HEADER IMMUNE SYSTEM 22-MAY-08 2ZOL TITLE CRYSTAL STRUCTURE OF H-2DB IN COMPLEX WITH THE W513S VARIANT OF JHMV TITLE 2 EPITOPE S510 COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 25-299; COMPND 5 SYNONYM: H-2D(B); COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: D, B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 9-MERIC PEPTIDE FROM SPIKE GLYCOPROTEIN; COMPND 13 CHAIN: F, E; COMPND 14 FRAGMENT: UNP RESIDUES 510-518; COMPND 15 SYNONYM: PEPTIDIC EPITOPE S510; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS IMMUNE SYSTEM, IG FOLD, GLYCOPROTEIN, IMMUNE RESPONSE, MEMBRANE, MHC KEYWDS 2 I, TRANSMEMBRANE, IMMUNOGLOBULIN DOMAIN, POLYMORPHISM, SECRETED, KEYWDS 3 CLEAVAGE ON PAIR OF BASIC RESIDUES, COILED COIL, ENVELOPE PROTEIN, KEYWDS 4 FUSION PROTEIN, HOST-VIRUS INTERACTION, VIRION, VIRULENCE EXPDTA X-RAY DIFFRACTION AUTHOR A.THEODOSSIS,M.A.DUNSTONE,J.ROSSJOHN REVDAT 8 15-NOV-23 2ZOL 1 REMARK REVDAT 7 01-NOV-23 2ZOL 1 REMARK REVDAT 6 10-NOV-21 2ZOL 1 REMARK SEQADV REVDAT 5 06-NOV-19 2ZOL 1 JRNL SEQADV LINK REVDAT 4 11-OCT-17 2ZOL 1 REMARK REVDAT 3 29-DEC-09 2ZOL 1 REMARK REVDAT 2 24-FEB-09 2ZOL 1 VERSN REVDAT 1 10-JUN-08 2ZOL 0 JRNL AUTH N.S.BUTLER,A.THEODOSSIS,A.I.WEBB,M.A.DUNSTONE,R.NASTOVSKA, JRNL AUTH 2 S.H.RAMARATHINAM,J.ROSSJOHN,A.W.PURCELL,S.PERLMAN JRNL TITL STRUCTURAL AND BIOLOGICAL BASIS OF CTL ESCAPE IN JRNL TITL 2 CORONAVIRUS-INFECTED MICE. JRNL REF J IMMUNOL. V. 180 3926 2008 JRNL REFN ISSN 0022-1767 JRNL PMID 18322201 JRNL DOI 10.4049/JIMMUNOL.180.6.3926 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1368 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1861 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.460 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.412 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.870 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.795 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6180 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8387 ; 0.960 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 716 ; 5.114 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;33.546 ;23.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1008 ;17.330 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;15.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 843 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4826 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2461 ; 0.174 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4001 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3758 ; 0.529 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5861 ; 0.954 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2888 ; 0.663 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2526 ; 1.061 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 180 3 REMARK 3 1 C 2 C 180 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 708 ; 0.03 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 760 ; 0.42 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 708 ; 0.02 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 760 ; 0.54 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 181 A 274 3 REMARK 3 1 C 181 C 274 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 316 ; 0.02 ; 0.05 REMARK 3 LOOSE POSITIONAL 2 A (A): 327 ; 0.61 ; 5.00 REMARK 3 TIGHT THERMAL 2 A (A**2): 316 ; 0.02 ; 0.50 REMARK 3 LOOSE THERMAL 2 A (A**2): 327 ; 0.40 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 2 B 99 3 REMARK 3 1 D 2 D 99 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 B (A): 392 ; 0.02 ; 0.05 REMARK 3 LOOSE POSITIONAL 3 B (A): 421 ; 0.45 ; 5.00 REMARK 3 TIGHT THERMAL 3 B (A**2): 392 ; 0.03 ; 0.50 REMARK 3 LOOSE THERMAL 3 B (A**2): 421 ; 0.65 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : E F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 E 1 E 9 3 REMARK 3 1 F 1 F 9 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 E (A): 36 ; 0.02 ; 0.05 REMARK 3 LOOSE POSITIONAL 4 E (A): 28 ; 0.04 ; 5.00 REMARK 3 TIGHT THERMAL 4 E (A**2): 36 ; 0.02 ; 0.50 REMARK 3 LOOSE THERMAL 4 E (A**2): 28 ; 0.41 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NUMBER WATER CHAINS FOR FINAL H2DBW4S REMARK 3 MODEL REMARK 4 REMARK 4 2ZOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000028229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27219 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 54.