data_2BNK # _entry.id 2BNK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2BNK PDBE EBI-22789 WWPDB D_1290022789 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BNK _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-03-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Albert, A.' 1 'Asensio, J.L.' 2 'Munoz-Espin, D.' 3 'Gonzalez, C.' 4 'Hermoso, J.A.' 5 'Villar, L.' 6 'Jimenez-Barbero, J.' 7 'Salas, M.' 8 'Meijer, W.J.J.' 9 # _citation.id primary _citation.title 'Structure of the Functional Domain of {Varphi}29 Replication Organizer: Insights Into Oligomerization and DNA Binding.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 20730 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15772069 _citation.pdbx_database_id_DOI 10.1074/JBC.M501687200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Asensio, J.L.' 1 primary 'Albert, A.' 2 primary 'Munoz-Espin, D.' 3 primary 'Gonzalez, C.' 4 primary 'Hermoso, J.A.' 5 primary 'Villar, L.' 6 primary 'Jimenez-Barbero, J.' 7 primary 'Salas, M.' 8 primary 'Meijer, W.J.J.' 9 # _cell.entry_id 2BNK _cell.length_a 95.395 _cell.length_b 95.395 _cell.length_c 47.572 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BNK _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EARLY PROTEIN GP16.7' 7937.970 2 ? ? 'RESIDUES 64-130' 'DSDNA AND SSDNA BINDING PROTEIN' 2 water nat water 18.015 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KTVNLSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQKKLYRGSLK _entity_poly.pdbx_seq_one_letter_code_can KTVNLSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQKKLYRGSLK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 THR n 1 3 VAL n 1 4 ASN n 1 5 LEU n 1 6 SER n 1 7 ALA n 1 8 CYS n 1 9 GLU n 1 10 VAL n 1 11 ALA n 1 12 VAL n 1 13 LEU n 1 14 ASP n 1 15 LEU n 1 16 TYR n 1 17 GLU n 1 18 GLN n 1 19 SER n 1 20 ASN n 1 21 ILE n 1 22 ARG n 1 23 ILE n 1 24 PRO n 1 25 SER n 1 26 ASP n 1 27 ILE n 1 28 ILE n 1 29 GLU n 1 30 ASP n 1 31 LEU n 1 32 VAL n 1 33 ASN n 1 34 GLN n 1 35 ARG n 1 36 LEU n 1 37 GLN n 1 38 SER n 1 39 GLU n 1 40 GLN n 1 41 GLU n 1 42 VAL n 1 43 LEU n 1 44 ASN n 1 45 TYR n 1 46 ILE n 1 47 GLU n 1 48 THR n 1 49 GLN n 1 50 ARG n 1 51 THR n 1 52 TYR n 1 53 TRP n 1 54 LYS n 1 55 LEU n 1 56 GLU n 1 57 ASN n 1 58 GLN n 1 59 LYS n 1 60 LYS n 1 61 LEU n 1 62 TYR n 1 63 ARG n 1 64 GLY n 1 65 SER n 1 66 LEU n 1 67 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BACILLUS PHAGE PHI29' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10756 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VG167_BPPH2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P16517 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BNK A 1 ? 67 ? P16517 64 ? 130 ? 63 129 2 1 2BNK B 1 ? 67 ? P16517 64 ? 130 ? 63 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BNK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.94 _exptl_crystal.density_percent_sol 68.75 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM16' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM16 _diffrn_source.pdbx_wavelength 0.9 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BNK _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.900 _reflns.number_obs 5257 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.05000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.3000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.200 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 