HEADER TRANSFERASE 04-NOV-08 2ZV8 TITLE LYN TYROSINE KINASE DOMAIN-AMP-PNP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE LYN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 239-512; COMPND 5 EC: 2.7.10.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS LYN KINASE AMPPNP, ALTERNATIVE SPLICING, ATP-BINDING, KINASE, KEYWDS 2 LIPOPROTEIN, MYRISTATE, NUCLEOTIDE-BINDING, PALMITATE, KEYWDS 3 PHOSPHOPROTEIN, PROTO-ONCOGENE, SH2 DOMAIN, SH3 DOMAIN, TRANSFERASE, KEYWDS 4 TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR N.K.WILLIAMS,J.ROSSJOHN REVDAT 4 01-NOV-23 2ZV8 1 REMARK SEQADV REVDAT 3 13-JAN-09 2ZV8 1 JRNL VERSN REVDAT 2 18-NOV-08 2ZV8 1 AUTHOR REVDAT 1 11-NOV-08 2ZV8 0 JRNL AUTH N.K.WILLIAMS,I.S.LUCET,S.P.KLINKEN,E.INGLEY,J.ROSSJOHN JRNL TITL CRYSTAL STRUCTURES OF THE LYN PROTEIN TYROSINE KINASE DOMAIN JRNL TITL 2 IN ITS APO- AND INHIBITOR-BOUND STATE JRNL REF J.BIOL.CHEM. V. 284 284 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 18984583 JRNL DOI 10.1074/JBC.M807850200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 417 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 641 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.563 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.331 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.540 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2134 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2891 ; 1.153 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 5.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;38.984 ;24.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;17.091 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.868 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1567 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 987 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1438 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 56 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.140 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1325 ; 0.815 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2073 ; 1.510 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 948 ; 2.332 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 818 ; 3.400 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000028467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9082 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1QPD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% POLYETHYLENE GLYCOL 3350, 0.1M REMARK 280 NACL, 0.1M NA-HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.61950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.73074 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.29167 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 63.61950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 36.73074 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.29167 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 63.61950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 36.73074 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.29167 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.46147 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.58333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 73.46147 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.58333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 73.46147 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 234 REMARK 465 ALA A 235 REMARK 465 MET A 236 REMARK 465 ASP A 237 REMARK 465 GLU A 393 REMARK 465 ASP A 394 REMARK 465 ASN A 395 REMARK 465 GLU A 396 REMARK 465 TYR A 397 REMARK 465 THR A 398 REMARK 465 ALA A 399 REMARK 465 THR A 502 REMARK 465 ALA A 503 REMARK 465 THR A 504 REMARK 465 GLU A 505 REMARK 465 GLY A 506 REMARK 465 GLN A 507 REMARK 465 TYR A 508 REMARK 465 GLN A 509 REMARK 465 GLN A 510 REMARK 465 GLN A 511 REMARK 465 PRO A 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 257 CG CD OE1 NE2 REMARK 470 ARG A 400 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 LYS A 477 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 239 36.47 -97.92 REMARK 500 VAL A 250 -61.43 -107.01 REMARK 500 ALA A 255 -134.36 -109.87 REMARK 500 ASN A 267 64.32 33.01 REMARK 500 ASN A 268 -42.88 68.77 REMARK 500 THR A 281 -83.44 -70.23 REMARK 500 ARG A 366 -10.27 76.02 REMARK 500 ASP A 385 76.26 66.14 REMARK 500 PHE A 386 34.27 -98.89 REMARK 500 ALA A 403 123.74 112.00 REMARK 500 ASP A 499 38.01 -95.88 REMARK 500 PHE A 500 30.66 -94.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 400 GLU A 401 148.03 REMARK 500 GLU A 401 GLY A 402 -118.58 REMARK 500 GLY A 402 ALA A 403 149.23 REMARK 500 PHE A 500 TYR A 501 -146.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZV7 RELATED DB: PDB REMARK 900 LYN PROTEIN TYROSINE KINASE DOMAIN, APO-FORM REMARK 900 RELATED ID: 2ZV9 RELATED DB: PDB REMARK 900 LYN PROTEIN TYROSINE KINASE DOMAIN-PP2 COMPLEX REMARK 900 RELATED ID: 2ZVA RELATED DB: PDB REMARK 900 LYN PROTEIN TYROSINE KINASE DOMAIN-DASATINIB COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS BASED ON REFERENCE 1 IN THE DATABASE, REMARK 999 LYN_MOUSE. DBREF 2ZV8 A 239 512 UNP P25911 LYN_MOUSE 239 512 SEQADV 2ZV8 GLY A 234 UNP P25911 EXPRESSION TAG SEQADV 2ZV8 ALA A 235 UNP P25911 EXPRESSION TAG SEQADV 2ZV8 MET A 236 UNP P25911 EXPRESSION TAG SEQADV 2ZV8 ASP A 237 UNP P25911 EXPRESSION TAG SEQADV 2ZV8 PRO A 238 UNP P25911 EXPRESSION TAG SEQRES 1 A 279 GLY ALA MET ASP PRO ALA TRP GLU ILE PRO ARG GLU SER SEQRES 2 A 279 ILE LYS LEU VAL LYS LYS LEU GLY ALA GLY GLN PHE GLY SEQRES 3 A 279 GLU VAL TRP MET GLY TYR TYR ASN ASN SER THR LYS VAL SEQRES 4 A 279 ALA VAL LYS THR LEU LYS PRO GLY THR MET SER VAL GLN SEQRES 5 A 279 ALA PHE LEU GLU GLU ALA ASN LEU MET LYS THR LEU GLN SEQRES 6 A 279 HIS ASP LYS LEU VAL ARG LEU TYR ALA VAL VAL THR LYS SEQRES 7 A 279 GLU GLU PRO ILE TYR ILE ILE THR GLU PHE MET ALA LYS SEQRES 8 A 279 GLY SER LEU LEU ASP PHE LEU LYS SER ASP GLU GLY GLY SEQRES 9 A 279 LYS VAL LEU LEU PRO LYS LEU ILE ASP PHE SER ALA GLN SEQRES 10 A 279 ILE ALA GLU GLY MET ALA TYR ILE GLU ARG LYS ASN TYR SEQRES 11 A 279 ILE HIS ARG ASP LEU ARG ALA ALA ASN VAL LEU VAL SER SEQRES 12 A 279 GLU SER LEU MET CYS LYS ILE ALA ASP PHE GLY LEU ALA SEQRES 13 A 279 ARG VAL ILE GLU ASP ASN GLU TYR THR ALA ARG GLU GLY SEQRES 14 A 279 ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU ALA ILE SEQRES 15 A 279 ASN PHE GLY CYS PHE THR ILE LYS SER ASN VAL TRP SER SEQRES 16 A 279 PHE GLY ILE LEU LEU TYR GLU ILE VAL THR TYR GLY LYS SEQRES 17 A 279 ILE PRO TYR PRO GLY ARG THR ASN ALA ASP VAL MET SER SEQRES 18 A 279 ALA LEU SER GLN GLY TYR ARG MET PRO ARG MET GLU ASN SEQRES 19 A 279 CYS PRO ASP GLU LEU TYR ASP ILE MET LYS MET CYS TRP SEQRES 20 A 279 LYS GLU LYS ALA GLU GLU ARG PRO THR PHE ASP TYR LEU SEQRES 21 A 279 GLN SER VAL LEU ASP ASP PHE TYR THR ALA THR GLU GLY SEQRES 22 A 279 GLN TYR GLN GLN GLN PRO HET ANP A 1 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 HOH *15(H2 O) HELIX 1 1 PRO A 243 GLU A 245 5 3 HELIX 2 2 SER A 283 LYS A 295 1 13 HELIX 3 3 LEU A 327 SER A 333 1 7 HELIX 4 4 GLU A 335 VAL A 339 5 5 HELIX 5 5 LEU A 340 LYS A 361 1 22 HELIX 6 6 ARG A 369 ALA A 371 5 3 HELIX 7 7 PRO A 406 THR A 410 5 5 HELIX 8 8 ALA A 411 GLY A 418 1 8 HELIX 9 9 THR A 421 THR A 438 1 18 HELIX 10 10 THR A 448 SER A 457 1 10 HELIX 11 11 PRO A 469 TRP A 480 1 12 HELIX 12 12 LYS A 483 ARG A 487 5 5 HELIX 13 13 THR A 489 ASP A 499 1 11 SHEET 1 A 5 ILE A 247 GLY A 254 0 SHEET 2 A 5 GLY A 259 TYR A 266 -1 O VAL A 261 N LEU A 253 SHEET 3 A 5 THR A 270 LEU A 277 -1 O THR A 276 N GLU A 260 SHEET 4 A 5 TYR A 316 GLU A 320 -1 O ILE A 317 N LYS A 275 SHEET 5 A 5 LEU A 305 VAL A 309 -1 N TYR A 306 O ILE A 318 SHEET 1 B 3 GLY A 325 SER A 326 0 SHEET 2 B 3 VAL A 373 VAL A 375 -1 O VAL A 375 N GLY A 325 SHEET 3 B 3 CYS A 381 ILE A 383 -1 O LYS A 382 N LEU A 374 SHEET 1 C 2 TYR A 363 ILE A 364 0 SHEET 2 C 2 ARG A 390 VAL A 391 -1 O ARG A 390 N ILE A 364 SITE 1 AC1 6 LEU A 253 ALA A 273 GLU A 320 MET A 322 SITE 2 AC1 6 LEU A 374 ASP A 385 CRYST1 127.239 127.239 54.875 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007859 0.004538 0.000000 0.00000 SCALE2 0.000000 0.009075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018223 0.00000