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BZ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 28% PEG 3350, REMARK 280 0.15M LITHIUM SULFATE, PH 6.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -71.03300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 17 REMARK 465 GLU A 18 REMARK 465 GLN A 218 REMARK 465 LEU A 219 REMARK 465 ASN A 220 REMARK 465 GLY A 221 REMARK 465 GLU A 222 REMARK 465 GLU A 223 REMARK 465 LEU A 224 REMARK 465 THR A 225 REMARK 465 GLN A 226 REMARK 465 ASP A 227 REMARK 465 GLY A 252 REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 275 REMARK 465 ARG A 276 REMARK 465 TRP A 277 REMARK 465 GLU A 278 REMARK 465 GLY C 1 REMARK 465 LEU C 17 REMARK 465 GLU C 18 REMARK 465 GLN C 218 REMARK 465 LEU C 219 REMARK 465 ASN C 220 REMARK 465 GLY C 221 REMARK 465 GLU C 222 REMARK 465 GLU C 223 REMARK 465 LEU C 224 REMARK 465 THR C 225 REMARK 465 GLN C 226 REMARK 465 ASP C 227 REMARK 465 PRO C 250 REMARK 465 LEU C 251 REMARK 465 GLY C 252 REMARK 465 LYS C 253 REMARK 465 GLU C 254 REMARK 465 GLU C 275 REMARK 465 ARG C 276 REMARK 465 TRP C 277 REMARK 465 GLU C 278 REMARK 465 MET D 0 REMARK 465 ILE D 1 REMARK 465 MET B 0 REMARK 465 ILE B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 35 O MET D 54 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 196 -11.83 118.79 REMARK 500 PRO A 250 -165.03 -71.20 REMARK 500 LYS C 196 -14.40 120.82 REMARK 500 TRP D 60 -22.02 86.59 REMARK 500 ASN B 42 16.37 59.81 REMARK 500 TRP B 60 -22.42 85.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 10 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZOK RELATED DB: PDB REMARK 900 COMPLEX OF THE INDEX S510 EPITOPE DBREF 2ZOL A 1 275 UNP P01899 HA11_MOUSE 25 299 DBREF 2ZOL C 1 275 UNP P01899 HA11_MOUSE 25 299 DBREF 2ZOL D 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 2ZOL B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 2ZOL F 1 9 UNP Q02385 SPIKE_CVMJC 510 518 DBREF 2ZOL E 1 9 UNP Q02385 SPIKE_CVMJC 510 518 SEQADV 2ZOL ARG A 276 UNP P01899 EXPRESSION TAG SEQADV 2ZOL TRP A 277 UNP P01899 EXPRESSION TAG SEQADV 2ZOL GLU A 278 UNP P01899 EXPRESSION TAG SEQADV 2ZOL ARG C 276 UNP P01899 EXPRESSION TAG SEQADV 2ZOL TRP C 277 UNP P01899 EXPRESSION TAG SEQADV 2ZOL GLU C 278 UNP P01899 EXPRESSION TAG SEQADV 2ZOL MET D 0 UNP P01887 INITIATING METHIONINE SEQADV 2ZOL MET B 0 UNP P01887 INITIATING METHIONINE SEQADV 2ZOL ABA F 1 UNP Q02385 CYS 510 MODIFIED RESIDUE SEQADV 2ZOL SER F 4 UNP Q02385 TRP 513 ENGINEERED MUTATION SEQADV 2ZOL ABA E 1 UNP Q02385 CYS 510 MODIFIED RESIDUE SEQADV 2ZOL SER E 4 UNP Q02385 TRP 513 ENGINEERED MUTATION SEQRES 1 A 278 GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SER SEQRES 2 A 278 ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY SEQRES 3 A 278 TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 278 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 278 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 278 LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU SEQRES 7 A 278 ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 A 278 SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SEQRES 9 A 278 SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA SEQRES 10 A 278 TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 278 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 278 ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR SEQRES 13 A 278 LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS SEQRES 14 A 278 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 278 ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER SEQRES 16 A 278 LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 278 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 278 GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 278 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 278 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 A 278 VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 278 TRP GLU ARG TRP GLU SEQRES 1 C 278 GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SER SEQRES 2 C 278 ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY SEQRES 3 C 278 TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 C 278 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET SEQRES 5 C 278 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 C 278 LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU SEQRES 7 C 278 ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 C 278 SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SEQRES 9 C 278 SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA SEQRES 10 C 278 TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 C 278 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 C 278 ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR SEQRES 13 C 278 LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS SEQRES 14 C 278 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 C 278 ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER SEQRES 16 C 278 LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 C 278 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 C 278 GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 C 278 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 C 278 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 C 278 VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 C 278 TRP GLU ARG TRP GLU SEQRES 1 D 100 MET ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 D 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 D 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 D 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 D 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 D 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 D 100 TYR ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO SEQRES 8 D 100 LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 B 100 MET ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 B 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 B 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 B 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 B 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 B 100 TYR ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO SEQRES 8 B 100 LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 F 9 ABA SER LEU SER ASN GLY PRO HIS LEU SEQRES 1 E 9 ABA SER LEU SER ASN GLY PRO HIS LEU MODRES 2ZOL ABA F 1 ALA ALPHA-AMINOBUTYRIC ACID MODRES 2ZOL ABA E 1 ALA ALPHA-AMINOBUTYRIC ACID HET ABA F 1 6 HET ABA E 1 6 HET SO4 F 10 5 HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM SO4 SULFATE ION FORMUL 5 ABA 2(C4 H9 N O2) FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *116(H2 O) HELIX 1 1 ALA A 49 GLU A 55 5 7 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 SER A 150 1 14 HELIX 4 4 GLY A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 LEU A 180 1 6 HELIX 7 7 ALA C 49 GLU C 55 5 7 HELIX 8 8 GLY C 56 TYR C 85 1 30 HELIX 9 9 ASP C 137 SER C 150 1 14 HELIX 10 10 GLY C 151 GLY C 162 1 12 HELIX 11 11 GLY C 162 GLY C 175 1 14 HELIX 12 12 GLY C 175 LEU C 180 1 6 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 LYS A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N SER A 24 O PHE A 36 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 THR A 94 LEU A 103 -1 O LEU A 103 N HIS A 3 SHEET 6 A 8 LEU A 109 TYR A 118 -1 O ARG A 111 N ASP A 102 SHEET 7 A 8 ARG A 121 LEU A 126 -1 O LEU A 126 N LEU A 114 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 PRO A 193 0 SHEET 2 B 4 VAL A 199 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 B 4 PHE A 241 VAL A 249 -1 O VAL A 249 N VAL A 199 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 C 4 LYS A 186 PRO A 193 0 SHEET 2 C 4 VAL A 199 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 C 4 PHE A 241 VAL A 249 -1 O VAL A 249 N VAL A 199 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 3 THR A 214 THR A 216 0 SHEET 2 D 3 CYS A 259 TYR A 262 -1 O ARG A 260 N THR A 216 SHEET 3 D 3 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 8 GLU C 46 PRO C 47 0 SHEET 2 E 8 LYS C 31 ASP C 37 -1 N ARG C 35 O GLU C 46 SHEET 3 E 8 ARG C 21 VAL C 28 -1 N SER C 24 O PHE C 36 SHEET 4 E 8 HIS C 3 VAL C 12 -1 N ARG C 6 O TYR C 27 SHEET 5 E 8 THR C 94 LEU C 103 -1 O LEU C 103 N HIS C 3 SHEET 6 E 8 LEU C 109 TYR C 118 -1 O ARG C 111 N ASP C 102 SHEET 7 E 8 ARG C 121 LEU C 126 -1 O LEU C 126 N LEU C 114 SHEET 8 E 8 TRP C 133 ALA C 135 -1 O THR C 134 N ALA C 125 SHEET 1 F 4 LYS C 186 PRO C 193 0 SHEET 2 F 4 VAL C 199 PHE C 208 -1 O TRP C 204 N HIS C 188 SHEET 3 F 4 PHE C 241 VAL C 249 -1 O VAL C 249 N VAL C 199 SHEET 4 F 4 GLU C 229 LEU C 230 -1 N GLU C 229 O SER C 246 SHEET 1 G 4 LYS C 186 PRO C 193 0 SHEET 2 G 4 VAL C 199 PHE C 208 -1 O TRP C 204 N HIS C 188 SHEET 3 G 4 PHE C 241 VAL C 249 -1 O VAL C 249 N VAL C 199 SHEET 4 G 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 H 3 THR C 214 THR C 216 0 SHEET 2 H 3 CYS C 259 TYR C 262 -1 O ARG C 260 N THR C 216 SHEET 3 H 3 LEU C 270 LEU C 272 -1 O LEU C 272 N CYS C 259 SHEET 1 I 4 GLN D 6 SER D 11 0 SHEET 2 I 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 I 4 PHE D 62 PHE D 70 -1 O ALA D 66 N CYS D 25 SHEET 4 I 4 GLU D 50 MET D 51 -1 N GLU D 50 O HIS D 67 SHEET 1 J 4 GLN D 6 SER D 11 0 SHEET 2 J 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 J 4 PHE D 62 PHE D 70 -1 O ALA D 66 N CYS D 25 SHEET 4 J 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 K 4 LYS D 44 LYS D 45 0 SHEET 2 K 4 GLU D 36 LYS D 41 -1 N LYS D 41 O LYS D 44 SHEET 3 K 4 TYR D 78 LYS D 83 -1 O LYS D 83 N GLU D 36 SHEET 4 K 4 LYS D 91 TYR D 94 -1 O LYS D 91 N VAL D 82 SHEET 1 L 4 GLN B 6 SER B 11 0 SHEET 2 L 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 L 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 L 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 M 4 GLN B 6 SER B 11 0 SHEET 2 M 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 M 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 M 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 N 4 LYS B 44 LYS B 45 0 SHEET 2 N 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 N 4 TYR B 78 LYS B 83 -1 O LYS B 83 N GLU B 36 SHEET 4 N 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.02 SSBOND 3 CYS C 101 CYS C 164 1555 1555 2.04 SSBOND 4 CYS C 203 CYS C 259 1555 1555 2.02 SSBOND 5 CYS D 25 CYS D 80 1555 1555 2.03 SSBOND 6 CYS B 25 CYS B 80 1555 1555 2.03 LINK C ABA F 1 N SER F 2 1555 1555 1.33 LINK C ABA E 1 N SER E 2 1555 1555 1.33 CISPEP 1 ALA A 89 GLY A 90 0 -3.54 CISPEP 2 TYR A 209 PRO A 210 0 0.24 CISPEP 3 PRO C 15 GLY C 16 0 -15.53 CISPEP 4 ALA C 89 GLY C 90 0 -3.17 CISPEP 5 TYR C 209 PRO C 210 0 -0.87 CISPEP 6 HIS D 31 PRO D 32 0 4.34 CISPEP 7 HIS B 31 PRO B 32 0 1.83 SITE 1 AC1 6 LYS A 146 LYS C 146 PRO E 7 HIS E 8 SITE 2 AC1 6 PRO F 7 HIS F 8 CRYST1 83.561 71.033 86.999 90.00 103.45 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011967 0.000000 0.002863 0.00000 SCALE2 0.000000 0.014078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011819 0.00000