2.97 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.17000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.200 _reflns_shell.pdbx_redundancy 5.20 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BNK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5257 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 99.1 _refine.ls_R_factor_obs 0.271 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.270 _refine.ls_R_factor_R_free 0.289 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 281 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.914 _refine.correlation_coeff_Fo_to_Fc_free 0.878 _refine.B_iso_mean 61.47 _refine.aniso_B[1][1] 0.88000 _refine.aniso_B[2][2] 0.88000 _refine.aniso_B[3][3] -1.31000 _refine.aniso_B[1][2] 0.44000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.883 _refine.pdbx_overall_ESU_R_Free 0.390 _refine.overall_SU_ML 0.230 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.442 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1064 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 1091 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.021 ? 1076 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.636 1.965 ? 1456 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.745 5.000 ? 126 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.107 0.200 ? 168 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 804 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.263 0.200 ? 484 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.164 0.200 ? 44 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.246 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.145 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.731 1.500 ? 638 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.373 2.000 ? 1038 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.838 3.000 ? 438 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.124 4.500 ? 418 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 2.97 _refine_ls_shell.number_reflns_R_work 388 _refine_ls_shell.R_factor_R_work 0.2940 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3970 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 19 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -1.000000 _struct_ncs_oper.matrix[1][2] 0.002400 _struct_ncs_oper.matrix[1][3] -0.001900 _struct_ncs_oper.matrix[2][1] 0.002400 _struct_ncs_oper.matrix[2][2] 1.000000 _struct_ncs_oper.matrix[2][3] 0.000700 _struct_ncs_oper.matrix[3][1] 0.001900 _struct_ncs_oper.matrix[3][2] 0.000700 _struct_ncs_oper.matrix[3][3] -1.000000 _struct_ncs_oper.vector[1] 95.40270 _struct_ncs_oper.vector[2] -0.14580 _struct_ncs_oper.vector[3] 23.71410 # _struct.entry_id 2BNK _struct.title 'The structure of phage phi29 replication organizer protein p16.7' _struct.pdbx_descriptor 'EARLY PROTEIN GP16.7' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BNK _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'DNA-BINDING PROTEIN, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 8 ? SER A 19 ? CYS A 70 SER A 81 1 ? 12 HELX_P HELX_P2 2 PRO A 24 ? ASN A 33 ? PRO A 86 ASN A 95 1 ? 10 HELX_P HELX_P3 3 GLU A 39 ? ASN A 57 ? GLU A 101 ASN A 119 1 ? 19 HELX_P HELX_P4 4 CYS B 8 ? GLN B 18 ? CYS B 70 GLN B 80 1 ? 11 HELX_P HELX_P5 5 PRO B 24 ? ASN B 33 ? PRO B 86 ASN B 95 1 ? 10 HELX_P HELX_P6 6 GLU B 39 ? ASN B 57 ? GLU B 101 ASN B 119 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2BNK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BNK _atom_sites.fract_transf_matrix[1][1] 0.010483 _atom_sites.fract_transf_matrix[1][2] 0.006052 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012104 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021021 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 63 ? ? ? A . n A 1 2 THR 2 64 ? ? ? A . n A 1 3 VAL 3 65 65 VAL VAL A . n A 1 4 ASN 4 66 66 ASN ASN A . n A 1 5 LEU 5 67 67 LEU LEU A . n A 1 6 SER 6 68 68 SER SER A . n A 1 7 ALA 7 69 69 ALA ALA A . n A 1 8 CYS 8 70 70 CYS CYS A . n A 1 9 GLU 9 71 71 GLU GLU A . n A 1 10 VAL 10 72 72 VAL VAL A . n A 1 11 ALA 11 73 73 ALA ALA A . n A 1 12 VAL 12 74 74 VAL VAL A . n A 1 13 LEU 13 75 75 LEU LEU A . n A 1 14 ASP 14 76 76 ASP ASP A . n A 1 15 LEU 15 77 77 LEU LEU A . n A 1 16 TYR 16 78 78 TYR TYR A . n A 1 17 GLU 17 79 79 GLU GLU A . n A 1 18 GLN 18 80 80 GLN GLN A . n A 1 19 SER 19 81 81 SER SER A . n A 1 20 ASN 20 82 82 ASN ASN A . n A 1 21 ILE 21 83 83 ILE ILE A . n A 1 22 ARG 22 84 84 ARG ARG A . n A 1 23 ILE 23 85 85 ILE ILE A . n A 1 24 PRO 24 86 86 PRO PRO A . n A 1 25 SER 25 87 87 SER SER A . n A 1 26 ASP 26 88 88 ASP ASP A . n A 1 27 ILE 27 89 89 ILE ILE A . n A 1 28 ILE 28 90 90 ILE ILE A . n A 1 29 GLU 29 91 91 GLU GLU A . n A 1 30 ASP 30 92 92 ASP ASP A . n A 1 31 LEU 31 93 93 LEU LEU A . n A 1 32 VAL 32 94 94 VAL VAL A . n A 1 33 ASN 33 95 95 ASN ASN A . n A 1 34 GLN 34 96 96 GLN GLN A . n A 1 35 ARG 35 97 97 ARG ARG A . n A 1 36 LEU 36 98 98 LEU LEU A . n A 1 37 GLN 37 99 99 GLN GLN A . n A 1 38 SER 38 100 100 SER SER A . n A 1 39 GLU 39 101 101 GLU GLU A . n A 1 40 GLN 40 102 102 GLN GLN A . n A 1 41 GLU 41 103 103 GLU GLU A . n A 1 42 VAL 42 104 104 VAL VAL A . n A 1 43 LEU 43 105 105 LEU LEU A . n A 1 44 ASN 44 106 106 ASN ASN A . n A 1 45 TYR 45 107 107 TYR TYR A . n A 1 46 ILE 46 108 108 ILE ILE A . n A 1 47 GLU 47 109 109 GLU GLU A . n A 1 48 THR 48 110 110 THR THR A . n A 1 49 GLN 49 111 111 GLN GLN A . n A 1 50 ARG 50 112 112 ARG ARG A . n A 1 51 THR 51 113 113 THR THR A . n A 1 52 TYR 52 114 114 TYR TYR A . n A 1 53 TRP 53 115 115 TRP TRP A . n A 1 54 LYS 54 116 116 LYS LYS A . n A 1 55 LEU 55 117 117 LEU LEU A . n A 1 56 GLU 56 118 118 GLU GLU A . n A 1 57 ASN 57 119 119 ASN ASN A . n A 1 58 GLN 58 120 120 GLN GLN A . n A 1 59 LYS 59 121 121 LYS LYS A . n A 1 60 LYS 60 122 122 LYS LYS A . n A 1 61 LEU 61 123 123 LEU LEU A . n A 1 62 TYR 62 124 124 TYR TYR A . n A 1 63 ARG 63 125 125 ARG ARG A . n A 1 64 GLY 64 126 126 GLY GLY A . n A 1 65 SER 65 127 127 SER SER A . n A 1 66 LEU 66 128 128 LEU LEU A . n A 1 67 LYS 67 129 ? ? ? A . n B 1 1 LYS 1 63 ? ? ? B . n B 1 2 THR 2 64 ? ? ? B . n B 1 3 VAL 3 65 65 VAL VAL B . n B 1 4 ASN 4 66 66 ASN ASN B . n B 1 5 LEU 5 67 67 LEU LEU B . n B 1 6 SER 6 68 68 SER SER B . n B 1 7 ALA 7 69 69 ALA ALA B . n B 1 8 CYS 8 70 70 CYS CYS B . n B 1 9 GLU 9 71 71 GLU GLU B . n B 1 10 VAL 10 72 72 VAL VAL B . n B 1 11 ALA 11 73 73 ALA ALA B . n B 1 12 VAL 12 74 74 VAL VAL B . n B 1 13 LEU 13 75 75 LEU LEU B . n B 1 14 ASP 14 76 76 ASP ASP B . n B 1 15 LEU 15 77 77 LEU LEU B . n B 1 16 TYR 16 78 78 TYR TYR B . n B 1 17 GLU 17 79 79 GLU GLU B . n B 1 18 GLN 18 80 80 GLN GLN B . n B 1 19 SER 19 81 81 SER SER B . n B 1 20 ASN 20 82 82 ASN ASN B . n B 1 21 ILE 21 83 83 ILE ILE B . n B 1 22 ARG 22 84 84 ARG ARG B . n B 1 23 ILE 23 85 85 ILE ILE B . n B 1 24 PRO 24 86 86 PRO PRO B . n B 1 25 SER 25 87 87 SER SER B . n B 1 26 ASP 26 88 88 ASP ASP B . n B 1 27 ILE 27 89 89 ILE ILE B . n B 1 28 ILE 28 90 90 ILE ILE B . n B 1 29 GLU 29 91 91 GLU GLU B . n B 1 30 ASP 30 92 92 ASP ASP B . n B 1 31 LEU 31 93 93 LEU LEU B . n B 1 32 VAL 32 94 94 VAL VAL B . n B 1 33 ASN 33 95 95 ASN ASN B . n B 1 34 GLN 34 96 96 GLN GLN B . n B 1 35 ARG 35 97 97 ARG ARG B . n B 1 36 LEU 36 98 98 LEU LEU B . n B 1 37 GLN 37 99 99 GLN GLN B . n B 1 38 SER 38 100 100 SER SER B . n B 1 39 GLU 39 101 101 GLU GLU B . n B 1 40 GLN 40 102 102 GLN GLN B . n B 1 41 GLU 41 103 103 GLU GLU B . n B 1 42 VAL 42 104 104 VAL VAL B . n B 1 43 LEU 43 105 105 LEU LEU B . n B 1 44 ASN 44 106 106 ASN ASN B . n B 1 45 TYR 45 107 107 TYR TYR B . n B 1 46 ILE 46 108 108 ILE ILE B . n B 1 47 GLU 47 109 109 GLU GLU B . n B 1 48 THR 48 110 110 THR THR B . n B 1 49 GLN 49 111 111 GLN GLN B . n B 1 50 ARG 50 112 112 ARG ARG B . n B 1 51 THR 51 113 113 THR THR B . n B 1 52 TYR 52 114 114 TYR TYR B . n B 1 53 TRP 53 115 115 TRP TRP B . n B 1 54 LYS 54 116 116 LYS LYS B . n B 1 55 LEU 55 117 117 LEU LEU B . n B 1 56 GLU 56 118 118 GLU GLU B . n B 1 57 ASN 57 119 119 ASN ASN B . n B 1 58 GLN 58 120 120 GLN GLN B . n B 1 59 LYS 59 121 121 LYS LYS B . n B 1 60 LYS 60 122 122 LYS LYS B . n B 1 61 LEU 61 123 123 LEU LEU B . n B 1 62 TYR 62 124 124 TYR TYR B . n B 1 63 ARG 63 125 125 ARG ARG B . n B 1 64 GLY 64 126 126 GLY GLY B . n B 1 65 SER 65 127 127 SER SER B . n B 1 66 LEU 66 128 128 LEU LEU B . n B 1 67 LYS 67 129 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2001 2001 HOH HOH A . C 2 HOH 2 2002 2002 HOH HOH A . C 2 HOH 3 2003 2003 HOH HOH A . C 2 HOH 4 2004 2004 HOH HOH A . C 2 HOH 5 2005 2005 HOH HOH A . C 2 HOH 6 2006 2006 HOH HOH A . C 2 HOH 7 2007 2007 HOH HOH A . C 2 HOH 8 2008 2008 HOH HOH A . C 2 HOH 9 2009 2009 HOH HOH A . C 2 HOH 10 2010 2010 HOH HOH A . C 2 HOH 11 2011 2011 HOH HOH A . C 2 HOH 12 2012 2012 HOH HOH A . C 2 HOH 13 2013 2013 HOH HOH A . D 2 HOH 1 2001 2001 HOH HOH B . D 2 HOH 2 2002 2002 HOH HOH B . D 2 HOH 3 2003 2003 HOH HOH B . D 2 HOH 4 2004 2004 HOH HOH B . D 2 HOH 5 2005 2005 HOH HOH B . D 2 HOH 6 2006 2006 HOH HOH B . D 2 HOH 7 2007 2007 HOH HOH B . D 2 HOH 8 2008 2008 HOH HOH B . D 2 HOH 9 2009 2009 HOH HOH B . D 2 HOH 10 2010 2010 HOH HOH B . D 2 HOH 11 2011 2011 HOH HOH B . D 2 HOH 12 2012 2012 HOH HOH B . D 2 HOH 13 2013 2013 HOH HOH B . D 2 HOH 14 2014 2014 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-05 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 76 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 76 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 76 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.90 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.60 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 68 ? ? -67.73 -167.43 2 1 ASN A 82 ? ? 36.48 42.16 3 1 SER A 100 ? ? -110.36 -135.43 4 1 GLU A 101 ? ? -148.71 -45.70 5 1 SER A 127 ? ? -129.30 -97.86 6 1 SER B 68 ? ? -66.41 -169.45 7 1 ASN B 82 ? ? 36.63 41.44 8 1 SER B 100 ? ? -106.63 -140.63 9 1 GLU B 101 ? ? -139.63 -46.60 10 1 SER B 127 ? ? -131.84 -102.01 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 63 ? A LYS 1 2 1 Y 1 A THR 64 ? A THR 2 3 1 Y 1 A LYS 129 ? A LYS 67 4 1 Y 1 B LYS 63 ? B LYS 1 5 1 Y 1 B THR 64 ? B THR 2 6 1 Y 1 B LYS 129 ? B LYS 67 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #