data_2A9U # _entry.id 2A9U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2A9U RCSB RCSB033665 WWPDB D_1000033665 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2A9U _pdbx_database_status.recvd_initial_deposition_date 2005-07-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Walker, J.R.' 1 'Avvakumov, G.V.' 2 'Xue, S.' 3 'Newman, E.M.' 4 'Mackenzie, F.' 5 'Weigelt, J.' 6 'Sundstrom, M.' 7 'Arrowsmith, C.' 8 'Edwards, E.' 9 'Bochkarev, A.' 10 'Dhe-Paganon, S.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title ;Amino-terminal Dimerization, NRDP1-Rhodanese Interaction, and Inhibited Catalytic Domain Conformation of the Ubiquitin-specific Protease 8 (USP8). ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 38061 _citation.page_last 38070 _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17035239 _citation.pdbx_database_id_DOI 10.1074/jbc.M606704200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Avvakumov, G.V.' 1 primary 'Walker, J.R.' 2 primary 'Xue, S.' 3 primary 'Finerty Jr., P.J.' 4 primary 'Mackenzie, F.' 5 primary 'Newman, E.M.' 6 primary 'Dhe-Paganon, S.' 7 # _cell.entry_id 2A9U _cell.length_a 34.682 _cell.length_b 64.820 _cell.length_c 151.895 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A9U _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin carboxyl-terminal hydrolase 8' 17026.145 2 3.1.2.15 ? 'N-terminal domain, residues 1-142' ? 2 water nat water 18.015 88 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ubiquitin thiolesterase 8, Ubiquitin-specific processing protease 8, Deubiquitinating enzyme 8, hUBPy, USP8' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GS(MSE)PAVASVPKELYLSSSLKDLNKKTEVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLY(MSE)KYVTVY NLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQETG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMPAVASVPKELYLSSSLKDLNKKTEVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPD FKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQETG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MSE n 1 4 PRO n 1 5 ALA n 1 6 VAL n 1 7 ALA n 1 8 SER n 1 9 VAL n 1 10 PRO n 1 11 LYS n 1 12 GLU n 1 13 LEU n 1 14 TYR n 1 15 LEU n 1 16 SER n 1 17 SER n 1 18 SER n 1 19 LEU n 1 20 LYS n 1 21 ASP n 1 22 LEU n 1 23 ASN n 1 24 LYS n 1 25 LYS n 1 26 THR n 1 27 GLU n 1 28 VAL n 1 29 LYS n 1 30 PRO n 1 31 GLU n 1 32 LYS n 1 33 ILE n 1 34 SER n 1 35 THR n 1 36 LYS n 1 37 SER n 1 38 TYR n 1 39 VAL n 1 40 HIS n 1 41 SER n 1 42 ALA n 1 43 LEU n 1 44 LYS n 1 45 ILE n 1 46 PHE n 1 47 LYS n 1 48 THR n 1 49 ALA n 1 50 GLU n 1 51 GLU n 1 52 CYS n 1 53 ARG n 1 54 LEU n 1 55 ASP n 1 56 ARG n 1 57 ASP n 1 58 GLU n 1 59 GLU n 1 60 ARG n 1 61 ALA n 1 62 TYR n 1 63 VAL n 1 64 LEU n 1 65 TYR n 1 66 MSE n 1 67 LYS n 1 68 TYR n 1 69 VAL n 1 70 THR n 1 71 VAL n 1 72 TYR n 1 73 ASN n 1 74 LEU n 1 75 ILE n 1 76 LYS n 1 77 LYS n 1 78 ARG n 1 79 PRO n 1 80 ASP n 1 81 PHE n 1 82 LYS n 1 83 GLN n 1 84 GLN n 1 85 GLN n 1 86 ASP n 1 87 TYR n 1 88 PHE n 1 89 HIS n 1 90 SER n 1 91 ILE n 1 92 LEU n 1 93 GLY n 1 94 PRO n 1 95 GLY n 1 96 ASN n 1 97 ILE n 1 98 LYS n 1 99 LYS n 1 100 ALA n 1 101 VAL n 1 102 GLU n 1 103 GLU n 1 104 ALA n 1 105 GLU n 1 106 ARG n 1 107 LEU n 1 108 SER n 1 109 GLU n 1 110 SER n 1 111 LEU n 1 112 LYS n 1 113 LEU n 1 114 ARG n 1 115 TYR n 1 116 GLU n 1 117 GLU n 1 118 ALA n 1 119 GLU n 1 120 VAL n 1 121 ARG n 1 122 LYS n 1 123 LYS n 1 124 LEU n 1 125 GLU n 1 126 GLU n 1 127 LYS n 1 128 ASP n 1 129 ARG n 1 130 GLN n 1 131 GLU n 1 132 GLU n 1 133 ALA n 1 134 GLN n 1 135 ARG n 1 136 LEU n 1 137 GLN n 1 138 GLN n 1 139 LYS n 1 140 ARG n 1 141 GLN n 1 142 GLU n 1 143 THR n 1 144 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'USP8, KIAA0055, UBPY' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-LIC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBP8_HUMAN _struct_ref.pdbx_db_accession P40818 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPAVASVPKELYLSSSLKDLNKKTEVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFK QQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQETG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2A9U A 3 ? 144 ? P40818 1 ? 142 ? 1 142 2 1 2A9U B 3 ? 144 ? P40818 1 ? 142 ? 1 142 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2A9U GLY A 1 ? UNP P40818 ? ? 'CLONING ARTIFACT' -1 1 1 2A9U SER A 2 ? UNP P40818 ? ? 'CLONING ARTIFACT' 0 2 1 2A9U MSE A 3 ? UNP P40818 MET 1 'MODIFIED RESIDUE' 1 3 1 2A9U MSE A 66 ? UNP P40818 MET 64 'MODIFIED RESIDUE' 64 4 2 2A9U GLY B 1 ? UNP P40818 ? ? 'CLONING ARTIFACT' -1 5 2 2A9U SER B 2 ? UNP P40818 ? ? 'CLONING ARTIFACT' 0 6 2 2A9U MSE B 3 ? UNP P40818 MET 1 'MODIFIED RESIDUE' 1 7 2 2A9U MSE B 66 ? UNP P40818 MET 64 'MODIFIED RESIDUE' 64 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2A9U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 53.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '27% PEG3350, 0.2 M Li2SO4, 0.1 M bisTris, pH 5.6, 1 mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 298 K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2005-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97883 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97883 # _reflns.entry_id 2A9U _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.10 _reflns.d_resolution_low 33.81 _reflns.number_all 18987 _reflns.number_obs 18987 _reflns.percent_possible_obs 90.5 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 80.2 _reflns_shell.Rmerge_I_obs 0.444 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.15 _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 16 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2A9U _refine.ls_number_reflns_obs 17952 _refine.ls_number_reflns_all 18934 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.81 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 90.56 _refine.ls_R_factor_obs 0.21091 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20829 _refine.ls_R_factor_R_free 0.25943 