B 73 REMARK 465 PRO B 74 REMARK 465 GLU B 75 REMARK 465 ASP B 76 REMARK 465 ASN B 77 REMARK 465 GLU B 78 REMARK 465 PRO B 79 REMARK 465 SER B 80 REMARK 465 GLY B 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 298 CB GLU A 298 CG 0.117 REMARK 500 VAL A 450 CB VAL A 450 CG2 0.166 REMARK 500 TYR A 458 CD1 TYR A 458 CE1 0.104 REMARK 500 CYS A 474 CB CYS A 474 SG -0.101 REMARK 500 LYS A 615 N LYS A 615 CA 0.145 REMARK 500 SER A 632 CB SER A 632 OG 0.102 REMARK 500 ARG A 638 CG ARG A 638 CD 0.158 REMARK 500 ASN A 647 N ASN A 647 CA -0.125 REMARK 500 ASN A 647 CB ASN A 647 CG -0.196 REMARK 500 ASN A 696 CB ASN A 696 CG -0.161 REMARK 500 SER A 705 CB SER A 705 OG -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 266 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ILE A 292 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 LEU A 304 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 ASP A 419 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 419 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 566 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 583 CG - CD - NE ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 583 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS A 615 C - N - CA ANGL. DEV. = -23.5 DEGREES REMARK 500 ARG A 638 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 638 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASN A 647 C - N - CA ANGL. DEV. = -16.8 DEGREES REMARK 500 ASN A 647 CB - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 GLY A 685 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU B 7 CB - CG - CD1 ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 258 53.68 -91.46 REMARK 500 PRO A 259 -16.40 -38.95 REMARK 500 PRO A 265 96.41 -60.08 REMARK 500 ARG A 279 17.77 -154.79 REMARK 500 LEU A 284 -101.96 -115.72 REMARK 500 HIS A 297 166.27 -38.62 REMARK 500 GLN A 346 84.18 -60.52 REMARK 500 LYS A 358 103.24 -162.78 REMARK 500 LYS A 362 62.83 -65.58 REMARK 500 THR A 363 -177.45 -64.57 REMARK 500 LEU A 366 -72.82 -63.39 REMARK 500 ALA A 433 114.19 158.32 REMARK 500 ALA A 475 -77.00 -83.35 REMARK 500 MET A 477 -24.08 -153.23 REMARK 500 GLU A 533 59.69 -157.19 REMARK 500 LYS A 615 61.82 -112.82 REMARK 500 ILE A 621 17.94 -153.25 REMARK 500 GLU A 677 71.37 -109.40 REMARK 500 ASN A 696 -42.01 -146.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 258 PRO A 259 135.53 REMARK 500 ILE A 695 ASN A 696 -148.54 REMARK 500 ALA B 14 GLN B 15 -143.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 2ZNL A 239 716 UNP P03433 PA_I34A1 239 716 DBREF 2ZNL B 1 81 UNP P03431 RDRP_I34A1 1 81 SEQRES 1 A 478 ASN GLY TYR ILE GLU GLY LYS LEU SER GLN MET SER LYS SEQRES 2 A 478 GLU VAL ASN ALA ARG ILE GLU PRO PHE LEU LYS THR THR SEQRES 3 A 478 PRO ARG PRO LEU ARG LEU PRO ASN GLY PRO PRO CYS SER SEQRES 4 A 478 GLN ARG SER LYS PHE LEU LEU MET ASP ALA LEU LYS LEU SEQRES 5 A 478 SER ILE GLU ASP PRO SER HIS GLU GLY GLU GLY ILE PRO SEQRES 6 A 478 LEU TYR ASP ALA ILE LYS CYS MET ARG THR PHE PHE GLY SEQRES 7 A 478 TRP LYS GLU PRO ASN VAL VAL LYS PRO HIS GLU LYS GLY SEQRES 8 A 478 ILE ASN PRO ASN TYR LEU LEU SER TRP LYS GLN VAL LEU SEQRES 9 A 478 ALA GLU LEU GLN ASP ILE GLU ASN GLU GLU LYS ILE PRO SEQRES 10 A 478 LYS THR LYS ASN MET LYS LYS THR SER GLN LEU LYS TRP SEQRES 11 A 478 ALA LEU GLY GLU ASN MET ALA PRO GLU LYS VAL ASP PHE SEQRES 12 A 478 ASP ASP CYS LYS ASP VAL GLY ASP LEU LYS GLN TYR ASP SEQRES 13 A 478 SER ASP GLU PRO GLU LEU ARG SER LEU ALA SER TRP ILE SEQRES 14 A 478 GLN ASN GLU PHE ASN LYS ALA CYS GLU LEU THR ASP SER SEQRES 15 A 478 SER TRP ILE GLU LEU ASP GLU ILE GLY GLU ASP VAL ALA SEQRES 16 A 478 PRO ILE GLU HIS ILE ALA SER MET ARG ARG ASN TYR PHE SEQRES 17 A 478 THR SER GLU VAL SER HIS CYS ARG ALA THR GLU TYR ILE SEQRES 18 A 478 MET LYS GLY VAL TYR ILE ASN THR ALA LEU LEU ASN ALA SEQRES 19 A 478 SER CYS ALA ALA MET ASP ASP PHE GLN LEU ILE PRO MET SEQRES 20 A 478 ILE SER LYS CYS ARG THR LYS GLU GLY ARG ARG LYS THR SEQRES 21 A 478 ASN LEU TYR GLY PHE ILE ILE LYS GLY ARG SER HIS LEU SEQRES 22 A 478 ARG ASN ASP THR ASP VAL VAL ASN PHE VAL SER MET GLU SEQRES 23 A 478 PHE SER LEU THR ASP PRO ARG LEU GLU PRO HIS LYS TRP SEQRES 24 A 478 GLU LYS TYR CYS VAL LEU GLU ILE GLY ASP MET LEU ILE SEQRES 25 A 478 ARG SER ALA ILE GLY GLN VAL SER ARG PRO MET PHE LEU SEQRES 26 A 478 TYR VAL ARG THR ASN GLY THR SER LYS ILE LYS MET LYS SEQRES 27 A 478 TRP GLY MET GLU MET ARG ARG CYS LEU LEU GLN SER LEU SEQRES 28 A 478 GLN GLN ILE GLU SER MET ILE GLU ALA GLU SER SER VAL SEQRES 29 A 478 LYS GLU LYS ASP MET THR LYS GLU PHE PHE GLU ASN LYS SEQRES 30 A 478 SER GLU THR TRP PRO ILE GLY GLU SER PRO LYS GLY VAL SEQRES 31 A 478 GLU GLU SER SER ILE GLY LYS VAL CYS ARG THR LEU LEU SEQRES 32 A 478 ALA LYS SER VAL PHE ASN SER LEU TYR ALA SER PRO GLN SEQRES 33 A 478 LEU GLU GLY PHE SER ALA GLU SER ARG LYS LEU LEU LEU SEQRES 34 A 478 ILE VAL GLN ALA LEU ARG ASP ASN LEU GLU PRO GLY THR SEQRES 35 A 478 PHE ASP LEU GLY GLY LEU TYR GLU ALA ILE GLU GLU CYS SEQRES 36 A 478 LEU ILE ASN ASP PRO TRP VAL LEU LEU ASN ALA SER TRP SEQRES 37 A 478 PHE ASN SER PHE LEU THR HIS ALA LEU SER SEQRES 1 B 81 MET ASP VAL ASN PRO THR LEU LEU PHE LEU LYS VAL PRO SEQRES 2 B 81 ALA GLN ASN ALA ILE SER THR THR PHE PRO TYR THR GLY SEQRES 3 B 81 ASP PRO PRO TYR SER HIS GLY THR GLY THR GLY TYR THR SEQRES 4 B 81 MET ASP THR VAL ASN ARG THR HIS GLN TYR SER GLU LYS SEQRES 5 B 81 GLY ARG TRP THR THR ASN THR GLU THR GLY ALA PRO GLN SEQRES 6 B 81 LEU ASN PRO ILE ASP GLY PRO LEU PRO GLU ASP ASN GLU SEQRES 7 B 81 PRO SER GLY FORMUL 3 HOH *70(H2 O) HELIX 1 1 ILE A 302 ARG A 312 1 11 HELIX 2 2 ILE A 330 GLN A 346 1 17 HELIX 3 3 THR A 363 LEU A 370 1 8 HELIX 4 4 SER A 405 CYS A 415 1 11 HELIX 5 5 GLU A 436 SER A 451 1 16 HELIX 6 6 CYS A 453 ALA A 475 1 23 HELIX 7 7 ASP A 529 GLU A 533 5 5 HELIX 8 8 LYS A 572 GLU A 580 1 9 HELIX 9 9 ARG A 582 LYS A 603 1 22 HELIX 10 10 MET A 607 ASN A 614 1 8 HELIX 11 11 SER A 632 TYR A 650 1 19 HELIX 12 12 SER A 652 ASN A 675 1 24 HELIX 13 13 GLY A 685 GLU A 692 1 8 HELIX 14 14 ASP A 697 LEU A 715 1 19 HELIX 15 15 PRO B 5 LYS B 11 5 7 SHEET 1 A 6 LEU A 290 GLU A 293 0 SHEET 2 A 6 ARG A 496 LYS A 506 -1 O THR A 498 N ILE A 292 SHEET 3 A 6 VAL A 517 SER A 526 -1 O MET A 523 N PHE A 503 SHEET 4 A 6 ARG A 559 SER A 571 -1 O TYR A 564 N GLU A 524 SHEET 5 A 6 CYS A 541 MET A 548 -1 N CYS A 541 O VAL A 565 SHEET 6 A 6 TRP A 317 LYS A 324 -1 N VAL A 323 O VAL A 542 SHEET 1 B 3 LEU A 290 GLU A 293 0 SHEET 2 B 3 ARG A 496 LYS A 506 -1 O THR A 498 N ILE A 292 SHEET 3 B 3 LEU A 482 ARG A 490 -1 N ILE A 483 O ILE A 504 SHEET 1 C 3 GLY A 627 SER A 631 0 SHEET 2 C 3 TRP A 619 SER A 624 -1 N SER A 624 O GLY A 627 SHEET 3 C 3 ASP B 2 VAL B 3 -1 O ASP B 2 N GLU A 623 CRYST1 101.957 101.957 115.023 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009808 0.005663 0.000000 0.00000 SCALE2 0.000000 0.011325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008694 0.00000