data_2BOP # _entry.id 2BOP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2BOP pdb_00002bop 10.2210/pdb2bop/pdb RCSB PDV001 ? ? WWPDB D_1000177845 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-11-20 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_caveat 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' pdbx_validate_close_contact 4 4 'Structure model' struct_conn 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_struct_conn_angle 9 5 'Structure model' struct_conn 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 5 'Structure model' '_pdbx_struct_conn_angle.value' 24 5 'Structure model' '_struct_conn.pdbx_dist_value' 25 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_symmetry' 39 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'SER A 326 HAS WRONG CHIRALITY AT ATOM CA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BOP _pdbx_database_status.recvd_initial_deposition_date 1994-01-13 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hegde, R.S.' 1 'Grossman, S.R.' 2 'Laimins, L.A.' 3 'Sigler, P.B.' 4 # _citation.id primary _citation.title 'Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target.' _citation.journal_abbrev Nature _citation.journal_volume 359 _citation.page_first 505 _citation.page_last 512 _citation.year 1992 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1328886 _citation.pdbx_database_id_DOI 10.1038/359505a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hegde, R.S.' 1 ? primary 'Grossman, S.R.' 2 ? primary 'Laimins, L.A.' 3 ? primary 'Sigler, P.B.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*GP*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*TP*CP*G )-3') ; 5189.350 1 ? ? ? ? 2 polymer man 'PROTEIN (E2)' 9620.888 1 ? ? ? ? 3 non-polymer syn 'YTTERBIUM (III) ION' 173.040 2 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DA)(DC)(DC)(DG)(DA)(DC)(DG)(DT)(DC)(DG)(DG)(DT)(DC)(DG)' CCGACCGACGTCGGTCG B ? 2 'polypeptide(L)' no no ;SCFALISGTANQVKCYRFRVKKNHRHRYENCTTTWFTVADNGAERQGQAQILITFGSPSQRQDFLKHVPLPPGMNISGFT ASLDF ; ;SCFALISGTANQVKCYRFRVKKNHRHRYENCTTTWFTVADNGAERQGQAQILITFGSPSQRQDFLKHVPLPPGMNISGFT ASLDF ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'YTTERBIUM (III) ION' YB 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 DC n 1 7 DG n 1 8 DA n 1 9 DC n 1 10 DG n 1 11 DT n 1 12 DC n 1 13 DG n 1 14 DG n 1 15 DT n 1 16 DC n 1 17 DG n 2 1 SER n 2 2 CYS n 2 3 PHE n 2 4 ALA n 2 5 LEU n 2 6 ILE n 2 7 SER n 2 8 GLY n 2 9 THR n 2 10 ALA n 2 11 ASN n 2 12 GLN n 2 13 VAL n 2 14 LYS n 2 15 CYS n 2 16 TYR n 2 17 ARG n 2 18 PHE n 2 19 ARG n 2 20 VAL n 2 21 LYS n 2 22 LYS n 2 23 ASN n 2 24 HIS n 2 25 ARG n 2 26 HIS n 2 27 ARG n 2 28 TYR n 2 29 GLU n 2 30 ASN n 2 31 CYS n 2 32 THR n 2 33 THR n 2 34 THR n 2 35 TRP n 2 36 PHE n 2 37 THR n 2 38 VAL n 2 39 ALA n 2 40 ASP n 2 41 ASN n 2 42 GLY n 2 43 ALA n 2 44 GLU n 2 45 ARG n 2 46 GLN n 2 47 GLY n 2 48 GLN n 2 49 ALA n 2 50 GLN n 2 51 ILE n 2 52 LEU n 2 53 ILE n 2 54 THR n 2 55 PHE n 2 56 GLY n 2 57 SER n 2 58 PRO n 2 59 SER n 2 60 GLN n 2 61 ARG n 2 62 GLN n 2 63 ASP n 2 64 PHE n 2 65 LEU n 2 66 LYS n 2 67 HIS n 2 68 VAL n 2 69 PRO n 2 70 LEU n 2 71 PRO n 2 72 PRO n 2 73 GLY n 2 74 MET n 2 75 ASN n 2 76 ILE n 2 77 SER n 2 78 GLY n 2 79 PHE n 2 80 THR n 2 81 ALA n 2 82 SER n 2 83 LEU n 2 84 ASP n 2 85 PHE n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Deltapapillomavirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Bovine papillomavirus - 1' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bovine papillomavirus type 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YB non-polymer . 'YTTERBIUM (III) ION' ? 'Yb 3' 173.040 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C B . n A 1 2 DC 2 2 2 DC C B . n A 1 3 DG 3 3 3 DG G B . n A 1 4 DA 4 4 4 DA A B . n A 1 5 DC 5 5 5 DC C B . n A 1 6 DC 6 6 6 DC C B . n A 1 7 DG 7 7 7 DG G B . n A 1 8 DA 8 8 8 DA A B . n A 1 9 DC 9 9 9 DC C B . n A 1 10 DG 10 10 10 DG G B . n A 1 11 DT 11 11 11 DT T B . n A 1 12 DC 12 12 12 DC C B . n A 1 13 DG 13 13 13 DG G B . n A 1 14 DG 14 14 14 DG G B . n A 1 15 DT 15 15 15 DT T B . n A 1 16 DC 16 16 16 DC C B . n A 1 17 DG 17 17 17 DG G B . n B 2 1 SER 1 326 326 SER SER A . n B 2 2 CYS 2 327 327 CYS CYS A . n B 2 3 PHE 3 328 328 PHE PHE A . n B 2 4 ALA 4 329 329 ALA ALA A . n B 2 5 LEU 5 330 330 LEU LEU A . n B 2 6 ILE 6 331 331 ILE ILE A . n B 2 7 SER 7 332 332 SER SER A . n B 2 8 GLY 8 333 333 GLY GLY A . n B 2 9 THR 9 334 334 THR THR A . n B 2 10 ALA 10 335 335 ALA ALA A . n B 2 11 ASN 11 336 336 ASN ASN A . n B 2 12 GLN 12 337 337 GLN GLN A . n B 2 13 VAL 13 338 338 VAL VAL A . n B 2 14 LYS 14 339 339 LYS LYS A . n B 2 15 CYS 15 340 340 CYS CYS A . n B 2 16 TYR 16 341 341 TYR TYR A . n B 2 17 ARG 17 342 342 ARG ARG A . n B 2 18 PHE 18 343 343 PHE PHE A . n B 2 19 ARG 19 344 344 ARG ARG A . n B 2 20 VAL 20 345 345 VAL VAL A . n B 2 21 LYS 21 346 346 LYS LYS A . n B 2 22 LYS 22 347 347 LYS LYS A . n B 2 23 ASN 23 348 348 ASN ASN A . n B 2 24 HIS 24 349 349 HIS HIS A . n B 2 25 ARG 25 350 350 ARG ARG A . n B 2 26 HIS 26 351 351 HIS HIS A . n B 2 27 ARG 27 352 352 ARG ARG A . n B 2 28 TYR 28 353 353 TYR TYR A . n B 2 29 GLU 29 354 354 GLU GLU A . n B 2 30 ASN 30 355 355 ASN ASN A . n B 2 31 CYS 31 356 356 CYS CYS A . n B 2 32 THR 32 357 357 THR THR A . n B 2 33 THR 33 358 358 THR THR A . n B 2 34 THR 34 359 359 THR THR A . n B 2 35 TRP 35 360 360 TRP TRP A . n B 2 36 PHE 36 361 361 PHE PHE A . n B 2 37 THR 37 362 362 THR THR A . n B 2 38 VAL 38 363 363 VAL VAL A . n B 2 39 ALA 39 364 364 ALA ALA A . n B 2 40 ASP 40 365 365 ASP ASP A . n B 2 41 ASN 41 366 366 ASN ASN A . n B 2 42 GLY 42 367 367 GLY GLY A . n B 2 43 ALA 43 368 368 ALA ALA A . n B 2 44 GLU 44 369 369 GLU GLU A . n B 2 45 ARG 45 370 370 ARG ARG A . n B 2 46 GLN 46 371 371 GLN GLN A . n B 2 47 GLY 47 372 372 GLY GLY A . n B 2 48 GLN 48 373 373 GLN GLN A . n B 2 49 ALA 49 374 374 ALA ALA A . n B 2 50 GLN 50 375 375 GLN GLN A . n B 2 51 ILE 51 376 376 ILE ILE A . n B 2 52 LEU 52 377 377 LEU LEU A . n B 2 53 ILE 53 378 378 ILE ILE A . n B 2 54 THR 54 379 379 THR THR A . n B 2 55 PHE 55 380 380 PHE PHE A . n B 2 56 GLY 56 381 381 GLY GLY A . n B 2 57 SER 57 382 382 SER SER A . n B 2 58 PRO 58 383 383 PRO PRO A . n B 2 59 SER 59 384 384 SER SER A . n B 2 60 GLN 60 385 385 GLN GLN A . n B 2 61 ARG 61 386 386 ARG ARG A . n B 2 62 GLN 62 387 387 GLN GLN A . n B 2 63 ASP 63 388 388 ASP ASP A . n B 2 64 PHE 64 389 389 PHE PHE A . n B 2 65 LEU 65 390 390 LEU LEU A . n B 2 66 LYS 66 391 391 LYS LYS A . n B 2 67 HIS 67 392 392 HIS HIS A . n B 2 68 VAL 68 393 393 VAL VAL A . n B 2 69 PRO 69 394 394 PRO PRO A . n B 2 70 LEU 70 395 395 LEU LEU A . n B 2 71 PRO 71 396 396 PRO PRO A . n B 2 72 PRO 72 397 397 PRO PRO A . n B 2 73 GLY 73 398 398 GLY GLY A . n B 2 74 MET 74 399 399 MET MET A . n B 2 75 ASN 75 400 400 ASN ASN A . n B 2 76 ILE 76 401 401 ILE ILE A . n B 2 77 SER 77 402 402 SER SER A . n B 2 78 GLY 78 403 403 GLY GLY A . n B 2 79 PHE 79 404 404 PHE PHE A . n B 2 80 THR 80 405 405 THR THR A . n B 2 81 ALA 81 406 406 ALA ALA A . n B 2 82 SER 82 407 407 SER SER A . n B 2 83 LEU 83 408 408 LEU LEU A . n B 2 84 ASP 84 409 409 ASP ASP A . n B 2 85 PHE 85 410 410 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YB 1 500 500 YB YB B . D 3 YB 1 499 499 YB YB A . E 4 HOH 1 502 502 HOH HOH B . E 4 HOH 2 503 503 HOH HOH B . E 4 HOH 3 504 504 HOH HOH B . E 4 HOH 4 506 506 HOH HOH B . E 4 HOH 5 507 507 HOH HOH B . E 4 HOH 6 508 508 HOH HOH B . E 4 HOH 7 511 511 HOH HOH B . E 4 HOH 8 513 513 HOH HOH B . E 4 HOH 9 514 514 HOH HOH B . E 4 HOH 10 515 515 HOH HOH B . E 4 HOH 11 516 516 HOH HOH B . E 4 HOH 12 517 517 HOH HOH B . E 4 HOH 13 518 518 HOH HOH B . E 4 HOH 14 521 521 HOH HOH B . E 4 HOH 15 522 522 HOH HOH B . E 4 HOH 16 525 525 HOH HOH B . E 4 HOH 17 529 529 HOH HOH B . E 4 HOH 18 532 532 HOH HOH B . E 4 HOH 19 537 537 HOH HOH B . E 4 HOH 20 543 543 HOH HOH B . E 4 HOH 21 544 544 HOH HOH B . E 4 HOH 22 553 553 HOH HOH B . E 4 HOH 23 563 563 HOH HOH B . E 4 HOH 24 564 564 HOH HOH B . E 4 HOH 25 566 566 HOH HOH B . E 4 HOH 26 567 567 HOH HOH B . E 4 HOH 27 575 575 HOH HOH B . E 4 HOH 28 576 576 HOH HOH B . E 4 HOH 29 577 577 HOH HOH B . E 4 HOH 30 578 578 HOH HOH B . E 4 HOH 31 579 579 HOH HOH B . E 4 HOH 32 585 585 HOH HOH B . E 4 HOH 33 589 589 HOH HOH B . E 4 HOH 34 597 597 HOH HOH B . E 4 HOH 35 601 601 HOH HOH B . E 4 HOH 36 602 602 HOH HOH B . E 4 HOH 37 603 603 HOH HOH B . E 4 HOH 38 604 604 HOH HOH B . E 4 HOH 39 605 605 HOH HOH B . E 4 HOH 40 606 606 HOH HOH B . E 4 HOH 41 607 607 HOH HOH B . E 4 HOH 42 608 608 HOH HOH B . E 4 HOH 43 609 609 HOH HOH B . E 4 HOH 44 610 610 HOH HOH B . E 4 HOH 45 611 611 HOH HOH B . E 4 HOH 46 612 612 HOH HOH B . E 4 HOH 47 613 613 HOH HOH B . E 4 HOH 48 615 615 HOH HOH B . E 4 HOH 49 617 617 HOH HOH B . E 4 HOH 50 618 618 HOH HOH B . E 4 HOH 51 620 620 HOH HOH B . E 4 HOH 52 621 621 HOH HOH B . F 4 HOH 1 501 501 HOH HOH A . F 4 HOH 2 505 505 HOH HOH A . F 4 HOH 3 509 509 HOH HOH A . F 4 HOH 4 510 510 HOH HOH A . F 4 HOH 5 512 512 HOH HOH A . F 4 HOH 6 519 519 HOH HOH A . F 4 HOH 7 520 520 HOH HOH A . F 4 HOH 8 523 523 HOH HOH A . F 4 HOH 9 524 524 HOH HOH A . F 4 HOH 10 526 526 HOH HOH A . F 4 HOH 11 527 527 HOH HOH A . F 4 HOH 12 528 528 HOH HOH A . F 4 HOH 13 530 530 HOH HOH A . F 4 HOH 14 531 531 HOH HOH A . F 4 HOH 15 533 533 HOH HOH A . F 4 HOH 16 534 534 HOH HOH A . F 4 HOH 17 535 535 HOH HOH A . F 4 HOH 18 536 536 HOH HOH A . F 4 HOH 19 538 538 HOH HOH A . F 4 HOH 20 539 539 HOH HOH A . F 4 HOH 21 540 540 HOH HOH A . F 4 HOH 22 541 541 HOH HOH A . F 4 HOH 23 542 542 HOH HOH A . F 4 HOH 24 545 545 HOH HOH A . F 4 HOH 25 546 546 HOH HOH A . F 4 HOH 26 547 547 HOH HOH A . F 4 HOH 27 548 548 HOH HOH A . F 4 HOH 28 549 549 HOH HOH A . F 4 HOH 29 550 550 HOH HOH A . F 4 HOH 30 551 551 HOH HOH A . F 4 HOH 31 552 552 HOH HOH A . F 4 HOH 32 554 554 HOH HOH A . F 4 HOH 33 555 555 HOH HOH A . F 4 HOH 34 556 556 HOH HOH A . F 4 HOH 35 557 557 HOH HOH A . F 4 HOH 36 558 558 HOH HOH A . F 4 HOH 37 559 559 HOH HOH A . F 4 HOH 38 560 560 HOH HOH A . F 4 HOH 39 561 561 HOH HOH A . F 4 HOH 40 562 562 HOH HOH A . F 4 HOH 41 565 565 HOH HOH A . F 4 HOH 42 568 568 HOH HOH A . F 4 HOH 43 569 569 HOH HOH A . F 4 HOH 44 570 570 HOH HOH A . F 4 HOH 45 571 571 HOH HOH A . F 4 HOH 46 572 572 HOH HOH A . F 4 HOH 47 573 573 HOH HOH A . F 4 HOH 48 574 574 HOH HOH A . F 4 HOH 49 580 580 HOH HOH A . F 4 HOH 50 581 581 HOH HOH A . F 4 HOH 51 582 582 HOH HOH A . F 4 HOH 52 583 583 HOH HOH A . F 4 HOH 53 584 584 HOH HOH A . F 4 HOH 54 586 586 HOH HOH A . F 4 HOH 55 587 587 HOH HOH A . F 4 HOH 56 588 588 HOH HOH A . F 4 HOH 57 590 590 HOH HOH A . F 4 HOH 58 591 591 HOH HOH A . F 4 HOH 59 592 592 HOH HOH A . F 4 HOH 60 593 593 HOH HOH A . F 4 HOH 61 594 594 HOH HOH A . F 4 HOH 62 595 595 HOH HOH A . F 4 HOH 63 596 596 HOH HOH A . F 4 HOH 64 598 598 HOH HOH A . F 4 HOH 65 599 599 HOH HOH A . F 4 HOH 66 600 600 HOH HOH A . F 4 HOH 67 614 614 HOH HOH A . F 4 HOH 68 616 616 HOH HOH A . F 4 HOH 69 619 619 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal NUCLSQ refinement . ? 1 PROFFT refinement . ? 2 # _cell.entry_id 2BOP _cell.length_a 64.600 _cell.length_b 64.600 _cell.length_c 64.600 _cell.angle_alpha 61.80 _cell.angle_beta 61.80 _cell.angle_gamma 61.80 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BOP _symmetry.space_group_name_H-M 'R 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.entry_id 2BOP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 43.98 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_details 'pH 7.50, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 3350' ? ? ? 1 3 1 BIS-TRIS-PROPANE_HCL ? ? ? 1 4 1 NACL ? ? ? 1 5 1 KCL ? ? ? 1 6 1 CACL2 ? ? ? 1 7 1 YBCL3 ? ? ? 1 8 2 WATER ? ? ? 1 9 2 'PEG 3350' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SDMS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2BOP _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.700 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2BOP _refine.ls_number_reflns_obs 22798 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.000 _refine.ls_d_res_high 1.700 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2007000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 677 _refine_hist.pdbx_number_atoms_nucleic_acid 344 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1144 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 6.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 2BOP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2BOP _struct.title 'CRYSTAL STRUCTURE AT 1.7 ANGSTROMS OF THE BOVINE PAPILLOMAVIRUS-1 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BOP _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP VE2_BPV1 2 ? ? P03122 ? 2 PDB 2BOP 1 ? ? 2BOP ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BOP A 1 ? 85 ? P03122 326 ? 410 ? 326 410 2 2 2BOP B 1 ? 17 ? 2BOP 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_776 -y+2,-x+2,-z+1 -0.4725507649 -0.8813034521 0.0000000000 220.7803382316 -0.8813034521 0.4725507649 0.0000000000 132.1343065880 0.0000000000 0.0000000000 -1.0000000000 53.9211134118 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 A1 THR B 9 ? HIS B 24 ? THR A 334 HIS A 349 1 ? 16 HELX_P HELX_P2 A2 SER B 57 ? VAL B 68 ? SER A 382 VAL A 393 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C YB . YB ? ? ? 1_555 E HOH . O ? ? B YB 500 B HOH 612 4_776 ? ? ? ? ? ? ? 2.669 ? ? metalc2 metalc ? ? C YB . YB ? ? ? 1_555 E HOH . O ? ? B YB 500 B HOH 613 4_776 ? ? ? ? ? ? ? 2.642 ? ? metalc3 metalc ? ? C YB . YB ? ? ? 1_555 E HOH . O ? ? B YB 500 B HOH 620 4_776 ? ? ? ? ? ? ? 2.673 ? ? metalc4 metalc ? ? B GLU 29 OE1 ? ? ? 1_555 D YB . YB ? ? A GLU 354 A YB 499 5_776 ? ? ? ? ? ? ? 2.451 ? ? metalc5 metalc ? ? B GLU 29 OE2 ? ? ? 1_555 D YB . YB ? ? A GLU 354 A YB 499 5_776 ? ? ? ? ? ? ? 2.277 ? ? metalc6 metalc ? ? B ASP 40 OD1 ? ? ? 1_555 D YB . YB ? ? A ASP 365 A YB 499 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc7 metalc ? ? B GLU 44 OE1 ? ? ? 1_555 D YB . YB ? ? A GLU 369 A YB 499 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc8 metalc ? ? B GLU 44 OE2 ? ? ? 1_555 D YB . YB ? ? A GLU 369 A YB 499 1_555 ? ? ? ? ? ? ? 2.308 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 17 N1 ? ? B DC 2 B DG 17 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 17 O6 ? ? B DC 2 B DG 17 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 17 N2 ? ? B DC 2 B DG 17 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 16 N3 ? ? B DG 3 B DC 16 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 16 O2 ? ? B DG 3 B DC 16 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 16 N4 ? ? B DG 3 B DC 16 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 15 N3 ? ? B DA 4 B DT 15 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 15 O4 ? ? B DA 4 B DT 15 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 14 N1 ? ? B DC 5 B DG 14 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 14 O6 ? ? B DC 5 B DG 14 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 14 N2 ? ? B DC 5 B DG 14 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 13 N1 ? ? B DC 6 B DG 13 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 13 O6 ? ? B DC 6 B DG 13 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 13 N2 ? ? B DC 6 B DG 13 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 12 N3 ? ? B DG 7 B DC 12 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 12 O2 ? ? B DG 7 B DC 12 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 12 N4 ? ? B DG 7 B DC 12 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N1 ? ? ? 1_555 A DT 11 N3 ? ? B DA 8 B DT 11 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N6 ? ? ? 1_555 A DT 11 O4 ? ? B DA 8 B DT 11 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 A DG 10 N1 ? ? B DC 9 B DG 10 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 A DG 10 O6 ? ? B DC 9 B DG 10 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 A DG 10 N2 ? ? B DC 9 B DG 10 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 9 N3 ? ? B DG 10 B DC 9 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DC 9 O2 ? ? B DG 10 B DC 9 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 9 N4 ? ? B DG 10 B DC 9 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 N3 ? ? ? 1_555 A DA 8 N1 ? ? B DT 11 B DA 8 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 O4 ? ? ? 1_555 A DA 8 N6 ? ? B DT 11 B DA 8 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 7 N1 ? ? B DC 12 B DG 7 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 7 O6 ? ? B DC 12 B DG 7 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 7 N2 ? ? B DC 12 B DG 7 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DC 6 N3 ? ? B DG 13 B DC 6 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DC 6 O2 ? ? B DG 13 B DC 6 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 13 O6 ? ? ? 1_555 A DC 6 N4 ? ? B DG 13 B DC 6 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DC 5 N3 ? ? B DG 14 B DC 5 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DC 5 O2 ? ? B DG 14 B DC 5 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 14 O6 ? ? ? 1_555 A DC 5 N4 ? ? B DG 14 B DC 5 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 15 N3 ? ? ? 1_555 A DA 4 N1 ? ? B DT 15 B DA 4 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 15 O4 ? ? ? 1_555 A DA 4 N6 ? ? B DT 15 B DA 4 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 3 N1 ? ? B DC 16 B DG 3 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 3 O6 ? ? B DC 16 B DG 3 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 3 N2 ? ? B DC 16 B DG 3 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DC 2 N3 ? ? B DG 17 B DC 2 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DC 2 O2 ? ? B DG 17 B DC 2 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 17 O6 ? ? ? 1_555 A DC 2 N4 ? ? B DG 17 B DC 2 4_776 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? B HOH 612 ? 4_776 YB ? C YB . ? B YB 500 ? 1_555 O ? E HOH . ? B HOH 613 ? 4_776 65.2 ? 2 O ? E HOH . ? B HOH 612 ? 4_776 YB ? C YB . ? B YB 500 ? 1_555 O ? E HOH . ? B HOH 620 ? 4_776 104.6 ? 3 O ? E HOH . ? B HOH 613 ? 4_776 YB ? C YB . ? B YB 500 ? 1_555 O ? E HOH . ? B HOH 620 ? 4_776 68.1 ? 4 OE1 ? B GLU 29 ? A GLU 354 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OE2 ? B GLU 29 ? A GLU 354 ? 1_555 54.4 ? 5 OE1 ? B GLU 29 ? A GLU 354 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OD1 ? B ASP 40 ? A ASP 365 ? 1_555 43.3 ? 6 OE2 ? B GLU 29 ? A GLU 354 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OD1 ? B ASP 40 ? A ASP 365 ? 1_555 26.4 ? 7 OE1 ? B GLU 29 ? A GLU 354 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OE1 ? B GLU 44 ? A GLU 369 ? 1_555 41.5 ? 8 OE2 ? B GLU 29 ? A GLU 354 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OE1 ? B GLU 44 ? A GLU 369 ? 1_555 24.0 ? 9 OD1 ? B ASP 40 ? A ASP 365 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OE1 ? B GLU 44 ? A GLU 369 ? 1_555 3.6 ? 10 OE1 ? B GLU 29 ? A GLU 354 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OE2 ? B GLU 44 ? A GLU 369 ? 1_555 39.3 ? 11 OE2 ? B GLU 29 ? A GLU 354 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OE2 ? B GLU 44 ? A GLU 369 ? 1_555 24.0 ? 12 OD1 ? B ASP 40 ? A ASP 365 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OE2 ? B GLU 44 ? A GLU 369 ? 1_555 5.7 ? 13 OE1 ? B GLU 44 ? A GLU 369 ? 1_555 YB ? D YB . ? A YB 499 ? 5_776 OE2 ? B GLU 44 ? A GLU 369 ? 1_555 2.4 ? # _struct_sheet.id B _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id B 1 TYR B 28 ? ASP B 40 ? TYR A 353 ASP A 365 B 2 GLU B 44 ? GLY B 56 ? GLU A 369 GLY A 381 B 3 SER B 1 ? THR B 9 ? SER A 326 THR A 334 B 4 MET B 74 ? PHE B 85 ? MET A 399 PHE A 410 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A YB 499 ? 4 'BINDING SITE FOR RESIDUE YB A 499' AC2 Software B YB 500 ? 3 'BINDING SITE FOR RESIDUE YB B 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU B 29 ? GLU A 354 . ? 5_767 ? 2 AC1 4 ASP B 40 ? ASP A 365 . ? 1_555 ? 3 AC1 4 ASN B 41 ? ASN A 366 . ? 1_555 ? 4 AC1 4 GLU B 44 ? GLU A 369 . ? 1_555 ? 5 AC2 3 HOH E . ? HOH B 612 . ? 4_776 ? 6 AC2 3 HOH E . ? HOH B 613 . ? 4_776 ? 7 AC2 3 HOH E . ? HOH B 620 . ? 4_776 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 B DC 9 ? ? O B HOH 621 ? ? 1.84 2 1 OD1 A ASN 400 ? ? O A HOH 545 ? ? 1.86 3 1 OD1 A ASN 366 ? ? YB A YB 499 ? ? 1.96 4 1 O A HOH 527 ? ? O A HOH 547 ? ? 1.97 5 1 ND1 A HIS 351 ? ? O A HOH 568 ? ? 2.00 6 1 O A HOH 528 ? ? O A HOH 550 ? ? 2.01 7 1 O A HOH 560 ? ? O A HOH 598 ? ? 2.04 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 569 ? ? 1_555 O A HOH 569 ? ? 4_776 1.65 2 1 O A HOH 540 ? ? 1_555 O A HOH 587 ? ? 4_776 2.07 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P B DC 2 ? ? OP2 B DC 2 ? ? 1.329 1.485 -0.156 0.017 N 2 1 "C3'" B DC 2 ? ? "C2'" B DC 2 ? ? 1.445 1.516 -0.071 0.008 N 3 1 "O4'" B DC 2 ? ? "C4'" B DC 2 ? ? 1.378 1.446 -0.068 0.010 N 4 1 "O3'" B DC 2 ? ? P B DG 3 ? ? 1.685 1.607 0.078 0.012 Y 5 1 P B DA 4 ? ? "O5'" B DA 4 ? ? 1.533 1.593 -0.060 0.010 N 6 1 P B DC 6 ? ? OP2 B DC 6 ? ? 1.330 1.485 -0.155 0.017 N 7 1 P B DG 7 ? ? OP1 B DG 7 ? ? 1.633 1.485 0.148 0.017 N 8 1 P B DA 8 ? ? OP2 B DA 8 ? ? 1.299 1.485 -0.186 0.017 N 9 1 P B DA 8 ? ? "O5'" B DA 8 ? ? 1.700 1.593 0.107 0.010 N 10 1 "O4'" B DA 8 ? ? "C4'" B DA 8 ? ? 1.384 1.446 -0.062 0.010 N 11 1 C6 B DA 8 ? ? N1 B DA 8 ? ? 1.397 1.351 0.046 0.007 N 12 1 P B DC 9 ? ? OP2 B DC 9 ? ? 1.355 1.485 -0.130 0.017 N 13 1 P B DC 9 ? ? "O5'" B DC 9 ? ? 1.826 1.593 0.233 0.010 N 14 1 "O4'" B DC 9 ? ? "C4'" B DC 9 ? ? 1.378 1.446 -0.068 0.010 N 15 1 "O3'" B DC 9 ? ? P B DG 10 ? ? 1.748 1.607 0.141 0.012 Y 16 1 P B DG 10 ? ? "O5'" B DG 10 ? ? 1.655 1.593 0.062 0.010 N 17 1 "O3'" B DG 10 ? ? P B DT 11 ? ? 1.485 1.607 -0.122 0.012 Y 18 1 P B DT 11 ? ? OP1 B DT 11 ? ? 1.259 1.485 -0.226 0.017 N 19 1 P B DT 11 ? ? "O5'" B DT 11 ? ? 1.700 1.593 0.107 0.010 N 20 1 C4 B DT 11 ? ? O4 B DT 11 ? ? 1.302 1.228 0.074 0.009 N 21 1 "O4'" B DC 12 ? ? "C4'" B DC 12 ? ? 1.375 1.446 -0.071 0.010 N 22 1 C5 B DG 14 ? ? N7 B DG 14 ? ? 1.426 1.388 0.038 0.006 N 23 1 N7 B DG 14 ? ? C8 B DG 14 ? ? 1.264 1.305 -0.041 0.006 N 24 1 "O3'" B DG 14 ? ? P B DT 15 ? ? 1.681 1.607 0.074 0.012 Y 25 1 P B DC 16 ? ? OP2 B DC 16 ? ? 1.366 1.485 -0.119 0.017 N 26 1 P B DC 16 ? ? "O5'" B DC 16 ? ? 1.468 1.593 -0.125 0.010 N 27 1 "C2'" B DC 16 ? ? "C1'" B DC 16 ? ? 1.593 1.519 0.074 0.010 N 28 1 "O4'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.381 1.446 -0.065 0.010 N 29 1 "O3'" B DC 16 ? ? P B DG 17 ? ? 1.715 1.607 0.108 0.012 Y 30 1 P B DG 17 ? ? OP1 B DG 17 ? ? 1.654 1.485 0.169 0.017 N 31 1 P B DG 17 ? ? "O5'" B DG 17 ? ? 1.401 1.593 -0.192 0.010 N 32 1 C6 B DG 17 ? ? N1 B DG 17 ? ? 1.340 1.391 -0.051 0.007 N 33 1 C8 B DG 17 ? ? N9 B DG 17 ? ? 1.325 1.374 -0.049 0.007 N 34 1 CB A SER 326 ? ? OG A SER 326 ? ? 1.501 1.418 0.083 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B DC 1 ? ? "C5'" B DC 1 ? ? "C4'" B DC 1 ? ? 103.94 109.40 -5.46 0.80 N 2 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 103.56 108.00 -4.44 0.70 N 3 1 C6 B DC 1 ? ? N1 B DC 1 ? ? C2 B DC 1 ? ? 123.34 120.30 3.04 0.40 N 4 1 C4 B DC 1 ? ? C5 B DC 1 ? ? C6 B DC 1 ? ? 121.08 117.40 3.68 0.50 N 5 1 C5 B DC 1 ? ? C6 B DC 1 ? ? N1 B DC 1 ? ? 116.44 121.00 -4.56 0.50 N 6 1 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 123.65 118.90 4.75 0.60 N 7 1 N3 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 117.18 121.90 -4.72 0.70 N 8 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? "C2'" B DC 2 ? ? 100.05 105.90 -5.85 0.80 N 9 1 N1 B DC 2 ? ? C2 B DC 2 ? ? N3 B DC 2 ? ? 114.91 119.20 -4.29 0.70 N 10 1 C2 B DC 2 ? ? N3 B DC 2 ? ? C4 B DC 2 ? ? 127.09 119.90 7.19 0.50 N 11 1 N3 B DC 2 ? ? C4 B DC 2 ? ? C5 B DC 2 ? ? 119.02 121.90 -2.88 0.40 N 12 1 "O5'" B DG 3 ? ? P B DG 3 ? ? OP2 B DG 3 ? ? 118.72 110.70 8.02 1.20 N 13 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.06 108.30 3.76 0.30 N 14 1 N3 B DG 3 ? ? C4 B DG 3 ? ? C5 B DG 3 ? ? 124.99 128.60 -3.61 0.50 N 15 1 C5 B DG 3 ? ? C6 B DG 3 ? ? O6 B DG 3 ? ? 124.94 128.60 -3.66 0.60 N 16 1 "O5'" B DA 4 ? ? P B DA 4 ? ? OP2 B DA 4 ? ? 118.68 110.70 7.98 1.20 N 17 1 "C5'" B DA 4 ? ? "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 123.00 115.70 7.30 1.20 N 18 1 N1 B DA 4 ? ? C2 B DA 4 ? ? N3 B DA 4 ? ? 125.64 129.30 -3.66 0.50 N 19 1 C2 B DA 4 ? ? N3 B DA 4 ? ? C4 B DA 4 ? ? 114.60 110.60 4.00 0.50 N 20 1 C5 B DA 4 ? ? N7 B DA 4 ? ? C8 B DA 4 ? ? 100.68 103.90 -3.22 0.50 N 21 1 "C5'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 124.89 115.70 9.19 1.20 N 22 1 "C1'" B DC 5 ? ? "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? 104.10 110.10 -6.00 1.00 N 23 1 N3 B DC 5 ? ? C4 B DC 5 ? ? C5 B DC 5 ? ? 119.19 121.90 -2.71 0.40 N 24 1 "O5'" B DC 6 ? ? P B DC 6 ? ? OP2 B DC 6 ? ? 119.52 110.70 8.82 1.20 N 25 1 C2 B DC 6 ? ? N3 B DC 6 ? ? C4 B DC 6 ? ? 123.67 119.90 3.77 0.50 N 26 1 "O3'" B DC 6 ? ? P B DG 7 ? ? OP1 B DG 7 ? ? 122.04 110.50 11.54 1.10 Y 27 1 OP1 B DG 7 ? ? P B DG 7 ? ? OP2 B DG 7 ? ? 100.37 119.60 -19.23 1.50 N 28 1 "O5'" B DG 7 ? ? P B DG 7 ? ? OP2 B DG 7 ? ? 96.52 105.70 -9.18 0.90 N 29 1 "O5'" B DG 7 ? ? "C5'" B DG 7 ? ? "C4'" B DG 7 ? ? 102.75 109.40 -6.65 0.80 N 30 1 P B DG 7 ? ? "O5'" B DG 7 ? ? "C5'" B DG 7 ? ? 107.97 120.90 -12.93 1.60 N 31 1 N1 B DG 7 ? ? C2 B DG 7 ? ? N2 B DG 7 ? ? 121.63 116.20 5.43 0.90 N 32 1 N3 B DG 7 ? ? C2 B DG 7 ? ? N2 B DG 7 ? ? 114.06 119.90 -5.84 0.70 N 33 1 C5 B DG 7 ? ? C6 B DG 7 ? ? O6 B DG 7 ? ? 123.12 128.60 -5.48 0.60 N 34 1 "O3'" B DG 7 ? ? P B DA 8 ? ? OP2 B DA 8 ? ? 121.05 110.50 10.55 1.10 Y 35 1 "O5'" B DA 8 ? ? P B DA 8 ? ? OP1 B DA 8 ? ? 99.15 105.70 -6.55 0.90 N 36 1 "O5'" B DA 8 ? ? "C5'" B DA 8 ? ? "C4'" B DA 8 ? ? 102.76 109.40 -6.64 0.80 N 37 1 P B DA 8 ? ? "O5'" B DA 8 ? ? "C5'" B DA 8 ? ? 110.16 120.90 -10.74 1.60 N 38 1 "O3'" B DA 8 ? ? P B DC 9 ? ? OP2 B DC 9 ? ? 121.02 110.50 10.52 1.10 Y 39 1 "O5'" B DC 9 ? ? P B DC 9 ? ? OP1 B DC 9 ? ? 93.19 105.70 -12.51 0.90 N 40 1 "O5'" B DC 9 ? ? "C5'" B DC 9 ? ? "C4'" B DC 9 ? ? 101.34 109.40 -8.06 0.80 N 41 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 112.65 108.30 4.35 0.30 N 42 1 C2 B DC 9 ? ? N3 B DC 9 ? ? C4 B DC 9 ? ? 124.15 119.90 4.25 0.50 N 43 1 N3 B DC 9 ? ? C4 B DC 9 ? ? C5 B DC 9 ? ? 117.46 121.90 -4.44 0.40 N 44 1 OP1 B DG 10 ? ? P B DG 10 ? ? OP2 B DG 10 ? ? 135.31 119.60 15.71 1.50 N 45 1 "O5'" B DG 10 ? ? "C5'" B DG 10 ? ? "C4'" B DG 10 ? ? 103.32 109.40 -6.08 0.80 N 46 1 C6 B DG 10 ? ? N1 B DG 10 ? ? C2 B DG 10 ? ? 119.80 125.10 -5.30 0.60 N 47 1 N1 B DG 10 ? ? C2 B DG 10 ? ? N3 B DG 10 ? ? 127.77 123.90 3.87 0.60 N 48 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 115.57 111.50 4.07 0.50 N 49 1 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 113.90 119.90 -6.00 0.60 N 50 1 "O3'" B DG 10 ? ? P B DT 11 ? ? OP1 B DT 11 ? ? 118.85 110.50 8.35 1.10 Y 51 1 N3 B DT 11 ? ? C4 B DT 11 ? ? C5 B DT 11 ? ? 119.30 115.20 4.10 0.60 N 52 1 "C3'" B DT 11 ? ? "O3'" B DT 11 ? ? P B DC 12 ? ? 127.59 119.70 7.89 1.20 Y 53 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 111.94 108.30 3.64 0.30 N 54 1 C6 B DC 12 ? ? N1 B DC 12 ? ? C2 B DC 12 ? ? 116.57 120.30 -3.73 0.40 N 55 1 N3 B DC 12 ? ? C4 B DC 12 ? ? C5 B DC 12 ? ? 118.79 121.90 -3.11 0.40 N 56 1 C5 B DC 12 ? ? C6 B DC 12 ? ? N1 B DC 12 ? ? 125.29 121.00 4.29 0.50 N 57 1 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 114.45 118.90 -4.45 0.60 N 58 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.66 108.30 7.36 0.30 N 59 1 C6 B DG 13 ? ? N1 B DG 13 ? ? C2 B DG 13 ? ? 120.29 125.10 -4.81 0.60 N 60 1 N3 B DG 13 ? ? C4 B DG 13 ? ? C5 B DG 13 ? ? 124.87 128.60 -3.73 0.50 N 61 1 C5 B DG 13 ? ? C6 B DG 13 ? ? N1 B DG 13 ? ? 114.94 111.50 3.44 0.50 N 62 1 C8 B DG 13 ? ? N9 B DG 13 ? ? C4 B DG 13 ? ? 103.84 106.40 -2.56 0.40 N 63 1 N9 B DG 13 ? ? C4 B DG 13 ? ? C5 B DG 13 ? ? 108.34 105.40 2.94 0.40 N 64 1 N3 B DG 13 ? ? C2 B DG 13 ? ? N2 B DG 13 ? ? 115.60 119.90 -4.30 0.70 N 65 1 N1 B DG 13 ? ? C6 B DG 13 ? ? O6 B DG 13 ? ? 115.69 119.90 -4.21 0.60 N 66 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 118.84 125.10 -6.26 0.60 N 67 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 128.14 123.90 4.24 0.60 N 68 1 N3 B DG 14 ? ? C4 B DG 14 ? ? C5 B DG 14 ? ? 124.88 128.60 -3.72 0.50 N 69 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 115.45 111.50 3.95 0.50 N 70 1 C4 B DG 14 ? ? C5 B DG 14 ? ? N7 B DG 14 ? ? 107.11 110.80 -3.69 0.40 N 71 1 "O3'" B DG 14 ? ? P B DT 15 ? ? OP1 B DT 15 ? ? 89.49 105.20 -15.71 2.20 Y 72 1 OP1 B DT 15 ? ? P B DT 15 ? ? OP2 B DT 15 ? ? 134.72 119.60 15.12 1.50 N 73 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 119.44 114.60 4.84 0.60 N 74 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 119.57 127.20 -7.63 0.60 N 75 1 N3 B DT 15 ? ? C4 B DT 15 ? ? C5 B DT 15 ? ? 120.04 115.20 4.84 0.60 N 76 1 C5 B DT 15 ? ? C6 B DT 15 ? ? N1 B DT 15 ? ? 117.83 123.70 -5.87 0.60 N 77 1 N3 B DT 15 ? ? C2 B DT 15 ? ? O2 B DT 15 ? ? 115.50 122.30 -6.80 0.60 N 78 1 N3 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 113.86 119.90 -6.04 0.60 N 79 1 "O5'" B DC 16 ? ? P B DC 16 ? ? OP2 B DC 16 ? ? 124.51 110.70 13.81 1.20 N 80 1 "C3'" B DC 16 ? ? "C2'" B DC 16 ? ? "C1'" B DC 16 ? ? 97.03 102.40 -5.37 0.80 N 81 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? "C2'" B DC 16 ? ? 100.64 105.90 -5.26 0.80 N 82 1 C2 B DC 16 ? ? N3 B DC 16 ? ? C4 B DC 16 ? ? 124.32 119.90 4.42 0.50 N 83 1 N3 B DC 16 ? ? C4 B DC 16 ? ? C5 B DC 16 ? ? 117.63 121.90 -4.27 0.40 N 84 1 OP1 B DG 17 ? ? P B DG 17 ? ? OP2 B DG 17 ? ? 103.81 119.60 -15.79 1.50 N 85 1 "O5'" B DG 17 ? ? P B DG 17 ? ? OP2 B DG 17 ? ? 137.52 110.70 26.82 1.20 N 86 1 "O5'" B DG 17 ? ? "C5'" B DG 17 ? ? "C4'" B DG 17 ? ? 100.28 109.40 -9.12 0.80 N 87 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 113.21 108.30 4.91 0.30 N 88 1 C5 B DG 17 ? ? N7 B DG 17 ? ? C8 B DG 17 ? ? 101.08 104.30 -3.22 0.50 N 89 1 C5 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 124.40 128.60 -4.20 0.60 N 90 1 N A SER 326 ? ? CA A SER 326 ? ? CB A SER 326 ? ? 123.09 110.50 12.59 1.50 N 91 1 NE A ARG 342 ? ? CZ A ARG 342 ? ? NH2 A ARG 342 ? ? 116.64 120.30 -3.66 0.50 N 92 1 CD A ARG 352 ? ? NE A ARG 352 ? ? CZ A ARG 352 ? ? 114.55 123.60 -9.05 1.40 N 93 1 NE A ARG 352 ? ? CZ A ARG 352 ? ? NH1 A ARG 352 ? ? 117.01 120.30 -3.29 0.50 N 94 1 CB A ASP 365 ? ? CG A ASP 365 ? ? OD2 A ASP 365 ? ? 112.11 118.30 -6.19 0.90 N 95 1 NE A ARG 370 ? ? CZ A ARG 370 ? ? NH1 A ARG 370 ? ? 127.00 120.30 6.70 0.50 N 96 1 NE A ARG 370 ? ? CZ A ARG 370 ? ? NH2 A ARG 370 ? ? 115.52 120.30 -4.78 0.50 N 97 1 CB A LEU 377 ? ? CG A LEU 377 ? ? CD2 A LEU 377 ? ? 100.52 111.00 -10.48 1.70 N 98 1 NE A ARG 386 ? ? CZ A ARG 386 ? ? NH2 A ARG 386 ? ? 116.75 120.30 -3.55 0.50 N 99 1 CB A ASP 388 ? ? CG A ASP 388 ? ? OD2 A ASP 388 ? ? 125.01 118.30 6.71 0.90 N 100 1 CB A PHE 410 ? ? CG A PHE 410 ? ? CD2 A PHE 410 ? ? 116.40 120.80 -4.40 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 354 ? ? -84.84 -71.51 2 1 ALA A 364 ? ? -110.57 -157.27 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id SER _pdbx_validate_chiral.auth_seq_id 326 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC B 6 ? ? 0.059 'SIDE CHAIN' 2 1 DA B 8 ? ? 0.062 'SIDE CHAIN' 3 1 DC B 9 ? ? 0.076 'SIDE CHAIN' 4 1 DC B 12 ? ? 0.109 'SIDE CHAIN' 5 1 GLN A 371 ? ? 0.073 'SIDE CHAIN' # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ASN A 348 ? ? 13.08 2 1 GLY A 381 ? ? 11.57 3 1 LYS A 391 ? ? -10.60 4 1 GLY A 403 ? ? 11.32 5 1 ALA A 406 ? ? 12.53 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE PROTEIN FORMS A DIMERIC BARREL. THE FOUR STRANDS OF EACH BETA SHEET DESCRIBED BELOW COMPRISE A HALF BARREL. THE OTHER HALF IS GENERATED BY A CRYSTALLOGRAPHIC TWO-FOLD. ; # _pdbx_entry_details.entry_id 2BOP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'YTTERBIUM WAS USED IN THE CRYSTALLIZATION AND PHASING OF THIS STRUCTURE. IT HAS NO ROLE IN DNA-BINDING OR DNA SEQUENCE RECOGNITION.' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 YB YB YB N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # _ndb_struct_conf_na.entry_id 2BOP _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 17 4_776 0.129 -0.237 0.241 -7.064 -4.297 -5.769 1 B_DC2:DG17_B B 2 ? B 17 ? 19 1 1 A DG 3 1_555 A DC 16 4_776 -0.269 -0.063 0.182 10.504 -1.721 -0.144 2 B_DG3:DC16_B B 3 ? B 16 ? 19 1 1 A DA 4 1_555 A DT 15 4_776 0.149 0.051 0.153 10.121 -12.326 -6.275 3 B_DA4:DT15_B B 4 ? B 15 ? 20 1 1 A DC 5 1_555 A DG 14 4_776 0.202 -0.180 -0.011 9.571 -18.162 -2.572 4 B_DC5:DG14_B B 5 ? B 14 ? 19 1 1 A DC 6 1_555 A DG 13 4_776 0.123 -0.192 -0.046 2.576 -8.856 -1.933 5 B_DC6:DG13_B B 6 ? B 13 ? 19 1 1 A DG 7 1_555 A DC 12 4_776 -0.253 -0.129 0.274 15.520 -13.099 1.914 6 B_DG7:DC12_B B 7 ? B 12 ? 19 1 1 A DA 8 1_555 A DT 11 4_776 0.104 -0.144 0.184 -0.851 -17.096 -3.189 7 B_DA8:DT11_B B 8 ? B 11 ? 20 1 1 A DC 9 1_555 A DG 10 4_776 0.139 -0.214 0.009 -2.451 -3.174 -1.880 8 B_DC9:DG10_B B 9 ? B 10 ? 19 1 1 A DG 10 1_555 A DC 9 4_776 -0.139 -0.214 0.009 2.451 -3.174 -1.880 9 B_DG10:DC9_B B 10 ? B 9 ? 19 1 1 A DT 11 1_555 A DA 8 4_776 -0.104 -0.144 0.184 0.851 -17.096 -3.189 10 B_DT11:DA8_B B 11 ? B 8 ? 20 1 1 A DC 12 1_555 A DG 7 4_776 0.253 -0.129 0.274 -15.520 -13.099 1.914 11 B_DC12:DG7_B B 12 ? B 7 ? 19 1 1 A DG 13 1_555 A DC 6 4_776 -0.123 -0.192 -0.046 -2.576 -8.856 -1.933 12 B_DG13:DC6_B B 13 ? B 6 ? 19 1 1 A DG 14 1_555 A DC 5 4_776 -0.202 -0.180 -0.011 -9.571 -18.162 -2.572 13 B_DG14:DC5_B B 14 ? B 5 ? 19 1 1 A DT 15 1_555 A DA 4 4_776 -0.149 0.051 0.153 -10.121 -12.326 -6.275 14 B_DT15:DA4_B B 15 ? B 4 ? 20 1 1 A DC 16 1_555 A DG 3 4_776 0.269 -0.063 0.182 -10.504 -1.721 -0.144 15 B_DC16:DG3_B B 16 ? B 3 ? 19 1 1 A DG 17 1_555 A DC 2 4_776 -0.129 -0.237 0.241 7.064 -4.297 -5.769 16 B_DG17:DC2_B B 17 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 17 4_776 A DG 3 1_555 A DC 16 4_776 0.648 1.057 3.046 3.245 5.842 26.098 0.806 -0.578 3.256 12.675 -7.040 26.926 1 BB_DC2DG3:DC16DG17_BB B 2 ? B 17 ? B 3 ? B 16 ? 1 A DG 3 1_555 A DC 16 4_776 A DA 4 1_555 A DT 15 4_776 -1.332 1.076 3.513 -2.819 2.074 40.504 1.297 1.575 3.642 2.989 4.063 40.649 2 BB_DG3DA4:DT15DC16_BB B 3 ? B 16 ? B 4 ? B 15 ? 1 A DA 4 1_555 A DT 15 4_776 A DC 5 1_555 A DG 14 4_776 0.878 -0.615 3.340 -0.027 1.713 32.457 -1.403 -1.573 3.303 3.062 0.048 32.501 3 BB_DA4DC5:DG14DT15_BB B 4 ? B 15 ? B 5 ? B 14 ? 1 A DC 5 1_555 A DG 14 4_776 A DC 6 1_555 A DG 13 4_776 -0.740 -0.434 3.439 -0.611 9.244 34.142 -2.132 1.125 3.228 15.396 1.018 35.341 4 BB_DC5DC6:DG13DG14_BB B 5 ? B 14 ? B 6 ? B 13 ? 1 A DC 6 1_555 A DG 13 4_776 A DG 7 1_555 A DC 12 4_776 0.283 1.017 3.192 -0.398 14.482 27.517 -1.039 -0.609 3.300 28.112 0.773 31.032 5 BB_DC6DG7:DC12DG13_BB B 6 ? B 13 ? B 7 ? B 12 ? 1 A DG 7 1_555 A DC 12 4_776 A DA 8 1_555 A DT 11 4_776 -0.225 -0.352 3.610 1.828 -0.115 42.780 -0.469 0.510 3.599 -0.157 -2.505 42.818 6 BB_DG7DA8:DT11DC12_BB B 7 ? B 12 ? B 8 ? B 11 ? 1 A DA 8 1_555 A DT 11 4_776 A DC 9 1_555 A DG 10 4_776 0.621 0.510 3.503 3.222 -6.008 36.575 1.653 -0.516 3.420 -9.472 -5.080 37.184 7 BB_DA8DC9:DG10DT11_BB B 8 ? B 11 ? B 9 ? B 10 ? 1 A DC 9 1_555 A DG 10 4_776 A DG 10 1_555 A DC 9 4_776 0.000 1.554 3.418 0.000 -5.620 40.249 2.871 0.000 3.182 -8.119 0.000 40.624 8 BB_DC9DG10:DC9DG10_BB B 9 ? B 10 ? B 10 ? B 9 ? 1 A DG 10 1_555 A DC 9 4_776 A DT 11 1_555 A DA 8 4_776 -0.621 0.510 3.503 -3.222 -6.008 36.575 1.653 0.516 3.420 -9.472 5.080 37.184 9 BB_DG10DT11:DA8DC9_BB B 10 ? B 9 ? B 11 ? B 8 ? 1 A DT 11 1_555 A DA 8 4_776 A DC 12 1_555 A DG 7 4_776 0.225 -0.352 3.610 -1.828 -0.115 42.780 -0.469 -0.510 3.599 -0.157 2.505 42.818 10 BB_DT11DC12:DG7DA8_BB B 11 ? B 8 ? B 12 ? B 7 ? 1 A DC 12 1_555 A DG 7 4_776 A DG 13 1_555 A DC 6 4_776 -0.283 1.017 3.192 0.398 14.482 27.517 -1.039 0.609 3.300 28.112 -0.773 31.032 11 BB_DC12DG13:DC6DG7_BB B 12 ? B 7 ? B 13 ? B 6 ? 1 A DG 13 1_555 A DC 6 4_776 A DG 14 1_555 A DC 5 4_776 0.740 -0.434 3.439 0.611 9.244 34.142 -2.132 -1.125 3.228 15.396 -1.018 35.341 12 BB_DG13DG14:DC5DC6_BB B 13 ? B 6 ? B 14 ? B 5 ? 1 A DG 14 1_555 A DC 5 4_776 A DT 15 1_555 A DA 4 4_776 -0.878 -0.615 3.340 0.027 1.713 32.457 -1.403 1.573 3.303 3.062 -0.048 32.501 13 BB_DG14DT15:DA4DC5_BB B 14 ? B 5 ? B 15 ? B 4 ? 1 A DT 15 1_555 A DA 4 4_776 A DC 16 1_555 A DG 3 4_776 1.332 1.076 3.513 2.819 2.074 40.504 1.297 -1.575 3.642 2.989 -4.063 40.649 14 BB_DT15DC16:DG3DA4_BB B 15 ? B 4 ? B 16 ? B 3 ? 1 A DC 16 1_555 A DG 3 4_776 A DG 17 1_555 A DC 2 4_776 -0.648 1.057 3.046 -3.245 5.842 26.098 0.806 0.578 3.256 12.675 7.040 26.926 15 BB_DC16DG17:DC2DG3_BB B 16 ? B 3 ? B 17 ? B 2 ? # _atom_sites.entry_id 2BOP _atom_sites.fract_transf_matrix[1][1] 0.015480 _atom_sites.fract_transf_matrix[1][2] -0.008300 _atom_sites.fract_transf_matrix[1][3] -0.005951 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017565 _atom_sites.fract_transf_matrix[2][3] -0.005951 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018546 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'YTTERBIUM WAS USED IN THE CRYSTALLIZATION AND PHASING OF THIS STRUCTURE. IT HAS NO ROLE IN DNA-BINDING OR DNA SEQUENCE RECOGNITION.' # loop_ _atom_type.symbol C N O P S YB # loop_