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 976 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.893 _refine.B_iso_mean 31.080 _refine.aniso_B[1][1] 1.21 _refine.aniso_B[2][2] -0.89 _refine.aniso_B[3][3] -0.33 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.233 _refine.pdbx_overall_ESU_R_Free 0.204 _refine.overall_SU_ML 0.153 _refine.overall_SU_B 11.565 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2186 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 2274 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 33.81 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 2218 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.342 1.996 ? 2962 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.600 5.000 ? 259 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.527 24.414 ? 111 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.298 15.000 ? 478 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.382 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 318 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1620 'X-RAY DIFFRACTION' ? r_nbd_refined 0.223 0.200 ? 982 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.298 0.200 ? 1544 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.145 0.200 ? 103 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.231 0.200 ? 55 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.140 0.200 ? 5 'X-RAY DIFFRACTION' ? r_mcbond_it 2.211 3.000 ? 1359 'X-RAY DIFFRACTION' ? r_mcangle_it 3.239 4.000 ? 2114 'X-RAY DIFFRACTION' ? r_scbond_it 4.841 5.000 ? 972 'X-RAY DIFFRACTION' ? r_scangle_it 7.389 7.000 ? 848 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.151 _refine_ls_shell.number_reflns_R_work 1125 _refine_ls_shell.R_factor_R_work 0.243 _refine_ls_shell.percent_reflns_obs 79.14 _refine_ls_shell.R_factor_R_free 0.333 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 2A9U _struct.title 'Structure of the N-terminal domain of Human Ubiquitin carboxyl-terminal hydrolase 8 (USP8)' _struct.pdbx_descriptor 'Ubiquitin carboxyl-terminal hydrolase 8 (E.C.3.1.2.15)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2A9U _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;coil-coil, Hydrolase, Protease, SH3-binding, Thiol protease, Ubl conjugation pathway, Structural Genomics, Structural Genomics Consortium, SGC ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological unit is a homodimer.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 18 ? LYS A 24 ? SER A 16 LYS A 22 1 ? 7 HELX_P HELX_P2 2 LYS A 25 ? GLU A 27 ? LYS A 23 GLU A 25 5 ? 3 HELX_P HELX_P3 3 LYS A 29 ? ILE A 33 ? LYS A 27 ILE A 31 5 ? 5 HELX_P HELX_P4 4 SER A 34 ? ASP A 55 ? SER A 32 ASP A 53 1 ? 22 HELX_P HELX_P5 5 ASP A 57 ? LYS A 76 ? ASP A 55 LYS A 74 1 ? 20 HELX_P HELX_P6 6 ARG A 78 ? GLN A 84 ? ARG A 76 GLN A 82 1 ? 7 HELX_P HELX_P7 7 GLN A 84 ? GLY A 93 ? GLN A 82 GLY A 91 1 ? 10 HELX_P HELX_P8 8 GLY A 93 ? GLN A 141 ? GLY A 91 GLN A 139 1 ? 49 HELX_P HELX_P9 9 SER B 18 ? LYS B 25 ? SER B 16 LYS B 23 1 ? 8 HELX_P HELX_P10 10 LYS B 29 ? ILE B 33 ? LYS B 27 ILE B 31 5 ? 5 HELX_P HELX_P11 11 SER B 34 ? ASP B 55 ? SER B 32 ASP B 53 1 ? 22 HELX_P HELX_P12 12 ASP B 57 ? LYS B 76 ? ASP B 55 LYS B 74 1 ? 20 HELX_P HELX_P13 13 ARG B 78 ? GLN B 83 ? ARG B 76 GLN B 81 1 ? 6 HELX_P HELX_P14 14 GLN B 84 ? GLY B 93 ? GLN B 82 GLY B 91 1 ? 10 HELX_P HELX_P15 15 GLY B 93 ? ALA B 133 ? GLY B 91 ALA B 131 1 ? 41 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A TYR 65 C ? ? ? 1_555 A MSE 66 N ? ? A TYR 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 66 C ? ? ? 1_555 A LYS 67 N ? ? A MSE 64 A LYS 65 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? B TYR 65 C ? ? ? 1_555 B MSE 66 N ? ? B TYR 63 B MSE 64 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? B MSE 66 C ? ? ? 1_555 B LYS 67 N ? ? B MSE 64 B LYS 65 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2A9U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2A9U _atom_sites.fract_transf_matrix[1][1] 0.028833 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015427 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006583 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 MSE 3 1 ? ? ? A . n A 1 4 PRO 4 2 ? ? ? A . n A 1 5 ALA 5 3 ? ? ? A . n A 1 6 VAL 6 4 ? ? ? A . n A 1 7 ALA 7 5 ? ? ? A . n A 1 8 SER 8 6 6 SER SER A . n A 1 9 VAL 9 7 7 VAL VAL A . n A 1 10 PRO 10 8 8 PRO PRO A . n A 1 11 LYS 11 9 9 LYS LYS A . n A 1 12 GLU 12 10 10 GLU GLU A . n A 1 13 LEU 13 11 11 LEU LEU A . n A 1 14 TYR 14 12 12 TYR TYR A . n A 1 15 LEU 15 13 13 LEU LEU A . n A 1 16 SER 16 14 14 SER SER A . n A 1 17 SER 17 15 15 SER SER A . n A 1 18 SER 18 16 16 SER SER A . n A 1 19 LEU 19 17 17 LEU LEU A . n A 1 20 LYS 20 18 18 LYS LYS A . n A 1 21 ASP 21 19 19 ASP ASP A . n A 1 22 LEU 22 20 20 LEU LEU A . n A 1 23 ASN 23 21 21 ASN ASN A . n A 1 24 LYS 24 22 22 LYS LYS A . n A 1 25 LYS 25 23 23 LYS LYS A . n A 1 26 THR 26 24 24 THR THR A . n A 1 27 GLU 27 25 25 GLU GLU A . n A 1 28 VAL 28 26 26 VAL VAL A . n A 1 29 LYS 29 27 27 LYS LYS A . n A 1 30 PRO 30 28 28 PRO PRO A . n A 1 31 GLU 31 29 29 GLU GLU A . n A 1 32 LYS 32 30 30 LYS LYS A . n A 1 33 ILE 33 31 31 ILE ILE A . n A 1 34 SER 34 32 32 SER SER A . n A 1 35 THR 35 33 33 THR THR A . n A 1 36 LYS 36 34 34 LYS LYS A . n A 1 37 SER 37 35 35 SER SER A . n A 1 38 TYR 38 36 36 TYR TYR A . n A 1 39 VAL 39 37 37 VAL VAL A . n A 1 40 HIS 40 38 38 HIS HIS A . n A 1 41 SER 41 39 39 SER SER A . n A 1 42 ALA 42 40 40 ALA ALA A . n A 1 43 LEU 43 41 41 LEU LEU A . n A 1 44 LYS 44 42 42 LYS LYS A . n A 1 45 ILE 45 43 43 ILE ILE A . n A 1 46 PHE 46 44 44 PHE PHE A . n A 1 47 LYS 47 45 45 LYS LYS A . n A 1 48 THR 48 46 46 THR THR A . n A 1 49 ALA 49 47 47 ALA ALA A . n A 1 50 GLU 50 48 48 GLU GLU A . n A 1 51 GLU 51 49 49 GLU GLU A . n A 1 52 CYS 52 50 50 CYS CYS A . n A 1 53 ARG 53 51 51 ARG ARG A . n A 1 54 LEU 54 52 52 LEU LEU A . n A 1 55 ASP 55 53 53 ASP ASP A . n A 1 56 ARG 56 54 54 ARG ARG A . n A 1 57 ASP 57 55 55 ASP ASP A . n A 1 58 GLU 58 56 56 GLU GLU A . n A 1 59 GLU 59 57 57 GLU GLU A . n A 1 60 ARG 60 58 58 ARG ARG A . n A 1 61 ALA 61 59 59 ALA ALA A . n A 1 62 TYR 62 60 60 TYR TYR A . n A 1 63 VAL 63 61 61 VAL VAL A . n A 1 64 LEU 64 62 62 LEU LEU A . n A 1 65 TYR 65 63 63 TYR TYR A . n A 1 66 MSE 66 64 64 MSE MSE A . n A 1 67 LYS 67 65 65 LYS LYS A . n A 1 68 TYR 68 66 66 TYR TYR A . n A 1 69 VAL 69 67 67 VAL VAL A . n A 1 70 THR 70 68 68 THR THR A . n A 1 71 VAL 71 69 69 VAL VAL A . n A 1 72 TYR 72 70 70 TYR TYR A . n A 1 73 ASN 73 71 71 ASN ASN A . n A 1 74 LEU 74 72 72 LEU LEU A . n A 1 75 ILE 75 73 73 ILE ILE A . n A 1 76 LYS 76 74 74 LYS LYS A . n A 1 77 LYS 77 75 75 LYS LYS A . n A 1 78 ARG 78 76 76 ARG ARG A . n A 1 79 PRO 79 77 77 PRO PRO A . n A 1 80 ASP 80 78 78 ASP ASP A . n A 1 81 PHE 81 79 79 PHE PHE A . n A 1 82 LYS 82 80 80 LYS LYS A . n A 1 83 GLN 83 81 81 GLN GLN A . n A 1 84 GLN 84 82 82 GLN GLN A . n A 1 85 GLN 85 83 83 GLN GLN A . n A 1 86 ASP 86 84 84 ASP ASP A . n A 1 87 TYR 87 85 85 TYR TYR A . n A 1 88 PHE 88 86 86 PHE PHE A . n A 1 89 HIS 89 87 87 HIS HIS A . n A 1 90 SER 90 88 88 SER SER A . n A 1 91 ILE 91 89 89 ILE ILE A . n A 1 92 LEU 92 90 90 LEU LEU A . n A 1 93 GLY 93 91 91 GLY GLY A . n A 1 94 PRO 94 92 92 PRO PRO A . n A 1 95 GLY 95 93 93 GLY GLY A . n A 1 96 ASN 96 94 94 ASN ASN A . n A 1 97 ILE 97 95 95 ILE ILE A . n A 1 98 LYS 98 96 96 LYS LYS A . n A 1 99 LYS 99 97 97 LYS LYS A . n A 1 100 ALA 100 98 98 ALA ALA A . n A 1 101 VAL 101 99 99 VAL VAL A . n A 1 102 GLU 102 100 100 GLU GLU A . n A 1 103 GLU 103 101 101 GLU GLU A . n A 1 104 ALA 104 102 102 ALA ALA A . n A 1 105 GLU 105 103 103 GLU GLU A . n A 1 106 ARG 106 104 104 ARG ARG A . n A 1 107 LEU 107 105 105 LEU LEU A . n A 1 108 SER 108 106 106 SER SER A . n A 1 109 GLU 109 107 107 GLU GLU A . n A 1 110 SER 110 108 108 SER SER A . n A 1 111 LEU 111 109 109 LEU LEU A . n A 1 112 LYS 112 110 110 LYS LYS A . n A 1 113 LEU 113 111 111 LEU LEU A . n A 1 114 ARG 114 112 112 ARG ARG A . n A 1 115 TYR 115 113 113 TYR TYR A . n A 1 116 GLU 116 114 114 GLU GLU A . n A 1 117 GLU 117 115 115 GLU GLU A . n A 1 118 ALA 118 116 116 ALA ALA A . n A 1 119 GLU 119 117 117 GLU GLU A . n A 1 120 VAL 120 118 118 VAL VAL A . n A 1 121 ARG 121 119 119 ARG ARG A . n A 1 122 LYS 122 120 120 LYS LYS A . n A 1 123 LYS 123 121 121 LYS LYS A . n A 1 124 LEU 124 122 122 LEU LEU A . n A 1 125 GLU 125 123 123 GLU GLU A . n A 1 126 GLU 126 124 124 GLU GLU A . n A 1 127 LYS 127 125 125 LYS LYS A . n A 1 128 ASP 128 126 126 ASP ASP A . n A 1 129 ARG 129 127 127 ARG ARG A . n A 1 130 GLN 130 128 128 GLN GLN A . n A 1 131 GLU 131 129 129 GLU GLU A . n A 1 132 GLU 132 130 130 GLU GLU A . n A 1 133 ALA 133 131 131 ALA ALA A . n A 1 134 GLN 134 132 132 GLN GLN A . n A 1 135 ARG 135 133 133 ARG ARG A . n A 1 136 LEU 136 134 134 LEU LEU A . n A 1 137 GLN 137 135 135 GLN GLN A . n A 1 138 GLN 138 136 136 GLN GLN A . n A 1 139 LYS 139 137 137 LYS LYS A . n A 1 140 ARG 140 138 138 ARG ARG A . n A 1 141 GLN 141 139 139 GLN GLN A . n A 1 142 GLU 142 140 ? ? ? A . n A 1 143 THR 143 141 ? ? ? A . n A 1 144 GLY 144 142 ? ? ? A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 SER 2 0 ? ? ? B . n B 1 3 MSE 3 1 ? ? ? B . n B 1 4 PRO 4 2 ? ? ? B . n B 1 5 ALA 5 3 ? ? ? B . n B 1 6 VAL 6 4 ? ? ? B . n B 1 7 ALA 7 5 ? ? ? B . n B 1 8 SER 8 6 6 SER SER B . n B 1 9 VAL 9 7 7 VAL VAL B . n B 1 10 PRO 10 8 8 PRO PRO B . n B 1 11 LYS 11 9 9 LYS LYS B . n B 1 12 GLU 12 10 10 GLU GLU B . n B 1 13 LEU 13 11 11 LEU LEU B . n B 1 14 TYR 14 12 12 TYR TYR B . n B 1 15 LEU 15 13 13 LEU LEU B . n B 1 16 SER 16 14 14 SER SER B . n B 1 17 SER 17 15 15 SER SER B . n B 1 18 SER 18 16 16 SER SER B . n B 1 19 LEU 19 17 17 LEU LEU B . n B 1 20 LYS 20 18 18 LYS LYS B . n B 1 21 ASP 21 19 19 ASP ASP B . n B 1 22 LEU 22 20 20 LEU LEU B . n B 1 23 ASN 23 21 21 ASN ASN B . n B 1 24 LYS 24 22 22 LYS LYS B . n B 1 25 LYS 25 23 23 LYS LYS B . n B 1 26 THR 26 24 24 THR THR B . n B 1 27 GLU 27 25 25 GLU GLU B . n B 1 28 VAL 28 26 26 VAL VAL B . n B 1 29 LYS 29 27 27 LYS LYS B . n B 1 30 PRO 30 28 28 PRO PRO B . n B 1 31 GLU 31 29 29 GLU GLU B . n B 1 32 LYS 32 30 30 LYS LYS B . n B 1 33 ILE 33 31 31 ILE ILE B . n B 1 34 SER 34 32 32 SER SER B . n B 1 35 THR 35 33 33 THR THR B . n B 1 36 LYS 36 34 34 LYS LYS B . n B 1 37 SER 37 35 35 SER SER B . n B 1 38 TYR 38 36 36 TYR TYR B . n B 1 39 VAL 39 37 37 VAL VAL B . n B 1 40 HIS 40 38 38 HIS HIS B . n B 1 41 SER 41 39 39 SER SER B . n B 1 42 ALA 42 40 40 ALA ALA B . n B 1 43 LEU 43 41 41 LEU LEU B . n B 1 44 LYS 44 42 42 LYS LYS B . n B 1 45 ILE 45 43 43 ILE ILE B . n B 1 46 PHE 46 44 44 PHE PHE B . n B 1 47 LYS 47 45 45 LYS LYS B . n B 1 48 THR 48 46 46 THR THR B . n B 1 49 ALA 49 47 47 ALA ALA B . n B 1 50 GLU 50 48 48 GLU GLU B . n B 1 51 GLU 51 49 49 GLU GLU B . n B 1 52 CYS 52 50 50 CYS CYS B . n B 1 53 ARG 53 51 51 ARG ARG B . n B 1 54 LEU 54 52 52 LEU LEU B . n B 1 55 ASP 55 53 53 ASP ASP B . n B 1 56 ARG 56 54 54 ARG ARG B . n B 1 57 ASP 57 55 55 ASP ASP B . n B 1 58 GLU 58 56 56 GLU GLU B . n B 1 59 GLU 59 57 57 GLU GLU B . n B 1 60 ARG 60 58 58 ARG ARG B . n B 1 61 ALA 61 59 59 ALA ALA B . n B 1 62 TYR 62 60 60 TYR TYR B . n B 1 63 VAL 63 61 61 VAL VAL B . n B 1 64 LEU 64 62 62 LEU LEU B . n B 1 65 TYR 65 63 63 TYR TYR B . n B 1 66 MSE 66 64 64 MSE MSE B . n B 1 67 LYS 67 65 65 LYS LYS B . n B 1 68 TYR 68 66 66 TYR TYR B . n B 1 69 VAL 69 67 67 VAL VAL B . n B 1 70 THR 70 68 68 THR THR B . n B 1 71 VAL 71 69 69 VAL VAL B . n B 1 72 TYR 72 70 70 TYR TYR B . n B 1 73 ASN 73 71 71 ASN ASN B . n B 1 74 LEU 74 72 72 LEU LEU B . n B 1 75 ILE 75 73 73 ILE ILE B . n B 1 76 LYS 76 74 74 LYS LYS B . n B 1 77 LYS 77 75 75 LYS LYS B . n B 1 78 ARG 78 76 76 ARG ARG B . n B 1 79 PRO 79 77 77 PRO PRO B . n B 1 80 ASP 80 78 78 ASP ASP B . n B 1 81 PHE 81 79 79 PHE PHE B . n B 1 82 LYS 82 80 80 LYS LYS B . n B 1 83 GLN 83 81 81 GLN GLN B . n B 1 84 GLN 84 82 82 GLN GLN B . n B 1 85 GLN 85 83 83 GLN GLN B . n B 1 86 ASP 86 84 84 ASP ASP B . n B 1 87 TYR 87 85 85 TYR TYR B . n B 1 88 PHE 88 86 86 PHE PHE B . n B 1 89 HIS 89 87 87 HIS HIS B . n B 1 90 SER 90 88 88 SER SER B . n B 1 91 ILE 91 89 89 ILE ILE B . n B 1 92 LEU 92 90 90 LEU LEU B . n B 1 93 GLY 93 91 91 GLY GLY B . n B 1 94 PRO 94 92 92 PRO PRO B . n B 1 95 GLY 95 93 93 GLY GLY B . n B 1 96 ASN 96 94 94 ASN ASN B . n B 1 97 ILE 97 95 95 ILE ILE B . n B 1 98 LYS 98 96 96 LYS LYS B . n B 1 99 LYS 99 97 97 LYS LYS B . n B 1 100 ALA 100 98 98 ALA ALA B . n B 1 101 VAL 101 99 99 VAL VAL B . n B 1 102 GLU 102 100 100 GLU GLU B . n B 1 103 GLU 103 101 101 GLU GLU B . n B 1 104 ALA 104 102 102 ALA ALA B . n B 1 105 GLU 105 103 103 GLU GLU B . n B 1 106 ARG 106 104 104 ARG ARG B . n B 1 107 LEU 107 105 105 LEU LEU B . n B 1 108 SER 108 106 106 SER SER B . n B 1 109 GLU 109 107 107 GLU GLU B . n B 1 110 SER 110 108 108 SER SER B . n B 1 111 LEU 111 109 109 LEU LEU B . n B 1 112 LYS 112 110 110 LYS LYS B . n B 1 113 LEU 113 111 111 LEU LEU B . n B 1 114 ARG 114 112 112 ARG ARG B . n B 1 115 TYR 115 113 113 TYR TYR B . n B 1 116 GLU 116 114 114 GLU GLU B . n B 1 117 GLU 117 115 115 GLU GLU B . n B 1 118 ALA 118 116 116 ALA ALA B . n B 1 119 GLU 119 117 117 GLU GLU B . n B 1 120 VAL 120 118 118 VAL VAL B . n B 1 121 ARG 121 119 119 ARG ARG B . n B 1 122 LYS 122 120 120 LYS LYS B . n B 1 123 LYS 123 121 121 LYS LYS B . n B 1 124 LEU 124 122 122 LEU LEU B . n B 1 125 GLU 125 123 123 GLU GLU B . n B 1 126 GLU 126 124 124 GLU GLU B . n B 1 127 LYS 127 125 125 LYS LYS B . n B 1 128 ASP 128 126 126 ASP ASP B . n B 1 129 ARG 129 127 127 ARG ARG B . n B 1 130 GLN 130 128 128 GLN GLN B . n B 1 131 GLU 131 129 129 GLU GLU B . n B 1 132 GLU 132 130 130 GLU GLU B . n B 1 133 ALA 133 131 131 ALA ALA B . n B 1 134 GLN 134 132 132 GLN GLN B . n B 1 135 ARG 135 133 ? ? ? B . n B 1 136 LEU 136 134 ? ? ? B . n B 1 137 GLN 137 135 ? ? ? B . n B 1 138 GLN 138 136 ? ? ? B . n B 1 139 LYS 139 137 ? ? ? B . n B 1 140 ARG 140 138 ? ? ? B . n B 1 141 GLN 141 139 ? ? ? B . n B 1 142 GLU 142 140 ? ? ? B . n B 1 143 THR 143 141 ? ? ? B . n B 1 144 GLY 144 142 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 143 2 HOH HOH A . C 2 HOH 2 144 3 HOH HOH A . C 2 HOH 3 145 4 HOH HOH A . C 2 HOH 4 146 6 HOH HOH A . C 2 HOH 5 147 8 HOH HOH A . C 2 HOH 6 148 10 HOH HOH A . C 2 HOH 7 149 11 HOH HOH A . C 2 HOH 8 150 12 HOH HOH A . C 2 HOH 9 151 15 HOH HOH A . C 2 HOH 10 152 17 HOH HOH A . C 2 HOH 11 153 21 HOH HOH A . C 2 HOH 12 154 22 HOH HOH A . C 2 HOH 13 155 24 HOH HOH A . C 2 HOH 14 156 25 HOH HOH A . C 2 HOH 15 157 27 HOH HOH A . C 2 HOH 16 158 28 HOH HOH A . C 2 HOH 17 159 29 HOH HOH A . C 2 HOH 18 160 32 HOH HOH A . C 2 HOH 19 161 34 HOH HOH A . C 2 HOH 20 162 37 HOH HOH A . C 2 HOH 21 163 38 HOH HOH A . C 2 HOH 22 164 39 HOH HOH A . C 2 HOH 23 165 42 HOH HOH A . C 2 HOH 24 166 43 HOH HOH A . C 2 HOH 25 167 44 HOH HOH A . C 2 HOH 26 168 45 HOH HOH A . C 2 HOH 27 169 47 HOH HOH A . C 2 HOH 28 170 49 HOH HOH A . C 2 HOH 29 171 50 HOH HOH A . C 2 HOH 30 172 51 HOH HOH A . C 2 HOH 31 173 52 HOH HOH A . C 2 HOH 32 174 54 HOH HOH A . C 2 HOH 33 175 57 HOH HOH A . C 2 HOH 34 176 60 HOH HOH A . C 2 HOH 35 177 64 HOH HOH A . C 2 HOH 36 178 65 HOH HOH A . C 2 HOH 37 179 68 HOH HOH A . C 2 HOH 38 180 70 HOH HOH A . C 2 HOH 39 181 71 HOH HOH A . C 2 HOH 40 182 72 HOH HOH A . C 2 HOH 41 183 74 HOH HOH A . C 2 HOH 42 184 75 HOH HOH A . C 2 HOH 43 185 76 HOH HOH A . C 2 HOH 44 186 77 HOH HOH A . C 2 HOH 45 187 79 HOH HOH A . C 2 HOH 46 188 81 HOH HOH A . C 2 HOH 47 189 83 HOH HOH A . C 2 HOH 48 190 84 HOH HOH A . C 2 HOH 49 191 85 HOH HOH A . C 2 HOH 50 192 86 HOH HOH A . C 2 HOH 51 193 87 HOH HOH A . D 2 HOH 1 143 1 HOH HOH B . D 2 HOH 2 144 5 HOH HOH B . D 2 HOH 3 145 7 HOH HOH B . D 2 HOH 4 146 9 HOH HOH B . D 2 HOH 5 147 13 HOH HOH B . D 2 HOH 6 148 14 HOH HOH B . D 2 HOH 7 149 16 HOH HOH B . D 2 HOH 8 150 18 HOH HOH B . D 2 HOH 9 151 19 HOH HOH B . D 2 HOH 10 152 20 HOH HOH B . D 2 HOH 11 153 23 HOH HOH B . D 2 HOH 12 154 26 HOH HOH B . D 2 HOH 13 155 30 HOH HOH B . D 2 HOH 14 156 31 HOH HOH B . D 2 HOH 15 157 33 HOH HOH B . D 2 HOH 16 158 35 HOH HOH B . D 2 HOH 17 159 36 HOH HOH B . D 2 HOH 18 160 40 HOH HOH B . D 2 HOH 19 161 41 HOH HOH B . D 2 HOH 20 162 46 HOH HOH B . D 2 HOH 21 163 48 HOH HOH B . D 2 HOH 22 164 53 HOH HOH B . D 2 HOH 23 165 55 HOH HOH B . D 2 HOH 24 166 56 HOH HOH B . D 2 HOH 25 167 58 HOH HOH B . D 2 HOH 26 168 59 HOH HOH B . D 2 HOH 27 169 61 HOH HOH B . D 2 HOH 28 170 62 HOH HOH B . D 2 HOH 29 171 63 HOH HOH B . D 2 HOH 30 172 66 HOH HOH B . D 2 HOH 31 173 67 HOH HOH B . D 2 HOH 32 174 69 HOH HOH B . D 2 HOH 33 175 73 HOH HOH B . D 2 HOH 34 176 78 HOH HOH B . D 2 HOH 35 177 80 HOH HOH B . D 2 HOH 36 178 82 HOH HOH B . D 2 HOH 37 179 88 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 66 A MSE 64 ? MET SELENOMETHIONINE 2 B MSE 66 B MSE 64 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3680 ? 1 MORE -22 ? 1 'SSA (A^2)' 16920 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-16 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 12 ? ? -152.18 -25.61 2 1 TYR B 12 ? ? -149.70 -22.39 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A MSE 1 ? A MSE 3 4 1 Y 1 A PRO 2 ? A PRO 4 5 1 Y 1 A ALA 3 ? A ALA 5 6 1 Y 1 A VAL 4 ? A VAL 6 7 1 Y 1 A ALA 5 ? A ALA 7 8 1 Y 1 A GLU 140 ? A GLU 142 9 1 Y 1 A THR 141 ? A THR 143 10 1 Y 1 A GLY 142 ? A GLY 144 11 1 Y 1 B GLY -1 ? B GLY 1 12 1 Y 1 B SER 0 ? B SER 2 13 1 Y 1 B MSE 1 ? B MSE 3 14 1 Y 1 B PRO 2 ? B PRO 4 15 1 Y 1 B ALA 3 ? B ALA 5 16 1 Y 1 B VAL 4 ? B VAL 6 17 1 Y 1 B ALA 5 ? B ALA 7 18 1 Y 1 B ARG 133 ? B ARG 135 19 1 Y 1 B LEU 134 ? B LEU 136 20 1 Y 1 B GLN 135 ? B GLN 137 21 1 Y 1 B GLN 136 ? B GLN 138 22 1 Y 1 B LYS 137 ? B LYS 139 23 1 Y 1 B ARG 138 ? B ARG 140 24 1 Y 1 B GLN 139 ? B GLN 141 25 1 Y 1 B GLU 140 ? B GLU 142 26 1 Y 1 B THR 141 ? B THR 143 27 1 Y 1 B GLY 142 ? B GLY 144 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #